<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:20:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541547" ref_strand="+" ref_description="SGN-E541547 [TUS-62-G8]">
      <seq>ctgcaaaggaagagggagaagaagaagagaaaagctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgagagactaaagagatatgaggttaccaaagttcaaggtcccgaggttaagccacattttctcactggtgaagaacgattctatattaaaaagatggcacaaaagaagtctaattatgtgcctattgggcaaaaggggagtctttggaggtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="93" stop="2058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="393" g_stop="527" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="528" i_stop="1577" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1578" g_stop="1758" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="317" r_length="182" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E541547" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="393" e_stop="527"/>
          <exon e_start="1578" e_stop="1758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATT-GGCAAAAGGGGAGTCTTTGGAGGTGTTA</genome_strand>
        <mrna_strand>CTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAGAAGTCTAATTATGTGCCTATTGGGCAAAAGGGGAGTCTTTGGAGGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298313" ref_strand="+" ref_description="SGN-E298313 [cLET-41-A10]">
      <seq>tgcaaaggaagagggagaagaagaagagtattgctgccaacaagagagatccgagaagacttggtgttcaggggaagaagaagaagcagaaatttgacactgctgaagaaagaatcaaacagaagattgaaaatgcaaaagtcaaagaagctatgctaattgagagactaaagagatatgaggttaccaaagttcaaggtcccgaggttaagccacattttctcactggtgaagaacgattctatattaaaaagatggcacaaaaaaagtctaattatgtgcctattggcaaaaggggagtctttggaggtgttattcttaatatgcatctacattggaaaagacatgaaactgtcaaagtcatatgcaaaccctgcaaacctggtcagattcaagaatatgttgatgaaattgcaagactgagtggtggcattccgattcagataattgcaaatgataccatcgttttttaccgaggaagggaatatgtgcagcctgaaattatgtatcctattgatacactgtcgaaaaagagggcgttggaaaaatcaaaatacgagcaatcgctagagtctgtgagacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="94" stop="3639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="394" g_stop="527" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="528" i_stop="1577" i_length="1050">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1578" g_stop="1979" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="536" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1980" i_stop="3288" i_length="1309">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3289" g_stop="3339" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="587" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E298313" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="394" e_stop="527"/>
          <exon e_start="1578" e_stop="1979"/>
          <exon e_start="3289" e_stop="3339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAATGTGAGATAAAGATTTTTCTTTTTCACTTTTAGGAGCCTATGATTGTTTTTTTTTTTTTTTTGCCCAATAATGCTACTGCTGCTACTGTTATTTTCTCCATTATTCTATATGCGGTTACCTTGGTCGAGGGTCCTTCCGAAACAACCTCTCTACCTACCTTCAGTTAGGGAGATAGGAGTAAGGTTGCATACACACCACCCTCCCTAGACTCTACTAATGGGACTACAACTAAGGATTCATAGTGCCACCCCTAACTTGTTTGAGATTGAAAACAAATACCACCGCAGCTACTGAAACTATGTCTCAGCCCGAATTATTTGGTCTCGACTGTATCATTTCTCAAAATCCATCCCGTTCCGTCTGAACCTGTATGATTGTTATCATTATATTAGCTTAATAATCTGCAATAATATTAAGATGAACTGAATTGAAGCGCTTGGGAGTGAGCTTCAACCTGTTTTCTTCAGTTTGGTTGACAATAAATTAGAAGGAAGCCGGATGAAAATGACAAATTAGACGTATTGATGTGTTCTCTGTTGTTATTGTTAAATTTATTGAGGAACCTTTTATATTACCATTTCTCATTTGGTACTTGGAAATTAAAGTAAGATTAGAGAAGCATCATTGATCCTGCCTTTGTCTTTTTCCTTCTCTTCTTGGCTGTGGTTGTTGGAGCTTAATCTTAGTAGTTATTGCAAAAAAGATCCATCTTGTCTACGATTTCTGTCTTGCAAGACTGGAGAAAAAAAAGAGCCTTTGTGCTTCCGAATTACTTTAAATTTTTGTGTCATCTACTTTAAACCAAGTTACAACAAGTCCTGTATGCGTGGTTACTGCCTCACTGAGACATTGATGCCATTTCGTAGTTAATTTTGTGGCTATCTTAACCTTTTCCTGGTTTAGGGGTGTGAAGCATGTAGTATGGTCTCCCTATATTTATATTTGTAGAAGCTAAGATTTGTTTTGTTTGCATTTTCCATTTACTGCTATACAAAACCTAATGTACTTTTTTATTTCAACAAAAGCTGATATGTGTTGGCTTTGGGTCAGGCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGGGTAAGTTTGTTAGAGCTAATTTTCTATAATAACCAAGTCATTGCTTCTCATCATGCATTCATGCAAAATTCACTTTGTAAAGTCTCAATGTGTATAGCCCTTCTACCATAAACTTCTACTCATCGACACCAACTTCCACAATCATTCTTCTGCGGTTGACGCGCTACTTAGTCTATTTGCGTGGGTCCTACATTTTCTCAATTGACTTGTGCCAAAGATGTATGACATAGGTGTGTGTAGTTCTATGGATAATTTTATTCCTAATATTATCAAAAACTGCATGTACCGATATATGCACATTTTACCCCTATTGTAGCCGAATCCATGTTATGCAACGTATTGTTGACCTGGCTCATAGATGTAGTTAAGTTAATTATTAGGGTAGATCATCTGAAATCCACCTTAACAACCACTCTCCTACCGTTTTGTGACTTGTATTGTTGATTTGGCTCATAGATGTGGCTCAGTTGATAATTAGAGTAGATCATCTGAAATCCACCTCAACAACCACTCCCCTAAGTACCCAAAAGTGTGGCCTAGTGCTTAGTGGTCAATGAAAGTGGGTTGAGAACGATGAGGTCTCAAGTTCAAATCCTAGCATAGACAAAAACACTAGGTGATTTCTTCTCATCTGATCTAGCCTTGGTGGACGGAGTTACTTGATACTTGTTGCTGGTGGAAGGTGAAGTTAGTCGAGGTGCGTGAAAGCTGGCCCAGACACCACAATTATCTAAATAAAAACACTCTACTACCCTCTTGTGGCTTGTGTAATTCGCTCTACCTCACAAAAGAACAAGACCTTTCGTTGCACCTTATATACCCCATTGCACTTTGCAGTTTCGTCTTTTTCCATCGACCTTCTTTACTGCTTCAATCGTCAACATTATAGGAAAAAGATCTGTTGGTTTTTGCGATATGTTTGCACTATTTTAACCATCGATGGCTGTTTAGTTCGAAACTGAAACTAAATGTTATCAGCTTTTCATCATCATTCTTAGGAATATATACCAAAATGTCGTTTATTTCACTTGGAAAGATAACAAAGTATCTATCACTTTGTATTCAACAAAACATAGTAACGATCTTCCTTTTGCAAATGCTTTTGGATATTTAACTTACGATTTTTTCCCTCACAGACCTTTGGTAGTCTCATACGTGTTTCATGCTACTTTTTTTTGGAATCAGTTCACTGCACTGAAGGATTTGACTTGTAATACTGTTTGATTCTGTCATATTTACCTATATCTCTGTTTTATCTACTTCTGCATCAACCATGGTATGAATTACTAATCAAATTCTCTTTCTTCAGGCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTC</genome_strand>
        <mrna_strand>TGCAAAGGAAGAGGGAGAAGAAGAAGAGTATTGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAAAAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541545" ref_strand="+" ref_description="SGN-E541545 [TUS-62-G8](-)">
      <seq>aaaaggggagtctttggaggtgttattcttaatatgcatctacattggaaaagacatgaaactgtcaaagtcatatgcaaaccctgcaaacctggtcagattcaagaatatgttgatgaaattgcaagactgagtggtggcattccgattcagataattgcaaatgataccatcgttttttaccgaggaagggaatatgtgcagcctgaaattatgtatcctattgatacactgtcgaagaagagggcgttggaaaaatcaaaatacgagcaatcgctagagtctgtgagacatttcattgccattgctgagaaggaacttgcactctactatagacatgttgccctatatgatgaaccaaatattcagagtgcttactccatccttgatgattcaacaagtacaagtgaaaaacgaaatgatgaaataggagaggagaactattcagcagacgaatctatttccttggatctcgagttaccacaagttgatgattattgctcggatgataaacaatctttaagcgaatttggatttgaggatactgatgaatcaagtagtgatgagttggattctggggaggaggaaactagtaattactgcggtagcatatggggaaattattgaatgttgagacttgaaataatgtggttttaattcttgatctgataaattgagggattggaatagaatagaattttttcaaattctaaatcttctgtttggttatcctgaaattggcacaaaaactagaacttgatttttaattttttaacccaagatagatcatatttcttatgtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="1434" stop="4148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1734" g_stop="1979" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1980" i_stop="3288" i_length="1309">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3289" g_stop="3845" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="803" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="813"/>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E541545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1734" e_stop="1979"/>
          <exon e_start="3289" e_stop="3845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGGGTAAGTTTGTTAGAGCTAATTTTCTATAATAACCAAGTCATTGCTTCTCATCATGCATTCATGCAAAATTCACTTTGTAAAGTCTCAATGTGTATAGCCCTTCTACCATAAACTTCTACTCATCGACACCAACTTCCACAATCATTCTTCTGCGGTTGACGCGCTACTTAGTCTATTTGCGTGGGTCCTACATTTTCTCAATTGACTTGTGCCAAAGATGTATGACATAGGTGTGTGTAGTTCTATGGATAATTTTATTCCTAATATTATCAAAAACTGCATGTACCGATATATGCACATTTTACCCCTATTGTAGCCGAATCCATGTTATGCAACGTATTGTTGACCTGGCTCATAGATGTAGTTAAGTTAATTATTAGGGTAGATCATCTGAAATCCACCTTAACAACCACTCTCCTACCGTTTTGTGACTTGTATTGTTGATTTGGCTCATAGATGTGGCTCAGTTGATAATTAGAGTAGATCATCTGAAATCCACCTCAACAACCACTCCCCTAAGTACCCAAAAGTGTGGCCTAGTGCTTAGTGGTCAATGAAAGTGGGTTGAGAACGATGAGGTCTCAAGTTCAAATCCTAGCATAGACAAAAACACTAGGTGATTTCTTCTCATCTGATCTAGCCTTGGTGGACGGAGTTACTTGATACTTGTTGCTGGTGGAAGGTGAAGTTAGTCGAGGTGCGTGAAAGCTGGCCCAGACACCACAATTATCTAAATAAAAACACTCTACTACCCTCTTGTGGCTTGTGTAATTCGCTCTACCTCACAAAAGAACAAGACCTTTCGTTGCACCTTATATACCCCATTGCACTTTGCAGTTTCGTCTTTTTCCATCGACCTTCTTTACTGCTTCAATCGTCAACATTATAGGAAAAAGATCTGTTGGTTTTTGCGATATGTTTGCACTATTTTAACCATCGATGGCTGTTTAGTTCGAAACTGAAACTAAATGTTATCAGCTTTTCATCATCATTCTTAGGAATATATACCAAAATGTCGTTTATTTCACTTGGAAAGATAACAAAGTATCTATCACTTTGTATTCAACAAAACATAGTAACGATCTTCCTTTTGCAAATGCTTTTGGATATTTAACTTACGATTTTTTCCCTCACAGACCTTTGGTAGTCTCATACGTGTTTCATGCTACTTTTTTTTGGAATCAGTTCACTGCACTGAAGGATTTGACTTGTAATACTGTTTGATTCTGTCATATTTACCTATATCTCTGTTTTATCTACTTCTGCATCAACCATGGTATGAATTACTAATCAAATTCTCTTTCTTCAGGCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</genome_strand>
        <mrna_strand>AAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419159" ref_strand="-" ref_description="SGN-E419159 [STM-29-G9]">
      <seq>atttcattgtcattgctgagaaggaacttgcactctactatagacatgttgccctatacgatgacccaaataatcggagttcttactccatccttgatgattcaagaagcacaagtgaaaaacgaaatgacgaaataggagaggagagctattcagcaggcgaatctatttcctcggatctcgagttacctcaaattgatgattattgttctgatgacaaacaatctttaagcgaatttgaatttgaggatactgacgaatcaagtagtgatgacttggattctggggaggaggaaactagtaattactgaggtagcatatggggaaatatttgaatattgagacctgaaatgatgtggttttaattcttgatctgataattgagggattggaatagaataggttttttcaaatctaattcttctgtttggttatgctgaaattggcacaaaaactagaacttgatctttaatttgtttaacccaatttcatgagctaattccctttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="3035" stop="4137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3335" g_stop="3823" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="522"/>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E419159" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3335" e_stop="3823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTT-TTTAACCCAAG</genome_strand>
        <mrna_strand>ATTTCATTGTCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATACGATGACCCAAATAATCGGAGTTCTTACTCCATCCTTGATGATTCAAGAAGCACAAGTGAAAAACGAAATGACGAAATAGGAGAGGAGAGCTATTCAGCAGGCGAATCTATTTCCTCGGATCTCGAGTTACCTCAAATTGATGATTATTGTTCTGATGACAAACAATCTTTAAGCGAATTTGAATTTGAGGATACTGACGAATCAAGTAGTGATGACTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGAGGTAGCATATGGGGAAATATTTGAATATTGAGACCTGAAATGATGTGGTTTTAATTCTTGATCTGAT-AATTGAGGGATTGGAATAGAATAG-GTTTTTTCAAA-TCTAATTCTTCTGTTTGGTTATGCTGAAATTGGCACAAAAACTAGAACTTGATCTTTAATTTGTTTAACCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296607" ref_strand="+" ref_description="SGN-E296607 [cLET-39-D16]">
      <seq>gttaagcagtgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4047" stop="6758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4347" g_stop="4520" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="258" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6458" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="438" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E296607" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4347" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTG</genome_strand>
        <mrna_strand>GTTAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389781" ref_strand="+" ref_description="SGN-E389781 [TUS-4-E17]">
      <seq>taagcagtgataaggagatatttttcaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4050" stop="6932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4349" g_stop="4520" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="255" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="338" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6632" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="609" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E389781" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4349" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGG</genome_strand>
        <mrna_strand>TAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAA-GATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227009" ref_strand="+" ref_description="SGN-E227009 [cLED-1-F6]">
      <seq>aaagcagtgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattgtcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4049" stop="6790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4349" g_stop="4520" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="256" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="339" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6490" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E227009" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4349" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAA</genome_strand>
        <mrna_strand>AAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTGTCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717001" ref_strand="+" ref_description="SGN-E717001 [FB18CF05]">
      <seq>tgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaaaattgggagccgggggtgattcccaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaaaatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgcaaaccttttaaacgtctacatcgtttgggttctaagggtggtcatgtacatgagccttttgaatgttctctttactaagtaagggggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcaaaaatggatgtgcttgctcttgctaaaaaaaaaaaaaaaaaaaaattcttggggggggggccgggaccccatttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4056" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4356" g_stop="4520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="249" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="332" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6699" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="670" r_length="338" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="690"/>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E717001" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4356" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAG</genome_strand>
        <mrna_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAAATTGGGAGCCGGGGGTGATTCCCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAAATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGCAAACCTTTTAAACGTCTACATCGTTTGGGTTCTAAGGGTGGTCATGTACATGAGCCTTTTGAATGTTCTCTTTACTAAGTAAGGGGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCAAAAATGGATGTGCTTGCTCTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716994" ref_strand="+" ref_description="SGN-E716994 [FB18CE10]">
      <seq>tgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaaaattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaaaatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatctttcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttacccagaaagggggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcaaaaatggatgtgcttgctcttgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4056" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4356" g_stop="4520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="249" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="332" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6699" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="670" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="683"/>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E716994" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4356" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAG</genome_strand>
        <mrna_strand>TGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAAATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAAATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCTTTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTACCCAGAAAGGGGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCAAAAATGGATGTGCTTGCTCTTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336549" ref_strand="+" ref_description="SGN-E336549 [cTOE-4-E15]">
      <seq>tttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4069" stop="6813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4369" g_stop="4520" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="236" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="319" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6513" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="471" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E336549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4369" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTG</genome_strand>
        <mrna_strand>TTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714665" ref_strand="+" ref_description="SGN-E714665 [FB12AD06]">
      <seq>ttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccgggggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgaaaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcaaaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgaaaaagctggatgaagatactgaaaatctgtcacatcaaaaggtacctactgaactgaaaaaagcgattatgcaagctcgacaggataaaaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatctttcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtaaaccttttgaacgtctacatcgtttgggttctaagtggggtcatgtacatgacccttttgaatgttttctttacccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaattctttggggggggggccgggacccctttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4072" stop="6977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4372" g_stop="4520" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="233" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="316" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6676" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="631" r_length="315" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="657"/>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E714665" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4372" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAA</genome_strand>
        <mrna_strand>TTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGGGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAAAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAAAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAAAAAGCTGGATGAAGATACTGAAAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAAAAAGCGATTATGCAAGCTCGACAGGATAAAAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCTTTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTAAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGGGGTCATGTACATGACCCTTTTGAATGTTTTCTTTACCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291198" ref_strand="+" ref_description="SGN-E291198 [cLET-2-E19]">
      <seq>tcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4073" stop="6812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4373" g_stop="4520" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="232" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="315" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6512" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="466" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E291198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4373" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGT</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746567" ref_strand="-" ref_description="SGN-E746567 [GI|47104183]">
      <seq>caaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4074" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4374" g_stop="4520" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="314" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6700" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="653" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E746567" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746567" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4374" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGA</genome_strand>
        <mrna_strand>CAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248206" ref_strand="+" ref_description="SGN-E248206 [cLEF-55-O2]">
      <seq>atggccggattgtcacaagattgggagggggtggtgattcgcaagaaagcgcctaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggttcctactagaactgaataaagcaatctttcaagattaccccgataagacacttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4088" stop="6864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4388" g_stop="4520" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="217" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="301" r_length="84" r_score="0.807"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6564" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="504" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E248206" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4388" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACT-GAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTG</genome_strand>
        <mrna_strand>ATGGCCGGATTGTCACAAGATTGGGAGGGGGTGGTGATTCGCAAGAAAGCGCCTACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTTCCTACTAGAACTGAATAAAGCAATCTTTCAAGATTACCCCGATAAGACACTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711673" ref_strand="+" ref_description="SGN-E711673 [FB02CF05]">
      <seq>ccgtttgagtctagtagcacaacgttgaacacgagaaagctgcatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="5420" stop="7000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5715" g_stop="5781" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="150" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6362" g_stop="6710" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="499" r_length="349" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E711673" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5715" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGA</genome_strand>
        <mrna_strand>CCGTTTGAGTCTAGTAGCACAACGTTGAACACGAGAAAGCTGCATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389519" ref_strand="+" ref_description="SGN-E389519 [TUS-4-E17](-)">
      <seq>tggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctagatgtttaaggattgcaattaggacaattcagcaaatttgattatccagacatcttaatcttaatgaacatgattgttcacaagatataaagtttattttgccataccaacgtcctttgcatttaggaattgttaagttactaattcagattaaaagatgagaattggttaatgaccttaaaatagatcagttacattatgtaattgtatttctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="5455" stop="7218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5755" g_stop="5781" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="110" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6362" g_stop="6918" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="667" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E389519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5755" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</genome_strand>
