<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:45:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737806" ref_strand="+" ref_description="SGN-E737806 [LC11BB11]">
      <seq>gaacgacagtttcctcctgctgatgtggcaaaagtacttgattccgctgtagcaagcttgcaaccaagttgctcgcagaacactccaatctaccgtgaaatacagaagtgcatgggaatcatcagaaaccaaattctgtcattggtaccaacgtagaccatgtgtaagttgcacggactcttcactttcgatgccgtacccgtatcggattctctaaaaaagtacactacatttggagaacctgccacacacccgttgacatttttgaaagtccgagcaacatgtttatcaactctagtctttttacatcttgtaaactcagtatgcagataataaccttattcatcgttcagctcttagaccaattcaaaacttaattaactgcctcaatggtgatttctgtttttctgttcccctcctaatggagagtggtattgttgaaaatcagtatctgctactacctgttggattgcaagttaaaagaggcatgaaatgatgaattttgttttttggactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="100633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1" g_stop="480" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="533" r_length="480" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E737806" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1" e_stop="480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGCAACCAAGTTGCTCGCAGAACACTCCAATCTACCGTGAAATACAGAAGTGCATGGGAATCATCAGAAACCAAATTCTGTCATTGGTACCAACGTAGACCATGTGTAAGTTGCACGGACTCTTCACTTTCGATGCCGTACCCGTATCGGATTCTCTAAAAAAGTACACTACATTTGGAGAACCTGCCACACACCCGTTGACATTTTTGAAAGTCCGAGCAACATGTTTATCAACTCTAGTCTTTTTACATCTTGTAAACTCAGTATGCAGATAATAACCTTATTCATCGTTCAGCTCTTAGACCAATTCAAAACTTAATTAACTGCCTCAATGGTGATTTCTGTTTTTCTGTTCCCCTCCTAATGGAGAGTGGTATTGTTGAAAATCAGTATCTGCTACTACCTGTTGGATTGCAAGTTAAAAGAGGCATGAAATGATGAATTTTGTTTTTTGGACTATTCCTATGACTTGAGC</genome_strand>
        <mrna_strand>AAGCTTGCAACCAAGTTGCTCGCAGAACACTCCAATCTACCGTGAAATACAGAAGTGCATGGGAATCATCAGAAACCAAATTCTGTCATTGGTACCAACGTAGACCATGTGTAAGTTGCACGGACTCTTCACTTTCGATGCCGTACCCGTATCGGATTCTCTAAAAAAGTACACTACATTTGGAGAACCTGCCACACACCCGTTGACATTTTTGAAAGTCCGAGCAACATGTTTATCAACTCTAGTCTTTTTACATCTTGTAAACTCAGTATGCAGATAATAACCTTATTCATCGTTCAGCTCTTAGACCAATTCAAAACTTAATTAACTGCCTCAATGGTGATTTCTGTTTTTCTGTTCCCCTCCTAATGGAGAGTGGTATTGTTGAAAATCAGTATCTGCTACTACCTGTTGGATTGCAAGTTAAAAGAGGCATGAAATGATGAATTTTGTTTTTTGGACTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254455" ref_strand="-" ref_description="SGN-E254455 [cLEG-27-F22]">
      <seq>aaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8167" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="176" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6884" g_stop="6553" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="508" r_length="332" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E254455" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254455" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAAGTTGCT</genome_strand>
        <mrna_strand>AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261412" ref_strand="-" ref_description="SGN-E261412 [cLEG-57-H13]">
      <seq>atgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggtgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10889" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10589" g_stop="10441" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="292" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="457" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="783" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E261412" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261412" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10589" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGG-TGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261990" ref_strand="-" ref_description="SGN-E261990 [cLEG-58-B21]">
      <seq>atgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10889" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10589" g_stop="10441" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="293" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="458" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="784" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E261990" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261990" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10589" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262067" ref_strand="-" ref_description="SGN-E262067 [cLEG-58-A21]">
      <seq>atgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10889" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10589" g_stop="10441" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="293" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="458" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="784" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E262067" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10589" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>ATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255810" ref_strand="-" ref_description="SGN-E255810 [cLEG-35-K1]">
      <seq>cagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9017" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8717" g_stop="8686" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="197" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="523" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E255810" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255810" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8717" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>CAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256339" ref_strand="-" ref_description="SGN-E256339 [cLEG-37-F13]">
      <seq>atttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgttgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttccccaagtggatgaatgattatattggctttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9007" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8707" g_stop="8686" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="187" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="513" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E256339" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256339" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8707" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>ATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGTTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCCCCAAGTGGATGAATGATTATATTGGCTTTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258058" ref_strand="-" ref_description="SGN-E258058 [cLEG-48-A2]">
      <seq>ttacaagaatcttgccagcagatctttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8166" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="172" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="498" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E258058" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258058" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>AATCTTGCCAGCAGATCTTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259131" ref_strand="-" ref_description="SGN-E259131 [cLEG-41-F24]">
      <seq>tcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8031" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7731" g_stop="7696" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6884" g_stop="6559" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="362" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E259131" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259131" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7731" e_stop="7696"/>
          <exon e_start="6884" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>TCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226646" ref_strand="+" ref_description="SGN-E226646 [cLEL-26-B9](-)">
      <seq>agattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7186" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6886" g_stop="6559" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="351"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E226646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6886" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>AGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226288" ref_strand="+" ref_description="SGN-E226288 [cLEL-26-B9](-)">
      <seq>gattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaatgattatattggcttttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7185" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6885" g_stop="6559" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="350"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E226288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6885" e_stop="6559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</genome_strand>
        <mrna_strand>GATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351598" ref_strand="+" ref_description="SGN-E351598 [cTOS-12-D22]">
      <seq>tggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatgatggtgaattttctacttttctttaagtggatgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9094" stop="6271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8794" g_stop="8686" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="274" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6884" g_stop="6568" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="591" r_length="317" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E351598" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8794" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTG</genome_strand>
        <mrna_strand>TGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216854" ref_strand="+" ref_description="SGN-E216854 [cLEL-1-M13](-)">
      <seq>aaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaaccaaaaaacctttaatcatggtgaattttctacttttctttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8167" stop="6288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="175" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6884" g_stop="6588" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="472" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="496"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E216854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAA</genome_strand>
        <mrna_strand>AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATCATGGTGAATTTTCTACTTTTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351285" ref_strand="+" ref_description="SGN-E351285 [cTOS-6-B14]">
      <seq>ttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatccccttttgctttgccatatttgaagacacttatgagagttggtgttttttctgaacaaaaaacctttaatgatggtgaattttctacttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9131" stop="6290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="159" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="324" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6884" g_stop="6590" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="618" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E351285" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTT</genome_strand>
        <mrna_strand>GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAA-CAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694974" ref_strand="+" ref_description="SGN-E694974 [LH_Ea05F04](-)">
      <seq>tagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagcccagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttttgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatctcgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctttgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtttcatctgttattactggtgcccccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatcgattagtagtccaaaagagcagtgttgttcaagactcagtttgttttttcatcataatgtatttgcatccccttttgctttgccatatttgaagacaccttatgaaaggttggtgtatttttgaaagcaaaaaaccctttaatgatgcctgaatttttctatttttttatagggtggatgaaatgattatattggctttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10903" stop="6259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10603" g_stop="10441" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="307" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="472" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6611" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="749" r_length="277" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="803" polyA_stop="823"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E694974" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10603" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACA-CTTATGAGA-GTTGGTGTTTTTTCTGAACCAAAAAA-CCTTTAATGATG</genome_strand>
        <mrna_strand>TAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCCCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTTTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTTTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTTTCATCTGTTATTACTGGTGCCCCCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCGATTAGTAGTCCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATAATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACCTTATGAAAGGTTGGTGTATTTTTGAAAGCAAAAAACCCTTTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704355" ref_strand="+" ref_description="SGN-E704355 [FA24AC05]">
      <seq>gaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatataggtagacaaatttgtgagatccattagtagttcaaaagagcagtgttgttcaagactcagtttgttttttcatcattatgtatttgcatcccccctttgctttgccatatttgaagacacttatgagagttggtgttttttctgaacaaaaaaaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11001" stop="6318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10701" g_stop="10441" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="405" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="570" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6618" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="838" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E704355" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10701" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCAT-CCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTT</genome_strand>
        <mrna_strand>GAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCCCTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACAAAAAAACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354367" ref_strand="+" ref_description="SGN-E354367 [cTOS-17-M1]">
      <seq>tggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgctgtgatggagaagattgaagctattgttcaaagcaaaccgaagcgccaagattcatatatggagacaaatttgtgagatccattagtagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9094" stop="6444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8794" g_stop="8686" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="274" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6884" g_stop="6744" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="415" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E354367" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8794" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTT</genome_strand>
        <mrna_strand>TGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATATGGAGACAAATTTGTGAGATCCATTAGTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202538" ref_strand="+" ref_description="SGN-E202538 [cLEC-6-P21]">
      <seq>tgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaatgttaacacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10952" stop="6535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10652" g_stop="10441" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="356" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="521" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6835" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="571" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E202538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10652" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGC</genome_strand>
        <mrna_strand>TGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343950" ref_strand="+" ref_description="SGN-E343950 [cTOF-12-I15]">
      <seq>tcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtatcagattcaagagaacatgaaagctatcaatgtgattccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11113" stop="6547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10813" g_stop="10441" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="517" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7696" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="682" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6884" g_stop="6847" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="720" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E343950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10813" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7696"/>
          <exon e_start="6884" e_stop="6847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAGGTCCGTTAGTTTTTCCCTTATTCTGTTATTCATTTCATGAGCTTTCCCTTTCAGACAATAATTCTTTTCTTCAGTGTTAACTCTCACTTCAATAACTGATATCAATCTGGATTAGTTGAGATTCCAGTGTACAGCCTGTGTTATTTCTGTTATTAAAGCATGCATTCATGGAGTTTCTCGTTCTTTTTTGATAAACATGTTGCTTTTTATACCTTTCTGAGCTTACTTTTAGAGTTTTTCTACGTGTCCGCTAACTGTATTAAGCCCTCATAACCCCACCCGCACCCCCACCAGCACCCGAATCCAAAGTTAAAAAGTACTAAAAGGAAGAATCCTCTTGCTTTGGTTTCGAAATATGTACTCATTTTGATTTTGTTTCTACTTTGTATCTCTTCTGATTCAACTTATTTCCATAGACATCTGAGCAAAAAAAGACTAACAATCTTCTTTTTGCATTGTTTTCACTTTCTCCTAATGTTTTGACTGAACAGAATCTTAACTTTTTGCATTTCATTTATATGACTATGTTCGACTAGGCACAACGTTTAAGAAAGAAATAAAAGACTTTAGGCGCATAACATAAGTACCATATGAACTCTGTCATTATTTTCGGAAGAGACTGGAAAGGAAAGAGTGTCATAAAAAATGAAACAGAAAGTAATATTAGTCTATGTTGCTTGGACTCTTTTAAAAAAAAACCTAGGCATATGTCGGATCCTCCAAAATTGCAGTACATATGGTTCAACAACATTTGTTAGGATTCGAGCAAATTTTACGTGGTGTATCTCATGTTTGGTCTACATTAATGCAGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAAT</genome_strand>
        <mrna_strand>TCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703927" ref_strand="+" ref_description="SGN-E703927 [FA22DE02]">
      <seq>cagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctncactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaaagagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11262" stop="7399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10962" g_stop="10441" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="666" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7699" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="828" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E703927" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10962" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTAT</genome_strand>
        <mrna_strand>CAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTNCACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551935" ref_strand="+" ref_description="SGN-E551935 [cTSB-2-F11]">
      <seq>atcaagtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactggtgccaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11281" stop="7406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10981" g_stop="10441" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="685" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7706" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="840" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E551935" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10981" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAA</genome_strand>
        <mrna_strand>ATCAAGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289901" ref_strand="+" ref_description="SGN-E289901 [cLET-9-I4]">
      <seq>aaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgcctcaactggcaattgcctggtgtgctgcaaatcctaatgtctcatctgttattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10910" stop="7416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10610" g_stop="10441" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="314" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7716" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="459" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E289901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10610" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTG</genome_strand>
        <mrna_strand>AAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691134" ref_strand="+" ref_description="SGN-E691134 [LH_Ea05F04]">