        <mrna_strand>TGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728374" ref_strand="+" ref_description="SGN-E728374 [LA17CE03]">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="17817" stop="19071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18117" g_stop="18771" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E728374" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18117" e_stop="18771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAT-ATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="19981" stop="19050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19682" g_stop="19351" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19682" e_stop="19351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATC-AAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="19081" stop="20342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19381" g_stop="20042" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19381" e_stop="20042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGA-CTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="21785" stop="20599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21485" g_stop="20899" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21485" e_stop="20899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="21785" stop="20599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21485" g_stop="20899" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21485" e_stop="20899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="21785" stop="20632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21485" g_stop="20932" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21485" e_stop="20932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="22230" stop="21089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21930" g_stop="21389" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21930" e_stop="21389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATAC-CCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="24703" stop="23476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24403" g_stop="23776" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24403" e_stop="23776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="24645" stop="23501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24353" g_stop="23801" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24353" e_stop="23801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="24743" stop="23506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24443" g_stop="23806" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24443" e_stop="23806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="24703" stop="23528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24403" g_stop="23828" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24403" e_stop="23828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="25319" stop="24009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25019" g_stop="24309" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25019" e_stop="24309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="27179" stop="26030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26875" g_stop="26330" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26875" e_stop="26330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG--AA-ATAT--TTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="27078" stop="26097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26765" g_stop="26397" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26765" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="28479" stop="27109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28171" g_stop="27409" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28171" e_stop="27409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537994" ref_strand="+" ref_description="SGN-E537994 [TUS-56-O5](-)">
      <seq>aaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagacattggggtttctttgaaggtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaggttgatgaatcactaagagcagaggatgtagaggtatattatgatccaacggaactttttggtgaactactcaaaggaccaaaaatttctgaatctaatgttgagcaccactagtcatggtttattgattttatgaagtttttttttttatgttttttcataaaataaactttctctgtttggatcgcacaatattacaatacaatgttacaaagtttgtttggattgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="37467" stop="33618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37167" g_stop="37069" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35183" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="398" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34150" g_stop="33910" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="639" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E537994" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37167" e_stop="37069"/>
          <exon e_start="35481" e_stop="35183"/>
          <exon e_start="34150" e_stop="33910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</genome_strand>
        <mrna_strand>AAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339470" ref_strand="+" ref_description="SGN-E339470 [cTOF-4-H18]">
      <seq>aagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaaggactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagaacattgnggtttctttgaaggtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaggttgatgaatcactaagagcagaggatgtagaggtatattatgatccaacggaaactttttggtgaactactcaaaggaccaaaaatttctgaatctaatgttgagcaccacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38131" stop="33738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37831" g_stop="37740" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37201" g_stop="37069" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="225" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35183" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="525" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34150" g_stop="34038" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="639" r_length="114" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E339470" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37831" e_stop="37740"/>
          <exon e_start="37201" e_stop="37069"/>
          <exon e_start="35481" e_stop="35183"/>
          <exon e_start="34150" e_stop="34038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAG-ACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGG-AACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTA</genome_strand>
        <mrna_strand>AAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGAACATTGNGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537997" ref_strand="+" ref_description="SGN-E537997 [TUS-56-O5]">
      <seq>taaaaacttagaaatatggctagtgagaaggaaaaaattaaaattacaagtgataagtataggctattcttgcatgaagatcaagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaaggactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagacattggggtttctttgaaagtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaagttgatgaatcactaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38213" stop="33834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37913" g_stop="37740" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37201" g_stop="37069" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="307" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35183" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="606" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34150" g_stop="34134" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="623" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E537997" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37913" e_stop="37740"/>
          <exon e_start="37201" e_stop="37069"/>
          <exon e_start="35481" e_stop="35183"/>
          <exon e_start="34150" e_stop="34134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAG</genome_strand>
        <mrna_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAAGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267847" ref_strand="+" ref_description="SGN-E267847 [cLEI-12-E10]">
      <seq>aaaaacttagaaatatggctagtgagaaggaaaaaattaaaattacaagtgataagtataggctattcttgcatgaagatcaagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaacgactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttacgacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagctttgccaagaagatttgcttgggaagtgatcagtgtatacacagggccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38212" stop="34990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37912" g_stop="37740" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37201" g_stop="37069" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="306" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35290" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="498" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E267847" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37912" e_stop="37740"/>
          <exon e_start="37201" e_stop="37069"/>
          <exon e_start="35481" e_stop="35290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCAC</genome_strand>
        <mrna_strand>AAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAACGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTACGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTGCCAAGAAGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574565" ref_strand="+" ref_description="SGN-E574565 [34053]">
      <seq>ttttagagagagaaaagtattaaaacttgaagtagttgaaatatggctggtgagaaggaaacaattaaagttgtaagtgataagtataggctattcttgcatgaagatcaagctgctgctgcaggaaccatccagtggagacatggtgatcctccaagctatgaaagtgttaataagctctttgaacaaggaaggaccaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacacaagactcgcataaaagactttaggacaattaatcctgaaaaattcaagctctttgtaaatggaagagatggattgtcagccgaagagacattaaaagtgggaagctacaatgcgctattgaagagttcaatgccagatgaattcaaatattacaaagcagatgaagagacctttgaatcatctcacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcaatgtatattcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38221" stop="34994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37902" g_stop="37740" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="201" r_length="163" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37201" g_stop="37069" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="334" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35294" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="522" r_length="188" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E574565" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37902" e_stop="37740"/>
          <exon e_start="37201" e_stop="37069"/>
          <exon e_start="35481" e_stop="35294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGG</genome_strand>
        <mrna_strand>AAATATGGCTGGTGAGAAGGAAACAATTAAAGTTGTAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGCAGGAACCATCCAGTGGAGACATGGTGATCCTCCAAGCTATGAAAGTGTTAATAAGCTCTTTGAACAAGGAAGGACCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACACAAGACTCGCATAAAAGACTTTAGGACAATTAATCCTGAAAAATTCAAGCTCTTTGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATGGATTGTCAGCCGAAGAGACATTAAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAGATGAATTCAAATATTACAAAGCAGATGAAGAGACCTTTGAATCATCTCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAATGTATATTCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212356" ref_strand="+" ref_description="SGN-E212356 [cLEC-74-E22]">
      <seq>acaagctttgtatcttggtcgacactatcgccgtgcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagaactgaaggagtgggatcaatgccttctaatgctgggtgatgctaaagtggatgaacatggtaatattactgatacaagagagttcaacagcatgtacttggacaaggatggtgaagatcgtgaaataaatattttatcagcaatctgctttttgaggggcaaggcatatgaagcgttggagaatcgtgcacaggctcgactatggtataaagctgctatcaaggctgatcctttgtgttatgaggcattggaatgtctgatagagaatcacatgctcacttgtgatgaagagagaaccctgctctcatgtttgcagtttggtcctgaagatgggtggctttcttcattctattcttgtttgataaagaagtatgataaagaaaatgtggtggaagctaaatttagagagctggaacagagtggacctaatacaaagctttcggacaaatctgttttgtgtacgcttaaatccaactctgatcttttagcctgcaaagctgagtattatcatcaatgcggtgaatatcagaaatgctttgaactaacatctgaattgcttgaaaaggatccgttccaccctcagtgtaccctggtgcacttagcagcagcaatggagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50544" stop="44625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50244" g_stop="50136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48236" g_stop="48102" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47996" g_stop="47923" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="318" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47922" i_stop="46933" i_length="990">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46932" g_stop="46893" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="358" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46892" i_stop="46618" i_length="275">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46617" g_stop="46572" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="404" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46571" i_stop="45682" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45681" g_stop="45602" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="484" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45601" i_stop="45339" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45338" g_stop="45157" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="666" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45156" i_stop="44994" i_length="163">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44993" g_stop="44925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="735" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E212356" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50244" e_stop="50136"/>
          <exon e_start="48236" e_stop="48102"/>
          <exon e_start="47996" e_stop="47923"/>
          <exon e_start="46932" e_stop="46893"/>
          <exon e_start="46617" e_stop="46572"/>
          <exon e_start="45681" e_stop="45602"/>
          <exon e_start="45338" e_stop="45157"/>
          <exon e_start="44993" e_stop="44925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATGGTTAGTGATAGTTTGGATATAAGACACTGATGTTCATAGACATAATTTTGGATTACAGATTTGGTCTTAACAACCTCCGTACCTCCACGAGGTAGGGGTAAGGTCTGCATACACTCTACCCTCCTAGATCCCACTTTTGTGATTTCACAAGGTATGTTGTTGTAGATTTGGTCTGAATTTCTTGTGGGTCACGGGAGAGATTTCTCGGTGCTATAGTTTTCTGTTTGGCTGGTAATCATGTTTTCACACTAGTTATGAGGGAGAAGAAATGATAGAAAGTATAGGAAGTGAGGCAAAATGACTTTCCACATTTAATTCGAACATAGTACGCCTTAGCAAAATCGAATAAGCAAAGAATGAAGAAGTTTAACAGTGTTATTTGGGTTCCTTGAGATAAAAGTGGTAAATACTCTAAACCACTTCTATCTCATCTTTTCTCTTCTAAAAAAAAGATAAAAGTGAGTTAGAGCATTTAAATTCCTTACATCTGATTTCTGGTAGTTTCTTAAACTGAAAAGAATAATTGGTGTTGAAGTAATTAACTTTTGACTATAGCCTATCATACGGATGAACCTTTTGTTTACAGACCCCATCCTTTCCCTCGCGTTGGCTCCTTCATTTGTTGTTTGTTAATACAATGAAGAAATTATTGGTTCCCCTTAATATAACTGTAGGAACAAATTATCCTCTTCTTTTGTCTTGTGTTCAGCATCTGTGATCATCAGTGATCTCATCTCCTTACCTCTCATTCCTTGCTTTCTTGTGCATAGAATTAGGTTAGAAAATGAATCTTGAAGATCCTATCTGATAAAGAGATGTATTCAGTCTCAAGTTAACTGTATTGCAAGAGATATCATTGAATCTGATGTTAAGGAATTACAATTCCATCATGTGCTGAGCTGTCTTTCCCTACTTCTTAATATTGATCTAGCAGTTAAATATTATCATCGTAAGGAGCTGACTTGTTATAACTCCGTGACACTTTCTTAGGTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAGGTATGTAAGTTTTGGTATTCTAGTCATTCTTCTTTAATTGATGGAAGTCTTTATCTAGGGGTTGGTTAGTATGTCTCTTGGTTTTTTCTCCTCCTTTGTTATGGCTAAGGAATTAGTCTTGTCAATTACTGTATTAGAGGCCAGATTTATATGGTAAAACTCTGGAAGATACTTAGTTATCTTATATTCATTTTCCTTATCGTAGAAGCATCATAGGTCCTTCATGCTTTCAATTCCATGACAATCTTATGAAATTTATCTATGCTCATTTTCAGGCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAGGTGAGAACCTTTGCTGTTTAAAGTGTATCTTCTTGGAACTATGAAATAGTACAAGCTAATTTGTAGAATCAAACTGTCTTAAAACAATGCAAGTACTTTTGGAGACCGTGTTTATTGTACTCTAAAAGTCCTTGGTGTGTGTTTTTATAAGTAATGAACATTCTCTTTCTTTTAACCAAACATTCTATAGCTGTTCAGTGCTGTTAAAGGCCCGTAATGTGCTCAAACTCTGAAGCTGTGCAGGGGCAGTTGGCTGCTTGTGTTGCTTAGGCAGTATCTATGTAGGCCCCAAGACTAAGGGATCCTCTTCACCACCTATAAGCTCGGTCTTGTAGGGAATAGAACTAAACAACATATATAACTGGAGAATACTCGTAAACCTCCTTGGCAAAGTGGTATATTAATTGATAAAGAAATGTTATATAAATATGTGAGTCATTAGAAATATAAAGTTGGAATTTTAGTAGGGAAGTAGCCACTGAGCCAATATTAGAAAACCAAACCCCCTCTTAGCATTAGAATCAGAAATTTTAAATAGTTTTCGGAACAATCGAAATGTTAAATATGCACTTAACTGTAGCTTCTCAAATTCCTTTGTCCTATAAGTATTACTCGTGCTATAGTTAATTTTTTCAGATCACATTTATAATTTTCATTTGTTTCTTTTGCACCTTTATTTACCATGGCCTGCTCTTTAATTGTGTTTTGCACTTAAAATCTTGTTGAATTTTGGCATTTTTTCTGCTTTTACCTTTTTTAATGCTATTTATTGTTGATACTATCATTGAAAACTGCCAATCTTTTAGATGATAGTATTATTGTGTTAATGTTATCTTTGTTAAAGGAATTATTATGAGAAATTGACCAATCCAGTTGCTAGTGAATTTCAGAGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAGGTAATCACTTCTTATAAGACTACATTTTATTCCATTTGATCTTCTTTATGGATCATAAACACTTAACTTTTAAGTTTCACCCAGTTGAAAAATAGAATATTGAATTTGGTACTTTATATTGATAACTAGACAGAAGCTGTACTTGAATTTTTACAGAAATGTTGAAGTGTTCTATTATTTGCGTAGAAAAATTTTAGTTTTATGTTTTGCTCATCCATTTACTCCTCAATGGAATAATTTTTTCCTTTTCCTGTGCTTCTCAGTATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGAGTAAGTTGGTAACCCACCAGAAAGGAAATTATGTCTTTTTATTCTTTTGCTAGATCTTATTGTATACTGATCACATGTATTTTGGTACCTACTTTACATCACTACATGAAATTTGGCAACTGTTTTCTTTTCCTCTTATACTTTGGTACATGATAAAATACAGATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</genome_strand>
        <mrna_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG...................................................................................................................................................................................................................................................................................GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG.......................................................................................................................................................................................................................................................................TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA...................................................................................................................................................................ATTGCTTGAAAAGGATCCGTTCCACCCTCAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451735" ref_strand="+" ref_description="SGN-E451735 [cSTS-14-G5]">
      <seq>cgaggcccgcctcttctcttctgcccaaatctgattcccaaaaccttctcaattttgaattcaaaccttgaaccaatcaaagagaaattggtgtaccaaaccaatgagggaagatgaaattgagaggctaagaggtgtggtgagggattgtgtgagtaaacatttgtattcatcagctatcttctttgctgataaagtagctgcaattacttctgacccagctgatatatacatgcaagcacaagctttgtatcttggtcgacactatcgccgggcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagagctgaaggagtgggatcaatgtcttctaatgctgggtgatgctaaagtggatgaatatggaaatattactgatacaagagagtgcaacagcatgtacttagacaaggatggtgaagatcgtgaaataaatattttatcagcaatatgctttttgaggggcaaggcttatgaagcgttggagaatcgtgcacaggctcgactatggtataaagctgctatcaaggctgatccctttgtgttatgaggcattggaatgtctgatagagaatcacatgctcacttgtgatgaagagaaaaccctgctctcatgtttgcaatttggtcctgaaaatgggtggctctcttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50772" stop="45324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50479" g_stop="50136" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48236" g_stop="48102" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="484" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47996" g_stop="47923" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="558" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47922" i_stop="46933" i_length="990">
            <donor d_prob="0.104" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46932" g_stop="46893" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="599" r_length="41" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46892" i_stop="46618" i_length="275">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46617" g_stop="46572" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="645" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46571" i_stop="45682" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45681" g_stop="45624" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="703" r_length="58" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E451735" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50479" e_stop="50136"/>
          <exon e_start="48236" e_stop="48102"/>
          <exon e_start="47996" e_stop="47923"/>
          <exon e_start="46932" e_stop="46893"/>
          <exon e_start="46617" e_stop="46572"/>
          <exon e_start="45681" e_stop="45624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCCTCCCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAAC-T-CTCAATTTTGAATTCAAAG-TTGAA-CAATCGAAGAGAAATTTGTATA-CAAA-CAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATGGTTAGTGATAGTTTGGATATAAGACACTGATGTTCATAGACATAATTTTGGATTACAGATTTGGTCTTAACAACCTCCGTACCTCCACGAGGTAGGGGTAAGGTCTGCATACACTCTACCCTCCTAGATCCCACTTTTGTGATTTCACAAGGTATGTTGTTGTAGATTTGGTCTGAATTTCTTGTGGGTCACGGGAGAGATTTCTCGGTGCTATAGTTTTCTGTTTGGCTGGTAATCATGTTTTCACACTAGTTATGAGGGAGAAGAAATGATAGAAAGTATAGGAAGTGAGGCAAAATGACTTTCCACATTTAATTCGAACATAGTACGCCTTAGCAAAATCGAATAAGCAAAGAATGAAGAAGTTTAACAGTGTTATTTGGGTTCCTTGAGATAAAAGTGGTAAATACTCTAAACCACTTCTATCTCATCTTTTCTCTTCTAAAAAAAAGATAAAAGTGAGTTAGAGCATTTAAATTCCTTACATCTGATTTCTGGTAGTTTCTTAAACTGAAAAGAATAATTGGTGTTGAAGTAATTAACTTTTGACTATAGCCTATCATACGGATGAACCTTTTGTTTACAGACCCCATCCTTTCCCTCGCGTTGGCTCCTTCATTTGTTGTTTGTTAATACAATGAAGAAATTATTGGTTCCCCTTAATATAACTGTAGGAACAAATTATCCTCTTCTTTTGTCTTGTGTTCAGCATCTGTGATCATCAGTGATCTCATCTCCTTACCTCTCATTCCTTGCTTTCTTGTGCATAGAATTAGGTTAGAAAATGAATCTTGAAGATCCTATCTGATAAAGAGATGTATTCAGTCTCAAGTTAACTGTATTGCAAGAGATATCATTGAATCTGATGTTAAGGAATTACAATTCCATCATGTGCTGAGCTGTCTTTCCCTACTTCTTAATATTGATCTAGCAGTTAAATATTATCATCGTAAGGAGCTGACTTGTTATAACTCCGTGACACTTTCTTAGGTATAAAGCTGCTATCAAGGCTGAT-CCTTTGTGTTATGAGGTATGTAAGTTTTGGTATTCTAGTCATTCTTCTTTAATTGATGGAAGTCTTTATCTAGGGGTTGGTTAGTATGTCTCTTGGTTTTTTCTCCTCCTTTGTTATGGCTAAGGAATTAGTCTTGTCAATTACTGTATTAGAGGCCAGATTTATATGGTAAAACTCTGGAAGATACTTAGTTATCTTATATTCATTTTCCTTATCGTAGAAGCATCATAGGTCCTTCATGCTTTCAATTCCATGACAATCTTATGAAATTTATCTATGCTCATTTTCAGGCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAGGTGAGAACCTTTGCTGTTTAAAGTGTATCTTCTTGGAACTATGAAATAGTACAAGCTAATTTGTAGAATCAAACTGTCTTAAAACAATGCAAGTACTTTTGGAGACCGTGTTTATTGTACTCTAAAAGTCCTTGGTGTGTGTTTTTATAAGTAATGAACATTCTCTTTCTTTTAACCAAACATTCTATAGCTGTTCAGTGCTGTTAAAGGCCCGTAATGTGCTCAAACTCTGAAGCTGTGCAGGGGCAGTTGGCTGCTTGTGTTGCTTAGGCAGTATCTATGTAGGCCCCAAGACTAAGGGATCCTCTTCACCACCTATAAGCTCGGTCTTGTAGGGAATAGAACTAAACAACATATATAACTGGAGAATACTCGTAAACCTCCTTGGCAAAGTGGTATATTAATTGATAAAGAAATGTTATATAAATATGTGAGTCATTAGAAATATAAAGTTGGAATTTTAGTAGGGAAGTAGCCACTGAGCCAATATTAGAAAACCAAACCCCCTCTTAGCATTAGAATCAGAAATTTTAAATAGTTTTCGGAACAATCGAAATGTTAAATATGCACTTAACTGTAGCTTCTCAAATTCCTTTGTCCTATAAGTATTACTCGTGCTATAGTTAATTTTTTCAGATCACATTTATAATTTTCATTTGTTTCTTTTGCACCTTTATTTACCATGGCCTGCTCTTTAATTGTGTTTTGCACTTAAAATCTTGTTGAATTTTGGCATTTTTTCTGCTTTTACCTTTTTTAATGCTATTTATTGTTGATACTATCATTGAAAACTGCCAATCTTTTAGATGATAGTATTATTGTGTTAATGTTATCTTTGTTAAAGGAATTATTATGAGAAATTGACCAATCCAGTTGCTAGTGAATTTCAGAGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATT</genome_strand>
        <mrna_strand>CGAGGC-CCGCCTCTTCTCTTCTGCCCAAATCTGATTCCCAAAACCTTCTCAATTTTGAATTCAAACCTTGAACCAATCAAAGAGAAATTGGTGTACCAAACCAATGAGGGAAGATGAAATTGAGAGGCTAAGAGGTGTGGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCTGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGGGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCTGAAGGAGTGGGATCAATGTCTTCTAATGCTGGGTGATGCTAAAGTGGATGAATATGGAAATATTACTGATACAAGAGAGTGCAACAGCATGTACTTAGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATATGCTTTTTGAGGGGCAAGGCTTATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCTGCTATCAAGGCTGATCCCTTTGTGTTATGAG...................................................................................................................................................................................................................................................................................GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAACCCTGCTCTCATGTTTGCAATTTGGTCCTGAAAATGGGTGGCTCTCTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424118" ref_strand="+" ref_description="SGN-E424118 [STM-43-G3]">
      <seq>ccgctcttctcttctgcccaaatctgattcccaaaactctcaattttgaattcaaacttgaacaatcaaagagaaattggtgtacaaacaatgagggaagaagaaattgagaggctaagaggtgtggtgagggattgtgtgagtaaacatttgtattcatcagctatcttctttgctgataaagtagctgcaattacttctgacccagctgatatatacatgcaagcacaagctttgtatcttggtcgacactatcgccgggcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagagctgaaggagtgggatcaatgtcttctaatgctgggtgatgctaaagtggatgaatatggaaatattactgatacaagagagtgcaacagcatgtacttagacaaggatggtgaagatcgtgaaataaatattttatcagcaatatgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50771" stop="47800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50471" g_stop="50136" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48236" g_stop="48102" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="471" r_length="135" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47996" g_stop="47975" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="493" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E424118" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50471" e_stop="50136"/>
          <exon e_start="48236" e_stop="48102"/>
          <exon e_start="47996" e_stop="47975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAACTCTCAATTTTGAATTCAAAGTTGAACAATCGAAGAGAAATTTGTATACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTT</genome_strand>
        <mrna_strand>CCGCTCTTCTCTTCTGCCCAAATCTGATTCCCAAAACTCTCAATTTTGAATTCAAACTTGAACAATCAAAGAGAAATTGGTGTACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTGGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCTGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGGGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCTGAAGGAGTGGGATCAATGTCTTCTAATGCTGGGTGATGCTAAAGTGGATGAATATGGAAATATTACTGATACAAGAGAGTGCAACAGCATGTACTTAGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATATGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341676" ref_strand="+" ref_description="SGN-E341676 [cTOF-9-A17]">
      <seq>ttcctttgaacaatttaggaatgccgaaaatggagaaagtgaaaaaggtatcactctttcagtctctcttctctacttcgccagcaaaaagatgctaaaatcgcccttcaactcttccttaatcctaatcccagccatggaagcgacaaaactactaaaccttttcgttattctccactctgttatgatctcatcatctgcaagctcggcagaggtaaactctttcaagaaatggaaaaaatcatcgataaattgagacaggacactcgagtttctctcaacgaagttgttttctgcaatgttatttctttttatggaagagcacatttacctgataaggctcttcatatgtttaatgaaataccctcttttcgctgctatagaagtataaaatctgttaatagcttgttgaatgcacttttagcttgtaaagaatacagcaagattggtgaaatgttaaacaactttgaaaattacgcaaccccagatgtttgtacgtttaatatattgatgaatgcgtgttgtttgtgtggtgatttggggtggtgcacgggaggtgtttgatgaaatgtgtgagagaagaattcagccaaatgtggtgactttggggacgttgattaatgggcttttgtgtgaatcgagaaattaacgaggcgtttaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="51062" stop="52323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51362" g_stop="52023" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E341676" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51362" e_stop="52023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGAACAATTTAGGAATG-CGAAAATGGAGAAAGTGAAAAAGGTATCA-TCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTT-GGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGC-TTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</genome_strand>
        <mrna_strand>TTCCTTTGAACAATTTAGGAATGCCGAAAATGGAGAAAGTGAAAAAGGTATCACTCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAAGAATTCAGCCAAATGTGGTGACTTTGGGGACGTTGATTAATGGGCTTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618839" ref_strand="+" ref_description="SGN-E618839 [69522]">
      <seq>ctgctatgaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagctttggagttgttttattagagattgtcagtgggaaaagcaacacaaactacaggccaaaagaggaatttgtttaccttcttgactgggcttatgtcctacaagaacagggaaatctgttagaactagtggatccatgtctcggtacccattactccaaaaaagaggcaatgcggatgataaatatttctcttttgtgcacaaatccctctcctactctccgaccatccatgtcttcagtagtgagtatgctcgaaggaaaactccccgtgcaagcaaccaataatcaagctcactacatcagacgatgaaatgagatttaaatcgtttgagaaactttcacatgaccagtcaaaacaacacaaagtatcaaacatactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="64212" stop="62594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63913" g_stop="63876" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63790" g_stop="63553" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="276" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63552" i_stop="63425" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63424" g_stop="63274" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="427" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63273" i_stop="63183" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63182" g_stop="62894" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="721" r_length="294" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E618839" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63913" e_stop="63876"/>
          <exon e_start="63790" e_stop="63553"/>
          <exon e_start="63424" e_stop="63274"/>
          <exon e_start="63182" e_stop="62894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTTGATCCACGTCTCGGTACCAATTACTCCAAAAAAGAGGCAATGCGGATGATAAACGTGTCTCTTTTGTGCACGAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCTGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGC-ACCAATAATCAAACGTACTACATCAGACGATGAAATGAGATTTAAATCGTTCGAGAAGCTTTCACATGA-CAGTC-AAACAACAC-AAGTATC-AACATACTCTC</genome_strand>
        <mrna_strand>CTGCTATGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCAAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTGGATCCATGTCTCGGTACCCATTACTCCAAAAAAGAGGCAATGCGGATGATAAATATTTCTCTTTTGTGCACAAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCAGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGCAACCAATAATCAAGCTCACTACATCAGACGATGAAATGAGATTTAAATCGTTTGAGAAACTTTCACATGACCAGTCAAAACAACACAAAGTATCAAACATACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434323" ref_strand="+" ref_description="SGN-E434323 [STM-59-D8]">
      <seq>ataacttcgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggagtactcgctgatggtgccatcatagctgttaagcagctgtcttccaagtcgaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagcttttggagttgttttattagagattgtcagtgggaaaagcaacacaaactacaggccaaaagaggaatttgtttaccttcttgactgggcttatgtcctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="64620" stop="62961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64320" g_stop="64265" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64086" g_stop="63876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="267" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63790" g_stop="63553" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="505" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63552" i_stop="63425" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63424" g_stop="63274" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="657" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63273" i_stop="63183" i_length="91">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63182" g_stop="63169" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="671" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E434323" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64320" e_stop="64265"/>
          <exon e_start="64086" e_stop="63876"/>
          <exon e_start="63790" e_stop="63553"/>
          <exon e_start="63424" e_stop="63274"/>
          <exon e_start="63182" e_stop="63169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGC-TTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTACA</genome_strand>
        <mrna_strand>ATAACTTCGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGAGTACTCGCTGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCGAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCAAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410502" ref_strand="+" ref_description="SGN-E410502 [PPI-17-A6]">
      <seq>ataacttcgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggagtactcgctgatggtgccatcatagctgttaagcagctgtcttccaagtcgaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgaccagaggttgaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtacaccgagatataaagtgtaccaatgtgcttcttgataaggatctgaacgctaagatttcagattttggattggctaaattagatgaagaagagaacactcatattagcacccgaattgctggaacagtaggttatatggctccggagtatgcaatgagaggctacttgacagataaagctgatgtttatagcttttggagttgttttatttagagattgtcagtgggaaaagcaacacaaactacaggcccaaagaggaatttgtttaccttcttgactgggcttatgtccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="64620" stop="62963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64320" g_stop="64265" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64086" g_stop="63876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="267" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63790" g_stop="63553" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="505" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63552" i_stop="63425" i_length="128">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63424" g_stop="63274" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="658" r_length="153" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63273" i_stop="63183" i_length="91">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63182" g_stop="63171" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="670" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E410502" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64320" e_stop="64265"/>
          <exon e_start="64086" e_stop="63876"/>
          <exon e_start="63790" e_stop="63553"/>
          <exon e_start="63424" e_stop="63274"/>
          <exon e_start="63182" e_stop="63171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGTGTAAGCCTTCTTATCATAACTGTCTCTGTACTATCATGTGATGAGAGAGTTACAGTTCTGTGCGTTTAAATTTGTTCACTACTATGGTTACTTTGAAGTATCTTACGTTTCGTTTTCTTTTCTTGAAGAGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGC-TTTGGAGTTGTTTTA-TTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGGGTAAACTACCTTCTCTACTTTCTTAAACTCTGTATACGTTAGAACTAGACAAACAAATTGAAACGAAGGGAGCATTTGCTTTGTTATGCAGGCTTACGTCCTA</genome_strand>
        <mrna_strand>ATAACTTCGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGAGTACTCGCTGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCGAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGACCAGAGGTTGAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTACACCGAGATATAAAGTGTACCAATGTGCTTCTTGATAAGGATCTGAACGCTAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT................................................................................................................................AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTTGGAGTTGTTTTATTTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGGCCCAAAGAGGAATTTGTTTACCTTCTTGACTGG...........................................................................................GCTTATGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214137" ref_strand="+" ref_description="SGN-E214137 [cLEC-80-J16]">
      <seq>ggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgatcagagattaaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtccatagagatataaagtgtacgaatgtgcttctttgataggatctgaacgcgaagatttcagattttggattggctaaattagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65133" stop="63295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64833" g_stop="64713" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64383" g_stop="64265" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="240" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64086" g_stop="63876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="451" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63790" g_stop="63595" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="647" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E214137" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64833" e_stop="64713"/>
          <exon e_start="64383" e_stop="64265"/>
          <exon e_start="64086" e_stop="63876"/>
          <exon e_start="63790" e_stop="63595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</genome_strand>
        <mrna_strand>GGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTTGATAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348646" ref_strand="+" ref_description="SGN-E348646 [cTOF-30-B21]">
      <seq>gctaacggtgttgggaaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagcntttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgatcagagattaaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65393" stop="63410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65093" g_stop="64937" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64856" g_stop="64713" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="301" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64383" g_stop="64265" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="419" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64086" g_stop="63876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="631" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63790" g_stop="63710" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="712" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E348646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65093" e_stop="64937"/>
          <exon e_start="64856" e_stop="64713"/>
          <exon e_start="64383" e_stop="64265"/>
          <exon e_start="64086" e_stop="63876"/>
          <exon e_start="63790" e_stop="63710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGC-TTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACC</genome_strand>
        <mrna_strand>GCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAG-TTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCNTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248305" ref_strand="+" ref_description="SGN-E248305 [cLEG-1-G11]">
      <seq>aaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65378" stop="63578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65078" g_stop="64937" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64856" g_stop="64713" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="286" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64383" g_stop="64265" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="405" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64086" g_stop="63878" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="614" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E248305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65078" e_stop="64937"/>
          <exon e_start="64856" e_stop="64713"/>
          <exon e_start="64383" e_stop="64265"/>
          <exon e_start="64086" e_stop="63878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTT</genome_strand>
        <mrna_strand>AAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558112" ref_strand="+" ref_description="SGN-E558112 [17017]">
      <seq>aaatattatgggctttgcctactaggaggtagctacagagtgcggcttcactttgctgaaataatgttttctaatgactcaacatatagcagccttggaaggcggatatttgatgtagcaattcaagggagagtagttttgaaggatttcaatatcatggaggaagctaacggtgttggagaagtcattatcaaggactttgatgatattactgttagtagcactctggagattcacttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggacctctgatttcagctatctcagtgacaccaaacttcaaaacaggtcgcaggttacctgtcggagctgttattggcattgtactcgcttcaattgtggtggttctgatagttttattttctctgtggaagaaaggcatttttggagggaaaattaatcaagaagaattagaactcagagcccttggatttacaaacaggtcattttagacttagacaaattaaagctgctacaaataacttttgatcctgggcaacaaaattggtgaaggagggtttggaccagtttaccaaggtgtcctcaccgatgggcagtcatagctgttaagcagtctccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65698" stop="63740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65398" g_stop="65273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65272" i_stop="65133" i_length="140">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65132" g_stop="64937" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="322" r_length="196" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64856" g_stop="64713" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="460" r_length="138" r_score="0.861"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.880" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64383" g_stop="64265" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="582" r_length="122" r_score="0.916"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64086" g_stop="64040" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="628" r_length="46" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E558112" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65398" e_stop="65273"/>
          <exon e_start="65132" e_stop="64937"/>
          <exon e_start="64856" e_stop="64713"/>
          <exon e_start="64383" e_stop="64265"/>
          <exon e_start="64086" e_stop="64040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAAGTAAGTTTGAGGCCTAACTTCTTTTGTAAATAATATGTAATCTAGAAAGTTGATTTATTTAGTTCTGATATGATCGGCAGCTTTCCAATTTAATATTTAAGGTACCAATTTTAATGTGGTATATTTTGATTTCTTACCAGGGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTT-GATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAAC-TTTGATCCT-GCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTC</genome_strand>
        <mrna_strand>AAATATTATGGGCTTTGCCTACTAGGAGGTAGCTACAGAGTGCGGCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATTCAA............................................................................................................................................GGGAGAGTAGTTTTGAAGGATTTCAATATCATGGAGGAAGCTAACGGTGTTGGAGAAGTCATTATCAAGGACTTTGATGATATTACTGTTAGTAGCACTCTGGAGATTCACTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCTCTGATTTCAGCTATCTCAGTGACACCAA................................................................................ACTTCA-A----A-ACAGGTCGCAGGTTACCTGTCGGAGCTGTTATTGGCATTGTACTCGCTTCAATTGTGGTGGTTCTGATAGTTTTATTTTCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAATTAATCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACAAATAACTTTTGATCCTGGGCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACCAA..................................................................................................................................................................................GGTGTCCTCACCGATGG-GCAGTCATAGCTGTTAAGCAGTCTCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339727" ref_strand="+" ref_description="SGN-E339727 [cTOE-16-M14]">
      <seq>tccgtcatatttttcttcgccctctgacagatgggctttcagcagttcaggagtgtacgtgggtcttcaagctgccagttatattgcatcaaatacattttcactggatgtgtccggtcctgacttctacaatacagcacgccttgcccctaattccctcaaatattatgggctttgcctacaaggaggtagctacagagtgcgccttcactttgctgaaataatgttttctaatgactcaacatatagcagccttggaaggcggatatttgatgtagcaatacaagggagagtagttttgagggatttcaacattatggaggaagctaacggtgttgggaaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="65858" stop="64047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65558" g_stop="65273" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65272" i_stop="65133" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65132" g_stop="64937" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="482" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64856" g_stop="64713" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="626" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64383" g_stop="64347" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="663" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E339727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65558" e_stop="65273"/>
          <exon e_start="65132" e_stop="64937"/>
          <exon e_start="64856" e_stop="64713"/>
          <exon e_start="64383" e_stop="64347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAAGTAAGTTTGAGGCCTAACTTCTTTTGTAAATAATATGTAATCTAGAAAGTTGATTTATTTAGTTCTGATATGATCGGCAGCTTTCCAATTTAATATTTAAGGTACCAATTTTAATGTGGTATATTTTGATTTCTTACCAGGGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAG</genome_strand>
        <mrna_strand>TCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA............................................................................................................................................GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365538" ref_strand="+" ref_description="SGN-E365538 [cLPT-12-O15]">