      <seq>cgcttcatgccgaattcggcacgaggaaaaaatgcaaatgcccttctagaatttaggcagatcaggtttaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttcttcgacaatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcagacattgttgtgtcaacaaagattttttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagcccagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatctcgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgctgaggaactaggtgtacctctgccctcactggcaattgcctggtgtgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11315" stop="7444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11015" g_stop="10441" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="601" r_length="575" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="745" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7747" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="859" r_length="114" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E691134" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11015" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCT</genome_strand>
        <mrna_strand>AAAAAATGCAAATGCCCTTCTAGAATTTAGGCAGATCAGGTTTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTCGACAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCAGACATTGTTGTGTCAACAAAGATTTTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCCCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCCTCACTGGCAATTGCCTGGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296876" ref_strand="+" ref_description="SGN-E296876 [cLET-26-A5]">
      <seq>tctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggagaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaaaccaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11043" stop="7495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10743" g_stop="10441" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7795" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="513" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E296876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10743" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCT</genome_strand>
        <mrna_strand>TCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAGAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293635" ref_strand="+" ref_description="SGN-E293635 [cLET-15-N22]">
      <seq>tctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11043" stop="7505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10743" g_stop="10441" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="447" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7805" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="503" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E293635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10743" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAA</genome_strand>
        <mrna_strand>TCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308279" ref_strand="+" ref_description="SGN-E308279 [cLEZ-6-A1]">
      <seq>gggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtgctgaggaaagtaaatggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10871" stop="7508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10571" g_stop="10441" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="275" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7811" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="325" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E308279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10571" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGG</genome_strand>
        <mrna_strand>GGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705628" ref_strand="+" ref_description="SGN-E705628 [FA27CG09]">
      <seq>cgcttaaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaattacaagaatcttgccagcagatccttggtggatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11386" stop="7528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11088" g_stop="10441" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="792" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7860" g_stop="7828" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="825" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E705628" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11088" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
          <exon e_start="7860" e_stop="7828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAGGTAGAACCCTCAAAGTTTTACAAGAAAATCCCGTTTGTTTGGGAGCTCTACTTTTCCACTCCTATTGTCTTTTAAGTTAATGCTCTTCTTATATTCACTTAGATCGTTGTTAATTCCTAGTTCACAGCTTCCTATTTTATTTTTTAAAAAATGGTAAAATATTACAGCTTCCTAAATAAATATATGGCAAATTTCTTTGAGCAGCTCATTGAGTGGTCAGCTGTTTGAAGTTCTCCAAATTTAAGACCATTCAGTGATCTTTCAAGCAAATAGTTCTTGTGATTTTAACTAGTATCTTCGTTCATTGAAAACGGATGGTAGATGGTATATGTGTGCCAAAAGAAATTCTTCCCTTACTTGGACACAAGCAGATATTTCTTACTTCTTAATGTTTGTGAGCGGATGTCCTAAACCTGTTTCTTAACAATTCTAGTCTAGAACATCAAAAAAAGAAGTTTTTACATTTTCTTATGTGCTACAACCTAGAACTATAAGATAAAAGTCACTTACAAGAAAAGGAAGTGCTATTGGCAAGTGGATTCAGAATTCTTTTATTATTCGTCATGATTTGTGTTCATATGTTATAAAAGTCTCTATTTTATGAGTTGCTTCCAAATTGATGAACCAAAAGTCCAATAATCGAAAGTTAAAGTTTTCCGTGTAAGTAAGATCAGATATATGTATGTGCGGGCTTATCAAACTTCATGTATTAATGCGTATATATATGCATGCTTTGTTATTTTGTTAACTTTTCTTTGGGAATTGCCACTCTTTTAATCTTACTCCTTTTTGAAGAAACTTGACTAGTAATCTTATGCATTGCAGAATCTTGCCAGCAGATCCTTGGTGGATGATGTG</genome_strand>
        <mrna_strand>CGCTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGCCAGCAGATCCTTGGTGGATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344765" ref_strand="+" ref_description="SGN-E344765 [cTOF-21-N15]">
      <seq>agaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcanggaacattccaccagacagtcgatttgcactggaaaatacaagaatcttgcagcagatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11294" stop="8386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10994" g_stop="10441" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8686" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="697" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E344765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10994" e_stop="10441"/>
          <exon e_start="8829" e_stop="8686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG</genome_strand>
        <mrna_strand>AGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCANGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAA-TACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289512" ref_strand="+" ref_description="SGN-E289512 [cLET-3-K19]">
      <seq>ttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgttgtctaggcataaggttgaatctgagtacctccctctctatagcaactatggaattggtcttaccacatggagtcctctcgcttcaggcgttctgactggaaaatatacctcagggaacattccaccagacagtcgatttgcactggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11198" stop="8392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10898" g_stop="10441" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8829" g_stop="8692" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="596" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E289512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10898" e_stop="10441"/>
          <exon e_start="8829" e_stop="8692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAATGATCTTAGAATGAAGAAATGGGATTCATACAGCCTGGGGCTGAGGCTGAGGCATAACTGTTGTTGTTGTGTTATGGTTTGTTGTAGTTTTTAAGTATGATGATGATGATGATGATGATATTAAATGAGCTTAAATGAAGAAGACGGATTCATATAGTCGATCCAACTTATTTGGAGATGAGGCGTTATTGTTGTTGTTGTTGTTGTGTTATGGTTTGTTGTTGTTTTTGAGTATGATGATGTTATGAAATGAGCTTAAATGAAGAGATGGGATTCATATAGCTGATCTCAACTTATTTGGACTGAGGCATAGCTGTTGTGTTATGGTTTGTTGTTGTTTCAAGTATGATGATGATATGAAATGAGCTTATATGAAGTAGTGATGTTCAGATAGCCAATCCCAACTTATGTGGGATGGAAGCATAGTTGTTGTTCTTGTGTTATGACTTATTGTTGTTTTTAGTATGATGATGATATGAAATAAGTTTAAAGTGAAGAACTTGAATTCATACAGCCGATCCCAACTTGTTTGGGGATGATGCAAAATTGTTGTTGTTGTGTTATGGTTTGTTGTTTTTAGTATGATGATGTTATAAATGAGCTTTAATGAAGAGATGGGATTCATACAGCCGACCCCAACTTGTTTGGGAATCACCATGCTTGTTGATTAATGTAAGGGCGATTTGTCAACAGTTCCCAATATAGTACCTTTGTGTATTGTGTTGGTTTTGAGAACCGAAGCTTAACCAGATGCCTTAGTTGAGCAAATGCTGTGACAGTAACTTCTGTTTTCTTAATATGGTTAGTATAGATTCCTTAATTCCAAGAGTAGTAGAATATGCAGATGTTCAACTAGATAGAAGATTAATCTTTCATTTCATATAAATTGCTGAATGAATGCACAGGCTAGATCTGGTGCATATTACAAATCAATGTCAAAATAGGACACGTGAAATGAAAAAAATAGACGGAGTGGATTGATGGCGATAATTAGTTGACAAGGTGTTTGAGGTAAAAAAAGAGATATTCCCTGACATCCTCTAGGTCTCTCTATAGTTAAACCTTTCAGTGCAAAACTGCATTCTTTTACAGCTGTACGTACAAGGTACTGTTGTGACAACTTCAGTGGAGGATTTTCAGGGTATTGCAAGTCTAGTTTGTATGTGGAAAAAATCTGTTGCCTTTCATTGAACATGTCGCCAACTGTAGAAATTTCTGTGAAGGTGTACTCCAACTCTGAGTATGGTGTAGGACAGTAGGAGCTCCAATGTTGTCCATTGTTTCTTCTTCCTCAGGATCTGTTATTGATTTAGGCTGTTTTTGTTGAGTGGTTCAACGTTGCTGGCTGCTACATATTGGCTGACTGCCATTTTTTTATGCTGACATGAATTTCATTACCTGAACTTGTCAGATTTTAGTGCATTGGCCTTCGCTTGTAGCTCCAATGTCATTATCCCTGTTTGCAACTTGCCATGTGTCTTTACTCTAAAAATACATGGACCTCATTGAATGGTTGCAGGTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAAT</genome_strand>
        <mrna_strand>TTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328138" ref_strand="+" ref_description="SGN-E328138 [cTOC-22-N18]">
      <seq>taatctacacaccaaagaaacttaaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttgttggtcccattgttgagcagcctgagtataacttgntgtctaggcataaggttgaatctgagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11406" stop="10139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11106" g_stop="10441" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10440" i_stop="10364" i_length="77">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10363" g_stop="10349" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="681" r_length="15" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E328138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11106" e_stop="10441"/>
          <exon e_start="10363" e_stop="10349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAGGTAATTTTTTGGACTCTGCTTCTTGGATTTAGATTGTTTCTAGTTTATATTATGGTTTTTTGTTGCTTATGTTTTAGTATGATGATATGAAA</genome_strand>
        <mrna_strand>TAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGNTGTCTAGGCATAAG.............................................................................GTTGAATCTGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285877" ref_strand="+" ref_description="SGN-E285877 [cLES-5-P6]">
      <seq>atgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggggttgctcaaagattggatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11310" stop="10191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11010" g_stop="10491" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E285877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11010" e_stop="10491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTG</genome_strand>
        <mrna_strand>ATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308660" ref_strand="+" ref_description="SGN-E308660 [cLEZ-13-M13]">
      <seq>tctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcatcagattactgaagcatggggggttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11379" stop="10207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11079" g_stop="10507" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E308660" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11079" e_stop="10507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCT</genome_strand>
        <mrna_strand>TCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCATCAGATTACTGAAGCATGGGGGGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246807" ref_strand="+" ref_description="SGN-E246807 [cLEF-41-G3]">
      <seq>gaaacttaaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattactgaagcatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11390" stop="10213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11090" g_stop="10513" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E246807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11090" e_stop="10513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGG</genome_strand>
        <mrna_strand>GAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312196" ref_strand="+" ref_description="SGN-E312196 [cTOA-11-N23]">
      <seq>tctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggggtacaagtgaatggtcagctcagcagattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11379" stop="10225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11079" g_stop="10525" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E312196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11079" e_stop="10525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACT</genome_strand>
        <mrna_strand>TCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211800" ref_strand="+" ref_description="SGN-E211800 [cLEC-66-F17]">
      <seq>aaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtgggtctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggctttttattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11383" stop="10257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11083" g_stop="10557" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E211800" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11083" e_stop="10557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGG</genome_strand>
        <mrna_strand>AAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGGTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266561" ref_strand="+" ref_description="SGN-E266561 [cLEI-5-N5]">
      <seq>caaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgccatacaagaatttaagcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11372" stop="10262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11072" g_stop="10562" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E266561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11072" e_stop="10562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTA</genome_strand>
        <mrna_strand>CAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCCATACAAGAATTTAAGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266446" ref_strand="+" ref_description="SGN-E266446 [cLEI-3-F6]">
      <seq>aaattctcttaaaaagaccaatctttttccccttgtcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcacaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttagggctatgaactatgtgattgataaagggtgggcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11371" stop="10263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11071" g_stop="10563" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E266446" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11071" e_stop="10563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTT</genome_strand>
        <mrna_strand>AAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTGTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCACAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214310" ref_strand="+" ref_description="SGN-E214310 [cLEC-77-J24]">
      <seq>ttaaactctatcacaaattctcttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaagatcggacattgttgtgtcaacaaagatattttggggtggttctggtccaaatgataaagggctttcaagaaaacatataattgaaggaacaaaagcttcattgaagagacttgatatggattatgtagatctgatctattgtcataggcctgatacaagtacacctattgaagaaactgttanggctatgaactatgtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11385" stop="10281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11085" g_stop="10581" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E214310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11085" e_stop="10581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTG</genome_strand>
        <mrna_strand>TTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTANGGCTATGAACTATGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279104" ref_strand="+" ref_description="SGN-E279104 [cLEL-4-M4](-)">
      <seq>caagtctcttcaatgaagcttttgttccttcaattatatgttttcttgaaagccctttatcatttggaccaagaaccaccccccaaatatctttgttgacacaacaatgtccgatcttttccacccaagttcacgaatcgcttgacccatgatttcttctgctctgccattagcataaacctcagcattatcaaagaaattgacaccatggtcacgacaacactgtaaaagggtttttgcttctttaacatcaagttgatttccaaaggtaacccatgctccataagagagctgtgatacctttaggcctgatctgcctaaattcttgtattgcatttgcattttttgagggagatcaagaatcaagaaaagctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10371" stop="11340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10671" g_stop="11047" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E279104" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10671" e_stop="11047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCTTCAATGAAGCTTTTGTTCCTTCAATTATATGTTTTCTTGAAAGCCCTTTATCATTTGGACCA-GAACCA-CCCCAAAATATCTTTGTTGACACAACAATGTCCGATCTTTTCCACCCAAGTTCACGAATCGCTTGACCCATGATTTCTTCTGCTCTGCCATTAGCATAAACCTCAGCATTATCAAAGAAATTGACACCATGGTCACGACAACACTGTAAAAGGGTTTTTGCTTCTTTAACATCAAGTTGATTTCCAAAGGTAACCCATGCTCCATAAGAGAGCTGTGATACCTTTAGACCTGATCTGCCTAAATTCTTGTATTGCATTTGCATTTTTTGAGGGAGATCAAGAATCAAGAAAAGGGGAAAA</genome_strand>
        <mrna_strand>CAAGTCTCTTCAATGAAGCTTTTGTTCCTTCAATTATATGTTTTCTTGAAAGCCCTTTATCATTTGGACCAAGAACCACCCCCCAAATATCTTTGTTGACACAACAATGTCCGATCTTTTCCACCCAAGTTCACGAATCGCTTGACCCATGATTTCTTCTGCTCTGCCATTAGCATAAACCTCAGCATTATCAAAGAAATTGACACCATGGTCACGACAACACTGTAAAAGGGTTTTTGCTTCTTTAACATCAAGTTGATTTCCAAAGGTAACCCATGCTCCATAAGAGAGCTGTGATACCTTTAGGCCTGATCTGCCTAAATTCTTGTATTGCATTTGCATTTTTTGAGGGAGATCAAGAATCAAGAAAAGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265248" ref_strand="+" ref_description="SGN-E265248 [cLEI-9-C19]">
      <seq>gttaaactctatcacaaattctgttaaaaagaccaatctttttccccttttcttgattcttgatctccctcaaaaaatgcaaatgcaatacaagaatttaggcagatcaggtctaaaggtatcacagctctcttatggagcatgggttacctttggaaatcaacttgatgttaaagaagcaaaaacccttttacagtgttgtcgtgaccatggtgtcaatttctttgataatgctgaggtttatgctaatggcagagcagaagaaatcatgggtcaagcgattcgtgaacttgggtggaaaatatcggacattgttgtgtcaacaaagatattttggggtggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11385" stop="10441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11086" g_stop="10741" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E265248" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11086" e_stop="10741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCT</genome_strand>
        <mrna_strand>GTTAAACTCTATCACAAATTCTGTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAATATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216713" ref_strand="+" ref_description="SGN-E216713 [cLEL-1-C11](-)">
      <seq>atctttgttgacacaacaatgtccgatcttttccacccaagttcgcgaatcgcttgacccatgatttcttctgctctgccattagcataaacctcagcattatcaaagaaattgacgccatggtcacgacaacactgtaaaagggtttttgcttctttaacatcaagttgatttccaaaggtaacccatgctccataagagagctgtgatacctttagacctgatctgcctaaattcttgtaatgcatttgcattttttgagggagatcaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10457" stop="11332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10757" g_stop="11032" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E216713" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10757" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTGACACAACAATGTCCGATCTTTTCCACCCAAGTTCACGAATCGCTTGACCCATGATTTCTTCTGCTCTGCCATTAGCATAAACCTCAGCATTATCAAAGAAATTGACACCATGGTCACGACAACACTGTAAAAGGGTTTTTGCTTCTTTAACATCAAGTTGATTTCCAAAGGTAACCCATGCTCCATAAGAGAGCTGTGATACCTTTAGACCTGATCTGCCTAAATTCTTGTATTGCATTTGCATTTTTTGAGGGAGATCAAGAATC</genome_strand>
        <mrna_strand>ATCTTTGTTGACACAACAATGTCCGATCTTTTCCACCCAAGTTCGCGAATCGCTTGACCCATGATTTCTTCTGCTCTGCCATTAGCATAAACCTCAGCATTATCAAAGAAATTGACGCCATGGTCACGACAACACTGTAAAAGGGTTTTTGCTTCTTTAACATCAAGTTGATTTCCAAAGGTAACCCATGCTCCATAAGAGAGCTGTGATACCTTTAGACCTGATCTGCCTAAATTCTTGTAATGCATTTGCATTTTTTGAGGGAGATCAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720095" ref_strand="+" ref_description="SGN-E720095 [FC09DC03]">
      <seq>aatcggccgaattgataccacaattcaccaaccttagactattttttgttttgtttgtttttgtgtgtgtaaggagatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagcaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggactaggtgttggtggtggaattggtggttataaaggtgtaggagttattattccttgaagtgttttactatatagtgttggttaatatttttattttgttattgcatgcatgttatcctagtacttgtgttgtttgaagtgtctagtatttaaattttatgtttttaattaaaagtgttagtattactattatttcctagatcattgtgttatctagtattttatttccaagttattgtgtaataattaaggatataatagtatagtttgcttnnnnnaaannnnannnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15965" stop="17279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16265" g_stop="16980" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="730" r_length="716" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="764"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E720095" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16265" e_stop="16980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTA</genome_strand>
        <mrna_strand>ATACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719985" ref_strand="+" ref_description="SGN-E719985 [FC09BH11]">