      <seq>tttgataacatgtttcttggtaacaatgcattaagcggagcaattcccagctggatgtttagtaaaagagagaacatggatatgtcatacaacaatttcacacaaatatctactccagtatgcgattcctctaccttaaacttagctgccagctactccgatacaatgaacaacaccacggatgcctggtgttctatgaaacccctcatttgtcccacagacacgaaatatacttcactattcataaactgtggaggacctagaacttcatttgagggaaataattatgaggcagacacgaccaatagaggtccgtcatatttttcttcgccctccgacagatgggctttcagcagttcacgagtgtacgtgggtcttcaagctgccagctatattgcatcaaatacattttcactggatgtgtccggtcctgacttctacaatacagcacgccttgcccctaattccctcaaatattatgggctttgcctacaaggaggtagctacagagtgcgccttcactttgctgaaataatgttttctaatgactcaacatatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66751" stop="65010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66569" g_stop="66559" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66558" i_stop="66450" i_length="109">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66449" g_stop="66384" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66383" i_stop="66187" i_length="197">
            <donor d_prob="0.288" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66186" g_stop="66127" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66126" i_stop="66014" i_length="113">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66013" g_stop="65972" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="179" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65971" i_stop="65875" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65874" g_stop="65825" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="229" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65824" i_stop="65641" i_length="184">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65640" g_stop="65310" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="560" r_length="331" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E365538" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66569" e_stop="66559"/>
          <exon e_start="66449" e_stop="66384"/>
          <exon e_start="66186" e_stop="66127"/>
          <exon e_start="66013" e_stop="65972"/>
          <exon e_start="65874" e_stop="65825"/>
          <exon e_start="65640" e_stop="65310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAACATGTAGGTACCGTGCAGTGAAACCTTTACAAGTTGAAGCATAAATCTTGTACATTCTTTTCTCAAAGTTTTCATTCGGTTATAACAAGCAAAAGTTTTATCCGCGATGTAGGTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACATGTTGGTATTTGCTCAATTTGTTCCGATTTCCTCGTCTTAGTAGTAAACTTTGGTTATTATCACAGTTAGCTCCCAAACAAAAATGCCACACTTCAAAGCTAAAGTTTGCCCCCGAAACTTTTGTTTGCTGCAAGGACGCATTTACAAGAATTTGATGCCTTCTATGTGCATGACAACTATAATCTTATTTTATGCAGGGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTTGTGAGCATTGTTCCTCTTTGTTTCGAAACTACATTCATATATTATTTCTTTTTTTATAAGTGAAAATTTTGGTCCTTTAACTACATAACTTACAAACCTTCCTTCTTCAACAGAAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCACGTAAGTCCTCCGAAATGTTGTCTTATGCATCAACTGCTTGTTTGTTTGATGCATCAACTGTCTATAGTTGTGTGGATTAACTTATTTGAAATTGCAGGGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAATGTAAGAGTTACAGCCTATAAACCTTTTTATTTTATACTCGGAGATTCTTAGCTTGGCCATTGAGATGGCCTGAATTAGCAGTTTGTCAAAGGACCTCACCACTGAAGTACAAAAGCATAGCCTTGGAGTTGATGTATAATTTCACAACCCTTCCTTATGTTTATGCTCTTTATGTCAATTGCAGATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAG</genome_strand>
        <mrna_strand>TTTGATAACAT.............................................................................................................GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT.....................................................................................................................................................................................................GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT.................................................................................................................AAACTTAGCTGCCAGCTACTCCGATACAATGAACAACACCAC.................................................................................................GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT........................................................................................................................................................................................ATACTTCACTATTCATAAACTGTGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCCGACAGATGGGCTTTCAGCAGTTCACGAGTGTACGTGGGTCTTCAAGCTGCCAGCTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579710" ref_strand="+" ref_description="SGN-E579710 [86842]">
      <seq>ctcttatctcctccctttttctccattcccgcctttcatttcaaggcttcaacaactataactcattcttcattaatgcattcgggattaacaacttgaaattgaatttcttcgtctgagcaataatggatactacttgtatcagattttgtgctttatttctctttctatatttgctttctacattgagatctgttgacgctcaactttggccagaagatgaagtacaagttctgcaaacaatatcatcgaaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="72263" stop="69138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71963" g_stop="71887" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71886" i_stop="71796" i_length="91">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71795" g_stop="71645" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="225" r_length="147" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71644" i_stop="69473" i_length="2172">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69472" g_stop="69439" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="259" r_length="34" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E579710" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71963" e_stop="71887"/>
          <exon e_start="71795" e_stop="71645"/>
          <exon e_start="69472" e_stop="69439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTATCTCCTCCC-TTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTTGAACACATTCTTCATTAATTGTTGGTAATTTCTACCATCTGATTTTCATTTCATTTTTATGTTTTATAAATTTAACTAACAAAATTGTTCGTCCTTTTTTCTTTTATACAGCATTCGAGACTACACAACTTGAAAAAATTGAATTTCTTCGACTGAACAATAATGGATGCTACTTGTATCAGATTTTGTGTTATATTTCTCTTTCTATATCTGCTTTCTACATTCAGATCTGTTGACGCTCAACTTTTGCCAGAAGATGAAGGTAGTTATCATTTTCTCTTCTTTTTACAGTTTCTACTAATTAGTATTGATTTTTTTCCCCTCTCTTCCTCTTTTTGATTTCCTATCGGTATTCGATTTCAATTTTCTTCGAATAAATAATAATTATTGTTAGTTAGTTGAATGATCGATGAATTAATTCCGTATTGATCTGTGATTTTATTTGTGAAATCTGATTTTTTTGGTTCTTGTTCTTTTCTGTTCCTGGGTTTGCATAGTGTGTTTACTTTTTTCTAATTTTGGGATCTGAGAAGTAGAACTTTTCTTCATAATTTCCTGTTGCTGATTGCTTCGTAGTATCCATGTCAGCTTTTTTGTTTCTTAATAATAATTCTGTAATATTTTTTATTTTTTTGGTTTATTTGGCTTTTGCTTTTTTGAAAAAATGCATAAGTAGCGCTTGACTATGACTTATATACTAGACACATCTCAATTGTTTTGAGTCAGGGAGGGTGTTACATAAGACAAAAAATGCACAAAATTACAGAAAAAAAAAGTTTTATGATGTAATAGGATTTTAGTTTAGTCGAAATGTATCTCTAGAATTTTGAACGCAGTATAAGAGGATATTTACGCATTTTTTCTTTTAATATGCTAATTTCAATACTAACTAACGATGGATAAAATTAAAATAACATTCTGAATATAATTTAAAACATGGAACAATTAAATTAATTTGATACGAAGGCAATAGTATCTTGCAGTTACTTTTTTGGTAAGAGTAAAAAATAAACTTAAAAAATATCTGTTTTAGGATAAATATAATATTAATTCAACGACTGTACGAAAAATTGACTTTTGTGTATATATTTGTTTGTGTTCGTTGATTTTTCAACATTACTAAATGGTTAACATCAAATTAGTACATAAAGTAGTGTTGCGTTATGAAAAGAAATTCCTTTTTAAACTTTTTTTTTTCAATTATTGATCTTTATATTAGTGTATGTTCTATGTGCTATGAAAATGAACTTTTTTTTTTAAATGACTTGTTAAAAATTGTTTGATAGAGTATATTAATAAAAATAATATTTATATTAGCTTTATATATTAATAGCATTTTATTTGCTATATTTTTTAATATTATGTATAACTAATACTCAGAGTAATTATATTTTCTATTACGTATCGAGGAGTTAATTATTAATACCATGAATTTTTCTATATTTTAATCTTAAAACAATTAAAGTGATGGCTGCGTTGGATGTATATTTTGTGAAGCCAATCACATGTTGTGTTTTTTAAATTAATTTGTTCTGGACTGCTTTGACTATTCATCAATTAAGATGCCAATCACATGCTGCTTTTAGCAAGTTGTTTGTTGATTTTTTTCAATCAGTTAATGCAATTTCATTTTCTCTCTTCCTTCCAACCAACCAACCAACAAAATTTACTGCTATGAGTACATCTATAAGAAAAAAAAAAGGCTTATAAATATTTTAAAATATATTTTTTATTATATTGATATGAGAAAAATTGGGTTTGAAAAGTGGATTTAGGATATAAATATAGGGTTATCTATATGTATTTCAACTATGTTTTATAGGTTTGAAATTTAATTTTATGCTTTTTTCGTTTTAAAAAGAATGACCTCTTTTTCTTTTTACTTTGTATAAAAAAGAATGATTTTTTTTTCAACAACTTTTCACGTGACATGATTAAGGTCACAAGATTAAAAGACAATTTTGTACATTTAACATAACTTTAATTTAGGACCACATGATTAAAAGTCTTATTTATTTTTTTAAATTCCGTGTCAAATTAAACTAGAACATTCTTTGTGAAAACGGAGAGAGTAACAACTACTGATCACCCTATCCTTCACCTTTTATAATCCCAATGAGGGCCCATGTTGTGTCCTTATATAAGTTATTTTTGTTAGTACTATTTATCGTGTCTAGTGTATTTTTATTAGATTTTAAAAAAAAATTATTTTTGCATTGAAACGAGGTCTATAAAAAATATCCTCTCTATCTGATAAAAGTAAGGTCTAAGTACACTCTACTCTCCTTACAGAATAATATTGCCAATGAACACTATGATGCATTATGTGTAAACTGATGATATTACCAATGGCCAATATGATACATTATGTGAAATTACATACAAAAATTTCCTTTGTAAACGATTATGAGTTAATTTAACTTTGATGTGACAGTAAGAGTTCTGCAAACAATATCATCGAAACTTCA</genome_strand>
        <mrna_strand>CTCTTATCTCCTCCCTTTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTATAACTCATTCTTCATTAATG...........................................................................................CATTCGGGATTA-ACAACTTG---AAATTGAATTTCTTCGTCTGAGCAATAATGGATACTACTTGTATCAGATTTTGTGCTTTATTTCTCTTTCTATATTTGCTTTCTACATTGAGATCTGTTGACGCTCAACTTTGGCCAGAAGATGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTTCTGCAAACAATATCATCGAAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252199" ref_strand="+" ref_description="SGN-E252199 [cLEG-8-F14]">
      <seq>cttgatgagaatttgtcttatgaggaggagcctgttgccattttagatagagaagtccgcaaattgaggtcaagggagattgcatctatcaaagttcaatggaagaatcgaccagttgaagaatccacttgggagaaggaagttgatatgcgagaaagatacccatacctgtttacagattcaggtactccttttcgcccttgtttttcttcttgtgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagtaacagattttatttctggaaaaactgactgagacgacggatcccacgacggaccgtcgagggggtctcgttccaaaacacttagaattctgaaatttgggtactgaaatcgactctctgaacttcgtgacggaatggcaggacggaccgtcacaggcgtgatgggccgtcacagacccttggtaaaaatctagtctctgaactctgtgacggacgtgcaggacggaccgtcacagactgcgtaatcccaggctgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="93147" stop="76804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92847" g_stop="92508" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92507" i_stop="77326" i_length="15182">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77325" g_stop="77147" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="518" r_length="178" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E252199" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92847" e_stop="92508"/>
          <exon e_start="77325" e_stop="77147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTAAAATTGGGTACTGAAAATTGACTCTTTGAACTTCGTAACGAAATGGCAGGACGGACCGTCACAGAGTCGTCAGTGGAAACCCAGTCTCTGAACCTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGGCCATCGCAGGTTACGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTACTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGGACAAAGAGAGAGAGAGGATTGATCGAGAGAGGAGAAACGAAGAGGAAAACACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTTATACTATTCGTAGTAAACTCTTAATAGCGAATGATATGTATGGGTAGTATTGTAAACCCTTCTATATGCTTAATTGTATGCTTGCATGAATGTGATTATGTAATCGTGATAAAATAAGCATGATGAAGCTATTGAATCCTAAATCTTGAAAAAGAAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACATTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATATGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTACCGTCATCTTCAACTCAACCGCAATTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTTTTATTTAATGAGTTCGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACAACACCAGTCCCTCATGGGCCTTGCCTGCTTGCCATAGGAACCCAATAATCCCTCCCAACACCTACCAACATGTTTGCTCTTGAGAATCGAACTCATGATCTTGACTCTGATACCATTTATTAGAATTAAGTGTTCATTCTCAAGTTATAAGTTATAACTGATAGCATATACACTATTTTATTTCATAACTAAATCGATCGAGCAAACATCATGATTATAACTCCAATCGAAGCCACACCAGCCCCTCGTGCGCCTTGTCATAAGATATTGGCATTATCCAACAAAATGTAAGAGAGTAAAACTAAAATAATATCAACTTTCCTTATTCTGAATTTGCATAGTTTAACACATCAATTTCATATTCTAAATAAAATTTATTTACTTTTAAGGTTGAATGAATGACCTTCAATGAAGCAATATTTATTTTATCATTTAAACATATATTTTTGAATATTAATTATTATTTTCAATAAATTTAAATATTTATCACTTGACATGATACGTACGCTGATCTAGTGAAAATAAAATTATTAATATTAAAGACTAATAAGGTTAATAATTTCAAAAAGAAAAAAGTTCTCAATATTTTCTCTTTTCCTTTATTGGTATTAATTTTCTAGATAACCAGTTCGGTTGAAAATTCATAAGTGAATTTTTTCATAAATCTAAGGCGAAAAGAAATATTGACTATAACCTTAATGAAAATAAATTACTCCCCTCCATCCATCTTTAATTGTCATGATTTCTAATTTTACAGTTAAACTATTAGAATTTTGACTAACATTTTAAGATGTATTTTTTTTATGATGATGATATGCAAAAACAATGCAATTTATATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTTTTGTTTAGAATATCAAATTAATATATTTTAATTTTAACTTTGAAAATTAGTCAAATTAACTTTAATAAAACGCAACATGACAAATAAAAGTGGACAGAGGAAACAATACTTAATATTTTTTTTAAAAAAATATATTAGATCTATAAGTTTTCACACGTGGAGATTTAATTTTCTTATATGGTCACTCAACTATCATCTATTTTCTCAGAAAGTCACTTAACTTTGTATTTTACCTCAAAAGTCACTCAACTATCAATTCTTCGATCAAAAAGTCACTCAGCTTTGAATTTTAATTCAAAAATCACTCAACTATTAATTGTTTTCTCACAAAGTCACTCAACCTATTTAATTGATATTTTAATTTAAATTTTCTAATTTAATTCTTTTTATTTAAAATCCAAAATTTTAAAAAATTAAAAAATATCATTTAAATCATTTAATGACCCGCCCGTTAAAAATATACTATTGACCCATTTTATTTACTTTCTGAGAGAACAATTAATAATTAAGTGACTTTTGAGTTAAAATTCATTGAGTGACTTTTTGAGAGAAAAATTGATAGTTGAGTGACTTTTGCGATAAAATACAAAGTTAAGTGACTTTCTAAGAGAATAAATGATAGTTGAATGACCATATAAGATATTAACTCCAAGTTCCAACCAAATGGCTATGAATATTCAAATACAGAAAAAAGTACTTTTAGAATTTTTTTTATTACTGTTTTTTCCTATGTATGTTATGTACTATTGATATATACATTATTTCGTTATTATTACTTGTTCTTGTATTTCCTTTGTCAAATTGTTGGAAAATTAAACATTATATTTTAAGATGAAGAGACGAGATATGATACATTTTGTATACACTTTGTTCTTTATTTAATTTTGAGTTGTAATTATAAAATTATATTGAATATGTTATTATTGACGAAAAAAAACTGGAAAAAGTTACCAGAGAAATAAGCACCGAAAACACAATAAATTCAAATACTTAATTTCGTCATAGTTCACATTTTTCATACTTCTCTATCGCAATTCTTGTGAGGGAATTTAAGTACAAGATTAAAGCACTTAATTTTCACTTTGACTTTATATACAAATTTTGTAGTATTTGATCGAAATTATTAATTAGATGACTTATGAGTTTCTTTTTAAAGCAACAATTTACAATTATCACTATACATATTACTGATCGTCAAAAATCCTTACAAATGAACAAATTTCCCTGTTTTCACAATCTTGATTAATACAAAAAAAAAAAAAACATAGTATGTATTTATACATTATACAAATATACATGGTTTATATAAAGACAAATAATGGGTTAATTGATTAATGAACACCTTTTATGTGTAGGTTTTAACCTAATAACTATTTTCTATCGACTTTTAAAAAATTAAAAATAAATTCTATATAAAAAAAAATACTATAAGTCAACATAATGAATAATTTAATTATTTTCTTTTTGGAAAAATCATAGTCAAATTAAAGATTTGACAAATATAAGAAAGAAAATATCTTTCTTATTTTTTCTTTATAGAGAGGTTGGGATATTAAATGCATCATTGCTGCAAAATATCTACATAAAATTTATGGATCAAGTCTATGGATAGTACATATTCTTTGATATGCATATGAGTAAAACTTAAGGTGTCCCCACATGAACTCGGAATTTGAAGATTTCGAATATATTATATTATTATTATCTCAATTTAAATATGAACTCTAAAATAAATTTAAAATAAAAACAATGAAATTATAGTGTAGTTGGATTCAAATCCAGGTCTTGCGGGTGATTCCTTTAGCTTGTAGCAGCAATACAGTGGACACAAATGTTCATCATTGGTATATTGATAATTATATTATAATTTATGTCAGTTTCTCAAGATAGATATACATCTATATACACATAATTTTTTTCAAAATTGACAATTATACATGTACCACGCCTGTTTGGGTGGGTCCGCTTATGAACAGCAAGATTAAAAAATTGGTGAAGGATGTAGAATTTTCTTTTAAACATACATAAAATTTAATATATGATCATAATAATTAATAGGGAAAATGTACAAATATCCTCTTAGATTATGACCAAAATTTTAAAGACACACTTAACTAAATTAAGTTCTTATTACTCGTTGAACCTTTTTTTTTGTAATTTTGTGCACCTTTTGGCTTACGTGAATCTAAATATCTCCGATGCACCTTAATTATGTAGAGTCATGAAGTATGTCACATAAGATAAAAGGTGTATAAAAAAATTTTAAAATAAATTCGGAAAAATAATATGAACTTAGTTTAGTACCTTAATTAACCCTAATTTATGTTTAAACTTTATATAGCACTTAGCGGTTTTGACAAAGTTTATTGGAAAGCATAAACATATACATGTCAAATGAATATGTCTACGAGATTGAACGAAAATATGAAAGAGTATAGATAATGAAAGTTACATTACTCTGACTATTTATAGCATAATCTTTTTTCTTTTTAATTAGAAACAAGTTACTTTGGAATTGATTATTTTTAACATAATAAGTTATTATTATATATATATATATGATAAAGAAAAAATAATGTAAGATCTCCAACGTACTAAACATAAAATAAAATAAAATATAAAATTGTATTTTATTTTGAAATTATTAAAGAAAAAATTAGTGTTAACTAATCATATACTAGTTAATTAGTCATCATAGCTAAAGTTTTAGTTGATTATAATTTGCGACCAACATTCAGTGAAAATTGTGTAAACTGGGGTTTTGAGTTTGTATAGTCCGCATGTTTTTATAAATCAAGATTTGTATAAGTGTTTAAAGTTCAGATGTTTGTGTTCGTATAACTTCGTTATTTCAAGTTTATATAAAAAAAATATAGCTCACTTTTACAAATGTACTATAAGTCTATAATCCACAAGTATGCAAACTATAGCTACAGAGAACAATTAAGTTTATTACAGTAACTATTTACAAAAATTCATCGATATTAAATTTTATAGGTCACATCACACAACTAATTCCTAGCATAATGAGAAAAGGACTAGAGATTGAAGTAGTCTACGCAAAAACTTTTCAACTTTTTTATATCTTGTTTAGATTTCCTATTTTATAAATAATCAACAATATTGTTAGTCTATTTCTATTGTTAAAAAGGGATAAACAATTTGTAATTTGAATTTCTTATCTTATGTTACTCGATTGTCATCTATTTTGATTTAATTATTCGATTATTTTAAAATAAGAAAAGGACAACAATTCATTCAAAAGGAAATAAATTCTCTTAGTATGGTTTTGAATTTTATAATTTCTTATATCTAAACTCAGATATGTTTAACTTCTTGCTTATATTATTGCCTAATTTAATATACTAAACATCATAACTTACTAAATAATGCATAAGTTATCGATCTTGTTGCACAAATAAAATATGCTATTATTATATCTTATATGCATAAAAACAATATATTATGTATATATAACTATAAAAAAAAAGTATGTTTATAATTTATCTGTTTGATTATTTCTTTGATTACATGGAACAAAATTAAAATCAAAATCAAATCAATTATTATTGACTTTTAACAATGTAAAACGAAACCAAATAAACAAATATTTGGTTTGGATCGTTTTTTTACCAAAATCGTGAACACTTTTATCTTATGCCAATGAAATTTTACTTAGTGAGATATAAGAGAATAGAGTGTGCACTGATTTATCATTATCTCGTAGAGGTAGAGAGAGTAATTTCAAAAGAAATTCAAAACAAATAGAGGGGAAAAAACCAATAAAAAAAATGTATATAATTTAACTATCGAAAATTAAATATTAATAACAAATTAAAGTGAGAGAGCAATAGTTCTTACATCAATTTTTTTTAATGAATTTAAATATTAACTTTAGGAGATGTAAACTATTTCAAAATTAATTCAACACAAAAATAATGATCTTTAAACTATATTTTTATATTAAGAAATTATTTTTCTTATATTTATATTTTTTTCTTAATAGACGGAAATAAACTACTAAAAATATGCTTATTTTAGAATGAAAAAAATAATATTAATTAATTAGATGACGGTACGAAAAATCAAATTTGTGTATTTGTATATCTGTGGACTGTGGACTGTGTTAGTTGATTTTTCAACATTATTAAATGGATAACAACAAATAGTAATTGTTTACAATAAATTTGGATGGTCAAAATTTATTTTGAATTTTTACTCTTTCAAAAATATTTTTTCGTAGAAAAAACAAATTTAATGTGATGCATTATGTTTAAACTGATATCATTGCCAATGGCCAATATGATGCATTATGTGAAATTAGCTATCGATTTCCTTGCTAATCATTCTTTTAATTATTCGTAAATCGTAACTAACAAAATCTTTTGAAAATCCATTGCTAAAGCAAAGGGTTTGCCTTCTGGTCAACTCTTCGGGGATATCTAGTGGTTTGGACTTAAGATTTTCAAGTTGGAGGATTCAAAGTTCGAAACCCCTTACAAGCGAAAGTAAGGGGTTTGCCTTCTGGATTGAGTTCGTCACACTAGACTTGCCTAGTGCGACTTATCTCTCCTGTAGGATATGCAAGTTCTTCCATAGAAATGGGGATTTTACCTGAGTGCACCCAAAGGTAGTGTCTGCAGGTTTCTCTGGTCATCAAAAACTACATAATTTGCTCTTGGAGTTTGACAAGAAATATCGATTTCCTTGCCAATCCATCTTTTAATTATTCGTAGCTAACAATAATCTTATGATAATCCATCTCTAAAGTAAGGGGTTCGCCTTATGGTCAACCCTTCGCAGGGGTGGAAACAACATATACTTAGGGGTCATGCGAACCCTTTCAGCAGAAAATATTACAATTTATGCATGGTAAAATTATTTTTTTAGATATGTAAAATAGATGTGGAATCCCTTTCCACTAGTTTGTGTGTTTAACTTCTCAGATTTTGAACCCCTTACTAAAAATTCTGACTCCGCCATTGTCCCTTCACCTAGTGGTTTGAACTTGGAATTTTCATGTTGGAGGTCTGAAAGTTCGAAACCCCTTGTCAGCCAAAGTAAGGGGTTTGCCTTCTGGATCAAATTCGTGCAAGTTATTCCATAGAAATTAGGTTTAAACTTGGAGTTTAAAATAGTATACTATATGATGCATTATGTTTAAACTTATAGCATTGCCAATGACCAATATGATGCATTATGTGAAATTAGCTATTGATTTTCTTGCTAATCTATCTTTGAATTATACCTAACTAACAATATCTTTTAATAATCCATCGCTAAAGAAAGGTGTTTGCCTTCTGGTCAATCCTTCGGAGGAGCGGAGGCAGCATATAGGGGTTCATCCGAACCCCCTTCCACTAGTTCGTGTATTTACTTCTTAGATTTTGAATCCCTTATTAAAAATTCTGGCTCTACTCCTGATTTTCAGGGTCCCTAGTGGTTTGAACTTGAGATTTTCACGATGGAGAGCTCAAAGTTCGAAACCTCTTGCCAGCGAAAACAAGGAATTTGCCTTCTGAGTCGAGTTCCTAGTACGAGTTACCTCTCTGGTATGGCATGGAAGTTATTCCATAGAAATGGGGGTTTTACCCTGTGAACAGATATTGGAATGTGAACGGAGCCTCTTGTACGCGGGAGAGGGATTTTAACATGACAGTTCCTAATAATAAAGAGGTTTACAGCAATGTAAAATGTAATCGTTCATTCAATAATGGCTGAGTTTGCCATGTCGTAGTAATGTAAGCTCTTGCTTTTGATCTTTGTAACTTCACATTTTACTCTTAAATCAGAAAGTGCATCATGTAATGAGAAATTCGTATGCTTTTTTTGTTGTTGTTGATACAGCCAATTGAAGCGTCTTAGTATGACAGGAATTCTGCCTCCAGAATTTGCAAATCTTACTCATCTGCAAGAATTGTGAGTATCGTTTTGGGCTTGGAACTTCCATGTCAGAGGTCTTAAGTTCAAGTGAAAGCAAGGGTTTTGCCTTCTGTCTGTGTGCACAATGGGGTTTTTACCTGTGGCTTTATCAATTTTTTTCTTTTCCAGAGATCTGGCTCGTAATTACTTAAGTGGATCGATTCCCTCAAGCTATGGCCAGCTTCGTAAATTTAATTATCATCTCATATTGAACTTGACAATTAAACTTTGTGAAGTTGCATGAAAATCTCTATTTAAAAAGTAAGTAAAGAGTAGATAACGTCCAATTTTTGTTTGAATTAATATTATCAACTAATCTCATATTTATATTCTCTAGTATATTTTTGGTATAAGCAACAATTAGCAATCTACAGTATGATTGAAGTTTCAGAGACACTATAACTAAATTAATGTCTTACTATCTCGAATTTCCTTTTTTTGGTAATTTTATACATTTTTTTGGCTTATATGACATTCAAATATCTTTCACGTGCCTCAACTACGGTGAGTCAATGGAGTGTATCACGTAAGCCAAAAGGTTTATAAGTTTTAAAAAAATGAGTTTATTACAACCTTAGTTTTGTTAATGCGTGTCTCCAAGATTTCGGTTATAGTCTAAGGGTACTTGTGTCTTATCCCTATATTTTTCATAATTAATACTCCATCTATTTCTATTTACTTGTTCATTTTTGGCTTGACACGCCTATTAAAAAAATAATTGACATATCATTTTTCCCCTATTAATTAATAGAATTCCAAAATTAATTTACTCATTAAGAGATTCTACGTTTATTTTTTCAAAAATATTAACTCTCTAAATAAGTTGAGGGTATAATAAATAAAGAAAATAATTTTTTTTCTTGATTCATAAAAATGACGAATAAAAAAGGATGGAGGGATTTTATAGGTTTTTACCCCCCCCCCCCCCCGCCCAATTAATTGATAAAATCCCAAAATTAATTTACTCATTAAAGAGATTCTATCTTTATTTTTTCAAAAAGATTAACGCTCTAAATAAATTGAGAACATAATAAATAAAAAAAAAAAAATTCTTTATTCATAAGTATGACCAATAAAAAAGAACGAAGGAAATTTATAGATTTTTTGAATTTTGGAAAATTGATGAAAGTATATGAACTATGAAGCCGATTTGAATAGAAATAAAGACTAAAGTAAGAGTTGAAAATTACGCAAGATTTTTTGTGTTAATTCATTCTTAACGTCAAAGAAAACTTTGATTTGTATTAGCATATTGTCAATTAAGAATTAATAAAACATTATAGTAAATTATCACATGATAAAGTAGTTGACCATGCAAAAAAGAGTCGTTGGCCAAAATTACTGTTGTACAGAAAAGTTTCATGGGATAAAGTGTACTGACCTTTCATACACGTTCATTGAATTTTCAATTATATTCTATATAATATAATAATAATAATGAAAAGGAAAATAGAACATTATTTTATCGATTACTTTTTACCTTTCTATTTGGGAAAATACCTTAGTACCTCCTCAACCTATGTCCGAAATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAGCTTATTTTATATGTAATTTTCTACCCTTTTTTAGCCTACGTGACACTAGTTCGAAAAAAAAAGTCAGTCATCGTTGGGCCCACAAGATAGTGCCACGTAAGCTAAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGTAATAAGACCTTAGTATAGTATAAGTGTATCTCTGAGATTTCGAACATAGGTTGAGGGGATACTTGGGCATTATCCCTTTCTATTTTAATAATCGGTCTTTATATAATAAGAGAAAAAAAGTAAACTTGATGAACTACATCTTTATTTTATTAAGTATTTCTTTAAAAAAAATGGTATGAAAAATATTTTAATTTTAATCGAAATTATTGTTAGATGTCAAATTTTATAGAGGATCTTTTACCCCGTCACTAATTAATACTCCATCTGTTTCATAAAGAATGATCTAGTTTAACTTGACACGAATTCAAAAAAATAAAGAAGACTTTTGATCATGTGATCGTAAATTAAAGTTATGTCAAATATACAAAATTATTCTTTAATCTTGTGGCCTTAAAAAATATTTCAACGTGGAAAGTTGTTACCAAAAAAAGAAAGAGGTCGTTCTTTTAAACAGACTAAAAAAGAAAGGAGGTCATTCTTTTTTAAACGAAAGAAATAGTATATTTTGAAGGTATATATATGTTGTGTGGACACATTATTATTTATAATTATGCAATATTTATTATGTCTACGTGGACACATATATACTTTTAAAATACATTATTAAATAATGTAAAGAGTAAAATATCCTTTTTAAAATTTGATATTGTTATAATAACTTCGATCAAAATTTAAATATACTTAAAACTTCCTTCTTTTTTTTCATTTCCTTACCAAATTGGCTCTTTGAAGTTAGATTTGAGCATGAATTGGACAAATAATAAATGTTATAAGTAGATATTAGAACTCAATAATTTTCATAATGTACATTGGAATGACAATGATATGTTGGGACTTTGTCGCATTGGTATTTTTTTCTGTCTTTTTATTAAAAGAGATTTATATAGAAAAAGACTAATCAAAGTTGACATTCTATAGATTAATTTAAATGTTATCAACTCTCTAGGTTTTAATTATTTATTTTCTGTTTATTTAAAAAAAATATTTTTTTTAACATTTTAATTTTTCACTTGCATGTTTCATATCATAAGATTAAAAAATATTTTACTATATTATGCATATCTAAAGTTTAAGGCCACGTTACTTTCTCAACTCAATATCAAGTTAAAAACGGATAAACAAACTGCAAAGAGGTGTGATAACTTCAACACCAACATTAAATTCAATATAATTTCATAAGTCGAATGTATAAAAAATATAATATGCAAAACTTACCCTTATTTTTGTGATAATAGATAAATTATAATTGCAGACTCGCAGCTCAATTTTTTTTAAAAAGCAATTGAAGTAGTTTTACTTTAATCATAATTTTCTAAAATATCCTGAATTATTAATATCTAAGGCATTAATTTTGATAATTCCTTTGCCAACTGTTTTATTGTAGGTGACAGGTTGTGACTTGTTAGGCTGATGGCTCTACTAGCTGCACAATATTCTGCACATTTTTGGAGTATCATTCAACAAGTGTTTCTTTCTTACCCATTGCGTTTTTGCTGGTAAAAATATTGCACCTTTAATCATAATTTTAGAATTTGAATCGTGAACATGAAAAAGATTTTTTTGAGAGTGTCATTTTCAAATTATAAATCTTACGGTGTACAATCTGAAATTAGTCAGAGCTCTAATGTGGAGTTCGGCATCAGATAAAAAATAGTAAAAGAAAGTGTTTCTTCATCTTTATAGTTGTATGATAAATTGATAATGTTTAATTAGCATTCTTATTTGTCTACTATTTTTAAAAATTAATTTTATTTCTATTTATTATTTTAAGAAAAAATAATTATTTTTTCTTACTTTTAGCATTAGTTTTTTATTTTCAAAGAAGAAAAAAAGAGGTTACATGCATGAGTTTGTTTATCCAATTATTAGTCTTAAAATAATAATAATACTTGTGTAGGCTCCTCCTATACTATATGCTTTCTAGCTGAATGTTTTTGACTGTCTTTCTTCATCTGCATGCATGTATGGGTGCAATTATTATTATTTTTCTTCCAATTAATTATGTCTAGACATGTAGGCTTTTAATATCTCATTAAATTACAACTTAAATTTAAAAAAAAATAAAAAAAAGTTAACTGTTTTCACACATGGAGATTGAATTTTCTTCCTTCCCTCCAAAGTCCAAACCAAATATTCACATAGAGAAAAAAAAAAGTTTTCTTTGTTATTTATGTTCTTTCCTTTAAATTTGTGTGTTATGTACTATTGATCGATCTCGAATTATTTTGTTATTGTTATTGTCACTTTCTTATATTTTATTTTTCAAATAATTTAAATATTAAATATTTTATTTTTAGATAAAGAGACAAAATATGATATGATTTATGTATACTCTGCTCTAAAGCCGTCAATATAGGTTAGGTCTGTTGGGTCTGCCTTGGCCTAACTCGGAATTTAATAGGATTAGACTACAATTTTTGGAGCCCATTTGAGAGAAGAGCTTTTTAGCCCGGCTCAAATAAGCTTGCTGATTTGTGGAACTTGGGAAATATCGATAGGGCCAGCTTTTGGGCTAATAAAAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTTCAAATTCAAAAAAGTTATGTTAATATTTCTATCTAGGTGTTTATACTTTATTTTTTAAAAAAAACTTAATAAATATTATAAAGATAATTTATTTGTGGATTTGATTAAAAACTAGTAACATTAACATCATGTAATATTATTTTATCGATATTTATGATAATATTTTTAAATTATAATTTATAATTTAATTTTAATAATTCTAAAAATAATATAATTTTAAAAAAATTGAGCTGGTCCGACAAGCCTGTAGCCCACGTACTTGTGGGTTGGGCCGACCGTTTTCTAGCTCACACCAAAAATGGGCTAACTCGATCTGACCTGTAATATGTCGAAGCCTGTATGGATTAGCTCGAATGGGTGAACTAGCCCATATTGATAGCTCTACTCTTTTTAAATTGTACTTGTGAAATTATATTGAATATGTTATTATTATTGAATGAGAAGAAGGAAAAAGTTAAAAGAGAAATAAGAACCAAAAACATGATAAATTCAAATACTTGCATATATAAATTATTCATAGACTCATAATTCATACCTCATAATTGTCTATTACAGATCTTGTGGAGGAAATTGAATTACAAGATTAAAACACTTAATTTTCACTATAGATTTATGTATAAATTTTGTAGTATTTAATCGAAAATATTAATTAAACGATTTATTACAAGCTTTTTGTTGAGAGAAACGGATGATGCACATTTCAGTATTTATATACATTATTATATATATAATTATACAAGATTTATATATAGTATACTTTTTTATGAATGGATCTTATCTGTTTATTTTCAACCGATTGTACTATTTATATATTTATGGACCCAACCTTATAACTATTTTCAACTAACTTATAAAAATATTAGAAAAAAATTTATGTATTTAAAAATTACATGAGAATTAATAATAAGTCAACTAATCATTTTAAAAATTTTCCTCTTCTAGAGAGATTTGAATATTGGATATCAAGTCTTTGGATATTACATATATTATTTAATATGCATCAAATTGAAGGTGCCCCCTACCCTACCCTATCAACACAATTTCTTTTACTAATATCTTGTTTTTGAGGGAGAAAAAGTTTGTTTCCAAAATGTACAAAAAGTGAATAGAAAACTAAAATCAAGAGGAAAATATTAAACTACATAAACCAACGACTCCATGCAGACCTTGATCTATTTGGTTGTCTTTAATTGAAAAAATGTGATGATTAGACTTTTAAAGGTTTTTTTGGTCGATCGTATTAGAAGAAATATTTTGTGTTATGTGTAATTTTTTTAATATTATGTTTGATAGAAATTTGGGGAAGGGAATCCACAGGAAGAAACAGAAGCATAAGTGTATGTATAACTAATTCATGAATTTATAAGATATATTATTAATAGGCTTAAGTTATCTGCAGCCCCTTAAAATTGTCCGCAAAATTCGCTTAGACATCTTAACATGTTCATTTTTCTATTAGACACTCAAACCTTAAAAAATAAGTACATATCAAACATTTTTTAAAGACCTGGTCAAAAGAGAAAGTGTGTGTAATGCATATGCAACTGATGTGACAAAATAACAAATCAAATGAAGACATGTGACATTTAAATTTAAAATAATTCTATAAATGAATTTTGAAAATAAAAGAATCTAAATAAATTTTAAAAAAAAGAATTTCAATTTTTTTTTAAAAAAAAGAAAAATTCATGTTACCACCCTCACACCCATCTGCACCCTCACCACCTCAAATCTTTCCTTTTCTTCTCTCACTAAAATCACCTCTTGTCCATCGTTGTTATTTTCCAAATGGAAATTTAAATATATACTAAGTATGAATTTATCTTCTTTTGTTTTCTTTAGTTCTCTTCATGTTTTTTTTTTGTTCCTATTTCAAAATTGGTAGTATATTTTTTCTTATAAAAAAGAATATGTTCAGTGTCTTTTTGTTTTGATTTAAATTTACTTTATGTTCTTGTTTTGTAATGAAGAAAGAAGGGGTGTGAACCTGAAGCTGTGTGTGTGAACTCTATATTTTCCGGGGGCCTCCATATTTTTCGGCAAAATAAAAATGGTGATGTCCATTATTTTCGGCAAGAAAACTTAGATTATATTCTTTCATTTTTTATAACAAAGGAAATAAATACTTACATTTCTTATTAAATTTAAGCATAAGTGTAACGACTTGTTAGTCGTTTTGAGCAGCAAATTTTATTTTTGGAAAAACTGGCTGAGACGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTTGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</genome_strand>