      <seq>gggcgattggcggccaatcggccgaattgataccacaattcaccccccttagactattttttgttttgtttgtttttgtgtgtgtaaggagatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagcaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggactaggtgttggtggtggaattggtggttataaaggtgtaggagttattattccttgaagtgttttactatatagtgttggttaatatttttattttgttattgcatgcatgttatcctagtacttgtgttgtttgaagtgtctagtatttaaattttatgtttttaattaaaagtgttagtattactattatttcctagatcattgtgttatctagtattttatttccaagttattgtgtaataattaaggatataatagtatagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15965" stop="17277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16265" g_stop="16977" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="742" r_length="713" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E719985" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16265" e_stop="16977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGC</genome_strand>
        <mrna_strand>ATACCACAATTCACCCCCCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720625" ref_strand="+" ref_description="SGN-E720625 [FC11BD07]">
      <seq>accacaattcaccaaccttagactattttttgttttgtttgtttttgtgtgtgtaaggagatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagcaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggactaggtgttggtggtggaattggtggttataaaggtgtaggagttattattccttgaagtgttttactatatagtgttggttaatatttttattttgttattgcatgcatgttatcctagtacttgtgttgtttgaagtgtctagtatttaaattttatgtttttaattaaaagtgttagtattactattatttcctagatcattgtgttatctagtattttatttccaagttattgtgtaataattaaggatataatagtatagtttgcttaattagattgtgttaattatgttcccaatttcattgggcttgttggtttaacttgttttttttcccaataattaattctatccatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15967" stop="17367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16267" g_stop="17067" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E720625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16267" e_stop="17067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTAATTAGATTGTGTTAATTATGTTCCCAATTTCATTGGGCTTGTTGGTTTAACTTGTTTTTTTTCCCAATAATTAATTCTATCCATTTC</genome_strand>
        <mrna_strand>ACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTAATTAGATTGTGTTAATTATGTTCCCAATTTCATTGGGCTTGTTGGTTTAACTTGTTTTTTTTCCCAATAATTAATTCTATCCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711927" ref_strand="+" ref_description="SGN-E711927 [FB03BF04]">
      <seq>actattttttgttttgtttgtttttgtgtgtgcaaggagatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagcaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggactaggtgttggtggtggaattggtggttataaaggtgtaagagttattattccttgaagtgctttactatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15988" stop="17080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16288" g_stop="16780" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E711927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16288" e_stop="16780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATA</genome_strand>
        <mrna_strand>ACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGCAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAAGAGTTATTATTCCTTGAAGTGCTTTACTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717944" ref_strand="+" ref_description="SGN-E717944 [FC03AG08]">
      <seq>tgtttgtttttgtgtgtgtaaggagatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagcaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggactaggtgttggtggtggaattggtggttataaaggtgtaggagttattattccttgaagtgttttactatatagtgttggttaatatttttattttgttattgcatgcatgttatcctagtacttgtgttgtttgaagtgtctagtatttaaattttatgtttttaattaaaagtgttagtattactattatttcctaaatcattgtgttatctagtattttatttccaagttattgtgtaataattaaggatataatagtatagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16002" stop="17277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16302" g_stop="16977" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E717944" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16302" e_stop="16977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGC</genome_strand>
        <mrna_strand>TGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAAATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712092" ref_strand="+" ref_description="SGN-E712092 [FB03DE04]">
      <seq>gatatagaaacataagtttttggagtaaacaaaatggcaaattggtccataatattcatatttgcactagtactagtccatgccaatgcaagaaatattcctgaggttcaaaatgtaaacactaagactttaagtactaattctccaacaccaagtaaaattggaggacttaatgacaacaaaaattttataacatatggtggcataggtggttgttccggaattggtggagtaggtggggtgttgccaatacttggcggtgccgttggcggcgttggtggtgccgccggtggtgttggtggagtcggtggcggtcttggtggtgccgggttcaaagggattggcggcggtgttggcggtgccggaggtgttggtggtggtggaattggtggttataaaggtgtaggagttattattccttgaagtgttttactatatagtgttggttaatatttttattttgttattgcatgcatgttatcctagtacttgtgttgtttgaagtgtctagtatttaaattttatgtttttaattaaaagtgttagtattactattatttcctagatcattgtgttatctagtattttatttccaagttattgtgtaataattaaggatataatagtatagtttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16024" stop="17280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16324" g_stop="16980" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E712092" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16324" e_stop="16980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTA</genome_strand>
        <mrna_strand>GATATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGTAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGA---------GGT-GT----T--G-G-TGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547788" ref_strand="+" ref_description="SGN-E547788 [TUS-71-N15](-)">
      <seq>atgatgtgttgatgatagtgatcctgatttggatgaaccacaaaatcaacatttattacaaagtgctgaggcaattagaaaagattatcctatgaaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtactaattgaagtaattataatttattatcaagagtgttcaatagtttcttatgggaatggaatgggaaaattatactataaatgcccattctttccctaagagattgaatatgtacataattaataatgatattaataaaatgatatttaatatttattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18825" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18525" g_stop="17631" g_length="895"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E547788" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18525" e_stop="17631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT-ATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTC-TATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATATACTATGTG</genome_strand>
        <mrna_strand>ATGATG-TGTTGATGATAGTGATCCTGATTTGGATGAACCACAAAATCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTATGAAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTACTAATTGAAGTAATTATAATTTATTATCAA-GAGTGTTCAATAGTTTCTTATGGGAATGGAATGGGAAAATTATACTATAAATGCCCATTCTTTCCCTAAGAGATTGAATATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546924" ref_strand="+" ref_description="SGN-E546924 [TUS-70-I16](-)">
      <seq>aattagaaaagattatcctaatgaagattggttacattanncagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtactaattgaagtaattataatttattatcaagagtgttcaatagtttcttatgggaatggaatgggaaaattatactataaatgcccattctttccctaagagattgaatatgtacataattaataatgatattaataaaatgatatttaatatttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18752" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18452" g_stop="17632" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="822" r_length="822" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E546924" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18452" e_stop="17632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT-ATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTC-TATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATATACTATGT</genome_strand>
        <mrna_strand>AATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTANNCAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTACTAATTGAAGTAATTATAATTTATTATCAA-GAGTGTTCAATAGTTTCTTATGGGAATGGAATGGGAAAATTATACTATAAATGCCCATTCTTTCCCTAAGAGATTGAATATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374073" ref_strand="+" ref_description="SGN-E374073 [TUS-33-O11](-)">
      <seq>ctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtactaattgaagtaattataatttattatcaagagtgttcaatagtttcttatgggaatggaatgggaaaattatactataaatgcccattctttccctaagagattgaatatgtacataattaataatgatattaataaaatgatatttaatatttattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18624" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18324" g_stop="17632" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E374073" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18324" e_stop="17632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT-ATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTC-TATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATATACTATGT</genome_strand>
        <mrna_strand>CTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTACTAATTGAAGTAATTATAATTTATTATCAA-GAGTGTTCAATAGTTTCTTATGGGAATGGAATGGGAAAATTATACTATAAATGCCCATTCTTTCCCTAAGAGATTGAATATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547695" ref_strand="+" ref_description="SGN-E547695 [TUS-71-L9](-)">
      <seq>catgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatttttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtactaattgaagtaattataatttattatcaagagtgttcaatagtttcttatgggaatggaatgggaaaattatactataaatgcccattctttccctaagagattgaatatgtacataattaataatgatattaataaaatgatatttaatatttcttataaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18700" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18400" g_stop="17641" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="784"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E547695" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18400" e_stop="17641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT-ATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTC-TATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTAT</genome_strand>
        <mrna_strand>CATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAAT-TTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTACTAATTGAAGTAATTATAATTTATTATCAA-GAGTGTTCAATAGTTTCTTATGGGAATGGAATGGGAAAATTATACTATAAATGCCCATTCTTTCCCTAAGAGATTGAATATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362804" ref_strand="-" ref_description="SGN-E362804 [cLPP-2-G10]">
      <seq>catttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtactaattgaagtaattataatttattatcaagagtgttcaatagtttcttatgggaatggaatgggaaaattatactataaatgcccattctttccctaagagattgaatatgtacataattaataatgatattaataaaatgatatttaatatttattaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18612" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18312" g_stop="17643" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="694"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362804" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362804" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18312" e_stop="17643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT-ATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTC-TATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATT</genome_strand>
        <mrna_strand>CATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTACTAATTGAAGTAATTATAATTTATTATCAA-GAGTGTTCAATAGTTTCTTATGGGAATGGAATGGGAAAATTATACTATAAATGCCCATTCTTTCCCTAAGAGATTGAATATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223106" ref_strand="+" ref_description="SGN-E223106 [cLEL-14-O16](-)">
      <seq>ttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaagtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaggtgatatatatatgaagttatgaacaaattattttttactatatggtagatataatttgtgagatgtggattaggttgtataatatatagtttgtactattggagtaattataatttattatcaaggagtgtttaatagtctctatgggaatggaatgggaaaattgtaatataaatacccattatttccctaagagattgaacatgtacataattaataatgatattaataaaatgatatttaatatttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18361" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18061" g_stop="17646" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="439"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E223106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18061" e_stop="17646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTT</genome_strand>
        <mrna_strand>TTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223198" ref_strand="+" ref_description="SGN-E223198 [cLEL-14-O16](-)">
      <seq>tgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaagtaaaaccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaggtgatatatatatgaagttatgaacaaattattttttactatatggtagatataatttgtgagatgtggattaggttgtataatatatagtttgtactattggagtaattataatttattatcaaggagtgtttaatagtctctatgggaatggaatgggaaaattgtaatataaatacccattatttccctaagagattgaacatgtgcataattaataatgatattaataaaatgatatttaatatttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18357" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18057" g_stop="17646" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="413" polyA_stop="435"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E223198" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18057" e_stop="17646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTT</genome_strand>
        <mrna_strand>TGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTGCATAATTAATAATGATATTAATAAAATGATATTTAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363352" ref_strand="+" ref_description="SGN-E363352 [cLPP-4-D22]">
      <seq>ttaaatatcattttattaatatcattattaattatgtacatattcaatctcttagggaaagaatgggcatttatagtataattttcccattccattcccataagaaactattgaacactcttgataataaattataattacttcaattagtacaaactatatattatacaacttaatccacatctcacaaattatatttttaccatatagtaaaaaataatttgttcataacttcatatatatatattccttttcaccaccttagctttgctggaaaatatttctcaattaaagacatataataaggttttacctcttccacattaacatgaactttgcttttactatacaaatcatatttattaaaaacatgaagccacttcaaattttcttcatcttcatcattcattaaatgtttataagctccatttttatgcaatggataaaatgaatgataccttataataaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17351" stop="18421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17651" g_stop="18121" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E363352" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17651" e_stop="18121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATCATTTTATTAATATCATTATTAATTATGTACATGTTCAATCTCTTAGGGAAATAATGGGTATTTATATTACAATTTTCCCATTCCATTCCCAT-AGAGACTATTAAACACTCCTTGATAATAAATTATAATTACTCCAA-TAGTACAAACTATATATTATACAACCTAATCCACATCTCACAAATTATA--TCTACCATATAGTAAAAAATAATTTGTTCATAACTTCATATATATATCACCTCCTTTTCACCACCTTAGCTTTGCTGGAAAATATTTCTCAATTAAAGACATATAATAAGGTTTTACTTCTTCCACATTAACATGAACTTTGCTTTTACTATACAAATCATATTTATTAAAAACATGAAGCCACTTCAAATTTTCTTCATCTTCATCATTCATTAAATGTTTATAACCTCCATTTTTATGCAATGGATAAAATGAATGATACCTTATAATAAAAAG</genome_strand>
        <mrna_strand>TTAAATATCATTTTATTAATATCATTATTAATTATGTACATATTCAATCTCTTAGGGAAAGAATGGGCATTTATAGTATAATTTTCCCATTCCATTCCCATAAGAAACTATTGAACACT-CTTGATAATAAATTATAATTACTTCAATTAGTACAAACTATATATTATACAACTTAATCCACATCTCACAAATTATATTTTTACCATATAGTAAAAAATAATTTGTTCATAACTTCATATATATAT-A-TTCCTTTTCACCACCTTAGCTTTGCTGGAAAATATTTCTCAATTAAAGACATATAATAAGGTTTTACCTCTTCCACATTAACATGAACTTTGCTTTTACTATACAAATCATATTTATTAAAAACATGAAGCCACTTCAAATTTTCTTCATCTTCATCATTCATTAAATGTTTATAAGCTCCATTTTTATGCAATGGATAAAATGAATGATACCTTATAATAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361236" ref_strand="+" ref_description="SGN-E361236 [cLPP-15-G16]">
      <seq>atctcttanggtaagaatgggcgttgattgtataattttcccattccatccccataagaaactattgaacactcttgataataaattataattacttcaattagtacaaactatatattatacaacttaatccacatctcacaaattatatttttaccatattgtgaaaataatttgttcataacttcatatatatatattccttttcaccaccttagctttgctggaaaatatttctcaattaaagacatataataaggttttacctcttccacattaacatgaactttgcttttactatacaaatcatatttattaaaaacatgaagccacttcaaattttcttcatcttcatcattcattaaatgtttataagctccatttttatgcaaaggataaaatgaatgataccttataataaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="17397" stop="18422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17697" g_stop="18122" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E361236" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17697" e_stop="18122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTAGGGAAATAATGGGTATTTATATTACAATTTTCCCATTCCATTCCCAT-AGAGACTATTAAACACTCCTTGATAATAAATTATAATTACTCCAAT-AGTACAAACTATATATTATACAACCTAATCCACATCTCACAAATTATA--TCTACCATATAGTAAAAAATAATTTGTTCATAACTTCATATATATATCACCTCCTTTTCACCACCTTAGCTTTGCTGGAAAATATTTCTCAATTAAAGACATATAATAAGGTTTTACTTCTTCCACATTAACATGAACTTTGCTTTTACTATACAAATCATATTTATTAAAAACATGAAGCCACTTCAAATTTTCTTCATCTTCATCATTCATTAAATGTTTATAACCTCCATTTTTATGCAATGGATAAAATGAATGATACCTTATAATAAAAAGT</genome_strand>
        <mrna_strand>ATCTCTTANGGTAAGAATGGGCGTTGATTGTATAATTTTCCCATTCCATCCCCATAAGAAACTATTGAACACT-CTTGATAATAAATTATAATTACTTCAATTAGTACAAACTATATATTATACAACTTAATCCACATCTCACAAATTATATTTTTACCATATTGT-GAAAATAATTTGTTCATAACTTCATATATATAT-A-TTCCTTTTCACCACCTTAGCTTTGCTGGAAAATATTTCTCAATTAAAGACATATAATAAGGTTTTACCTCTTCCACATTAACATGAACTTTGCTTTTACTATACAAATCATATTTATTAAAAACATGAAGCCACTTCAAATTTTCTTCATCTTCATCATTCATTAAATGTTTATAAGCTCCATTTTTATGCAAAGGATAAAATGAATGATACCTTATAATAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547666" ref_strand="+" ref_description="SGN-E547666 [TUS-71-K16](-)">
      <seq>tagaaaagattatcttaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattccccataaatattttaaagaaaatcaagatttcaacaacccaatttataacccaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttttattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaacccttattatatgtctttaattgagaaatattttccagcaaagctaaggtggtgaaaaggaatatatatatatgaagttatgaacaaattattttttactatatggtaaaaatataatttgtgagatgtggattaagttgtataatatatagtttgtcctaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18749" stop="17497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18449" g_stop="17798" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="700"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E547666" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18449" e_stop="17798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGT--AGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACT</genome_strand>
        <mrna_strand>TAGAAAAGATTATCTTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCCCCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACCCAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAACCCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGA-AT-ATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAAAAATATAATTTGTGAGATGTGGATTAAGTTGTATAATATATAGTTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361137" ref_strand="+" ref_description="SGN-E361137 [cLPP-13-H9]">
      <seq>gaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattggactagaaaatgtcatgatgtcatggggtcatgatgattatatgtatatggttgctaaagaaaatggtacaacattaccatcagctggactttntattataaggtatcattcattttatccattgcataaaaatggagcttataaacatttaatgaatgatgaagatgaagaaaatttgaagtggcttcatgtttttaataaatatgatttgtatagtaaaagcaaagttcatgttaatgtggaagaggtaaaaccttattatatgtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18896" stop="17640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18596" g_stop="17940" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361137" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18596" e_stop="17940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTT</genome_strand>
        <mrna_strand>GAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTNTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAGGTAAAACCTTATTATATGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362454" ref_strand="+" ref_description="SGN-E362454 [cLPP-1-K22]">
      <seq>tttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacccaatttataacacaaaaaatggaatatataatgattttattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19027" stop="17909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18727" g_stop="18209" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362454" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18727" e_stop="18209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGA</genome_strand>
        <mrna_strand>TTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTTTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360267" ref_strand="+" ref_description="SGN-E360267 [cLPP-14-L22]">
      <seq>tttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaggatgtgcatttgatgaatcaaatattcaccataaatattttaaagaaaatcaagatttcaacaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19232" stop="17953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18932" g_stop="18253" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360267" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18932" e_stop="18253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACC</genome_strand>
        <mrna_strand>TTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCACCATAAATATTTTAAAGAAAATCAAGATTTCAACAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549451" ref_strand="+" ref_description="SGN-E549451 [TUS-70-I16]">