        <mrna_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCCATTTTAGATAGAGAAGTCCGCAAATTGAGGTCAAGGGAGATTGCATCTATCAAAGTTCAATGGAAGAATCGACCAGTTGAAGAATCCACTTGGGAGAAGGAAGTTGATATGCGAGAAAGATACCCATACCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTTCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGTAACAGATTTTATTTCTGGAAAAACTGACTGAGACGACGGATCCCACGACGGACCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGACCCTTGGTAAAAATCTAGTCTCTGAACTCTGTGACGGACG-TGCAGGACGGACCGTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="91618" stop="90783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91318" g_stop="91083" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91318" e_stop="91083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109753" stop="90874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91809" g_stop="91594" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91593" i_stop="91480" i_length="114">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91479" g_stop="91174" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="515" r_length="305" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91809" e_stop="91594"/>
          <exon e_start="91479" e_stop="91174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACATTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATA-TGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAG..................................................................................................................GATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATG-AATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="92951" stop="93728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93251" g_stop="93427" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93251" e_stop="93427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="104993" stop="106304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105293" g_stop="106004" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105293" e_stop="106004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="104993" stop="106188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105293" g_stop="105888" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105293" e_stop="105888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="104993" stop="106118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105293" g_stop="105818" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105293" e_stop="105818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105064" stop="106341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105364" g_stop="106042" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105364" e_stop="106042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105064" stop="106022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105364" g_stop="105722" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105364" e_stop="105722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105513" stop="106770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105813" g_stop="106470" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105813" e_stop="106470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="107606" stop="105601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107306" g_stop="107133" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107132" i_stop="106392" i_length="741">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106391" g_stop="105865" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107306" e_stop="107133"/>
          <exon e_start="106391" e_stop="105865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACTATGGCATCGATGTCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTTCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCTACAGACTGTAGTTGGGGGTCCGCCTCAGACCGTCAACACTTCTCTGAGGGACCTATGCTTGAATCCAGAGGGTGTTATGGATGTGGGGAAACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGCTGTCATTCTGGTGGACGCGGTGGTCGAAGTAATGGTGGTCACTAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGCCAACGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGTTCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTTTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTATGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTC-TTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGA-TTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105582" stop="106942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105882" g_stop="106642" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105882" e_stop="106642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGA-ACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105582" stop="106841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105882" g_stop="106541" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105882" e_stop="106541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105984" stop="106910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106284" g_stop="106614" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106284" e_stop="106614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="106909" stop="108229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107209" g_stop="107929" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107209" e_stop="107929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAA-TCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="106913" stop="108176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107213" g_stop="107876" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107213" e_stop="107876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCA-ATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCA-TTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="107268" stop="108301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107568" g_stop="108000" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107568" e_stop="108000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109021" stop="107707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108721" g_stop="108007" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108721" e_stop="108007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTACCGTCATCTTCAACTCAACCGCAATTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTT-TTA-CTTGTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGT-TTTATTTAATGAGTTTGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTCTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATTTGACCATCTTCACTCTCTTTCACAGATGGTTAGAAATAGAGCAACAACTACGCCAACACCAACACCAGCACCTGCGGGACAGGGTGCGTCTGAGCCAACCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTA-AGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGG-TTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAATTCCA----TTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396058" ref_strand="+" ref_description="SGN-E396058 [TUS-18-N22]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtgtttccaaaaataaaatctgctactcacaacgactaaacaggtcgttacatttaggttcttcatagttaactattattattattttacgatttataacactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109407" stop="110555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109698" g_stop="110256" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E396058" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109698" e_stop="110256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTTGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGATGCTCAAAACGACTAAACAGGTCGTTACAG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTGTTTCCAAAAATAAAATCTGCTACTCACAACGACTAAACAGGTCGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396054" ref_strand="+" ref_description="SGN-E396054 [TUS-18-N18]">
      <seq>atcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacatttatgttcttcctacttaaatattattattattttacgatttataacactattagaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109407" stop="110561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109698" g_stop="110256" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E396054" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109698" e_stop="110256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTTGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGATGCTCAAAACGACTAAACAGGTCGTTACAG</genome_strand>
        <mrna_strand>ATCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231589" ref_strand="+" ref_description="SGN-E231589 [cLED-4-L18]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcatagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaacaggtcgttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109407" stop="110555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109699" g_stop="110256" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E231589" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109699" e_stop="110256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTTGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGATGCTCAAAACGACTAAACAGGTCGTTACAG</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCATAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACAGGTCGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241959" ref_strand="+" ref_description="SGN-E241959 [cLED-27-I11]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatgacggtccgtcgtgggttccgtcgtctcaacctgtttttccaaaaataaaatctgctactcaaaacgactaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109407" stop="110545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109699" g_stop="110245" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E241959" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109699" e_stop="110245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTTGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGATGCTCAAAACGACTAAACA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAACCTGTTTTTCCAAAAATAAAATCTGCTACTCAAAACGACTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109407" stop="110472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109699" g_stop="110172" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109699" e_stop="110172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTT-TCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGG-AATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>73</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="393" PGL_stop="3845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="393" e_stop="527"/>
            <exon e_start="1578" e_stop="1979"/>
            <exon e_start="3289" e_stop="3845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.991" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="393" e_stop="527" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="528" i_stop="1577" i_length="1050"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="1578" e_stop="1979" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.991">
            <gDNA_intron_boundary i_start="1980" i_stop="3288" i_length="1309"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3289" e_stop="3845" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="393" stop="527"/>
              <exon start="1578" stop="1758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="394" stop="527"/>
              <exon start="1578" stop="1979"/>
              <exon start="3289" stop="3339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1734" stop="1979"/>
              <exon start="3289" stop="3845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3335" stop="3823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419159" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAAAGGAAGAGGGAGAAGAAGAAGAGAAAAGCTGCCAACAAGAGAGATCCGAGAAGACTTGGTGTTCAGGGGAAGAAGAAGAAGCAGAAATTTGACACTGCTGAAGAAAGAATCAAACAGAAGATTGAAAAT : GCAAAAGTCAAAGAAGCTATGCTAATTGAGAGACTAAAGAGATATGAGGTTACCAAAGTTCAAGGTCCCGAGGTTAAGCCACATTTTCTCACTGGTGAAGAACGATTCTATATTAAAAAGATGGCACAAAAAAAGTCTAATTATGTGCCTATTGGCAAAAGGGGAGTCTTTGGAGGTGTTATTCTTAATATGCATCTACATTGGAAAAGACATGAAACTGTCAAAGTCATATGCAAACCCTGCAAACCTGGTCAGATTCAAGAATATGTTGATGAAATTGCAAGACTGAGTGGTGGCATTCCGATTCAGATAATTGCAAATGATACCATCGTTTTTTACCGAGGAAGGGAATATGTGCAGCCTGAAATTATGTATCCTATTGATACACTGTCGAAGAAGAGG : GCGTTGGAAAAATCAAAATACGAGCAATCGCTAGAGTCTGTGAGACATTTCATTGCCATTGCTGAGAAGGAACTTGCACTCTACTATAGACATGTTGCCCTATATGATGAACCAAATATTCAGAGTGCTTACTCCATCCTTGATGATTCAACAAGTACAAGTGAAAAACGAAATGATGAAATAGGAGAGGAGAACTATTCAGCAGACGAATCTATTTCCTTGGATCTCGAGTTACCACAAGTTGATGATTATTGCTCGGATGATAAACAATCTTTAAGCGAATTTGGATTTGAGGATACTGATGAATCAAGTAGTGATGAGTTGGATTCTGGGGAGGAGGAAACTAGTAATTACTGCGGTAGCATATGGGGAAATTATTGAATGTTGAGACTTGAAATAATGTGGTTTTAATTCTTGATCTGATAAATTGAGGGATTGGAATAGAATAGAATTTTTTCAAATTCTAAATCTTCTGTTTGGTTATCCTGAAATTGGCACAAAAACTAGAACTTGATTTTTAATTTTTTAACCCAAGATAGATCATATTTCTTATGTCA</gDNA_template>
            <first_frame> L  Q  R  K  R  E  K  K  K  R  K  A  A  N  K  R  D  P  R  R  L  G  V  Q  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  M  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  A  Q  K  K  S  N  Y  V  P  I  G  K  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  R  H  E  T  V  K  V  I  C  K  P  C  K  P  G  Q  I  Q  E  Y  V  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  N  D  T  I  V  F  Y  R  G  R  E  Y  V  Q  P  E  I  M  Y  P  I  D  T  L  S  K  K  R  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  H  F  I  A  I  A  E  K  E  L  A  L  Y  Y  R  H  V  A  L  Y  D  E  P  N  I  Q  S  A  Y  S  I  L  D  D  S  T  S  T  S  E  K  R  N  D  E  I  G  E  E  N  Y  S  A  D  E  S  I  S  L  D  L  E  L  P  Q  V  D  D  Y  C  S  D  D  K  Q  S  L  S  E  F  G  F  E  D  T  D  E  S  S  S  D  E  L  D  S  G  E  E  E  T  S  N  Y  C  G  S  I  W  G  N  Y  *  M  L  R  L  E  I  M  W  F  *  F  L  I  *  *  I  E  G  L  E  *  N  R  I  F  S  N  S  K  S  S  V  W  L  S  *  N  W  H  K  N  *  N  L  I  F  N  F  L  T  Q  D  R  S  Y  F  L  C   </first_frame>
            <second_frame>  C  K  G  R  G  R  R  R  R  E  K  L  P  T  R  E  I  R  E  D  L  V  F  R  G  R  R  R  S  R  N  L  T  L  L  K  K  E  S  N  R  R  L  K  M :   Q  K  S  K  K  L  C  *  L  R  D  *  R  D  M  R  L  P  K  F  K  V  P  R  L  S  H  I  F  S  L  V  K  N  D  S  I  L  K  R  W  H  K  K  S  L  I  M  C  L  L  A  K  G  E  S  L  E  V  L  F  L  I  C  I  Y  I  G  K  D  M  K  L  S  K  S  Y  A  N  P  A  N  L  V  R  F  K  N  M  L  M  K  L  Q  D  *  V  V  A  F  R  F  R  *  L  Q  M  I  P  S  F  F  T  E  E  G  N  M  C  S  L  K  L  C  I  L  L  I  H  C  R  R  R  G :   R  W  K  N  Q  N  T  S  N  R  *  S  L  *  D  I  S  L  P  L  L  R  R  N  L  H  S  T  I  D  M  L  P  Y  M  M  N  Q  I  F  R  V  L  T  P  S  L  M  I  Q  Q  V  Q  V  K  N  E  M  M  K  *  E  R  R  T  I  Q  Q  T  N  L  F  P  W  I  S  S  Y  H  K  L  M  I  I  A  R  M  I  N  N  L  *  A  N  L  D  L  R  I  L  M  N  Q  V  V  M  S  W  I  L  G  R  R  K  L  V  I  T  A  V  A  Y  G  E  I  I  E  C  *  D  L  K  *  C  G  F  N  S  *  S  D  K  L  R  D  W  N  R  I  E  F  F  Q  I  L  N  L  L  F  G  Y  P  E  I  G  T  K  T  R  T  *  F  L  I  F  *  P  K  I  D  H  I  S  Y  V  </second_frame>
            <third_frame>   A  K  E  E  G  E  E  E  E  K  S  C  Q  Q  E  R  S  E  K  T  W  C  S  G  E  E  E  E  A  E  I  *  H  C  *  R  K  N  Q  T  E  D  *  K   : C  K  S  Q  R  S  Y  A  N  *  E  T  K  E  I  *  G  Y  Q  S  S  R  S  R  G  *  A  T  F  S  H  W  *  R  T  I  L  Y  *  K  D  G  T  K  K  V  *  L  C  A  Y  W  Q  K  G  S  L  W  R  C  Y  S  *  Y  A  S  T  L  E  K  T  *  N  C  Q  S  H  M  Q  T  L  Q  T  W  S  D  S  R  I  C  *  *  N  C  K  T  E  W  W  H  S  D  S  D  N  C  K  *  Y  H  R  F  L  P  R  K  G  I  C  A  A  *  N  Y  V  S  Y  *  Y  T  V  E  E  E   : G  V  G  K  I  K  I  R  A  I  A  R  V  C  E  T  F  H  C  H  C  *  E  G  T  C  T  L  L  *  T  C  C  P  I  *  *  T  K  Y  S  E  C  L  L  H  P  *  *  F  N  K  Y  K  *  K  T  K  *  *  N  R  R  G  E  L  F  S  R  R  I  Y  F  L  G  S  R  V  T  T  S  *  *  L  L  L  G  *  *  T  I  F  K  R  I  W  I  *  G  Y  *  *  I  K  *  *  *  V  G  F  W  G  G  G  N  *  *  L  L  R  *  H  M  G  K  L  L  N  V  E  T  *  N  N  V  V  L  I  L  D  L  I  N  *  G  I  G  I  E  *  N  F  F  K  F  *  I  F  C  L  V  I  L  K  L  A  Q  K  L  E  L  D  F  *  F  F  N  P  R  *  I  I  F  L  M  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="393" stop="527"/>
                    <exon start="1578" stop="1979"/>
                    <exon start="3289" stop="3669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQRKREKKKRKAANKRDPRRLGVQGKKKKQKFDTAEERIKQKIENAKVKEAMLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMAQKKSNYVPIGKRGVFGGVILNMHLHWKRHETVKVICKPCKPGQIQEYVDEIARLSGGIPIQIIANDTIVFYRGREYVQPEIMYPIDTLSKKRALEKSKYEQSLESVRHFIAIAEKELALYYRHVALYDEPNIQSAYSILDDSTSTSEKRNDEIGEENYSADESISLDLELPQVDDYCSDDKQSLSEFGFEDTDESSSDELDSGEEETSNYCGSIWGNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4347" PGL_stop="6918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4347" e_stop="4520"/>
            <exon e_start="5698" e_stop="5781"/>
            <exon e_start="6144" e_stop="6226"/>
            <exon e_start="6362" e_stop="6918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4347" e_stop="4520" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5698" e_stop="5781" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6144" e_stop="6226" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6362" e_stop="6918" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4347" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4349" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4349" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4356" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4356" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4369" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4372" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4373" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4374" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746567" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4388" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5715" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5755" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG : CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC : ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA : TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</gDNA_template>
            <first_frame> V  K  Q  *  *  G  D  I  F  Q  K  K  K  R  W  P  D  C  H  K  I  G  S  R  W  *  F  A  R  K  R  R  P  P  P  H  G  K  M  R  K  Q  S  T  P  P  V  E  P  V  P  K  S  K  P  S  E  K  :  L  L  L  G  Q  T  R  L  P  L  V  A  Q  R  *  T  R  E  S  W  M  K  I  L  R  I  C  H  :  I  K  R  Y  L  L  N  *  R  K  R  L  C  K  L  D  R  I  R  S  L  L  S  L  N  L  P  N :   *  *  T  K  N  H  R  S  F  K  S  M  N  L  E  R  Q  F  Q  T  N  R  *  F  L  N  W  R  E  L  L  V  R  N  F  V  E  R  N  K  L  Q  K  *  W  W  W  W  W  G  V  C  V  C  V  N  L  L  N  V  Y  I  V  W  V  L  S  V  V  M  Y  M  S  L  L  N  V  F  F  S  Q  *  G  G  S  C  V  W  I  R  D  V  T  F  V  V  K  T  E  C  F  S  C  R  K  W  M  C  L  L  L  L  D  V  *  G  L  Q  L  G  Q  F  S  K  F  D  Y  P  D  I  L  I  L  M  N  M  I  V  H  K  I  *  S  L  F  C  H  T  N  V  L  C  I  *  E  L  L  S  Y  *  F  R  L  K  D  E  N  W  L  M  T  L  K  *  I  S  Y  I  M  *  L  Y  F  F  L  </first_frame>
            <second_frame>  *  S  S  D  K  E  I  F  F  K  K  K  K  D  G  R  I  V  T  R  L  G  A  G  G  D  S  Q  E  S  A  D  R  R  R  T  E  R  *  E  S  S  Q  R  R  P  S  S  R  C  R  N  R  N  R  Q  K  S :   Y  C  W  V  K  Q  G  C  L  *  *  H  N  V  E  H  E  K  A  G  *  R  Y  *  E  S  V  T :   S  K  G  T  Y  *  T  E  E  S  D  Y  A  S  S  T  G  *  E  A  Y  S  V  S  T  C  P   : I  D  K  R  K  T  T  D  H  S  R  V  *  I  W  K  G  N  S  K  P  T  D  N  F  *  T  G  E  S  S  W  C  E  T  S  W  K  E  I  N  C  K  S  D  G  G  G  G  G  V  C  V  C  V  *  T  F  *  T  S  T  S  F  G  F  *  V  W  S  C  T  *  A  F  *  M  F  S  L  A  S  K  V  V  L  V  S  G  F  G  T  L  L  S  L  L  K  L  N  V  F  P  V  E  N  G  C  A  C  S  C  *  M  F  K  D  C  N  *  D  N  S  A  N  L  I  I  Q  T  S  *  S  *  *  T  *  L  F  T  R  Y  K  V  Y  F  A  I  P  T  S  F  A  F  R  N  C  *  V  T  N  S  D  *  K  M  R  I  G  *  *  P  *  N  R  S  V  T  L  C  N  C  I  S  F  C </second_frame>
            <third_frame>   K  A  V  I  R  R  Y  F  S  K  K  K  K  M  A  G  L  S  Q  D  W  E  P  V  V  I  R  K  K  A  P  T  A  A  A  R  K  D  E  K  A  V  N  A  A  R  R  A  G  A  E  I  E  T  V  R  K   : A  T  A  G  S  N  K  A  A  S  S  S  T  T  L  N  T  R  K  L  D  E  D  T  E  N  L  S   : H  Q  K  V  P  T  E  L  K  K  A  I  M  Q  A  R  Q  D  K  K  L  T  Q  S  Q  L  A  Q  :  L  I  N  E  K  P  Q  I  I  Q  E  Y  E  S  G  K  A  I  P  N  Q  Q  I  I  S  K  L  E  R  A  L  G  A  K  L  R  G  K  K  *  T  A  K  V  M  V  V  V  V  G  C  V  C  V  C  E  P  F  E  R  L  H  R  L  G  S  K  C  G  H  V  H  E  P  F  E  C  F  L  *  P  V  R  W  F  L  C  L  D  S  G  R  Y  F  R  C  *  N  *  M  F  F  L  S  K  M  D  V  L  A  L  A  R  C  L  R  I  A  I  R  T  I  Q  Q  I  *  L  S  R  H  L  N  L  N  E  H  D  C  S  Q  D  I  K  F  I  L  P  Y  Q  R  P  L  H  L  G  I  V  K  L  L  I  Q  I  K  R  *  E  L  V  N  D  L  K  I  D  Q  L  H  Y  V  I  V  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4349" stop="4520"/>
                    <exon start="5698" stop="5781"/>
                    <exon start="6144" stop="6226"/>
                    <exon start="6362" stop="6481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVIRRYFSKKKKMAGLSQDWEPVVIRKKAPTAAARKDEKAVNAARRAGAEIETVRKATAGSNKAASSSTTLNTRKLDEDTENLSHQKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLERALGAKLRGKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18117" PGL_stop="18771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18117" e_stop="18771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="18117" e_stop="18771" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18117" stop="18771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</gDNA_template>
            <first_frame> R  Y  *  S  G  S  C  L  F  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  F  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  I  D  Y  K  T  Y  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  F  C  L  Q  G  C  *  I  *  G  C  L  *  F  F  G  *  L  S  *  A  A  I  *  D  V  H  S  E  T  I  W  C  *  F  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  A  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  Q  G  V  G  Y  C  V  *  G  *  V  S  C  I  I  *  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  I  </first_frame>
            <second_frame>  D  I  N  Q  V  L  A  Y  F  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  S  G  V  Q  H  A  A  V  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  R  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  S  V  F  K  G  A  E  F  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  Y  K  M  C  I  V  K  R  F  G  V  D  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  Y  M  E  K  Y  M  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  V  S  V  T  A  Y  E  A  K  F  R  V  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  S </second_frame>
            <third_frame>   I  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  D  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  L  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  I  V  M  S  C  Y  I  R  C  A  *  *  N  D  L  V  L  I  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  S  L  A  C  I  W  R  S  I  C  P  G  L  *  G  I  G  G  E  M  S  S  *  A  S  S  K  A  G  C  R  L  L  R  M  R  L  S  F  V  Y  Y  L  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18118" stop="18771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINQVLAYFSGLSDQGQTPPVFSAPAPQVSGVQHAAVVAPRMDASLEIGTFPRLTTRPIMTSDQHELFSKFLKLKPSVFKGAEFEDAYDFLVDCHELLYKMCIVKRFGVDFVTYQFQGNAKMWWRSYVECQPAQAPPMTWASFSSLYMEKYMPRTLRDRRRDEFLSLEQGRVSVTAYEAKFRVLSRYATQLCFSPQERIRRFVKGLRSDLQIPALQVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19682" PGL_stop="19351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19682" e_stop="19351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="19682" e_stop="19351" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19682" stop="19351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</gDNA_template>
            <first_frame> N  L  S  Q  A  W  P  M  S  Q  F  W  H  Y  N  L  R  L  Q  S  L  E  K  A  K  S  Y  P  K  L  H  L  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  S  G  V  E  T  R  I  S  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  *  E  D  K  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  N   </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  C  H  S  F  G  I  T  I  *  D  C  K  V  W  R  K  P  S  H  T  Q  N  Y  I  *  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  A  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  I  R  K  I  N  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  T  </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  Q  R  S  R  N  T  N  K  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  L  G  R  *  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0188O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19381" PGL_stop="20042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19381" e_stop="20042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="19381" e_stop="20042" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19381" stop="20042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  L  S  S  *  F  A  T  G  L  N  L  H  C  E  L  L  D  M  L  I  R  V  S  T  P  L  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  R  C  N  F  G  Y  D  L  A  F  S  K  L  C  N  L  R  L  *  C  Q  N  C  D  I  G  Q  A  W  D  R  F  V  S  V  G  G  *  L  H  S  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  R  C  V  S  G  R  P  S  W  Y  T  T  R  *  R  Y  *  F  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  S  S  K  V  V  R  E  R  L  Y  *  T  K  C  I  L  L   </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  I  Y  L  P  N  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  L  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  L  L  V  W  E  G  D  Y  T  P  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  Q  D  V  F  P  A  D  L  P  G  I  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  V  Q  K  L  L  G  K  G  F  I  R  P  S  A  S  S  W  </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  F  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  A  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  *  M  *  F  W  V  *  L  G  F  L  Q  T  L  Q  S  *  I  V  M  P  K  L  *  H  W  P  S  L  G  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  K  M  C  F  R  Q  T  F  L  V  Y  H  Q  I  E  I  L  I  S  V  L  I  W  S  W  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  K  F  K  S  C  *  G  K  A  L  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19574" stop="20041"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLILDVILGMTWLSPNFAILDCNAKTVTLAKPGTDLLVWEGDYTPTPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFQDVFPADLPGIPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELKAQVQKLLGKGFIRPSASSW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="21930" PGL_stop="20899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21930" e_stop="20899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="21930" e_stop="20899" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21930" stop="21389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21485" stop="20899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21485" stop="20899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21485" stop="20932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  I  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  M  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  I  D  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  M  R  G  T  H  T  L  P  L  I  I  K  T  P  S  L  S  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  Q  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  V  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  W  A  R  L  P  I  L  P  A  F  L  L  K  A  S  S  T  T  L  A  F  P  E  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  I  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  R  H  A  M  F  S  K  I  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  E  L  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  P  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  *  T  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  K  Q  Q  N  Q  Q  C  H  V  S  S  Y  S  T  K  N  V  V  L  D  H  D  T  S  W  L  H  Q  G  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  C  G  V  H  I  P  F  P  *  L  S  K  H  L  P  Y  R  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  R  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  K  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  F  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  N  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  S  Q  P  T  P  N  R  G  S  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   G  M  Q  C  S  P  K  F  R  S  K  L  R  T  S  I  *  Y  N  G  K  W  N  S  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  R  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  Y  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  R  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  F  H  P  T  P  P  K  M  L  F  *  I  T  I  H  L  G  C  T  R  V  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  Y  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  S  Q  K  S  S  L  L  I  Y  F  *  P  R  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  S  P  C  L  S  T  *  S  I  F  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21465" stop="21226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSMRGTHTLPLIIKTPSLSIFASLASPRNTLSRIQISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLVKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21493" stop="21254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNYQNTFLIDFCFFSLSSQHLISDPDQFLIGKLLSFNLIKKGRSCLHTSQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21763" stop="21539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVNNYPNGVILTHCLWKTNHEVHCNSLPLPFRNRHSLKCPSRPLVFILYLLTIRALSNKINNVTFHPTPPKMLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="25019" PGL_stop="23776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25019" e_stop="23776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="25019" e_stop="23776" e_length="1244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25019" stop="24309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24443" stop="23806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="23776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24403" stop="23828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24353" stop="23801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACTTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGTGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGATGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTAGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAACTCGATCACAAACATGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  C  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  *  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  L  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  H  A  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q   </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  G  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  S  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  D  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  *  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  N  S  I  T  N  M  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  V  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  L  G  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  V  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  M  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  T  R  S  Q  T  C  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25017" stop="23776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKREVFGPIIRTPEGIKPVGYKWVFVRKRNEKGEVMRYKARLVAQGFSQRLGIDYMETYSPVVDAITFRYLINLAVHEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKVLLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMMVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKTRSQTCYLFTCGDTAISWRSM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="26875" PGL_stop="26330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26875" e_stop="26330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="26875" e_stop="26330" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="26330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26765" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATATTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  L  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  F  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  F  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  V  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  I  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  Y  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26874" stop="26332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCFLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPVFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="28171" PGL_stop="27409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28171" e_stop="27409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="28171" e_stop="27409" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28171" stop="27409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  Y  L  I  I  S  L  C  R  I  Y  P  N  L  S  L  C  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  K  L  *  F  S  F  V  I  I  L  M  R  A  *  K  L  N  I  *  R  *  K  I  H  L  S  C  G  L  T  *  R  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  P  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  S  M  P  Q  M  *  Y  Y  S  N  N  I  V  K  R  V  F  R  N  I  L  N  *  F  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  A  I  I  M  H  G  D  V  A  </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  I  S  *  F  H  Y  V  E  F  I  Q  T  *  V  C  A  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  S  Y  D  F  P  S  S  S  S  *  *  G  P  E  N  *  I  F  D  G  K  R  S  T  *  V  V  D  *  L  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  P  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  K  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  P  C  L  K  C  D  I  T  A  T  I  S  *  K  G  F  S  E  I  F  *  T  N  F  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  W  Q </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  L  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  P  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  D  P  L  E  L  W  T  D  L  K  G  R  Y  D  H  L  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28169" stop="27411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVISTKLLLAKVLYKYFYLIHILSHNFIMSNLSKLEFVPLDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIEYLTVKDPLELWTDLKGRYDHLKATVLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDMLEKTLTTFHASNVILQQQYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="37913" PGL_stop="33910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37913" e_stop="37740"/>
            <exon e_start="37201" e_stop="37069"/>
            <exon e_start="35481" e_stop="35183"/>
            <exon e_start="34150" e_stop="33910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37913" e_stop="37740" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37201" e_stop="37069" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.960">
            <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35481" e_stop="35183" e_length="299"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="34150" e_stop="33910" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37913" stop="37740"/>
              <exon start="37201" stop="37069"/>
              <exon start="35481" stop="35183"/>
              <exon start="34150" stop="34134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37912" stop="37740"/>
              <exon start="37201" stop="37069"/>
              <exon start="35481" stop="35290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37902" stop="37740"/>
              <exon start="37201" stop="37069"/>
              <exon start="35481" stop="35294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37831" stop="37740"/>
              <exon start="37201" stop="37069"/>
              <exon start="35481" stop="35183"/>
              <exon start="34150" stop="34038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37167" stop="37069"/>
              <exon start="35481" stop="35183"/>
              <exon start="34150" stop="33910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG : GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG : GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG : GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</gDNA_template>
            <first_frame> *  K  L  R  N  M  A  S  E  K  E  K  I  K  I  T  S  D  K  Y  R  L  F  L  H  E  D  Q  A  A  A  E  G  T  I  Q  W  R  H  G  D  A  P  S  Y  G  S  V  N  K  L  F  E  E  G  R  T  K  :  V  W  P  E  G  S  L  E  E  T  V  Q  N  A  I  K  S  W  E  M  E  L  S  H  K  T  R  V  K  D  F  R  T  I  N  P  Q  K  F  K  L  F  V  N   : G  R  D  G  L  S  A  E  E  T  L  K  V  G  S  Y  N  A  L  L  K  S  S  M  P  N  E  F  K  Y  Y  K  A  D  E  E  T  F  E  S  S  H  N  A  F  R  S  A  F  P  R  G  F  A  W  E  V  I  S  V  Y  T  G  P  P  I  I  T  Y  K  F  R  H  W  G  F  F  E  G  P  F  K  G  H  A  P  T  G  N  M  V  Q  F  Y  G  L  G  I  L  K  :  V  D  E  S  L  R  A  E  D  V  E  V  Y  Y  D  P  T  E  L  F  G  E  L  L  K  G  P  K  I  S  E  S  N  V  E  H  H  *  S  W  F  I  D  F  M  K  F  F  F  L  C  F  F  I  K  *  T  F  S  V  W  I  A  Q  Y  Y  N  T  M  L  Q  S  L  F  G  L  I  Y  L  K  </first_frame>
            <second_frame>  K  N  L  E  I  W  L  V  R  R  K  K  L  K  L  Q  V  I  S  I  G  Y  S  C  M  K  I  K  L  L  L  K  E  P  S  N  G  D  M  V  M  L  Q  V  M  E  V  L  I  N  S  L  K  K  E  G  L  R :   F  G  Q  K  D  L  L  K  K  Q  Y  K  M  L  *  N  H  G  K  W  N  F  H  I  R  L  E  *  K  T  L  G  Q  L  I  L  K  N  S  S  S  S  *  M  :  E  E  T  D  C  P  R  K  R  R  *  K  W  E  A  T  M  R  Y  *  R  V  Q  C  Q  M  N  S  N  I  T  K  Q  M  K  R  H  L  N  H  P  T  M  L  L  D  Q  L  F  Q  E  D  L  L  G  K  *  S  V  Y  T  Q  G  H  Q  L  L  H  T  N  S  D  I  G  V  S  L  K  V  H  L  K  D  M  P  L  L  A  T  W  S  N  S  M  A  L  V  Y  *  R :   L  M  N  H  *  E  Q  R  M  *  R  Y  I  M  I  Q  R  N  F  L  V  N  Y  S  K  D  Q  K  F  L  N  L  M  L  S  T  T  S  H  G  L  L  I  L  *  S  F  F  F  Y  V  F  S  *  N  K  L  S  L  F  G  S  H  N  I  T  I  Q  C  Y  K  V  C  L  D  *  F  I  *  S </second_frame>
            <third_frame>   K  T  *  K  Y  G  *  *  E  G  K  N  *  N  Y  K  *  *  V  *  A  I  L  A  *  R  S  S  C  C  *  R  N  H  P  M  E  T  W  *  C  S  K  L  W  K  C  *  *  T  L  *  R  R  K  D  *   : G  L  A  R  R  I  S  *  R  N  S  T  K  C  Y  K  I  M  G  N  G  T  F  T  *  D  *  S  K  R  L  *  D  N  *  S  S  K  I  Q  A  L  R  K  W :   K  R  R  I  V  R  G  R  D  V  E  S  G  K  L  Q  C  A  I  E  E  F  N  A  K  *  I  Q  I  L  Q  S  R  *  R  D  I  *  I  I  P  Q  C  F  *  I  S  F  S  K  R  I  C  L  G  S  D  Q  C  I  H  R  A  T  N  Y  Y  I  Q  I  Q  T  L  G  F  L  *  R  S  I  *  R  T  C  P  Y  W  Q  H  G  P  I  L  W  P  W  Y  I  E   : G  *  *  I  T  K  S  R  G  C  R  G  I  L  *  S  N  G  T  F  W  *  T  T  Q  R  T  K  N  F  *  I  *  C  *  A  P  L  V  M  V  Y  *  F  Y  E  V  F  F  F  M  F  F  H  K  I  N  F  L  C  L  D  R  T  I  L  Q  Y  N  V  T  K  F  V  W  I  D  L  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37910" stop="37740"/>
                    <exon start="37201" stop="37069"/>
                    <exon start="35481" stop="35183"/>
                    <exon start="34150" stop="34037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRNMASEKEKIKITSDKYRLFLHEDQAAAEGTIQWRHGDAPSYGSVNKLFEEGRTKVWPEGSLEETVQNAIKSWEMELSHKTRVKDFRTINPQKFKLFVNGRDGLSAEETLKVGSYNALLKSSMPNEFKYYKADEETFESSHNAFRSAFPRGFAWEVISVYTGPPIITYKFRHWGFFEGPFKGHAPTGNMVQFYGLGILKVDESLRAEDVEVYYDPTELFGELLKGPKISESNVEHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="50479" PGL_stop="44925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50479" e_stop="50136"/>
            <exon e_start="48236" e_stop="48102"/>
            <exon e_start="47996" e_stop="47923"/>
            <exon e_start="46932" e_stop="46893"/>
            <exon e_start="46617" e_stop="46572"/>
            <exon e_start="45681" e_stop="45602"/>
            <exon e_start="45338" e_stop="45157"/>
            <exon e_start="44993" e_stop="44925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.958"/>
          <exon-intron don_prob="0.976" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="50479" e_stop="50136" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48236" e_stop="48102" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.908">
            <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47996" e_stop="47923" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.104" acc_prob="0.941">
            <gDNA_intron_boundary i_start="47922" i_stop="46933" i_length="990"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46932" e_stop="46893" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46892" i_stop="46618" i_length="275"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46617" e_stop="46572" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46571" i_stop="45682" i_length="890"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45681" e_stop="45602" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.975">
            <gDNA_intron_boundary i_start="45601" i_stop="45339" i_length="263"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45338" e_stop="45157" e_length="182"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45156" i_stop="44994" i_length="163"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="44993" e_stop="44925" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50479" stop="50136"/>
              <exon start="48236" stop="48102"/>
              <exon start="47996" stop="47923"/>
              <exon start="46932" stop="46893"/>
              <exon start="46617" stop="46572"/>
              <exon start="45681" stop="45624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50471" stop="50136"/>
              <exon start="48236" stop="48102"/>