      <seq>aaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatagatagtgatccttgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttangatgtgcatttgatgaatcaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="17993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18999" g_stop="18293" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E549451" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18999" e_stop="18293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGAT-GATAGTGATCC-TGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATT</genome_strand>
        <mrna_strand>AAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATAGATAGTGATCCTTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTANGATGTGCATTTGATGAATCAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549593" ref_strand="+" ref_description="SGN-E549593 [TUS-71-N15]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggctgttgttggtgacacattccctttaagatgtgcatttgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18301" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E549593" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAAT</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAAGATGTGCATTTGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360251" ref_strand="+" ref_description="SGN-E360251 [cLPP-14-F20]">
      <seq>aacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19298" stop="18044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18997" g_stop="18344" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360251" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18997" e_stop="18344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCT</genome_strand>
        <mrna_strand>AACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547696" ref_strand="+" ref_description="SGN-E547696 [TUS-71-L9]">
      <seq>atttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttggatgatagtgatcctgatttggatgaacacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacctaagtttggtggtttacctcaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19286" stop="18045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18986" g_stop="18345" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E547696" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18986" e_stop="18345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTT-GATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGC</genome_strand>
        <mrna_strand>ATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGGATGATAGTGATCCTGATTTGGATGAA-CACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362618" ref_strand="+" ref_description="SGN-E362618 [cLPP-1-D2]">
      <seq>ttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatttaggtaaaatattagttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18372" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362618" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC---TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACC</genome_strand>
        <mrna_strand>TTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362546" ref_strand="+" ref_description="SGN-E362546 [cLPP-1-A12]">
      <seq>tttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatccttaaaattgaagatgttacattaacagccttaattcatgatttaggtaaaatattagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19274" stop="18074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18974" g_stop="18374" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362546" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18974" e_stop="18374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCC-TAATGAAG-ATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTA</genome_strand>
        <mrna_strand>TTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTTAAAATTGAAGATGTTACA-TTAACAGCCTTAATTCATGATTTAGGTAAAATATTAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363071" ref_strand="+" ref_description="SGN-E363071 [cLPP-2-J14]">
      <seq>aacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19298" stop="18093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18997" g_stop="18393" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363071" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18997" e_stop="18393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTT</genome_strand>
        <mrna_strand>AACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362655" ref_strand="+" ref_description="SGN-E362655 [cLPP-1-N8]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18394" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362655" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATT</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360284" ref_strand="+" ref_description="SGN-E360284 [cLPP-8-C1]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18395" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360284" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGAT</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362722" ref_strand="+" ref_description="SGN-E362722 [cLPP-1-N7]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18395" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362722" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGAT</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362553" ref_strand="+" ref_description="SGN-E362553 [cLPP-1-E10]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgagggcaattagaaaaaaagatatcctaatgaagattggtacatttaacagccttaattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18395" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362553" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGA-GGCAATTAG-AAAAGA-TTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGAT</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGGCAATTAGAAAAAAAGATATCCTAATGAAGATTGG-TACATTTAACAGCCTTAATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364477" ref_strand="+" ref_description="SGN-E364477 [cLPP-18-A6]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaaaaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18400" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364477" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC--TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTC</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAAACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374074" ref_strand="+" ref_description="SGN-E374074 [TUS-33-O11]">
      <seq>agaactatcccatcaaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaagattggttacatttaacagccttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19312" stop="18102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19014" g_stop="18402" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E374074" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19014" e_stop="18402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTATCCCATCAAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAAT</genome_strand>
        <mrna_strand>AGAACTATCCCATCAAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360092" ref_strand="+" ref_description="SGN-E360092 [cLPP-14-O17]">
      <seq>ccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19237" stop="18126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18937" g_stop="18426" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360092" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18937" e_stop="18426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGA</genome_strand>
        <mrna_strand>CCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361245" ref_strand="+" ref_description="SGN-E361245 [cLPP-15-B13]">
      <seq>accaatttatggtgcggggggaacaaatgcatttggacatgattttaaggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19013" stop="18129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18732" g_stop="18429" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361245" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18732" e_stop="18429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATTTATGGTGC--CTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGA</genome_strand>
        <mrna_strand>ACCAATTTATGGTGCGGGGGGAACAAATGCATTTGGACATGATTTTAAGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360238" ref_strand="+" ref_description="SGN-E360238 [cLPP-14-O16]">
      <seq>attatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaagattatcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18431" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360238" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAAT</genome_strand>
        <mrna_strand>ATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360984" ref_strand="+" ref_description="SGN-E360984 [cLPP-13-N13]">
      <seq>ttattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggcaattagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19291" stop="18142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18991" g_stop="18442" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360984" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18991" e_stop="18442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAG</genome_strand>
        <mrna_strand>TTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGC-TTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362569" ref_strand="+" ref_description="SGN-E362569 [cLPP-1-K16]">
      <seq>ttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctgaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18455" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362569" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAG</genome_strand>
        <mrna_strand>TTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361045" ref_strand="+" ref_description="SGN-E361045 [cLPP-13-C15]">
      <seq>aattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19293" stop="18157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="18457" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361045" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="18457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</genome_strand>
        <mrna_strand>AATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362323" ref_strand="+" ref_description="SGN-E362323 [cLPP-10-L14]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18457" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362323" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360981" ref_strand="+" ref_description="SGN-E360981 [cLPP-13-L15]">
      <seq>ttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18457" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360981" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</genome_strand>
        <mrna_strand>TTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360259" ref_strand="+" ref_description="SGN-E360259 [cLPP-14-H24]">
      <seq>atttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccacctagagggaaaaaaagtccatgaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtggaaaaattcttcaagacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttcgtgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19286" stop="18161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18986" g_stop="18461" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360259" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18986" e_stop="18461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGT</genome_strand>
        <mrna_strand>ATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCACCTAGAGGGAAAAAAAGTCCATGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTGGAAAAATTCTTCAAGACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTCGTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363368" ref_strand="+" ref_description="SGN-E363368 [cLPP-4-J6]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18462" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363368" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAG</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364384" ref_strand="+" ref_description="SGN-E364384 [cLPP-20-A20]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaagggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18466" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364384" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAA-GGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTAC</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361843" ref_strand="+" ref_description="SGN-E361843 [cLPP-12-J13]">
      <seq>tcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19279" stop="18166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18979" g_stop="18466" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361843" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18979" e_stop="18466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTAC</genome_strand>
        <mrna_strand>TCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360991" ref_strand="+" ref_description="SGN-E360991 [cLPP-13-P17]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18467" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360991" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTA</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359887" ref_strand="+" ref_description="SGN-E359887 [cLPP-9-P9]">
      <seq>tttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19227" stop="18169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18927" g_stop="18469" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359887" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18927" e_stop="18469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTAT</genome_strand>
        <mrna_strand>TTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363850" ref_strand="+" ref_description="SGN-E363850 [cLPP-3-P8]">
      <seq>tttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19283" stop="18172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18983" g_stop="18472" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363850" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18983" e_stop="18472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATT</genome_strand>
        <mrna_strand>TTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363942" ref_strand="+" ref_description="SGN-E363942 [cLPP-16-G19]">
      <seq>ttattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccacaaattcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19291" stop="18174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18991" g_stop="18474" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363942" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18991" e_stop="18474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC--TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACA</genome_strand>
        <mrna_strand>TTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCACAAATTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365134" ref_strand="+" ref_description="SGN-E365134 [cLPP-17-K4]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgaacatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18484" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E365134" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCAC</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAACATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360563" ref_strand="+" ref_description="SGN-E360563 [cLPP-8-H12]">
      <seq>actatctcaattatcctatcctaacctatcctatccatctttgctttgctctaattactttcaattattctcaaattggagatctgtgtcctttgttgtagttctatacgtaacaatatcgtgtgtaacaatgaaagaccagttgacaattaaagccaggccttccagatcatgccgcttttgtttgttaatcatgaacaaagactatccaactagagggaaaaaaagtccacgaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacgacaatgcacaaagtgaaaggcaaaaaggggtcgaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcacaaatgagcatatgggaatgttgtgaattattaaatgatgttggtgatgatagtgatcctgatttggatgaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19271" stop="18185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18971" g_stop="18485" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360563" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18971" e_stop="18485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTT-TTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCA</genome_strand>
        <mrna_strand>ACTATCTCAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTCTAATTACTTTCAATTATTCTCAAATTGGAGATCTGTGTCCTTTGTTGTAGTTCTATACGTAACAATATCGTGTGTAACAATGAAAGACCAGTTGACAATTAAAGCCAGGCCTTCCAGATCATGCCGCTTTTGTTTGTTAATCATGAACAAAGACTATCCAACTAGAGGGAAAAAAAGTCCACGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACGACAATGCACAAAGTGAAAGGCAAAAAGGGGTCGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCACAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGGTGATGATAGTGATCCTGATTTGGATGAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360575" ref_strand="+" ref_description="SGN-E360575 [cLPP-8-N14]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacattaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18488" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360575" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC--TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAA</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATTAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360094" ref_strand="+" ref_description="SGN-E360094 [cLPP-14-A4]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18489" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360094" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGA</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360938" ref_strand="+" ref_description="SGN-E360938 [cLPP-13-G16]">
      <seq>atcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19280" stop="18189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18980" g_stop="18489" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360938" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18980" e_stop="18489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGA</genome_strand>
        <mrna_strand>ATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359603" ref_strand="+" ref_description="SGN-E359603 [cLPP-5-O4]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18490" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359603" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATG</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363373" ref_strand="+" ref_description="SGN-E363373 [cLPP-4-L8]">
      <seq>aaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19299" stop="18190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18998" g_stop="18490" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363373" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18998" e_stop="18490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATG</genome_strand>
        <mrna_strand>AAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362734" ref_strand="+" ref_description="SGN-E362734 [cLPP-1-F18]">
      <seq>caaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19295" stop="18190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18995" g_stop="18490" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18995" e_stop="18490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATG</genome_strand>
        <mrna_strand>CAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360168" ref_strand="+" ref_description="SGN-E360168 [cLPP-14-A23]">
      <seq>tgtatctcatttaccatctcaatcatcctatcctaacgtgtcctcctcatctttgctttagctcaattactttcaattattctcaaatttgagatttgtgttctttgttgtagctctattcgtaacaatatcgagagtaaaaattaaagtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtcgaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgtcgctgatgatagtgatcctgattcggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19238" stop="18190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18983" g_stop="18490" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360168" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18983" e_stop="18490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATG</genome_strand>