              <exon start="47996" stop="47975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50244" stop="50136"/>
              <exon start="48236" stop="48102"/>
              <exon start="47996" stop="47923"/>
              <exon start="46932" stop="46893"/>
              <exon start="46617" stop="46572"/>
              <exon start="45681" stop="45602"/>
              <exon start="45338" stop="45157"/>
              <exon start="44993" stop="44925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCCTCCCGCTCTTCTCTTCTCCCCCAAATTCTTCCCCAAAACTCTCAATTTTGAATTCAAAGTTGAACAATCGAAGAGAAATTTGTATACAAACAATGAGGGAAGAAGAAATTGAGAGGCTAAGAGGTGTTGTGAGGGATTGTGTGAGTAAACATTTGTATTCATCAGCTATCTTCTTTGCTGATAAAGTAGCTGCAATTACTTCTGACCCAGCCGATATATACATGCAAGCACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT : GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT : ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG : GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG : GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG : AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG : TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA : ATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</gDNA_template>
            <first_frame> I  A  S  R  S  S  L  L  P  Q  I  L  P  Q  N  S  Q  F  *  I  Q  S  *  T  I  E  E  K  F  V  Y  K  Q  *  G  K  K  K  L  R  G  *  E  V  L  *  G  I  V  *  V  N  I  C  I  H  Q  L  S  S  L  L  I  K  *  L  Q  L  L  L  T  Q  P  I  Y  T  C  K  H  K  L  C  I  L  V  D  T  I  A  V  L  F  T  F  L  M  L  L  K  S  S  F  V  T  S  A  S  D  T  S  P  P  S  A  L :   K  N  *  R  S  G  I  N  A  F  *  C  W  V  M  L  K  W  M  N  M  V  I  L  L  I  Q  E  S  S  T  A  C  T  W  T  R  M  V  K  I  V  K  *  I :   F  Y  Q  Q  S  A  F  *  G  A  R  H  M  K  R  W  R  I  V  H  R  L  D  Y   : G  I  K  L  L  S  R  L  I  L  C  V  M  R :   H  W  N  V  *  *  R  I  T  C  S  L  V  M  K  :  R  E  P  C  S  H  V  C  S  L  V  L  K  M  G  G  F  L  H  S  I  L  V  *  *  R  S :   M  I  K  K  M  W  W  K  L  N  L  E  S  W  N  R  V  D  L  I  Q  S  F  R  T  N  L  F  C  V  R  L  N  P  T  L  I  F  *  P  A  K  L  S  I  I  I  N  A  V  N  I  R  N  A  L  N  *  H  L   : N  C  L  K  R  I  R  S  T  S  S  V  P  W  C  T  *  Q  Q  Q  W  S  W  </first_frame>
            <second_frame>  *  P  P  A  L  L  F  S  P  K  F  F  P  K  T  L  N  F  E  F  K  V  E  Q  S  K  R  N  L  Y  T  N  N  E  G  R  R  N  *  E  A  K  R  C  C  E  G  L  C  E  *  T  F  V  F  I  S  Y  L  L  C  *  *  S  S  C  N  Y  F  *  P  S  R  Y  I  H  A  S  T  S  F  V  S  W  S  T  L  S  P  C  F  S  P  S  *  C  F  S  N  R  P  S  *  P  P  L  P  I  P  R  R  Q  V  P   : *  R  T  E  G  V  G  S  M  P  S  N  A  G  *  C  *  S  G  *  T  W  *  Y  Y  *  Y  K  R  V  Q  Q  H  V  L  G  Q  G  W  *  R  S  *  N  K   : Y  F  I  S  N  L  L  F  E  G  Q  G  I  *  S  V  G  E  S  C  T  G  S  T  M  :  V  *  S  C  Y  Q  G  *  S  F  V  L  *   : G  I  G  M  S  D  R  E  S  H  A  H  L  *  *  R :   E  N  P  A  L  M  F  A  V  W  S  *  R  W  V  A  F  F  I  L  F  L  F  D  K  E   : V  *  *  R  K  C  G  G  S  *  I  *  R  A  G  T  E  W  T  *  Y  K  A  F  G  Q  I  C  F  V  Y  A  *  I  Q  L  *  S  F  S  L  Q  S  *  V  L  S  S  M  R  *  I  S  E  M  L  *  T  N  I  *  :  I  A  *  K  G  S  V  P  P  Q  V  Y  P  G  A  L  S  S  S  N  G  V  G </second_frame>
            <third_frame>   S  L  P  L  F  S  S  P  P  N  S  S  P  K  L  S  I  L  N  S  K  L  N  N  R  R  E  I  C  I  Q  T  M  R  E  E  E  I  E  R  L  R  G  V  V  R  D  C  V  S  K  H  L  Y  S  S  A  I  F  F  A  D  K  V  A  A  I  T  S  D  P  A  D  I  Y  M  Q  A  Q  A  L  Y  L  G  R  H  Y  R  R  A  F  H  L  L  N  A  S  Q  I  V  L  R  D  L  R  F  R  Y  L  A  A  K  C  L  :  E  E  L  K  E  W  D  Q  C  L  L  M  L  G  D  A  K  V  D  E  H  G  N  I  T  D  T  R  E  F  N  S  M  Y  L  D  K  D  G  E  D  R  E  I  N  :  I  L  S  A  I  C  F  L  R  G  K  A  Y  E  A  L  E  N  R  A  Q  A  R  L  W :   Y  K  A  A  I  K  A  D  P  L  C  Y  E  :  A  L  E  C  L  I  E  N  H  M  L  T  C  D  E   : E  R  T  L  L  S  C  L  Q  F  G  P  E  D  G  W  L  S  S  F  Y  S  C  L  I  K  K  :  Y  D  K  E  N  V  V  E  A  K  F  R  E  L  E  Q  S  G  P  N  T  K  L  S  D  K  S  V  L  C  T  L  K  S  N  S  D  L  L  A  C  K  A  E  Y  Y  H  Q  C  G  E  Y  Q  K  C  F  E  L  T  S  E :   L  L  E  K  D  P  F  H  L  K  C  T  L  V  H  L  A  A  A  M  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50477" stop="50136"/>
                    <exon start="48236" stop="48102"/>
                    <exon start="47996" stop="47923"/>
                    <exon start="46932" stop="46893"/>
                    <exon start="46617" stop="46572"/>
                    <exon start="45681" stop="45602"/>
                    <exon start="45338" stop="45157"/>
                    <exon start="44993" stop="44927"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPLFSSPPNSSPKLSILNSKLNNRREICIQTMREEEIERLRGVVRDCVSKHLYSSAIFFADKVAAITSDPADIYMQAQALYLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKVDEHGNITDTREFNSMYLDKDGEDREINILSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCDEERTLLSCLQFGPEDGWLSSFYSCLIKKYDKENVVEAKFRELEQSGPNTKLSDKSVLCTLKSNSDLLACKAEYYHQCGEYQKCFELTSELLEKDPFHLKCTLVHLAAAMEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51362" PGL_stop="52023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51362" e_stop="52023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="51362" e_stop="52023" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51362" stop="52023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTTGAACAATTTAGGAATGCGAAAATGGAGAAAGTGAAAAAGGTATCATCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGCTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</gDNA_template>
            <first_frame> F  I  *  T  I  *  E  C  E  N  G  E  S  E  K  G  I  I  F  Q  S  L  F  S  T  S  P  A  K  R  C  *  N  R  P  S  T  L  P  *  S  *  S  Q  P  W  K  R  Q  N  Y  *  T  F  S  L  F  S  T  L  L  *  S  H  H  L  Q  A  R  Q  R  *  T  L  S  R  N  G  K  N  H  R  *  I  E  T  G  H  S  S  F  S  Q  R  S  C  F  L  Q  C  Y  F  F  L  W  K  S  T  F  T  *  *  G  S  S  Y  V  *  *  N  T  L  F  S  L  L  *  K  Y  K  I  C  *  *  L  V  E  C  T  F  S  L  *  R  I  Q  Q  D  W  *  N  V  K  Q  L  *  K  L  R  N  P  R  C  L  Y  V  *  Y  I  D  E  C  V  L  F  V  W  *  F  G  W  C  T  G  G  V  *  *  N  V  *  E  R  N  S  A  K  C  G  D  F  W  D  V  D  *  W  A  L  C  E  S  R  N  *  R  G  V  *  D   </first_frame>
            <second_frame>  S  F  E  Q  F  R  N  A  K  M  E  K  V  K  K  V  S  S  F  S  L  S  S  L  L  R  Q  Q  K  D  A  K  I  A  L  Q  L  F  L  N  P  N  P  S  H  G  S  D  K  T  T  K  P  F  R  Y  S  P  L  C  Y  D  L  I  I  C  K  L  G  R  G  K  L  F  Q  E  M  E  K  I  I  D  K  L  R  Q  D  T  R  V  S  L  N  E  V  V  F  C  N  V  I  S  F  Y  G  R  A  H  L  P  D  K  A  L  H  M  F  N  E  I  P  S  F  R  C  Y  R  S  I  K  S  V  N  S  L  L  N  A  L  L  A  C  K  E  Y  S  K  I  G  E  M  L  N  N  F  E  N  Y  A  T  P  D  V  C  T  F  N  I  L  M  N  A  C  C  L  C  G  D  L  G  G  A  R  E  V  F  D  E  M  C  E  R  G  I  Q  P  N  V  V  T  F  G  T  L  I  N  G  L  C  V  N  R  E  I  N  E  A  F  R  M  </second_frame>
            <third_frame>   H  L  N  N  L  G  M  R  K  W  R  K  *  K  R  Y  H  L  S  V  S  L  L  Y  F  A  S  K  K  M  L  K  S  P  F  N  S  S  L  I  L  I  P  A  M  E  A  T  K  L  L  N  L  F  V  I  L  H  S  V  M  I  S  S  S  A  S  S  A  E  V  N  S  F  K  K  W  K  K  S  S  I  N  *  D  R  T  L  E  F  L  S  T  K  L  F  S  A  M  L  F  L  F  M  E  E  H  I  Y  L  I  R  L  F  I  C  L  M  K  Y  P  L  F  A  A  I  E  V  *  N  L  L  I  A  C  *  M  H  F  *  L  V  K  N  T  A  R  L  V  K  C  *  T  T  L  K  I  T  Q  P  Q  M  F  V  R  L  I  Y  *  *  M  R  V  V  C  V  V  I  W  V  V  H  G  R  C  L  M  K  C  V  R  E  E  F  S  Q  M  W  *  L  L  G  R  *  L  M  G  F  V  *  I  E  K  L  T  R  R  L  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51363" stop="52022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFEQFRNAKMEKVKKVSSFSLSSLLRQQKDAKIALQLFLNPNPSHGSDKTTKPFRYSPLCYDLIICKLGRGKLFQEMEKIIDKLRQDTRVSLNEVVFCNVISFYGRAHLPDKALHMFNEIPSFRCYRSIKSVNSLLNALLACKEYSKIGEMLNNFENYATPDVCTFNILMNACCLCGDLGGAREVFDEMCERGIQPNVVTFGTLINGLCVNREINEAFRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="66569" PGL_stop="62894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66569" e_stop="66559"/>
            <exon e_start="66449" e_stop="66384"/>
            <exon e_start="66186" e_stop="66127"/>
            <exon e_start="66013" e_stop="65972"/>
            <exon e_start="65874" e_stop="65825"/>
            <exon e_start="65640" e_stop="65273"/>
            <exon e_start="65132" e_stop="64937"/>
            <exon e_start="64856" e_stop="64713"/>
            <exon e_start="64383" e_stop="64265"/>
            <exon e_start="64086" e_stop="63876"/>
            <exon e_start="63790" e_stop="63553"/>
            <exon e_start="63424" e_stop="63274"/>
            <exon e_start="63182" e_stop="62894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.288" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.959" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.966"/>
          <exon-intron don_prob="0.996" acc_prob="0.894" e_score="0.993"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66569" e_stop="66559" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.826">
            <gDNA_intron_boundary i_start="66558" i_stop="66450" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66449" e_stop="66384" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.288" acc_prob="0.989">
            <gDNA_intron_boundary i_start="66383" i_stop="66187" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66186" e_stop="66127" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.933">
            <gDNA_intron_boundary i_start="66126" i_stop="66014" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="66013" e_stop="65972" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65971" i_stop="65875" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65874" e_stop="65825" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65824" i_stop="65641" i_length="184"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="65640" e_stop="65273" e_length="368"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65272" i_stop="65133" i_length="140"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65132" e_stop="64937" e_length="196"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64856" e_stop="64713" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.880">
            <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64383" e_stop="64265" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64086" e_stop="63876" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.956">
            <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="0.966">
            <gDNA_exon_boundary e_start="63790" e_stop="63553" e_length="238"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="63552" i_stop="63425" i_length="128"/>
          </intron>
          <exon e_serial="12" e_score="0.993">
            <gDNA_exon_boundary e_start="63424" e_stop="63274" e_length="151"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.894">
            <gDNA_intron_boundary i_start="63273" i_stop="63183" i_length="91"/>
          </intron>
          <exon e_serial="13" e_score="0.917">
            <gDNA_exon_boundary e_start="63182" e_stop="62894" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66569" stop="66559"/>
              <exon start="66449" stop="66384"/>
              <exon start="66186" stop="66127"/>
              <exon start="66013" stop="65972"/>
              <exon start="65874" stop="65825"/>
              <exon start="65640" stop="65310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65558" stop="65273"/>
              <exon start="65132" stop="64937"/>
              <exon start="64856" stop="64713"/>
              <exon start="64383" stop="64347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65398" stop="65273"/>
              <exon start="65132" stop="64937"/>
              <exon start="64856" stop="64713"/>
              <exon start="64383" stop="64265"/>
              <exon start="64086" stop="64040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65093" stop="64937"/>
              <exon start="64856" stop="64713"/>
              <exon start="64383" stop="64265"/>
              <exon start="64086" stop="63876"/>
              <exon start="63790" stop="63710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65078" stop="64937"/>
              <exon start="64856" stop="64713"/>
              <exon start="64383" stop="64265"/>
              <exon start="64086" stop="63878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64833" stop="64713"/>
              <exon start="64383" stop="64265"/>
              <exon start="64086" stop="63876"/>
              <exon start="63790" stop="63595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64320" stop="64265"/>
              <exon start="64086" stop="63876"/>
              <exon start="63790" stop="63553"/>
              <exon start="63424" stop="63274"/>
              <exon start="63182" stop="63169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64320" stop="64265"/>
              <exon start="64086" stop="63876"/>
              <exon start="63790" stop="63553"/>
              <exon start="63424" stop="63274"/>
              <exon start="63182" stop="63171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63913" stop="63876"/>
              <exon start="63790" stop="63553"/>
              <exon start="63424" stop="63274"/>
              <exon start="63182" stop="62894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATAACAT : GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT : GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT : AAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCAC : GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT : ATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA : GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA : ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG : AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG : GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG : GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGAAGAAGAGAACACTCATATTAGCACCCGAATTGCTGGAACAGT : AGGTTATATGGCTCCGGAGTATGCAATGAGAGGCTACTTGACAGATAAAGCTGATGTTTATAGCTTTGGAGTTGTTTTATTAGAGATTGTCAGTGGGAAAAGCAACACAAACTACAGACCAAAAGAGGAATTTGTTTACCTTCTTGACTGG : GCTTACGTCCTACAAGAACAGGGAAATCTGTTAGAACTAGTTGATCCACGTCTCGGTACCAATTACTCCAAAAAAGAGGCAATGCGGATGATAAACGTGTCTCTTTTGTGCACGAATCCCTCTCCTACTCTCCGACCATCCATGTCTTCTGTAGTGAGTATGCTCGAAGGAAAACTCCCCGTGCAAGCACCAATAATCAAACGTACTACATCAGACGATGAAATGAGATTTAAATCGTTCGAGAAGCTTTCACATGACAGTCAAACAACACAAGTATCAACATACTCTC</gDNA_template>
            <first_frame> F  D  N  M :   F  L  G  N  N  A  L  S  G  A  I  P  S  W  M  F  S  K  R  E  N  M :   D  M  S  Y  N  N  F  T  Q  I  S  T  P  V  C  D  S  S  T  L :   N  L  A  A  S  Y  S  D  T  M  N  N  T  T :   D  A  W  C  S  M  K  P  L  I  C  P  T  D  T  K   : Y  T  S  L  F  I  N  C  G  G  P  R  T  S  F  E  G  N  N  Y  E  A  D  T  T  N  R  G  P  S  Y  F  S  S  P  S  D  R  W  A  F  S  S  S  G  V  Y  V  G  L  Q  A  A  S  Y  I  A  S  N  T  F  S  L  D  V  S  G  P  D  F  Y  N  T  A  R  L  A  P  N  S  L  K  Y  Y  G  L  C  L  Q  G  G  S  Y  R  V  R  L  H  F  A  E  I  M  F  S  N  D  S  T  Y  S  S  L  G  R  R  I  F  D  V  A  I  Q  :  G  R  V  V  L  R  D  F  N  I  M  E  E  A  N  G  V  G  K  V  I  T  K  D  F  P  D  V  T  V  S  S  T  L  E  I  H  L  Y  W  T  G  K  G  T  N  A  I  P  D  R  G  V  Y  G  P  L  I  S  A  I  T  V  T  P   : N  F  R  V  D  T  G  S  G  L  P  V  G  A  V  I  G  I  V  L  A  S  I  V  V  L  L  L  V  L  F  A  L  W  K  K  G  I  F  G  G  K  N  N  Q  E  E  L   : E  L  R  A  L  D  L  Q  T  G  H  F  R  L  R  Q  I  K  A  A  T  N  N  F  D  P  A  N  K  I  G  E  G  G  F  G  P  V  Y  K  :  G  V  L  A  D  G  A  I  I  A  V  K  Q  L  S  S  K  S  K  Q  G  N  R  E  F  V  N  E  I  G  M  I  S  A  L  Q  H  P  N  L  V  K  L  Y  G  C  C  I  E  G  N  Q  L  L  V  I  Y  E  Y  M  E  N  N  C  L  A  R  A  L  F   : G  R  D  D  Q  R  L  N  I  D  W  A  T  R  K  R  I  C  S  G  I  A  K  G  L  A  Y  L  H  E  E  S  R  L  K  I  V  H  R  D  I  K  C  T  N  V  L  L  D  K  D  L  N  A  K  I  S  D  F  G  L  A  K  L  D  E  E  E  N  T  H  I  S  T  R  I  A  G  T  V :   G  Y  M  A  P  E  Y  A  M  R  G  Y  L  T  D  K  A  D  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  K  S  N  T  N  Y  R  P  K  E  E  F  V  Y  L  L  D  W  :  A  Y  V  L  Q  E  Q  G  N  L  L  E  L  V  D  P  R  L  G  T  N  Y  S  K  K  E  A  M  R  M  I  N  V  S  L  L  C  T  N  P  S  P  T  L  R  P  S  M  S  S  V  V  S  M  L  E  G  K  L  P  V  Q  A  P  I  I  K  R  T  T  S  D  D  E  M  R  F  K  S  F  E  K  L  S  H  D  S  Q  T  T  Q  V  S  T  Y  S  </first_frame>
            <second_frame>  L  I  T   : C  F  L  V  T  M  H  *  A  E  Q  F  P  A  G  C  L  V  K  E  R  T   : W  I  C  H  T  T  I  S  H  K  Y  L  L  Q  Y  A  I  P  L  P   : *  T  *  L  L  A  T  P  I  Q  *  T  T  P   : R  M  P  G  V  L  *  N  P  S  F  V  P  Q  T  R  N  :  I  L  H  Y  S  *  T  A  E  D  L  E  L  H  L  R  E  I  I  M  R  Q  T  R  P  I  E  V  R  H  I  F  L  R  P  L  T  D  G  L  S  A  V  Q  E  C  T  W  V  F  K  L  P  V  I  L  H  Q  I  H  F  H  W  M  C  P  V  L  T  S  T  I  Q  H  A  L  P  L  I  P  S  N  I  M  G  F  A  Y  K  E  V  A  T  E  C  A  F  T  L  L  K  *  C  F  L  M  T  Q  H  I  A  A  L  E  G  G  Y  L  M  *  Q  Y  K :   G  E  *  F  *  G  I  S  T  L  W  R  K  L  T  V  L  G  K  S  L  P  R  T  F  L  M  L  L  L  V  A  L  W  R  F  I  C  I  G  P  G  R  G  L  T  L  F  Q  T  E  V  Y  M  D  H  *  F  Q  L  S  Q  *  H  Q  :  T  L  E  L  T  L  V  V  A  Y  L  L  E  L  L  S  A  L  Y  S  L  Q  L  *  C  F  C  *  F  Y  L  L  C  G  R  K  A  F  L  E  G  K  I  T  K  K  N  *  :  N  S  E  P  L  I  Y  K  Q  V  I  L  D  L  D  K  L  K  L  L  L  I  T  L  I  L  P  T  K  L  V  K  E  G  L  D  Q  F  T  R :   V  Y  S  P  M  V  P  S  *  L  L  S  S  C  L  P  S  Q  S  K  E  I  V  N  L  S  M  R  *  A  *  F  Q  L  Y  N  T  Q  T  L  S  S  F  T  V  V  A  *  K  G  T  S  Y  *  *  Y  T  N  T  W  K  I  T  V  L  L  E  L  S  L  :  A  V  T  I  R  D  *  T  *  T  G  Q  P  E  K  G  Y  A  Q  E  *  Q  K  G  *  L  T  F  M  K  N  Q  G  *  K  S  S  I  E  I  *  S  V  R  M  C  F  L  I  R  I  *  T  R  R  F  Q  I  L  D  W  L  N  *  M  K  K  R  T  L  I  L  A  P  E  L  L  E  Q   : *  V  I  W  L  R  S  M  Q  *  E  A  T  *  Q  I  K  L  M  F  I  A  L  E  L  F  Y  *  R  L  S  V  G  K  A  T  Q  T  T  D  Q  K  R  N  L  F  T  F  L  T  G :   L  T  S  Y  K  N  R  E  I  C  *  N  *  L  I  H  V  S  V  P  I  T  P  K  K  R  Q  C  G  *  *  T  C  L  F  C  A  R  I  P  L  L  L  S  D  H  P  C  L  L  *  *  V  C  S  K  E  N  S  P  C  K  H  Q  *  S  N  V  L  H  Q  T  M  K  *  D  L  N  R  S  R  S  F  H  M  T  V  K  Q  H  K  Y  Q  H  T  L </second_frame>
            <third_frame>   *  *  H  :  V  S  W  *  Q  C  I  K  R  S  N  S  Q  L  D  V  *  *  K  R  E  H  :  G  Y  V  I  Q  Q  F  H  T  N  I  Y  S  S  M  R  F  L  Y  L  :  K  L  S  C  *  L  L  R  Y  N  E  Q  H  H  :  G  C  L  V  F  Y  E  T  P  H  L  S  H  R  H  E  I :   Y  F  T  I  H  K  L  R  R  T  *  N  F  I  *  G  K  *  L  *  G  R  H  D  Q  *  R  S  V  I  F  F  F  A  L  *  Q  M  G  F  Q  Q  F  R  S  V  R  G  S  S  S  C  Q  L  Y  C  I  K  Y  I  F  T  G  C  V  R  S  *  L  L  Q  Y  S  T  P  C  P  *  F  P  Q  I  L  W  A  L  P  T  R  R  *  L  Q  S  A  P  S  L  C  *  N  N  V  F  *  *  L  N  I  *  Q  P  W  K  A  D  I  *  C  S  N  T   : R  E  S  S  F  E  G  F  Q  H  Y  G  G  S  *  R  C  W  E  S  H  Y  Q  G  L  S  *  C  Y  C  *  *  H  S  G  D  S  F  V  L  D  R  E  G  D  *  R  Y  S  R  Q  R  C  I  W  T  T  D  F  S  Y  H  S  D  T  K :   L  *  S  *  H  W  *  W  L  T  C  W  S  C  Y  R  H  C  T  R  F  N  C  S  A  S  A  S  F  I  C  S  V  E  E  R  H  F  W  R  E  K  *  P  R  R  I  R :   T  Q  S  P  *  F  T  N  R  S  F  *  T  *  T  N  *  S  C  Y  *  *  L  *  S  C  Q  Q  N  W  *  R  R  V  W  T  S  L  Q   : G  C  T  R  R  W  C  H  H  S  C  *  A  A  V  F  Q  V  K  A  R  K  S  *  I  C  Q  *  D  R  H  D  F  S  S  T  T  P  K  P  C  Q  A  L  R  L  L  H  R  R  E  P  V  I  S  D  I  R  I  H  G  K  *  L  S  C  S  S  S  L  W :   P  *  R  S  E  I  K  H  R  L  G  N  Q  K  K  D  M  L  R  N  S  K  R  V  S  L  P  S  *  R  I  K  V  E  N  R  P  *  R  Y  K  V  Y  E  C  A  S  *  *  G  S  E  R  E  D  F  R  F  W  I  G  *  I  R  *  R  R  E  H  S  Y  *  H  P  N  C  W  N  S  :  R  L  Y  G  S  G  V  C  N  E  R  L  L  D  R  *  S  *  C  L  *  L  W  S  C  F  I  R  D  C  Q  W  E  K  Q  H  K  L  Q  T  K  R  G  I  C  L  P  S  *  L   : G  L  R  P  T  R  T  G  K  S  V  R  T  S  *  S  T  S  R  Y  Q  L  L  Q  K  R  G  N  A  D  D  K  R  V  S  F  V  H  E  S  L  S  Y  S  P  T  I  H  V  F  C  S  E  Y  A  R  R  K  T  P  R  A  S  T  N  N  Q  T  Y  Y  I  R  R  *  N  E  I  *  I  V  R  E  A  F  T  *  Q  S  N  N  T  S  I  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66569" stop="66559"/>
                    <exon start="66449" stop="66384"/>
                    <exon start="66186" stop="66127"/>
                    <exon start="66013" stop="65972"/>
                    <exon start="65874" stop="65825"/>
                    <exon start="65640" stop="65273"/>
                    <exon start="65132" stop="64937"/>
                    <exon start="64856" stop="64713"/>
                    <exon start="64383" stop="64265"/>
                    <exon start="64086" stop="63876"/>
                    <exon start="63790" stop="63553"/>
                    <exon start="63424" stop="63274"/>
                    <exon start="63182" stop="62895"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1944</number_coding_nucleotides>
                  <number_encoded_amino_acids>648</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDNMFLGNNALSGAIPSWMFSKRENMDMSYNNFTQISTPVCDSSTLNLAASYSDTMNNTTDAWCSMKPLICPTDTKYTSLFINCGGPRTSFEGNNYEADTTNRGPSYFSSPSDRWAFSSSGVYVGLQAASYIASNTFSLDVSGPDFYNTARLAPNSLKYYGLCLQGGSYRVRLHFAEIMFSNDSTYSSLGRRIFDVAIQGRVVLRDFNIMEEANGVGKVITKDFPDVTVSSTLEIHLYWTGKGTNAIPDRGVYGPLISAITVTPNFRVDTGSGLPVGAVIGIVLASIVVLLLVLFALWKKGIFGGKNNQEELELRALDLQTGHFRLRQIKAATNNFDPANKIGEGGFGPVYKGVLADGAIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLVIYEYMENNCLARALFGRDDQRLNIDWATRKRICSGIAKGLAYLHEESRLKIVHRDIKCTNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVLLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPRLGTNYSKKEAMRMINVSLLCTNPSPTLRPSMSSVVSMLEGKLPVQAPIIKRTTSDDEMRFKSFEKLSHDSQTTQVSTYS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="71963" PGL_stop="69439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71963" e_stop="71887"/>