        <mrna_strand>TGTATCTCATTTACCATCTCAATCATCCTATCCTAACGTGTCCTCCTCATCTTTGCTTTAGCTCAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGCTCTATTCGTAACAATATCGAGAGTAAAAATTAAAGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTCGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTCGCTGATGATAGTGATCCTGATTCGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365153" ref_strand="+" ref_description="SGN-E365153 [cLPP-17-D7]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaantgnnaaaagattacgtaaaatgtgacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctggtttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18491" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E365153" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGAT</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAANTGNNAAAAGATTACGTAAAATGTGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGGTTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363446" ref_strand="+" ref_description="SGN-E363446 [cLPP-4-K6]">
      <seq>tatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctgatttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19281" stop="18191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18981" g_stop="18491" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363446" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18981" e_stop="18491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGAT</genome_strand>
        <mrna_strand>TATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364311" ref_strand="+" ref_description="SGN-E364311 [cLPP-20-B22]">
      <seq>aaaaacaaattattatttttatcggatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggttgaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18498" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364311" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGA</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCGGATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTTGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363955" ref_strand="+" ref_description="SGN-E363955 [cLPP-16-O15]">
      <seq>aaacaaatggggatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaaagcaaaatgagcatatgggaatgttgggaattattaaatgatgttgttgatgatagtgatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19286" stop="18198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18998" g_stop="18498" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363955" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18998" e_stop="18498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGA</genome_strand>
        <mrna_strand>AAACAAATGGGGATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAAGCAAAATGAGCATATGGGAATGTTGGGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360851" ref_strand="+" ref_description="SGN-E360851 [cLPP-7-H22]">
      <seq>aacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatngtgttgatgatagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19298" stop="18202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18997" g_stop="18502" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360851" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18997" e_stop="18502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATC</genome_strand>
        <mrna_strand>AACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATNGTGTTGATGATAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362188" ref_strand="+" ref_description="SGN-E362188 [cLPP-11-P5]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatgatagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18502" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362188" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATC</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363502" ref_strand="+" ref_description="SGN-E363502 [cLPP-4-L21]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttgttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18510" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363502" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGA</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362222" ref_strand="+" ref_description="SGN-E362222 [cLPP-11-N12]">
      <seq>ttattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19291" stop="18217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18991" g_stop="18517" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362222" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18991" e_stop="18517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTG</genome_strand>
        <mrna_strand>TTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362357" ref_strand="+" ref_description="SGN-E362357 [cLPP-10-O16]">
      <seq>caaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19295" stop="18220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18995" g_stop="18520" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362357" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18995" e_stop="18520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</genome_strand>
        <mrna_strand>CAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359712" ref_strand="+" ref_description="SGN-E359712 [cLPP-5-E10]">
      <seq>aattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19293" stop="18220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="18520" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359712" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="18520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</genome_strand>
        <mrna_strand>AATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363475" ref_strand="+" ref_description="SGN-E363475 [cLPP-4-D21]">
      <seq>ttattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19291" stop="18220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18991" g_stop="18520" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363475" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18991" e_stop="18520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</genome_strand>
        <mrna_strand>TTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361969" ref_strand="+" ref_description="SGN-E361969 [cLPP-11-I16]">
      <seq>attatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18522" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361969" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGA</genome_strand>
        <mrna_strand>ATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361728" ref_strand="+" ref_description="SGN-E361728 [cLPP-12-H10]">
      <seq>attatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18523" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361728" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATG</genome_strand>
        <mrna_strand>ATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361762" ref_strand="+" ref_description="SGN-E361762 [cLPP-12-C21]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctaccaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacattaaattagacaaagcaaaaatgagcatatgggaatgttgtgaattattaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18523" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361762" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATG</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACCAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATTAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363689" ref_strand="+" ref_description="SGN-E363689 [cLPP-3-L14]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatgttgtgaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18530" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363689" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC--TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTA</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363537" ref_strand="+" ref_description="SGN-E363537 [cLPP-4-J14]">
      <seq>attattattatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgagttctttgtcgtagttctatttgtaacaatatcgtgagttacaattaaagtcccgttgacaatttaagccaggccttccaaatcattccgcttcttttttttaatcattaaaaatgactattcaactatagggaaaaaaggcccaccaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttaaggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattctgtgaagaaaatgagagaagattacataaacttacacgaagcgaaaatgagcatatcggaatgttgtgaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18530" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363537" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTT-TTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTA</genome_strand>
        <mrna_strand>ATTATTATTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGAGTTCTTTGTCGTAGTTCTATTTGTAACAATATCGTGAGTTACAATTAAAGTCCCGTTGACAATTTAAGCCAGGCCTTCCAAATCATTCCGCTTCTTTTTTTTAATCATTAAAAATGACTATTCAACTATAGGGAAAAAAGGCCCACCACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAAGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTCTGTGAAGAAAATGAGAGAAGATTACATAAACTTACACGAAGCGAAAATGAGCATATCGGAATGTTGTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361533" ref_strand="+" ref_description="SGN-E361533 [cLPP-6-M20]">
      <seq>aaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagatctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacagaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19299" stop="18240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18998" g_stop="18540" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361533" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18998" e_stop="18540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATG</genome_strand>
        <mrna_strand>AAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGATCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAGAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364358" ref_strand="+" ref_description="SGN-E364358 [cLPP-20-C15]">
      <seq>ttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19282" stop="18240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18982" g_stop="18540" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364358" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18982" e_stop="18540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATG</genome_strand>
        <mrna_strand>TTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360368" ref_strand="+" ref_description="SGN-E360368 [cLPP-8-H19]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaagcaaaaaggggtagaaaaattctacaaaacacaacatattaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaatttgacaaagcgaaaatgagcatatgggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18541" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360368" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAAT</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAAGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATTAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTTGACAAAGCGAAAATGAGCATATGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362261" ref_strand="+" ref_description="SGN-E362261 [cLPP-10-K22]">
      <seq>ttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18541" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362261" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAAT</genome_strand>
        <mrna_strand>TTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360933" ref_strand="+" ref_description="SGN-E360933 [cLPP-13-E14]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaagcaaaaatgagcatatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18542" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360933" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAA</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363974" ref_strand="+" ref_description="SGN-E363974 [cLPP-16-E8]">
      <seq>acaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaattagacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19295" stop="18262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18996" g_stop="18562" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363974" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18996" e_stop="18562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAG</genome_strand>
        <mrna_strand>ACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361589" ref_strand="+" ref_description="SGN-E361589 [cLPP-6-D12]">
      <seq>ttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagattacataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19265" stop="18272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18965" g_stop="18572" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361589" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18965" e_stop="18572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAA</genome_strand>
        <mrna_strand>TTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363416" ref_strand="+" ref_description="SGN-E363416 [cLPP-4-O19]">
      <seq>ggttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18986" g_stop="18579" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363416" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18986" e_stop="18579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTA</genome_strand>
        <mrna_strand>GGTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362165" ref_strand="+" ref_description="SGN-E362165 [cLPP-11-H23]">
      <seq>aactagtctcgagttttttttttttttttttttttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100644" stop="18281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19260" g_stop="19247" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19246" i_stop="18993" i_length="254">
            <donor d_prob="0.818" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18992" g_stop="18581" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="427" r_length="413" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362165" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19260" e_stop="19247"/>
          <exon e_start="18992" e_stop="18581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATTTACATGGGCAAATCCACATTATCCCCAAACCTCAAACTATATTTTGTTCTTATCCTCTAGTATAATTTAGTATCCAAACTAAACATTTGTCAAGTTGATAATAATAAGCATAAATAAAAATAGAATTATTATAACAAAAGAAAAAATGGGAGGTGAAAATAATATCTAGTTAGAGATTTTTAAGGAATGACTTTAATTACCAACACTTATAAATACTTGAAATTTTTATATTTTTTTACCCAAGTATCCCATCAAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGAT</genome_strand>
        <mrna_strand>AACTAGTCTCGAGT..............................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362166" ref_strand="+" ref_description="SGN-E362166 [cLPP-11-J3]">
      <seq>attatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatattaatcaaacctatgattttgtgaagaaaatgagagaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18581" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362166" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGAT</genome_strand>
        <mrna_strand>ATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATTAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362911" ref_strand="+" ref_description="SGN-E362911 [cLPP-2-P22]">
      <seq>agaactatcccatcaaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19312" stop="18282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19014" g_stop="18582" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362911" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19014" e_stop="18582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTATCCCATCAAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGA</genome_strand>
        <mrna_strand>AGAACTATCCCATCAAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360764" ref_strand="+" ref_description="SGN-E360764 [cLPP-7-O7]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18583" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360764" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359682" ref_strand="+" ref_description="SGN-E359682 [cLPP-5-G21]">
      <seq>gtgccgaattcggcacgaggaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19293" stop="18283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="18583" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="432" r_length="412" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359682" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="18583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</genome_strand>
        <mrna_strand>AATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362123" ref_strand="+" ref_description="SGN-E362123 [cLPP-11-K4]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18583" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362123" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360628" ref_strand="+" ref_description="SGN-E360628 [cLPP-7-K22]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18585" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360628" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGA</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363404" ref_strand="+" ref_description="SGN-E363404 [cLPP-4-I11]">
      <seq>tattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttatggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19290" stop="18286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18990" g_stop="18586" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363404" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18990" e_stop="18586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAG</genome_strand>
        <mrna_strand>TATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTATGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364977" ref_strand="+" ref_description="SGN-E364977 [cLPP-17-M14]">
      <seq>attatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgcttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctacaaaacacaacatataaatcaaacctatgattttgtgaagaaaatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19289" stop="18286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18989" g_stop="18586" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364977" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18989" e_stop="18586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAG</genome_strand>
        <mrna_strand>ATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364260" ref_strand="+" ref_description="SGN-E364260 [cLPP-20-I23]">
      <seq>aaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctgttttttttttatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaaaaaggggtagaaaaattctcaaaacacaacatataaatcaaacctatgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19294" stop="18302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18994" g_stop="18602" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E364260" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18994" e_stop="18602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACT-TTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTT</genome_strand>
        <mrna_strand>AAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTGTTTTTTTTTTATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCT-CAAAACACAACATATAAATCAAACCTATGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361639" ref_strand="+" ref_description="SGN-E361639 [cLPP-12-A6]">
      <seq>aacaaatgattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagatctatttgtaacaatatcgtgagtaaaaactaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtgcaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaatgcaaaaaggggtagaaaaattctacaaaacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19298" stop="18325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18997" g_stop="18625" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361639" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18997" e_stop="18625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAAC</genome_strand>
        <mrna_strand>AACAAATGATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGATCTATTTGTAACAATATCGTGAGTAAAAACTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTGCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAATGCAAAAAGGGGTAGAAAAATTCTACAAAACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363225" ref_strand="+" ref_description="SGN-E363225 [cLPP-19-D16]">
      <seq>aattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccatgccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19293" stop="18356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="18656" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363225" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="18656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAA</genome_strand>