            <exon e_start="71795" e_stop="71645"/>
            <exon e_start="69472" e_stop="69439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.982" e_score="0.909"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="0.907"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="71963" e_stop="71887" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71886" i_stop="71796" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="71795" e_stop="71645" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="71644" i_stop="69473" i_length="2172"/>
          </intron>
          <exon e_serial="3" e_score="0.912">
            <gDNA_exon_boundary e_start="69472" e_stop="69439" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71963" stop="71887"/>
              <exon start="71795" stop="71645"/>
              <exon start="69472" stop="69439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCTTATCTCCTCCCTTTTCTCCATTCCCGCCTTTCATTTCAAGGCTTCAACAACTTGAACACATTCTTCATTAATT : CATTCGAGACTACACAACTTGAAAAAATTGAATTTCTTCGACTGAACAATAATGGATGCTACTTGTATCAGATTTTGTGTTATATTTCTCTTTCTATATCTGCTTTCTACATTCAGATCTGTTGACGCTCAACTTTTGCCAGAAGATGAAG : TAAGAGTTCTGCAAACAATATCATCGAAACTTCA</gDNA_template>
            <first_frame> R  L  S  P  P  F  S  P  F  P  P  F  I  S  R  L  Q  Q  L  E  H  I  L  H  *  F :   I  R  D  Y  T  T  *  K  N  *  I  S  S  T  E  Q  *  W  M  L  L  V  S  D  F  V  L  Y  F  S  F  Y  I  C  F  L  H  S  D  L  L  T  L  N  F  C  Q  K  M  K  :  *  E  F  C  K  Q  Y  H  R  N  F  </first_frame>
            <second_frame>  A  Y  L  L  P  F  L  H  S  R  L  S  F  Q  G  F  N  N  L  N  T  F  F  I  N   : S  F  E  T  T  Q  L  E  K  I  E  F  L  R  L  N  N  N  G  C  Y  L  Y  Q  I  L  C  Y  I  S  L  S  I  S  A  F  Y  I  Q  I  C  *  R  S  T  F  A  R  R  *  S :   K  S  S  A  N  N  I  I  E  T  S </second_frame>
            <third_frame>   L  I  S  S  L  F  S  I  P  A  F  H  F  K  A  S  T  T  *  T  H  S  S  L  I  :  H  S  R  L  H  N  L  K  K  L  N  F  F  D  *  T  I  M  D  A  T  C  I  R  F  C  V  I  F  L  F  L  Y  L  L  S  T  F  R  S  V  D  A  Q  L  L  P  E  D  E   : V  R  V  L  Q  T  I  S  S  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71962" stop="71887"/>
                    <exon start="71795" stop="71671"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYLLPFLHSRLSFQGFNNLNTFFINSFETTQLEKIEFLRLNNNGCYLYQILCYISLSISAFYIQIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="92847" PGL_stop="77147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91809" e_stop="91594"/>
            <exon e_start="91479" e_stop="91083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="91809" e_stop="91594" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91593" i_stop="91480" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="91479" e_stop="91083" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91809" stop="91594"/>
              <exon start="91479" stop="91174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91318" stop="91083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAG : GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATATGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  :  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  H  D  S  I  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  N  L  E  R  C  *  Y  T  Q  S  N  E  S  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  L  F  I  C  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  R  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  M  I  V  Y  E  E  R  S  V  T  Y  Q  H  E  R  N  K  D  N  E  I  L  K  D  V  N  I  L  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  D  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  C  L  F  V </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  G  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P   : G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  *  *  Y  M  R  S  G  V  S  R  T  N  T  R  G  I  K  I  M  K  S  *  K  M  L  I  Y  S  I  *  *  I  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  V  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91628" stop="91594"/>
                    <exon start="91479" stop="91296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMRIGVSRSDTRIEYGSGVTFRHQDRMRIGVSRSDTMIVYEERSVTYQHERNKDNEILKDVNILNLMNLIPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92847" e_stop="92508"/>
            <exon e_start="77325" e_stop="77147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="92847" e_stop="92508" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92507" i_stop="77326" i_length="15182"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="77325" e_stop="77147" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92847" stop="92508"/>
              <exon start="77325" stop="77147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTC : GAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</gDNA_template>
            <first_frame> L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  I  R  K  L  R  L  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  *  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  C  D  R  S  G  T  Y  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  H  Q  I  L  F  L  E  K  *  A  E  A  T  D  P  T  T  D  R   : R  G  G  L  V  P  K  H  L  E  F  *  I  L  D  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  W  A  V  T  D  P  L  V  K  F  S  L  *  N  L  *  R  K  Q  K  D  G  P  S  Q </first_frame>
            <second_frame>  L  M  R  I  C  L  M  R  R  N  L  L  P  F  *  I  E  K  F  A  S  *  D  *  G  R  L  H  P  S  K  F  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  Q  I  C  E  K  D  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  V  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  I  R  F  Y  F  W  K  N  R  L  R  R  R  T  P  R  R  T  V  :  E  G  V  S  F  Q  N  T  *  N  S  E  F  W  I  L  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  L  *  *  N  L  V  S  E  I  C  D  G  S  R  R  T  D  R  R   </second_frame>
            <third_frame>   *  *  E  F  V  L  *  G  G  T  C  C  H  S  R  *  R  N  S  Q  V  E  I  K  G  D  C  I  H  Q  S  S  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  R  Y  V  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  *  S  F  G  D  V  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  S  D  F  I  S  G  K  I  G  *  G  D  G  P  H  D  G  P  S :   R  G  S  R  S  K  T  L  R  I  L  N  F  G  Y  *  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  M  G  R  H  R  S  F  S  E  I  *  S  L  K  F  V  T  E  A  E  G  R  T  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92774" stop="92508"/>
                    <exon start="77325" stop="77299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRLHPSKFNGRIDPLKKPLGRRRQICEKDTHICLQIQVLLFALVFLLVIVRGRTMGKLVSIVTTCLVVLSIRFYFWKNRLRRRTPRRTVEGVSFQNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="93251" PGL_stop="93427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93251" e_stop="93427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="93251" e_stop="93427" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93251" stop="93427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  T  Y  P  P  T  L  E  *  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  S  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0188O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="105293" PGL_stop="106642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105293" e_stop="106642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="105293" e_stop="106642" e_length="1350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105293" stop="106004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105293" stop="105888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105293" stop="105818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105364" stop="106042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105364" stop="105722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105813" stop="106470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105882" stop="106642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105882" stop="106541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106284" stop="106614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAAGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCTGAT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  N  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  F  F  L  P  Q  H  F  *  Y  P  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  K  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  F  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  E  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  I  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  K  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  I  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  F  S  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  R  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  S  R  G  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  *  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  R  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  R  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  V  S  A  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  K  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  F  S  P  *  N  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  N  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  L   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  *  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  Q  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  V  F  S  P  S  T  F  L  I  P  F  S  N  A  L  H  V  P  S  R  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  G  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  R  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  E  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  Y  R  L  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  K  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  T  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106019" stop="106264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIEKSISLSGGIPGRSAGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRIGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105557" stop="105796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105489" stop="105686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTLLKCSSCSFSLFEYTNISSMNTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="107306" PGL_stop="105865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107306" e_stop="107133"/>
            <exon e_start="106391" e_stop="105865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="107306" e_stop="107133" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107132" i_stop="106392" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="106391" e_stop="105865" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107306" stop="107133"/>
              <exon start="106391" stop="105865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAG : AAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCTTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  I  R  Q  N  P  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  S  R  Y  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  S  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  L  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  P  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  *  T  K  C  I  S  L  G  C  S  S  F  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  V  Y  G  K  I  L  P  R :   N  G  *  L  *  C  N  F  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  A  D  T  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  R  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  L  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  P  R  E  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  L  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  Y  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  I  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  F  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  S  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  K  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107304" stop="107133"/>
                    <exon start="106391" stop="105904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGCRLLHMRLSFVHYPGMPPNCVSVHKSGFRRFVKGLRSELRISALQVAYTAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPIRIISFLRAKKMVSKGCLAFFAHLKDDTTQVPSIESVSVVCEFLDVFPADLPGMPPDRDIDFSIDLEPGTRPISIPPYRMAPAKLRELKAQLQELLSKGFLDQVHLLGVLQFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="107209" PGL_stop="108000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107209" e_stop="108000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="107209" e_stop="108000" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107209" stop="107929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107213" stop="107876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107568" stop="108000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAATCCGCTCTTGTGGACTGAAACACAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCATAGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTAGTTGAAACTCAACATGTGACCGCCACCACATTTTGGCGTTTCCTTGGAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACTAGAAAATCATAGGTATCCTCAGATTCAGCACCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> A  K  S  A  L  V  D  *  N  T  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  *  S  E  G  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  E  T  Q  H  V  T  A  T  T  F  W  R  F  L  G  T  D  K  S  Q  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  L  E  N  H  R  Y  P  Q  I  Q  H  P  L  R  L  E  V  S  I  S  R  T  *  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  L  D  V  E  T  C  L  C  P  M  R  H  P  Y  D  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  K  R  A  P  D  L  S  S  R  G  *  A  G  V  A  I  P  H  F  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  R  N  P  L  L  W  T  E  T  Q  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  H  S  P  R  D  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  *  L  K  L  N  M  *  P  P  P  H  F  G  V  S  L  E  L  I  S  H  K  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  *  K  I  I  G  I  L  R  F  S  T  L  *  D  W  R  F  Q  F  Q  E  L  N  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  *  T  W  K  R  A  Y  V  Q  *  D  I  H  T  M  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  I  Y  H  L  G  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </second_frame>
            <third_frame>   E  I  R  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  I  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  S  *  N  S  T  C  D  R  H  H  I  L  A  F  P  W  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  V  S  S  D  S  A  P  F  K  T  G  G  F  N  F  K  N  L  M  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  T  S  I  R  *  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107723" stop="107998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISEHLIYHLGGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107211" stop="107420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRSCGLKHSWVAYRDNARNLASYAVTDILPCSRLKNSSLFLSLIVRGIYFSINKLENDAQVIGGASVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107401" stop="107604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVPLLVETQHVTATTFWRFLGTDKSQTQHQTVLLYPSCVVAHDSQLENHRYPQIQHPLRLEVSISRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107802" stop="107999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNPSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="108721" PGL_stop="108007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108721" e_stop="108007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="108721" e_stop="108007" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108721" stop="108007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCAAACGTACCGTCATCTTCAACTCAACCGCAATTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTTTTATTTAATGAGTTTGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTCTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATTTGACCATCTTCACTCTCTTTCACAGATGGTTAGAAATAGAGCAACAACTACGCCAACACCAACACCAGCACCTGCGGGACAGGGTGCGTCTGAGCCAACCACTGGGGCTGTAG</gDNA_template>
            <first_frame> Q  Q  T  Y  R  H  L  Q  L  N  R  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  L  P  H  V  L  M  P  *  S  S  G  M  D  *  L  L  L  V  L  A  F  R  I  L  L  V  *  *  F  D  H  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  V  L  F  N  E  F  E  S  S  A  L  F  T  V  D  I  I  L  K  C  *  S  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  H  G  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  S  H  K  N  K  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  F  D  H  L  H  S  L  S  Q  M  V  R  N  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  T  T  G  A  V  </first_frame>
            <second_frame>  S  K  R  T  V  I  F  N  S  T  A  I  L  A  S  L  R  H  I  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  F  L  M  S  *  C  L  E  V  P  A  W  T  S  F  Y  L  F  *  L  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  W  F  Y  L  M  S  L  S  L  P  H  Y  L  L  L  I  L  Y  *  N  V  R  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  T  V  R  I  W  V  V  T  N  L  V  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  S  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  H  R  W  L  E  I  E  Q  Q  L  R  Q  H  Q  H  Q  H  L  R  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  P  Q  F  *  P  V  F  V  T  S  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  T  C  F  S  F  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  G  F  I  *  *  V  *  V  F  R  I  I  Y  C  *  Y  Y  I  E  M  L  E  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  R  S  G  F  G  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  L  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  T  D  G  *  K  *  S  N  N  Y  A  N  T  N  T  S  T  C  G  T  G  C  V  *  A  N  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108249" stop="108007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYSSLRGYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFHRWLEIEQQLRQHQHQHLRDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="109698" PGL_stop="110256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109698" e_stop="110256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="109698" e_stop="110256" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109698" stop="110256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109698" stop="110256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109699" stop="110256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109699" stop="110245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109699" stop="110172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGATCAATCCTCTCTCTCTCTTTGTCCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAGTAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATTCGACCCAGACTGGGATTACGCAACCTGCGACGGCCCGTCGTGCCTGCGACGGTCCGCTCTGCAGGTCGTCGCAAGGTTCAGAGACTGGATTTCCACTGACGATTCTGTGACGGTCCGTCACACCTGTGACAGTCCGTCCTGCCATTTCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCATGCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTTGCCTCAGCCTGTTTTTCCAGAAATAAAATCTGATGCTCAAAACGACTAAACAGGTCGTTACAG</gDNA_template>
            <first_frame> L  D  Q  S  S  L  S  L  C  P  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  D  G  N  S  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  F  D  P  D  W  D  Y  A  T  C  D  G  P  S  C  L  R  R  S  A  L  Q  V  V  A  R  F  R  D  W  I  S  T  D  D  S  V  T  V  R  H  T  C  D  S  P  S  C  H  F  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  I  F  *  V  F  *  N  E  T  M  R  R  S  V  V  P  M  T  V  R  R  G  V  R  C  L  S  L  F  F  Q  K  *  N  L  M  L  K  T  T  K  Q  V  V  T  </first_frame>
            <second_frame>  S  I  N  P  L  S  L  F  V  L  S  I  F  F  I  Q  T  L  F  L  L  P  *  L  A  Y  N  *  E  *  K  M  A  I  V  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  S  T  Q  T  G  I  T  Q  P  A  T  A  R  R  A  C  D  G  P  L  C  R  S  S  Q  G  S  E  T  G  F  P  L  T  I  L  *  R  S  V  T  P  V  T  V  R  P  A  I  S  L  R  S  S  E  S  R  F  S  V  P  N  F  R  F  S  K  C  F  E  T  R  P  C  D  G  P  S  C  P  *  R  S  V  V  G  S  V  A  S  A  C  F  S  R  N  K  I  *  C  S  K  R  L  N  R  S  L  Q </second_frame>
            <third_frame>   R  S  I  L  S  L  S  L  S  F  L  F  S  L  F  K  P  S  F  F  Y  P  N  *  H  I  I  K  N  K  R  W  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  R  R  P  V  V  P  A  T  V  R  S  A  G  R  R  K  V  Q  R  L  D  F  H  *  R  F  C  D  G  P  S  H  L  *  Q  S  V  L  P  F  R  Y  E  V  Q  R  V  D  F  Q  Y  P  I  S  D  F  L  S  V  L  K  R  D  H  A  T  V  R  R  A  H  D  G  P  S  W  G  P  L  P  Q  P  V  F  P  E  I  K  S  D  A  Q  N  D  *  T  G  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109887" stop="110129"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKFDPDWDYATCDGPSCLRRSALQVVARFRDWISTDDSVTVRHTCDSPSCHFVTKFRESIFSTQFQIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 378 chains have been computed
$ 
$ memory statistics:
$ 196216 bytes spliced alignments in total
$ 73 spliced alignments have been stored
$ 2687 bytes was the average size of a spliced alignment
$ 30352 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1445 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 480 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:28:22
-->