        <mrna_strand>AATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCATGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363121" ref_strand="+" ref_description="SGN-E363121 [cLPP-19-E14]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagtgaaaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18657" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363121" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCA</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359655" ref_strand="+" ref_description="SGN-E359655 [cLPP-5-P12]">
      <seq>aaaaacaaattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagacccagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19300" stop="18365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19000" g_stop="18665" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359655" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19000" e_stop="18665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGT</genome_strand>
        <mrna_strand>AAAAACAAATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCCAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361670" ref_strand="+" ref_description="SGN-E361670 [cLPP-12-M20]">
      <seq>tttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19285" stop="18366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18666" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361670" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAG</genome_strand>
        <mrna_strand>TTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360719" ref_strand="+" ref_description="SGN-E360719 [cLPP-7-A3]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18668" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360719" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAA</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359793" ref_strand="+" ref_description="SGN-E359793 [cLPP-9-A11]">
      <seq>tcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgattttagggactacaacaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19279" stop="18369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18979" g_stop="18669" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E359793" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18979" e_stop="18669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACA</genome_strand>
        <mrna_strand>TCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363230" ref_strand="+" ref_description="SGN-E363230 [cLPP-19-F18]">
      <seq>aattattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatcctactagagggaaaaaaagtccaagaccaagacccatttatggtgccttaaacaaatgcatttggacatgattttaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19293" stop="18385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18993" g_stop="18685" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363230" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18993" e_stop="18685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGG</genome_strand>
        <mrna_strand>AATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCTACTAGAGGGAAAAAAAGTCCAAGACCAAGACCCATTTATGGTGCCTTAAACAAATGCATTTGGACATGATTTTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361957" ref_strand="+" ref_description="SGN-E361957 [cLPP-11-C18]">
      <seq>ttatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatgatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19288" stop="18388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18988" g_stop="18688" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E361957" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18988" e_stop="18688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTA</genome_strand>
        <mrna_strand>TTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363276" ref_strand="+" ref_description="SGN-E363276 [cLPP-4-O9]">
      <seq>gagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatgattcaaaatgactatccaactagagggaaaaaaagtccaagaccaagaccaatttatggtgcctcaaacaaatgcatttggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19149" stop="18394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18849" g_stop="18694" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E363276" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>156</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18849" e_stop="18694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATG</genome_strand>
        <mrna_strand>GAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATGATTCAAAATGACTATCCAACTAGAGGGAAAAAAAGTCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360730" ref_strand="+" ref_description="SGN-E360730 [cLPP-7-E1]">
      <seq>attattatttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagtaaaaattaaggtccagttgacaatttaagccaggccttccagatcattccgctttttttttttaatcattaaaaatgactatccaactagagggaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19292" stop="18446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18992" g_stop="18746" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E360730" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18992" e_stop="18746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCAC-TTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAA</genome_strand>
        <mrna_strand>ATTATTATTTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCAGATCATTCCGCTTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362268" ref_strand="+" ref_description="SGN-E362268 [cLPP-10-M22]">
      <seq>ttttatcttatttactatcttaattatcctatcctaacctatcctatccatctttgctttgctttaattactttcaattattctcaaatttgagatttgtgttctttgttgtagttctatttgtaacaatatcgtgagttaaaattaaggtccagttgacaatttaagccaggccttccatatcattccgctttgtttttttaatcattaaaaacgactatccaactggaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19284" stop="18452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18752" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E362268" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTT-TTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGA</genome_strand>
        <mrna_strand>TTTTATCTTATTTACTATCTTAATTATCCTATCCTAACCTATCCTATCCATCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATTTGTAACAATATCGTGAGTTAAAATTAAGGTCCAGTTGACAATTTAAGCCAGGCCTTCCATATCATTCCGCTTTGTTTTTTTAATCATTAAAAACGACTATCCAACTGGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357795" ref_strand="+" ref_description="SGN-E357795 [cTOS-24-I17]">
      <seq>cgaagttgtgtcaatgttgatggagtctgatgagcaagaaggtaacttcatcttgtctcaaagttgatctccctatgacagaaacataatgtattatgttatgttgctcggactcttcaaaaatgttacatcacccgtgtccgattcgcaaaacatgtactagttttgaagtattcaacatgcatctggtggcattcttgaagagttcgaacaacataagttaaatatataaatagcgcgaagactgatatgctttctagtattagctcttgtattgtattctacagttgaataatagaattaccacatgtttctcaaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26546" stop="25616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26246" g_stop="25914" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E357795" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26246" e_stop="25914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTGTGTCAATGTTGATGGAGTCTGATGAGCAAGAAGGTAACTTCATCTTGTCTCAAAGTTGATCTCCCTATGACAGAAACATAATGTATTATGTTATGTTGCTCGGACTCTTCAAAAATGTTACATCACCCGTGTCCGATTCGCAAAACATGTACTAGTTTTGAAGTATTCAACATGCATCTGGTGGCATTCTTGAAGAGTTCGAACAACATAAGTTAAATATATAAATAGCGCGAAGACTGATATGCTTTCTAGTATTAGCTCTTGTATTGTATTCTACAGTTGAATAATAGAATTACCACATGTTTCTCAAAATGTAAATAATATC</genome_strand>
        <mrna_strand>CGAAGTTGTGTCAATGTTGATGGAGTCTGATGAGCAAGAAGGTAACTTCATCTTGTCTCAAAGTTGATCTCCCTATGACAGAAACATAATGTATTATGTTATGTTGCTCGGACTCTTCAAAAATGTTACATCACCCGTGTCCGATTCGCAAAACATGTACTAGTTTTGAAGTATTCAACATGCATCTGGTGGCATTCTTGAAGAGTTCGAACAACATAAGTTAAATATATAAATAGCGCGAAGACTGATATGCTTTCTAGTATTAGCTCTTGTATTGTATTCTACAGTTGAATAATAGAATTACCACATGTTTCTCAAAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357808" ref_strand="+" ref_description="SGN-E357808 [cTOS-24-A2]">
      <seq>cgaagttgtgtcaatgttgatggagtctgatgagcaagaaggtaacttcatcttgtctcaaagttgatctccctatgacagaaacataatgtattatgttatgttgctcggactcttcaaaaatgttacatcacccgtgtccgattcgcaaaacatgtactagttttgaagtattcaacatgcatctggtggcattcttgaagagttcgaacaacataagttaaatatataaatagcgcgaagactgatatgctttctagtattagctcttgtattgtattctacagttgaataatagaattaccacatgtttctcaaaatgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26546" stop="25616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26246" g_stop="25914" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E357808" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26246" e_stop="25914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTGTGTCAATGTTGATGGAGTCTGATGAGCAAGAAGGTAACTTCATCTTGTCTCAAAGTTGATCTCCCTATGACAGAAACATAATGTATTATGTTATGTTGCTCGGACTCTTCAAAAATGTTACATCACCCGTGTCCGATTCGCAAAACATGTACTAGTTTTGAAGTATTCAACATGCATCTGGTGGCATTCTTGAAGAGTTCGAACAACATAAGTTAAATATATAAATAGCGCGAAGACTGATATGCTTTCTAGTATTAGCTCTTGTATTGTATTCTACAGTTGAATAATAGAATTACCACATGTTTCTCAAAATGTAAATAATATC</genome_strand>
        <mrna_strand>CGAAGTTGTGTCAATGTTGATGGAGTCTGATGAGCAAGAAGGTAACTTCATCTTGTCTCAAAGTTGATCTCCCTATGACAGAAACATAATGTATTATGTTATGTTGCTCGGACTCTTCAAAAATGTTACATCACCCGTGTCCGATTCGCAAAACATGTACTAGTTTTGAAGTATTCAACATGCATCTGGTGGCATTCTTGAAGAGTTCGAACAACATAAGTTAAATATATAAATAGCGCGAAGACTGATATGCTTTCTAGTATTAGCTCTTGTATTGTATTCTACAGTTGAATAATAGAATTACCACATGTTTCTCAAAATGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50398" stop="51738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50698" g_stop="51438" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50698" e_stop="51438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACGGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGACCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50462" stop="51792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50757" g_stop="51492" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50757" e_stop="51492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACGGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGACCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCATGACGAGCACAAAGGAAAGTTCGCACCGAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50462" stop="51752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50757" g_stop="51452" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50757" e_stop="51452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACGGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGACCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50462" stop="51751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50757" g_stop="51451" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50757" e_stop="51451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACGGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGACCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319002" ref_strand="+" ref_description="SGN-E319002 [cTOB-14-H24]">
      <seq>ttcttttggtgttttttctctaaaagcatgcctactgaacaattcaagtgcttcaacctcggataatagttggacttcatacacgttatccccgacgtgactgatcaacaggttcttgtctcttgatttaaaataattctgctacccattccaaaccactctgtccctccaactaaaaattccaactgttctcgatggtttacatcatcgagaatgaacaaaactttcttccagcgaagcctattctttaaaataatcatcccttcatgttcactagttacactcatcttttcacccaagagcttgcgaatgacgacttgtgccagccatgcttgtccatttttctggtgaagttctccaacatcaccaagaaaacaatcagcttcaaatagatggcggtatctttcatacagaacacgtgcaagttctgatttgccgatgccacccataccactaataccaatagagcgagcatcatttgattccatacttaataattcgattacttcctcaacctgagatctcatacccactaagctttccggaaaaggtgaaataatttgaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60949" stop="62118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61249" g_stop="61818" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E319002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61249" e_stop="61818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGGTGTTTTTTCTCTAAAAGCATGCCTACTGAACAATTCAAGTGCTTCAACCTCGGATAATAGTTGGACTTCATACACGTTATCCCCGACGTGACTGATCAACAGGTTCTTGTCTCTTGATTTAAAATAATTCTGCTACCCATTCCAAACCACTCTGTCCCTCCAACTAAAAATTCCAACTGTTCTCGATGGTTTACATCATCGAGAATGAACAAAACTTTCTTCCAGCGAAGCCTATTCTTTAAAATAATCATCCCTTCATGTTCACTAGTTACACTCATCTTTTCACCCAAGAGCTTGCGAATGACGACTTGTGCCAGCCATGCTTGTCCATTTTTCTGGTGAAGTTCTCCAACATCACCAAGAAAACAATCAGCTTCAAATAGATGGCGGTATCTTTCATACAGAACACGTGCAAGTTCTGATTTGCCGATGCCACCCATACCACTAATACCAATAGAGCGAGCATCATTTGATTCCATACTTAATAATTCGATTACTTCCTCAACCTGAGATCTCATACCCACTAAGCTTTCCGGAAAAGGTGAAATAATTTGAAGTGAC</genome_strand>
        <mrna_strand>TTCTTTTGGTGTTTTTTCTCTAAAAGCATGCCTACTGAACAATTCAAGTGCTTCAACCTCGGATAATAGTTGGACTTCATACACGTTATCCCCGACGTGACTGATCAACAGGTTCTTGTCTCTTGATTTAAAATAATTCTGCTACCCATTCCAAACCACTCTGTCCCTCCAACTAAAAATTCCAACTGTTCTCGATGGTTTACATCATCGAGAATGAACAAAACTTTCTTCCAGCGAAGCCTATTCTTTAAAATAATCATCCCTTCATGTTCACTAGTTACACTCATCTTTTCACCCAAGAGCTTGCGAATGACGACTTGTGCCAGCCATGCTTGTCCATTTTTCTGGTGAAGTTCTCCAACATCACCAAGAAAACAATCAGCTTCAAATAGATGGCGGTATCTTTCATACAGAACACGTGCAAGTTCTGATTTGCCGATGCCACCCATACCACTAATACCAATAGAGCGAGCATCATTTGATTCCATACTTAATAATTCGATTACTTCCTCAACCTGAGATCTCATACCCACTAAGCTTTCCGGAAAAGGTGAAATAATTTGAAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299979" ref_strand="+" ref_description="SGN-E299979 [cLEW-11-G18]">
      <seq>gtggctgaaatttggctaccgactgaaatcgtttcgtttcatttctgagctagcaatggaagctctactgggaagttcgaattctccttcattcaccatcatcagaagaaaccccattacttcttttaaggtgctttcatggaattctttgtacagcggaagtaataaatctcgagtatatcatcctatattgtgtctgaaaagaagtggcaatgacaactctggaagttgctctccttcatgctacattgagcaaatgtaaagaaacagaatgttttctcagccaatccggaggtgtagaaaaatattcatagataagcaaagtttgctggttatacaaaatggcttagcttttataccaagaaaattcaaatccagtctccgcaaaacattaaagcattctgaactttgtaagagtatagtacctgagatatttgttcggtcctgcataggactaatgctggttatggctgtcaatgctgctgttgtcaaagcgccttcttttgctctcactgaagaaaatctacttttcttggaggcatggagaacaattgaccgtgcatatattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63330" stop="66586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63630" g_stop="63759" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63760" i_stop="65743" i_length="1984">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65744" g_stop="66116" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="503" r_length="373" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66117" i_stop="66219" i_length="103">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66220" g_stop="66286" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="570" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E299979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63630" e_stop="63759"/>
          <exon e_start="65744" e_stop="66116"/>
          <exon e_start="66220" e_stop="66286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTGAAATTTGGCTACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAGGTATGTGAAAAAATGGGAAAGTTTAGTTTTTTATGGTTTTTGAAATAACCCCATTTGGTCAAGTGGGCAAATTCCATTTCATATTACTAGTTGTTGTTTTAGTTGGTGTTCTTGATTTCATTAATTTCTCGATGTTTCAATTTATGTGATTGTGTTTGACTGGAAATTGAGATTGAAATAGTTCTAATTTGATTTTTGTGTAGTATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAGGTATGTGAAAATTGGAAATTTTGAAGTTTTTTTTTATGGTTCTTGAAATAACCCCATTTGTTCAAGTGGACAAATTCCCTAATATTTCATATTTACTATTTGTTATTTTAGTTGGTGTTCTTGATTTCATAAGTTTCCTGATGGTTCAATTTATGTGACGGTGTTTGACTGGAGTTTGAAATAGTACTAATATGGTATTGTGTAGTATGAATGGTAGTAGAATTCAACAACAAGAACATATCTAGTGTAGTCTATGGGGAGGGTAGAGTGTACGTAGACTTTACCCCTACCTAGTGACGGAGTTGCAATTTTCATCAAGGGGTTCACCATCTACTTTATATATATAAAAGATAATTTTAACCATGTAATAAACAGTATGATTCTCCATAAAAGGGGGTTCGGATGAAGCCCTTGATCCTACTTGGCTCCGTACCTTGTCCCTACCTCAGGGGTAGAGAGGTTGTTTCCGATAAACCCTTGTCTCAAGATGAATAGTAGTAGAAGAAGATATTAATTAGCTTAGATAGTTTTAGTTTGCTTAGAAAAGTATTGAAGTGTAAAATAAGTTTAGGACAGGAGAAAATATAGTGATTTCTGTACATCTGCCTAACTCTGGAGGAATAATGAAGATTTGCACTAGCTGGCCTGGATTAAATAATTTTAATGACTGAATTGTGTGTACTATTTTTGAATTCTTGAAAGGGAAAGAGTGTAGTATAGATTAAAAGTTTAAAACTAGAAGAGTTCATTATTTAAGCAGTCTGTTTTCTCAATTGTGAAACATGGAAATCCTTGTTTAAACTTATATAGTAAACAAGTACTTATGTATTTTAAAGTTTTCACAGAGCCAGTAATTCGAGTTAAGATTGAAACTTTACATTGTTTTTCATTTGATGATAATCTCACGATATTTAGTGTGTCAAATGAAAGAAAAGGTAGAAATTGAAAGATCCGAACATTATTTGAGAGGCTTGAATCAGAGAGGTAAAAAATTGACTCCTTCGTTCAGTCATATGAGTCAGCCCCAAACTAGTTGGTGCAGGCAACATGGTTCCGCTATATCCTTTCCACTCTATTCATGCTATTTCATTGCAGTACTGGTACATAATTGGTCTTTTAAGACCAAAAAGCATATACTTTTAAACATTATGATTTAATTAAAGGGGGAAGGTCCAAATTTATCCCTGTACTATTTAAATCACTCAATGTTGCCTCTGTCACACTTTTGGTTCATTCATATTCTTGTTGTTAACAAATCACCACGTAGTTTTCCTTTTTGTTAATGGAACTCCAGCGTAAAATTGGTGGACTCTACGTGTCCAAATTTTTGAGAAAAAATGTCCAAATTTATCCATCAACCTTACTTTGGAGCTTCATTAGTACGGGTCAAGGGTAAAAATAAGACTGCTTCACAGCGGAGGGGGTAAAATAGACCAAAAGTTTATAGAGGCAAAAGTTGCTCAATTTTAGATAGTAATCGGGAAAATTTAACCTTTTCCCTTTAGTTAATTTTAAAGGAGCTGGAAGGCAAAGAAATGATCATGAGGAATTATTCTTGCTTGTATGTGGTGGACCATCTAGAAGGAACAAAATTAACATGTTCGTTCTGTAAACAAGAAGTAAAGCATCTCCAAACTAAAAGCTACTCGTCTTTCTCTTTGTCTTTGTGTTTTTGGTGCAAAAGTGCAAAATTTACACGATATAGATAGTCAAGTAGACTTAATCAATAAACATTCTGCAGGTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGTATAGTACCTGAGATATTTGTTCGGTCCTGCATAGGACTAATGCTGGTTATGGCTGTCAATGCTGCTGTTGTCAAAGCGCCTTCTTGTAAGTCTGTCAGTTTGATGGATCATGTCAAGCTTTTCCATGTTGTAAGACTCAATTATTCAAATATAAGTAATGAAATTCCTATTTTCTTCCCATTTTACAGTTGCTCTCACTGAAGAAAATCTACTTTTCTTGGAGGCATGGAGAACAATTGACCGTGCATATATTGA</genome_strand>
        <mrna_strand>GTGGCTGAAATTTGGCTACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTAAAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGTATAGTACCTGAGATATTTGTTCGGTCCTGCATAGGACTAATGCTGGTTATGGCTGTCAATGCTGCTGTTGTCAAAGCGCCTTCTT.......................................................................................................TTGCTCTCACTGAAGAAAATCTACTTTTCTTGGAGGCATGGAGAACAATTGACCGTGCATATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322697" ref_strand="+" ref_description="SGN-E322697 [cTOB-26-L13]">
      <seq>tgaaatttggctaccgactgaaatcgtttcgtttcatttctgagctagcaatggaagctctactgggaagttcgaattctccttcattcaccatcatcagaagaaaccccattacttcttttaaggtgctttcatggaattctttgtacagcggaagtaataaatctcgagtatatcatcctatattgtgtctgaaaagaagtggcaatgacaactctggaagttgctctccttcatgctacattgagcaaatgtacagaaacagaatgttttctcagccaatccggaggtgtagaaaaatattcatagataagcaaagtttgctggttatacaaaatggcttagcttttataccaagaaaattcaaatccagtctccgcaaaacattaaagcattctgaactttgtaagagtatagtacctgagatatttgttcggtcctgcataggactaatgctggttatggctgtcaatgctgctgttgtcaaagcgccttcttttgctctcactgaagaaaatctacttttcttggaggcatggagaacaattgaccgtgcatatattgacaagaccttcaatggtcaaagttggtttaggtaccgagaagacgctctacgaaatgaaccaatgaacacnaggcaggaaacatatgcagcaataaaaagatgctcgccactctgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63335" stop="67296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63635" g_stop="63759" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63760" i_stop="65743" i_length="1984">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65744" g_stop="66116" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="498" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66117" i_stop="66219" i_length="103">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66220" g_stop="66369" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="648" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66370" i_stop="66959" i_length="590">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66960" g_stop="66996" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="684" r_length="36" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E322697" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63635" e_stop="63759"/>
          <exon e_start="65744" e_stop="66116"/>
          <exon e_start="66220" e_stop="66369"/>
          <exon e_start="66960" e_stop="66996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTTGGCTACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAGGTATGTGAAAAAATGGGAAAGTTTAGTTTTTTATGGTTTTTGAAATAACCCCATTTGGTCAAGTGGGCAAATTCCATTTCATATTACTAGTTGTTGTTTTAGTTGGTGTTCTTGATTTCATTAATTTCTCGATGTTTCAATTTATGTGATTGTGTTTGACTGGAAATTGAGATTGAAATAGTTCTAATTTGATTTTTGTGTAGTATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAGGTATGTGAAAATTGGAAATTTTGAAGTTTTTTTTTATGGTTCTTGAAATAACCCCATTTGTTCAAGTGGACAAATTCCCTAATATTTCATATTTACTATTTGTTATTTTAGTTGGTGTTCTTGATTTCATAAGTTTCCTGATGGTTCAATTTATGTGACGGTGTTTGACTGGAGTTTGAAATAGTACTAATATGGTATTGTGTAGTATGAATGGTAGTAGAATTCAACAACAAGAACATATCTAGTGTAGTCTATGGGGAGGGTAGAGTGTACGTAGACTTTACCCCTACCTAGTGACGGAGTTGCAATTTTCATCAAGGGGTTCACCATCTACTTTATATATATAAAAGATAATTTTAACCATGTAATAAACAGTATGATTCTCCATAAAAGGGGGTTCGGATGAAGCCCTTGATCCTACTTGGCTCCGTACCTTGTCCCTACCTCAGGGGTAGAGAGGTTGTTTCCGATAAACCCTTGTCTCAAGATGAATAGTAGTAGAAGAAGATATTAATTAGCTTAGATAGTTTTAGTTTGCTTAGAAAAGTATTGAAGTGTAAAATAAGTTTAGGACAGGAGAAAATATAGTGATTTCTGTACATCTGCCTAACTCTGGAGGAATAATGAAGATTTGCACTAGCTGGCCTGGATTAAATAATTTTAATGACTGAATTGTGTGTACTATTTTTGAATTCTTGAAAGGGAAAGAGTGTAGTATAGATTAAAAGTTTAAAACTAGAAGAGTTCATTATTTAAGCAGTCTGTTTTCTCAATTGTGAAACATGGAAATCCTTGTTTAAACTTATATAGTAAACAAGTACTTATGTATTTTAAAGTTTTCACAGAGCCAGTAATTCGAGTTAAGATTGAAACTTTACATTGTTTTTCATTTGATGATAATCTCACGATATTTAGTGTGTCAAATGAAAGAAAAGGTAGAAATTGAAAGATCCGAACATTATTTGAGAGGCTTGAATCAGAGAGGTAAAAAATTGACTCCTTCGTTCAGTCATATGAGTCAGCCCCAAACTAGTTGGTGCAGGCAACATGGTTCCGCTATATCCTTTCCACTCTATTCATGCTATTTCATTGCAGTACTGGTACATAATTGGTCTTTTAAGACCAAAAAGCATATACTTTTAAACATTATGATTTAATTAAAGGGGGAAGGTCCAAATTTATCCCTGTACTATTTAAATCACTCAATGTTGCCTCTGTCACACTTTTGGTTCATTCATATTCTTGTTGTTAACAAATCACCACGTAGTTTTCCTTTTTGTTAATGGAACTCCAGCGTAAAATTGGTGGACTCTACGTGTCCAAATTTTTGAGAAAAAATGTCCAAATTTATCCATCAACCTTACTTTGGAGCTTCATTAGTACGGGTCAAGGGTAAAAATAAGACTGCTTCACAGCGGAGGGGGTAAAATAGACCAAAAGTTTATAGAGGCAAAAGTTGCTCAATTTTAGATAGTAATCGGGAAAATTTAACCTTTTCCCTTTAGTTAATTTTAAAGGAGCTGGAAGGCAAAGAAATGATCATGAGGAATTATTCTTGCTTGTATGTGGTGGACCATCTAGAAGGAACAAAATTAACATGTTCGTTCTGTAAACAAGAAGTAAAGCATCTCCAAACTAAAAGCTACTCGTCTTTCTCTTTGTCTTTGTGTTTTTGGTGCAAAAGTGCAAAATTTACACGATATAGATAGTCAAGTAGACTTAATCAATAAACATTCTGCAGGTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGTATAGTACCTGAGATATTTGTTCGGTCCTGCATAGGACTAATGCTGGTTATGGCTGTCAATGCTGCTGTTGTCAAAGCGCCTTCTTGTAAGTCTGTCAGTTTGATGGATCATGTCAAGCTTTTCCATGTTGTAAGACTCAATTATTCAAATATAAGTAATGAAATTCCTATTTTCTTCCCATTTTACAGTTGCTCTCACTGAAGAAAATCTACTTTTCTTGGAGGCATGGAGAACAATTGACCGTGCATATATTGACAAGACCTTCAATGGTCAAAGTTGGTTTAGGTACCGAGAAGACGCTCTACGAAATGAACCAATGAACACAAGGCAGGAAACATGTAAGTCTTGCCCTTTTTTTGGATGGTCTGTTAGTGATTATCTGCATGAAGTTTTGCAGAATACTCGGGGAAGAAATGATCTGCTATGCATCTGCGTTTAAGCTTTGATTGAAAAAGAAGAAAACATTATTCCGAGTAGGTAGAGGACTAGAGTGTGCAATCTATATAGAAGGGAAAATGTATTAGTTAATCTTACATACATGTATAACAAGATGCAAGTTAGCAAATAGTACCCGGCACATTTTTCTATTTTCTTTTTGCCGACAAGATGCTATATTGTGCCCATCAGTCTGTTGATATACCTTTTGGTCAAGCTCACCTGCATGATGGACTAATAGTTTGTATCTTGAGTTCTGAATTTTTGATTGATGTGTGCTTTAAGCAACCTCATCTATTTTATGGAACCATGCCATTTGTGGCAGGAAACTCTGTTTATCAATATATATAGTCATAGAAACGTACAGATTCCAATAACCAGCCTTGAAGCTTTAAACTTGTCTGGAAGTATGAAATGACTTGTCTCAGCTACAGCTGTAGTTTTCCATCCCTTAAATACATATTGTTAAATCATTGCACTACACTGTCTCCAGATGCAGCAATAAAAAAGATGCTCGCCACTCTGAATGA</genome_strand>
        <mrna_strand>TGAAATTTGGCTACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGTATAGTACCTGAGATATTTGTTCGGTCCTGCATAGGACTAATGCTGGTTATGGCTGTCAATGCTGCTGTTGTCAAAGCGCCTTCTT.......................................................................................................TTGCTCTCACTGAAGAAAATCTACTTTTCTTGGAGGCATGGAGAACAATTGACCGTGCATATATTGACAAGACCTTCAATGGTCAAAGTTGGTTTAGGTACCGAGAAGACGCTCTACGAAATGAACCAATGAACACNAGGCAGGAAACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCAAT-AAAAAGATGCTCGCCACTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208873" ref_strand="+" ref_description="SGN-E208873 [cLEC-51-D9]">
      <seq>taccgactgaaatcgtttcgtttcatttctgagctagcaatggaagctctactgggaagttcgaattctccttcattcaccatcatcagaagaaaccccattacttcttttaagtatgaatggtagtagaagaaaccccattatttcttttaaggtgctttcatggaattctttgtacagcggaagtaataaatctcgagtatatcatcctatattgtgtctgaaaagaagtggcaatgacaactctggaagttgctctccttcatgctacattgagcaaatgtacagaaacagaatgttttctcagccaatccggaggtgtagaaaaatattcatagataagcaaagtttgctggttatacaaaatggcttagcttttataccaagaaaattcaaatgcagtctccgcaaaacattaaagcattctgaactttgtaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63346" stop="66331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63646" g_stop="63759" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63760" i_stop="63962" i_length="203">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.406" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63963" g_stop="64002" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="154" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64003" i_stop="65743" i_length="1741">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65744" g_stop="66031" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="442" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E208873" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63646" e_stop="63759"/>
          <exon e_start="63963" e_stop="64002"/>
          <exon e_start="65744" e_stop="66031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAGGTATGTGAAAAAATGGGAAAGTTTAGTTTTTTATGGTTTTTGAAATAACCCCATTTGGTCAAGTGGGCAAATTCCATTTCATATTACTAGTTGTTGTTTTAGTTGGTGTTCTTGATTTCATTAATTTCTCGATGTTTCAATTTATGTGATTGTGTTTGACTGGAAATTGAGATTGAAATAGTTCTAATTTGATTTTTGTGTAGTATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAGGTATGTGAAAATTGGAAATTTTGAAGTTTTTTTTTATGGTTCTTGAAATAACCCCATTTGTTCAAGTGGACAAATTCCCTAATATTTCATATTTACTATTTGTTATTTTAGTTGGTGTTCTTGATTTCATAAGTTTCCTGATGGTTCAATTTATGTGACGGTGTTTGACTGGAGTTTGAAATAGTACTAATATGGTATTGTGTAGTATGAATGGTAGTAGAATTCAACAACAAGAACATATCTAGTGTAGTCTATGGGGAGGGTAGAGTGTACGTAGACTTTACCCCTACCTAGTGACGGAGTTGCAATTTTCATCAAGGGGTTCACCATCTACTTTATATATATAAAAGATAATTTTAACCATGTAATAAACAGTATGATTCTCCATAAAAGGGGGTTCGGATGAAGCCCTTGATCCTACTTGGCTCCGTACCTTGTCCCTACCTCAGGGGTAGAGAGGTTGTTTCCGATAAACCCTTGTCTCAAGATGAATAGTAGTAGAAGAAGATATTAATTAGCTTAGATAGTTTTAGTTTGCTTAGAAAAGTATTGAAGTGTAAAATAAGTTTAGGACAGGAGAAAATATAGTGATTTCTGTACATCTGCCTAACTCTGGAGGAATAATGAAGATTTGCACTAGCTGGCCTGGATTAAATAATTTTAATGACTGAATTGTGTGTACTATTTTTGAATTCTTGAAAGGGAAAGAGTGTAGTATAGATTAAAAGTTTAAAACTAGAAGAGTTCATTATTTAAGCAGTCTGTTTTCTCAATTGTGAAACATGGAAATCCTTGTTTAAACTTATATAGTAAACAAGTACTTATGTATTTTAAAGTTTTCACAGAGCCAGTAATTCGAGTTAAGATTGAAACTTTACATTGTTTTTCATTTGATGATAATCTCACGATATTTAGTGTGTCAAATGAAAGAAAAGGTAGAAATTGAAAGATCCGAACATTATTTGAGAGGCTTGAATCAGAGAGGTAAAAAATTGACTCCTTCGTTCAGTCATATGAGTCAGCCCCAAACTAGTTGGTGCAGGCAACATGGTTCCGCTATATCCTTTCCACTCTATTCATGCTATTTCATTGCAGTACTGGTACATAATTGGTCTTTTAAGACCAAAAAGCATATACTTTTAAACATTATGATTTAATTAAAGGGGGAAGGTCCAAATTTATCCCTGTACTATTTAAATCACTCAATGTTGCCTCTGTCACACTTTTGGTTCATTCATATTCTTGTTGTTAACAAATCACCACGTAGTTTTCCTTTTTGTTAATGGAACTCCAGCGTAAAATTGGTGGACTCTACGTGTCCAAATTTTTGAGAAAAAATGTCCAAATTTATCCATCAACCTTACTTTGGAGCTTCATTAGTACGGGTCAAGGGTAAAAATAAGACTGCTTCACAGCGGAGGGGGTAAAATAGACCAAAAGTTTATAGAGGCAAAAGTTGCTCAATTTTAGATAGTAATCGGGAAAATTTAACCTTTTCCCTTTAGTTAATTTTAAAGGAGCTGGAAGGCAAAGAAATGATCATGAGGAATTATTCTTGCTTGTATGTGGTGGACCATCTAGAAGGAACAAAATTAACATGTTCGTTCTGTAAACAAGAAGTAAAGCATCTCCAAACTAAAAGCTACTCGTCTTTCTCTTTGTCTTTGTGTTTTTGGTGCAAAAGTGCAAAATTTACACGATATAGATAGTCAAGTAGACTTAATCAATAAACATTCTGCAGGTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGT</genome_strand>
        <mrna_strand>TACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG...........................................................................................................................................................................................................TATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATGCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338294" ref_strand="+" ref_description="SGN-E338294 [cTOE-13-D21]">
      <seq>gaaatcgtttcgtttcatttctgagctagcaatggaagctctactgggaagttcgaattctccttcattcaccatcatcagaagaaaccccattacttcttttaaggtgctttcatggaattctttgtacagcggaagtaataaatctcgagtatatcatcctatattgtgtctgaaaagaagtggcaatgacaactctggaagttgctctccttcatgctacattgagcaaatgtacagaaacagaatgttttctcagccaatccggaggtgtagaaaaatattcatagataagcaaagtttgctggttatacaaaatggcttagcttttataccaagaaaattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63354" stop="66286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63654" g_stop="63759" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63760" i_stop="65743" i_length="1984">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65744" g_stop="65986" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="349" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E338294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63654" e_stop="63759"/>
          <exon e_start="65744" e_stop="65986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAGGTATGTGAAAAAATGGGAAAGTTTAGTTTTTTATGGTTTTTGAAATAACCCCATTTGGTCAAGTGGGCAAATTCCATTTCATATTACTAGTTGTTGTTTTAGTTGGTGTTCTTGATTTCATTAATTTCTCGATGTTTCAATTTATGTGATTGTGTTTGACTGGAAATTGAGATTGAAATAGTTCTAATTTGATTTTTGTGTAGTATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAGGTATGTGAAAATTGGAAATTTTGAAGTTTTTTTTTATGGTTCTTGAAATAACCCCATTTGTTCAAGTGGACAAATTCCCTAATATTTCATATTTACTATTTGTTATTTTAGTTGGTGTTCTTGATTTCATAAGTTTCCTGATGGTTCAATTTATGTGACGGTGTTTGACTGGAGTTTGAAATAGTACTAATATGGTATTGTGTAGTATGAATGGTAGTAGAATTCAACAACAAGAACATATCTAGTGTAGTCTATGGGGAGGGTAGAGTGTACGTAGACTTTACCCCTACCTAGTGACGGAGTTGCAATTTTCATCAAGGGGTTCACCATCTACTTTATATATATAAAAGATAATTTTAACCATGTAATAAACAGTATGATTCTCCATAAAAGGGGGTTCGGATGAAGCCCTTGATCCTACTTGGCTCCGTACCTTGTCCCTACCTCAGGGGTAGAGAGGTTGTTTCCGATAAACCCTTGTCTCAAGATGAATAGTAGTAGAAGAAGATATTAATTAGCTTAGATAGTTTTAGTTTGCTTAGAAAAGTATTGAAGTGTAAAATAAGTTTAGGACAGGAGAAAATATAGTGATTTCTGTACATCTGCCTAACTCTGGAGGAATAATGAAGATTTGCACTAGCTGGCCTGGATTAAATAATTTTAATGACTGAATTGTGTGTACTATTTTTGAATTCTTGAAAGGGAAAGAGTGTAGTATAGATTAAAAGTTTAAAACTAGAAGAGTTCATTATTTAAGCAGTCTGTTTTCTCAATTGTGAAACATGGAAATCCTTGTTTAAACTTATATAGTAAACAAGTACTTATGTATTTTAAAGTTTTCACAGAGCCAGTAATTCGAGTTAAGATTGAAACTTTACATTGTTTTTCATTTGATGATAATCTCACGATATTTAGTGTGTCAAATGAAAGAAAAGGTAGAAATTGAAAGATCCGAACATTATTTGAGAGGCTTGAATCAGAGAGGTAAAAAATTGACTCCTTCGTTCAGTCATATGAGTCAGCCCCAAACTAGTTGGTGCAGGCAACATGGTTCCGCTATATCCTTTCCACTCTATTCATGCTATTTCATTGCAGTACTGGTACATAATTGGTCTTTTAAGACCAAAAAGCATATACTTTTAAACATTATGATTTAATTAAAGGGGGAAGGTCCAAATTTATCCCTGTACTATTTAAATCACTCAATGTTGCCTCTGTCACACTTTTGGTTCATTCATATTCTTGTTGTTAACAAATCACCACGTAGTTTTCCTTTTTGTTAATGGAACTCCAGCGTAAAATTGGTGGACTCTACGTGTCCAAATTTTTGAGAAAAAATGTCCAAATTTATCCATCAACCTTACTTTGGAGCTTCATTAGTACGGGTCAAGGGTAAAAATAAGACTGCTTCACAGCGGAGGGGGTAAAATAGACCAAAAGTTTATAGAGGCAAAAGTTGCTCAATTTTAGATAGTAATCGGGAAAATTTAACCTTTTCCCTTTAGTTAATTTTAAAGGAGCTGGAAGGCAAAGAAATGATCATGAGGAATTATTCTTGCTTGTATGTGGTGGACCATCTAGAAGGAACAAAATTAACATGTTCGTTCTGTAAACAAGAAGTAAAGCATCTCCAAACTAAAAGCTACTCGTCTTTCTCTTTGTCTTTGTGTTTTTGGTGCAAAAGTGCAAAATTTACACGATATAGATAGTCAAGTAGACTTAATCAATAAACATTCTGCAGGTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAA</genome_strand>
        <mrna_strand>GAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707358" ref_strand="+" ref_description="SGN-E707358 [FA32DB04]">
      <seq>ctttggactggtcgttatctcagcttctccaggaggtcctgcaaatagggctggcatctcatctggtgatatcatcctacaaattgacaataccagcacagaaaacatgggtatatatgatgcagcagaacggttacaaggacctgaaggaagtggtgtggaactaactgtacttcatggatccgagagaaggcagctaccattaatacgggaaaaagtttctctgaatcctgtaaaatcaagaatctgcaagctacccactggaggagatgatgctcctctgatcggatacatcaaactatcaacattcaaccagaacgcttctggtgctgtaagagaggcgattgaaaccttaaggaaaaacaatgtcaaggcatttgtcttggaccttcgggataacagtggtggtctcttccctgaaggagttgagatagcaaaaatttggttggataaaggtgtgattgtatacatttgtgatagccgtggtgttcgagatatttatgacacggatgggagcaatgtggtagctgcttcagagcccctagctgtgctggtaaacaaagggactgcaagtgcaagtgagattttagccggtgctttgaaagataacaagcgtgcacagctgtttggtgaaccaacatatggcaagggtaaaatccagtctgtattccagctatctgatggctctggcgtggctgttacagttgctcggtatgaaactcctgctcacaacgatatagacaaggttggtgtcaccccggaccatcctttgccagcatcatttccaaaagacgacgagagcttctgtaactgccttcaaaatcctgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="66922" stop="70993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67222" g_stop="67359" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67360" i_stop="68135" i_length="776">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68136" g_stop="68204" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="207" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68205" i_stop="68482" i_length="278">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68483" g_stop="68601" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68602" i_stop="69080" i_length="479">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69081" g_stop="69156" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="402" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69157" i_stop="69226" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69227" g_stop="69268" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="444" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69269" i_stop="69692" i_length="424">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69693" g_stop="69801" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="553" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69802" i_stop="70239" i_length="438">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70240" g_stop="70337" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="651" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="70338" i_stop="70423" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70424" g_stop="70517" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="745" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70518" i_stop="70604" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70605" g_stop="70693" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="834" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E707358" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67222" e_stop="67359"/>
          <exon e_start="68136" e_stop="68204"/>
          <exon e_start="68483" e_stop="68601"/>
          <exon e_start="69081" e_stop="69156"/>
          <exon e_start="69227" e_stop="69268"/>
          <exon e_start="69693" e_stop="69801"/>
          <exon e_start="70240" e_stop="70337"/>
          <exon e_start="70424" e_stop="70517"/>
          <exon e_start="70605" e_stop="70693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGGACTGGTCGTTATCTCAGCTTCTCCAGGAGGTCCTGCAAATAGGGCTGGCATCTCATCTGGTGATATCATCCTACAAATTGACAATACCAGCACAGAAAACATGGGTATATATGATGCAGCAGAACGGTTACAGTAAGTTTTCTTCTGGTCCTGACGTGCAGTTTCATTTTATGCTTCACAGTTCAAATTCTTGATGAGATGAAGTCTTATTCTGGGTTTACCAGACAAGTGAAGCACAACGACTGAGAGCTTGAACATCAGTAAAATTATTGAATTTACTTGTAACGATTGCCATGCTTTTTTTTTAATAGTATTTTGCCATGATTTCTTCACTTCCGTTATTTCTTTTTCAATCTGCTTTGATACACCTTCCTTTGAGCTGAGGGTCTATGGGAAGCAACCTCTCTACCTCCCAAGGTAGGGGTAAGGTCTGTGTACACTCTATACTCTTTGGCCCCACTTGTGGGATCACACTGGGCATGTTGCTGTTGTTACTTACTCATAACTATTGCACCTGACAAACCTAATGATAGGATCTGCATGCTAGAACTATAAGTCAGAGGTCATAATCCTTCTCACGTTATACTGAATCAAACTGGAAATATTCCTGGGAGAAACAGTATTACTTCTAATTAATGAGGGAGAAACATTGACTGATCAAAAAGAAAAAAGAGAACGCTGAAGTAGAAGTAATTTTACTCTGCTATCATACATATGAGTTCATAAACAAGAATCACGTGGCTAATAGGTTTGTAACTGTAGGTCAATATCTCATAATATTTTCTGATTCTAAGATCTCAATATCAACAGGTTGGTAGTCTGTTTTTCCCCTGGCGATTATGTCTATAGCTTAAGTTTATATGCATATATTTTCCTCTTTATTTATTGTTATTTTTGTTGACATACAGAGGACCTGAAGGAAGTGGTGTGGAACTAACTGTACTTCATGGATCCGAGAGAAGGCAGCTACCATTAATGTGTGTTCATCTTGTTGAACTCTACTAAAGTTTTCTATGATCTGCATACTTCTGTTACTTTTATATATGACTCTTGCATACTTCTTTTATTTTTAAGTATGACTATTGCTATTAATGCATCTATTAATTAGTTTAAGCTCGTACCTTCTTCCTTAGCTGTTATTACAGTAAAACATATGTAAATGTTTTTTTTTTTTGGTTTATGATTATGCTCTTTTATATTCTTAGCTAGAGAGATACCTATTCTTAACAAATACTAATAATGTGCTGTCTTCCAGACGGGAAAAAGTTTCTCTGAATCCTGTAAAATCAAGAATCTGCAAGCTACCCACTGGAGGAGATGATGCTCCTCTGATCGGATACATCAAACTATCAACATTCAACCAGAACGCTTCTGGTAAACTATCTTATCAACTACTTCTAATATTAAAAACACTATCCTACTTAATAGAAAACCAGACTACTCTCAAATCGCCTATTATCTGAACTAGTAGCCTTGCTTCTTCTTTTTTCCTCCTTCTAGGGAGTGGTTTGTCACTATGCAGATGCATTGCATCAAATCGGAGACTTTTTTCTACTCTCTGATTTGGTTATCAGAAGTTGTACACACTTCATGTTTAGAATTTTCTTGATCTTACTGGTATTTTCACTGTTAGTATGCCATCATTGAATATAGCATTTCTGTCAATGACAATGAAATCATTTGGAAAGTGAATCCTGCATTTCATATTGCTACACTTTATATCTATCATTTTATGCATGCTTCCACTAAAATTTTCTAGAAATGTGATGATTTCAGTACGTGTTTGAAGAGTTAAACATCGTGGTAGTTTTTTCATAAATTCCAGTTAAGTAGTCATGTAAATCTCCCTATAGGTGCTGTAAGAGAGGCGATTGAAACCTTAAGGAAAAACAATGTCAAGGCATTTGTCTTGGACCTTCGGGATAACAGGTGATAAGCTCTCACCCTGTCTTCATTTCACAGTCTTTAATTGTGATCTGAAAGTTGAGATCTTGTGCAGTGGTGGTCTCTTCCCTGAAGGAGTTGAGATAGCAAAAATTTGGTAAGCTGTGTTTGGATTTTCCAGTTTGAAGTGTCTGCTTAGTTTTCTTCTGATGATCCAATGTACTCGAGTGCTAGTTTCTCAATAAGTATTACTCATCTTTTCAAGGGTCGATGTAGGTGTTGACAATGAAATTTTTTTCCCTATTTTATTCTTTTTACATAAGAGTGCCACATAGGTCTATATACTGTTAAATACTAGAAGTTCTTTTAATACAATGTAGTCTAGTCAAAATAATATTTTCGATTCACAACAGAGAGATTATGAGATTACTTTGTTAGTGATACAATGAAGTTTCTTTCTTTGGTTCAGCATATTATTATTCTCTAGCTTTTTCGTTCTAATGTTTGCCCCTTTGACGCTACTGCTACTGCTATGCAAGAAGACTAAACTGTGCTATGCAATGGATTTCACTGCCAACCAGGTTGGATAAAGGTGTGATTGTATACATTTGTGATAGCCGTGGTGTTCGAGATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTGGTAAGTGTATTCATACTTAGTCATTTATGTTGACATGGATTAGCCTAACCTCAGCTAAGTGGTTTTTGTGATGAAGGTAGACAATTGAGTTGGTTTTGTTTTTTCCCCTTGTGCACTTAAATTCCACCGCATCTTCTTGTTTTGTGATGCTCGCGGCTGGACTGTAGTTCTCATTTATCAAATATTGGTGCTTAATGATGTATAATGATCCTATTCTTCCGGTGTATTTGAGTTTGACATGAATTTCGTATTTTGCACTGCAAATCTTTCCAGTCAGAGGCTCACTTTCTGTCACAGTTCAGCATTTTAAGTTTATCTTTGGCTTTGCCAAAAGTTGTTCTAGTTTCTCTTTCAATCACTCAAGTTCACACTTCACACACTGATTCCGCCAATCCCTGAACTCTCCCCGGGCCAAACTCACGTGCATATGCTTGTCAGGTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGGGTAATAACTTTATTTACTTACATGCAAATACGCTTTAGCTGGCAAAAGAAGAATGCTATTCTTACTTGTTTCTTCTTCTGATACAGTAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAGGTCCACACACTCTCTATCTCCTCACTCTCGTTCTGATATATACATGCCACAAACAAATATGGTTATTGATGTGTATCGTCTTTCTAGGTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGC</genome_strand>
        <mrna_strand>CTTTGGACTGGTCGTTATCTCAGCTTCTCCAGGAGGTCCTGCAAATAGGGCTGGCATCTCATCTGGTGATATCATCCTACAAATTGACAATACCAGCACAGAAAACATGGGTATATATGATGCAGCAGAACGGTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACCTGAAGGAAGTGGTGTGGAACTAACTGTACTTCATGGATCCGAGAGAAGGCAGCTACCATTAAT......................................................................................................................................................................................................................................................................................ACGGGAAAAAGTTTCTCTGAATCCTGTAAAATCAAGAATCTGCAAGCTACCCACTGGAGGAGATGATGCTCCTCTGATCGGATACATCAAACTATCAACATTCAACCAGAACGCTTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGTAAGAGAGGCGATTGAAACCTTAAGGAAAAACAATGTCAAGGCATTTGTCTTGGACCTTCGGGATAACAG......................................................................TGGTGGTCTCTTCCCTGAAGGAGTTGAGATAGCAAAAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGATAAAGGTGTGATTGTATACATTTGTGATAGCCGTGGTGTTCGAGATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGG......................................................................................TAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAG.......................................................................................GTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689268" ref_strand="+" ref_description="SGN-E689268 [t3_tus_80_M23]">
      <seq>gatatttatgacacggatgggagcaatgtggtagctgcttcagagcccctagctgtgctggtaaacaaagggactgcaagtgcaagtgagattttagccggtgctttgaaagataacaagcgtgcacagctgtttggtgaaccaacatatggcaagggtaaaatccagtctgtattccagctatctgatggctctggcgtggctgttacagttgctcggtatgaaactcctgctcacaacgatatagacnaggttggtgtcaccccggaccatcctttgccagcatcatttccaaaagacgacgagagcttctgtaactgccttcaaaatcctgctgctgcttgccacatagatngagtcgagttgttctcaaaatgactcaatcctgcaatctgaagaaaataccttactttttcaacattttgtttgtagataccattgattctttaaccagatacatgcatctgatgtttgtacatacnaagaaccaagaacaaagggacaactcaattcctaatactgttgaactctttgctctaaaaagtgtctatnttacccttgaactattggaaatggaacaactgtgccgccttcttaatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69442" stop="71256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69742" g_stop="69801" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69802" i_stop="70239" i_length="438">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70240" g_stop="70337" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="158" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70338" i_stop="70423" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70424" g_stop="70517" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="252" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70518" i_stop="70604" i_length="87">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70605" g_stop="70956" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="604" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E689268" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69742" e_stop="69801"/>
          <exon e_start="70240" e_stop="70337"/>
          <exon e_start="70424" e_stop="70517"/>
          <exon e_start="70605" e_stop="70956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTGGTAAGTGTATTCATACTTAGTCATTTATGTTGACATGGATTAGCCTAACCTCAGCTAAGTGGTTTTTGTGATGAAGGTAGACAATTGAGTTGGTTTTGTTTTTTCCCCTTGTGCACTTAAATTCCACCGCATCTTCTTGTTTTGTGATGCTCGCGGCTGGACTGTAGTTCTCATTTATCAAATATTGGTGCTTAATGATGTATAATGATCCTATTCTTCCGGTGTATTTGAGTTTGACATGAATTTCGTATTTTGCACTGCAAATCTTTCCAGTCAGAGGCTCACTTTCTGTCACAGTTCAGCATTTTAAGTTTATCTTTGGCTTTGCCAAAAGTTGTTCTAGTTTCTCTTTCAATCACTCAAGTTCACACTTCACACACTGATTCCGCCAATCCCTGAACTCTCCCCGGGCCAAACTCACGTGCATATGCTTGTCAGGTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGGGTAATAACTTTATTTACTTACATGCAAATACGCTTTAGCTGGCAAAAGAAGAATGCTATTCTTACTTGTTTCTTCTTCTGATACAGTAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAGGTCCACACACTCTCTATCTCCTCACTCTCGTTCTGATATATACATGCCACAAACAAATATGGTTATTGATGTGTATCGTCTTTCTAGGTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGCTTGCCACATAGATAGAGTCGAGTTGTTCTCAAAATGACTCAATCCTGCAATCTGAAGAAAATACCTTACTTTTTCAACATTTTGTTTGTAGATACCATTGATTCTTTAACCAGATACATGCATCTGATGTTTGTACATACAAAGAACCAAGAACAAAGGGACAACTCAATTCCTAATACTGTTGAACTCTTTGCTCTAAAAAGTGTCTATTTTACCCTTGAACTATTGGAAATGGAACAACTGTGCCGCCTTCTTAATATAAA</genome_strand>
        <mrna_strand>GATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGG......................................................................................TAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACNAG.......................................................................................GTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGCTTGCCACATAGATNGAGTCGAGTTGTTCTCAAAATGACTCAATCCTGCAATCTGAAGAAAATACCTTACTTTTTCAACATTTTGTTTGTAGATACCATTGATTCTTTAACCAGATACATGCATCTGATGTTTGTACATACNAAGAACCAAGAACAAAGGGACAACTCAATTCCTAATACTGTTGAACTCTTTGCTCTAAAAAGTGTCTATNTTACCCTTGAACTATTGGAAATGGAACAACTGTGCCGCCTTCTTAATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326385" ref_strand="+" ref_description="SGN-E326385 [cTOC-14-G7]">
      <seq>atatttatgacacggatgggagcaatgtggtagctgcttcagagcccctagctgtgctggtaaacaaagggactgcaagtgcaagtgagattttagccggtgctttgaaagataacaagcgtgcacagctgtttggtgaaccaacatatggcaagggtaaaatccagtctgtattccagctatctgatggctctggcgtggctgttacagttgctcggtatgaaactcctgctcacaacgatatagacaaggttggtgtcaccccggaccatcctttgccagcatcatttccaaaagacgacgagagcttctgtaactgccttcaaaatcctgctgctgcttgccacatagatagagtcgagttgttctcaaaatgactcaatcctgcaatctgaagaaaataccttactttttcaacattttgtttgtagataccattgattctttaaccagatacatgcatctgatgtttgtacatacaaagaaccaagaacaaagggacaactcaattcctaatactgttgaactctttgctctaaaaagtgtctattttacccttgaactattggaaatggaacaactgtgccgccttcttaatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69443" stop="71256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69743" g_stop="69801" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69802" i_stop="70239" i_length="438">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70240" g_stop="70337" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="157" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70338" i_stop="70423" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70424" g_stop="70517" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70518" i_stop="70604" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70605" g_stop="70956" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="603" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E326385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69743" e_stop="69801"/>
          <exon e_start="70240" e_stop="70337"/>
          <exon e_start="70424" e_stop="70517"/>
          <exon e_start="70605" e_stop="70956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTGGTAAGTGTATTCATACTTAGTCATTTATGTTGACATGGATTAGCCTAACCTCAGCTAAGTGGTTTTTGTGATGAAGGTAGACAATTGAGTTGGTTTTGTTTTTTCCCCTTGTGCACTTAAATTCCACCGCATCTTCTTGTTTTGTGATGCTCGCGGCTGGACTGTAGTTCTCATTTATCAAATATTGGTGCTTAATGATGTATAATGATCCTATTCTTCCGGTGTATTTGAGTTTGACATGAATTTCGTATTTTGCACTGCAAATCTTTCCAGTCAGAGGCTCACTTTCTGTCACAGTTCAGCATTTTAAGTTTATCTTTGGCTTTGCCAAAAGTTGTTCTAGTTTCTCTTTCAATCACTCAAGTTCACACTTCACACACTGATTCCGCCAATCCCTGAACTCTCCCCGGGCCAAACTCACGTGCATATGCTTGTCAGGTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGGGTAATAACTTTATTTACTTACATGCAAATACGCTTTAGCTGGCAAAAGAAGAATGCTATTCTTACTTGTTTCTTCTTCTGATACAGTAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAGGTCCACACACTCTCTATCTCCTCACTCTCGTTCTGATATATACATGCCACAAACAAATATGGTTATTGATGTGTATCGTCTTTCTAGGTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGCTTGCCACATAGATAGAGTCGAGTTGTTCTCAAAATGACTCAATCCTGCAATCTGAAGAAAATACCTTACTTTTTCAACATTTTGTTTGTAGATACCATTGATTCTTTAACCAGATACATGCATCTGATGTTTGTACATACAAAGAACCAAGAACAAAGGGACAACTCAATTCCTAATACTGTTGAACTCTTTGCTCTAAAAAGTGTCTATTTTACCCTTGAACTATTGGAAATGGAACAACTGTGCCGCCTTCTTAATATAAA</genome_strand>
        <mrna_strand>ATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGG......................................................................................TAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAG.......................................................................................GTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGCTTGCCACATAGATAGAGTCGAGTTGTTCTCAAAATGACTCAATCCTGCAATCTGAAGAAAATACCTTACTTTTTCAACATTTTGTTTGTAGATACCATTGATTCTTTAACCAGATACATGCATCTGATGTTTGTACATACAAAGAACCAAGAACAAAGGGACAACTCAATTCCTAATACTGTTGAACTCTTTGCTCTAAAAAGTGTCTATTTTACCCTTGAACTATTGGAAATGGAACAACTGTGCCGCCTTCTTAATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723833" ref_strand="+" ref_description="SGN-E723833 [FC22AE03]">
      <seq>gggcgattggcggccaatcggccgaattccatggggatccgatgcacttcacaatcccaattctccaattgcatcagcgagagaagaagaagaagaatcaacaatgaagccgatggtagtagactatttagcagacatggaagaacaaggatcaacaatggcgatggacgttgatgacgtggacacaatcgacatgttcggcgaaggtccactcggtggtggcgaacacctccgactcgccgactccgacttcttcaatctctttcaggatgatttcgatgactcagatatcaactaaatctatcaactaaaactcttcctttcctaaaaaacaactacatgtgttgtttcttctcccttctagggtttactcttgcctatggtacgttgtacttaattttctgaaggaataaagcaatttttttggatgctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="71154" stop="100637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71459" g_stop="71850" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="439" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71851" i_stop="73895" i_length="2045">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73896" g_stop="73966" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="510" r_length="71" r_score="0.662"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E723833" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71459" e_stop="71850"/>
          <exon e_start="73896" e_stop="73966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAATCCCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAATTTTATCATAGCTTGCTTATTCACATCGATTTTTTTTTTGTGTTATTTTGAAAGCTTTTCGGGCGTTGTGTTCTGAGTTTCTGTTTATGAAGCAATAGTTAGTTGTATGTTGAATTTATAGCTGATTGTGAGGTATAGGTAGTTTCTAAGAGCTGAATTTGCTCTTTTTGATTGATCATTTGTTAAGTTCTTAGATGTAAGAGCTGATTCGAGTCTCTCTGTTAGCAAATCTATCCAAAAAATATGGTTTTTCTATGGAAGACAATCATCTATACTAATTTGAAATCTAGTCAGTTCTAGCAAATGATAAAAAATCACTAGGGACTCTTAGTATATATCGTTGGAGCAATTAGGGAACTTGGAGTGTTAGATAAGTAGTTTAAGTCTAGAATAATGAAATAATATGGATTCAAACGAAGCGCTTATGGTGATGAGGATTCATACTGCTGACTTGAACTAGCTTGGGACTGAGTTGTAGCTGATATTATTGGAAAATTTATGGTTTGGTTGTCATTGCTGTGACAAATTTACATGTGCAAACCATTGTTCGCCCCAATTTCAGATAAAGAAGGAAGGCTATGTAGGTTGACTGTGTCTGATCGGATGAATGCTCTTGTCATGACAGGTAGAATGACTGATTCATGTAGATTGTAGTCGACGCTAATTTGGGATTTAGGTGTAGACCTTTAGTTATTGGCCTTCTCATATTTCTTGCATGGTGGTTACCCAGATGTGTGATTTGGCAGTTCAGGTTTTCAATTGATATTTCTGGAGAAAACTGTGCGACACCATTCATTCTATTTCACTATCTTCTTGTGGAACCTGAGCTGTCTTCTGTATTGTCGTTTTCTCAGAGAGTCAAATTGCTTATGCGACACTTAAGTTTAGGTTGCTGTGTTCTGTCATTTCACCGTTTATGTGATACAGAGGACAATACTCTGGCTGGCTTGGTTCCTCTTTTCTGTTACGCATCTATAGTGGCTTAGTTTAATATATGTCGTTCGTACTTTCCAGAAGCATAAATTGTATGCCTTTCTTGAAGGTTGTTTTTTGGCATAGCGGTATGTTGCATATTACCTAATGTTGGAAGGTTAATCCATGTCATAGGCATTGCAGGAACACACAGGCATTTCAAAATGCTCATATAGGTTATGTCTTTCGATTGTTCATGTATAGTTGCGAACAATGCATGTTTGGTTTTGTTTGAAAGATTGAAATTCTTGCTTTCTATCCCAAGTTTTATCCGTTCTTTCATAACGGTGGTGTTCTAGCCAGCTTGTGTGCATATCTACTAATCCATTGAGTGCGTGCTATCGGAAGCTCCCTCGGGAATATTTTGAGCATTGGAAGTTAAGTACTTGAGTGAATGTTCCCAATGACCAGTGTCATGTTTCTGTGGCTGCGCTTTGTTGCTTCCGAGTACACGTCCGTGAAAAGGACTGAAATAAAACTGGAGAATTAACTATCTTCTTGAGCTTATAGTAGCTTTAGTGACATTGTTGGCATCATTTGTGTATGTACTTGAACATTAGGAACTTAGCATCCTTTGTACTTGTTACCATTCTCAGAAGAAAAAAAGTTTATGATCCTTTGCAAATATCTTGATTTATTTACAACCTTGTGGCGATATTGATATTTGTACCCAACTGGATAGGTTACTATTTAGAATGATGCAATATTTATGATGTTCACGTGGGCACCTATATATATTTTTAAAATACATTATTAAATAGTGCAGGAGTAATAGGGTCTACCCAAAGTTTGGGATTATTATAGTAATTTCGCTCAATGTTTAGATATATTTTGAATCAAATACTTCGGGTTGGCCAAGTAGTATGAGCTTGGGACTTCCATGTTGGAGGTCTCAAGTTCAAAATCCCTTGCCAGCGAAAGCAAGGGATTTGCCTTCTAGGTCAAGTTCGTCGCACCAGGCTTACCTAGTGCGGGTTACCTCTCCTATGTGGTTTACGAGCTATTGCATAGGAGCAGGGCTTTACCCTGTGAGCATCCAAAAAGGATAGTGGCTGCGGGTTTCCGTTGTTGTCAAAAAAACAAATACTTAAAAGAAAAAAGAGATAAAGATGCAAAAAAATGAGTGAAATAAAACATGATTAAA</genome_strand>
        <mrna_strand>TTCACAATCCCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689486" ref_strand="+" ref_description="SGN-E689486 [LH_Ea01A12]">
      <seq>caataaattctccaattgcatcagcgagggaagaagaagaccattcaacgatgaagccgatggtagtagactatttaacagacatggaagaacaaggatcaacaatggcgatggacgttgatgacgtggacacaattgacatgttcggcgaaggtccactcggtggcggcgaacacctccgtctcgccgactccgacttcttcaatctctttcaggatgatttcgatgactcagatatcagctaaatctatcaactaaaactcttcctttcctaaaaaacaactatatgtgatgtttcctctcccttctagggtttactcttgcctatggtacgttgtacttaattttctgaaggaataaagcaatttttttggaaccaaaatccagaaacccgggggaaccactaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="71170" stop="72139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71463" g_stop="71838" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E689486" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71463" e_stop="71838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGG</genome_strand>
        <mrna_strand>CAAT--AAATTCTCCAATTGCATCAGCGAGGGAAGAAGAAGACCATTCAACGATGAAGCCGATGGTAGTAGACTATTTAACAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATTGACATGTTCGGCGAAGGTCCACTCGGTGGCGGCGAACACCTCCGTCTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAGCTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTATATGTGATGTTTCCTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340284" ref_strand="+" ref_description="SGN-E340284 [cTOF-2-E11]">
      <seq>ccaattctccaattgcatcagcgagagaagaagaagaatatatcaacaatgaagccgatggtagtagactatttagcagacatggaagaacaaggatcaacaatggcgatggacgttgatgacgtggacacaatcgacatgttcggcgaaggtccactcggtggtggcgaacacctccgactcgccgactccgacttcttcaatctctttcaggatgatttcgatgactcagatatcaactaaatctatcaactaaaactcttcctttcctaaaaaacaactacatgtgttgtttcttctcccttctagggtttactcttgcctatggtacgttgtacttaattttctgaaggaataaagcaatttttttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="71168" stop="72139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71468" g_stop="71838" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="387"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E340284" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71468" e_stop="71838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGA-ATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGG</genome_strand>
        <mrna_strand>CCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAATATATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714815" ref_strand="-" ref_description="SGN-E714815 [FB12CA11]">
      <seq>ttttttttttttttttttttttgaataagcaagctatgataaaatttctagagcatccaaaaaaattgctttattccttcagaaaattaagtacaacgtaccataggcaagagtaaaccctagaagggagaagaaacaacacatgtagttgttttttaggaaaggaagagttttagttgatagatttagttgatatctgagtcatcgaaatcatcctgaaagagattgaagaagtcggagtcggcgagtcggaggtgttcgccaccaccgagtggaccttcgccgaacatgtcgattgtgtccacgtcatcaacgtccatcgccattgttgatccttgttcttccatgtctgctaaatagtctactaccatcggcttcattgttgattcttcttcttcttctctcgctgatgcaattggagaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100637" stop="71169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72424" g_stop="72402" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.522"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72401" i_stop="71872" i_length="530">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71469" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="426" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E714815" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72424" e_stop="72402"/>
          <exon e_start="71871" e_stop="71469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTTTATCTGAAATTGGGGCGAACAATGGTTTGCACATGTAAATTTGTCACAGCAATGACAACCAAACCATAAATTTTCCAATAATATCAGCTACAACTCAGTCCCAAGCTAGTTCAAGTCAGCAGTATGAATCCTCATCACCATAAGCGCTTCGTTTGAATCCATATTATTTCATTATTCTAGACTTAAACTACTTATCTAACACTCCAAGTTCCCTAATTGCTCCAACGATATATACTAAGAGTCCCTAGTGATTTTTTATCATTTGCTAGAACTGACTAGATTTCAAATTAGTATAGATGATTGTCTTCCATAGAAAAACCATATTTTTTGGATAGATTTGCTAACAGAGAGACTCGAATCAGCTCTTACATCTAAGAACTTAACAAATGATCAATCAAAAAGAGCAAATTCAGCTCTTAGAAACTACCTATACCTCACAATCAGCTATAAATTCAACATACAACTAACTATTGCTTCATAAACAGAAACTCAGAACACAACGCCCGAAAAGCTTTCAAAATAACACAAAAAAAAAATCGATGTGAATAAGCAAGCTATGATAAAATTTCTAGAGCATCCAAAAAAATTGCTTTATTCCTTCAGAAAATTAAGTACAACGTACCATAGGCAAGAGTAAACCCTAGAAGGGAGAAGAAACAACACATGTAGTTGTTTTTTAGGAAAGGAAGAGTTTTAGTTGATAGATTTAGTTGATATCTGAGTCATCGAAATCATCCTGAAAGAGATTGAAGAAGTCGGAGTCGGCGAGTCGGAGGTGTTCGCCACCACCGAGTGGACCTTCGCCGAACATGTCGATTGTGTCCACGTCATCAACGTCCATCGCCATTGTTGATCCTTGTTCTTCCATGTCTGCTAAATAGTCTACTACCATCGGCTTCATTGTTGATTCTTCTTCTTCTTCTCTCGCTGATGCAATTGGAGAATTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGCAAGCTATGATAAAATTTCTAGAGCATCCAAAAAAATTGCTTTATTCCTTCAGAAAATTAAGTACAACGTACCATAGGCAAGAGTAAACCCTAGAAGGGAGAAGAAACAACACATGTAGTTGTTTTTTAGGAAAGGAAGAGTTTTAGTTGATAGATTTAGTTGATATCTGAGTCATCGAAATCATCCTGAAAGAGATTGAAGAAGTCGGAGTCGGCGAGTCGGAGGTGTTCGCCACCACCGAGTGGACCTTCGCCGAACATGTCGATTGTGTCCACGTCATCAACGTCCATCGCCATTGTTGATCCTTGTTCTTCCATGTCTGCTAAATAGTCTACTACCATCGGCTTCATTGTTGATTCTTCTTCTTCTTCTCTCGCTGATGCAATTGGAGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352840" ref_strand="+" ref_description="SGN-E352840 [cTOS-11-G6]">
      <seq>aagaagaagaatcaacaatgaagccgatggtagtagactatttagcagacatggaagaacaaggatcaacaatggcgatggacgttgatgacgtggacacaatcgacatgttcggcgaaggtccactcggtggtggcgaacacctccgactcgccgactccgacttcttcaatctctttcaggatgatttcgatgactcagatatcaactaaatctatcaactaaaactcttcctttcctaaaaaacaactacatgtgttgtttcttctcccttctagggtttactcttgcctatggtacgttgtacttaattttctgaaggaataaagcaatttttttggatgctctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="71198" stop="72150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71498" g_stop="71855" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E352840" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71498" e_stop="71855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAATTTTA</genome_strand>
        <mrna_strand>AAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335181" ref_strand="+" ref_description="SGN-E335181 [cTOE-1-P23]">
      <seq>aacaatgaagccgatggtagtagactatttagcagacatggaagaacaaggatcaacaatggcgatggacgttgatgacgtggacacaatcgacatgttcggcgaaggtccactcggtggtggcgaacacctccgactcgccgactccgacttcttcaatctctttcaggatgatttcgatgactcagatatcaactaaatctatcaactaaaactcttcctttcctaaaaaacaactacatgtgttgtttcttctcccttctagggtttactcttgcctatggtacgttgtacttaattttctgaaggaataaagcaatttttttggatgctctagaaattttatcatagcttgcttattcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="71211" stop="72175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71511" g_stop="71874" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="375"/>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E335181" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71511" e_stop="71874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAATTTTATCATAGCTTGCTTATTCAC</genome_strand>
        <mrna_strand>AACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAATTTTATCATAGCTTGCTTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543029" ref_strand="+" ref_description="SGN-E543029 [TUS-64-K4]">
      <seq>atttcatcttttttttttgggaatggaaatagtaaagttaataggtactccttttagttttttcacatatagagttatttgggcattaaagctaaagggaataaattatgagtatatagatgaagacatgtccaagaaaagttctttgcttgtaaaatacaatccaattcacaagaaagttccagttctaatccatggtgacaagataatttgtgagtctatggtcatcgttgaatacatcaacgagacgtggaaactgaatccattactttcaactgattcatatgaacgagccacatctcgattttgggctaaatatatcgaagaaaagtcgcatagttcatggaatgtattttgttacactggagaaaagcaacaaaatgctataaaggagagccttgaaatgttcaaaaccatagaggaaaatgctttgggagaaaacaatatattatttggtggtgaaaatattggatttgttgacatagcttttggaggttattctctttggatggaaattattgaagaaattgttgggattaagttacttaatcctcacaattttcctcgtattaacaattggataaaaaaattcaagaagttcaaaacatcaaagataatttacctaatcgtgatgagatgtttgtgtacatgaaaaatgctagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98982" stop="97250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98688" g_stop="98355" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98354" i_stop="97885" i_length="470">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97884" g_stop="97550" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="665" r_length="334" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E543029" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98688" e_stop="98355"/>
          <exon e_start="97884" e_stop="97550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTTTTTTTTTTTTGGGAATGGAAATAGTAAAGTTAATAGGTACTCCTTTTAGTTTTTTCACATATAGAGTTATTTGGGCATTAAAGCTAAAGGGAATAAATTATGAGTATATAGATGAAGACATGTCCAAGAAAAGTTCTTTGCTTGTAAAATACAATCCAATTCACAAGAAAGTTCCAGTTCTAATCCATGGTGACAAGATAATTTGTGAGTCTATGGTCATCGTTGAATACATCAACGAGACGTGGAAACTGAATCCATTACTTTCAACTGATTCATATGAACGAGCCACATCTCGATTTTGGGCTAAATATATCGAAGAAAAGGTATGGTGTTATTATGATCAATATTTTCTATTGTGAAGCACTACTAGCAATTCACAATTTTCTTTTTTTCAATCCCGCTCTATGAGCTCCCACCTTTTTGATTCCTTGGTAACTCGATTCCACAATCTTAGGATTAGAAGTGAACAATGTTTACCATCCGAGCAACTCCCTCTTGTTCCGTAATTAAAAAAAATGAGATTACATATATACCTGTTGAACCCCCCTCCCCCTCATCCCCTCGTACATAAATTTCACGCCTAATTAAATTAAGACACTTAAATTGAAAATGAAACATCATCGACTCTAACGAGTATGCAAATGGTTCTTCTTAGTTAAATTTACTCATCCTTCTTTGTTTCCACTTAGCTAGTACTCAAAACTCACACTGTTAAATTTGTCGAGGATATAATTAAGTAAATAAAATGTGATATTACTTAACTTTTTTTTTTTTTGGTTAAATTGTGATGCAGTCGCATAGTTCATGGAATGTATTTTGTTACACTGGAGAAAAGCAACAAAATGCTATAAAGGAGAGCCTTGAAATGTTCAAAACCATAGAGGAAAATGCTTTGGGAGAAAACAATATATTATTTGGTGGTGAAAATATTGGATTTGTTGACATAGCTTTTGGAGGTTATTCTCTTTGGATGGAAATTATTGAAGAAATTGTTGGGATTAAGTTACTTAATCCTCACAATTTTCCTCGTATTAACAATTGGATAAAAAAATTCAAAGAAGTTCAAACAATCAAAGATAATTTACCTAATCGTGATGAGATGTTTGTGTACATGAAAAATGCTAGGGG</genome_strand>
        <mrna_strand>ATTTCATC-T-TTTT-TTTTTGGGAATGGAAATAGTAAAGTTAATAGGTACTCCTTTTAGTTTTTTCACATATAGAGTTATTTGGGCATTAAAGCTAAAGGGAATAAATTATGAGTATATAGATGAAGACATGTCCAAGAAAAGTTCTTTGCTTGTAAAATACAATCCAATTCACAAGAAAGTTCCAGTTCTAATCCATGGTGACAAGATAATTTGTGAGTCTATGGTCATCGTTGAATACATCAACGAGACGTGGAAACTGAATCCATTACTTTCAACTGATTCATATGAACGAGCCACATCTCGATTTTGGGCTAAATATATCGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATAGTTCATGGAATGTATTTTGTTACACTGGAGAAAAGCAACAAAATGCTATAAAGGAGAGCCTTGAAATGTTCAAAACCATAGAGGAAAATGCTTTGGGAGAAAACAATATATTATTTGGTGGTGAAAATATTGGATTTGTTGACATAGCTTTTGGAGGTTATTCTCTTTGGATGGAAATTATTGAAGAAATTGTTGGGATTAAGTTACTTAATCCTCACAATTTTCCTCGTATTAACAATTGGATAAAAAAATTC-AAGAAGTTCAAAACATCAAAGATAATTTACCTAATCGTGATGAGATGTTTGTGTACATGAAAAATGCTAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302658" ref_strand="+" ref_description="SGN-E302658 [cLEX-1-C24]">
      <seq>tttcatcttttttttttgggaatggaaatagtaaagttaataggtactccttttagttttttcacatatagagttatttgggcattaaagctaaagggaataaattatgagtatatagatgaagacatgtccaagaaaagttctttgcttgtaaaatacaatccaattcacaagaaagttccagttctaatccatggtgacaagataatttgtgagtctatggtcatcgttgaatacatcaacgagacgtggaaactgaatccattactttcaactgattcatatgaacgagccacatctcgattttgggctaaatatatcgaagaaaagtcgcatagttcatggaatgtattttgttacactggagaaaagcaacaaaatgctataaaggagagccttgaaatgttcaaaaccatagaggaaaatgctttgggagaaaacaatatattatttggtggtgaaaatattggatttgttgacatagcttttggaggttattctctttggatggaaattattgaagaaattgttgggattaagttacttaatcctcacaattttcctcgtattaacaattggataaaaaaattcaaagaagttcaaacaatcaaagataatttacctaatcgtgatgagatgtttgtgtacatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="-" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98982" stop="97261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98684" g_stop="98355" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98354" i_stop="97885" i_length="470">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97884" g_stop="97561" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="654" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="-" ref_id="SGN-E302658" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98684" e_stop="98355"/>
          <exon e_start="97884" e_stop="97561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTTTTTTTTTTTGGGAATGGAAATAGTAAAGTTAATAGGTACTCCTTTTAGTTTTTTCACATATAGAGTTATTTGGGCATTAAAGCTAAAGGGAATAAATTATGAGTATATAGATGAAGACATGTCCAAGAAAAGTTCTTTGCTTGTAAAATACAATCCAATTCACAAGAAAGTTCCAGTTCTAATCCATGGTGACAAGATAATTTGTGAGTCTATGGTCATCGTTGAATACATCAACGAGACGTGGAAACTGAATCCATTACTTTCAACTGATTCATATGAACGAGCCACATCTCGATTTTGGGCTAAATATATCGAAGAAAAGGTATGGTGTTATTATGATCAATATTTTCTATTGTGAAGCACTACTAGCAATTCACAATTTTCTTTTTTTCAATCCCGCTCTATGAGCTCCCACCTTTTTGATTCCTTGGTAACTCGATTCCACAATCTTAGGATTAGAAGTGAACAATGTTTACCATCCGAGCAACTCCCTCTTGTTCCGTAATTAAAAAAAATGAGATTACATATATACCTGTTGAACCCCCCTCCCCCTCATCCCCTCGTACATAAATTTCACGCCTAATTAAATTAAGACACTTAAATTGAAAATGAAACATCATCGACTCTAACGAGTATGCAAATGGTTCTTCTTAGTTAAATTTACTCATCCTTCTTTGTTTCCACTTAGCTAGTACTCAAAACTCACACTGTTAAATTTGTCGAGGATATAATTAAGTAAATAAAATGTGATATTACTTAACTTTTTTTTTTTTTGGTTAAATTGTGATGCAGTCGCATAGTTCATGGAATGTATTTTGTTACACTGGAGAAAAGCAACAAAATGCTATAAAGGAGAGCCTTGAAATGTTCAAAACCATAGAGGAAAATGCTTTGGGAGAAAACAATATATTATTTGGTGGTGAAAATATTGGATTTGTTGACATAGCTTTTGGAGGTTATTCTCTTTGGATGGAAATTATTGAAGAAATTGTTGGGATTAAGTTACTTAATCCTCACAATTTTCCTCGTATTAACAATTGGATAAAAAAATTCAAAGAAGTTCAAACAATCAAAGATAATTTACCTAATCGTGATGAGATGTTTGTGTACATGAAA</genome_strand>
        <mrna_strand>TTTCATCTTTTTTTTTTGGGAATGGAAATAGTAAAGTTAATAGGTACTCCTTTTAGTTTTTTCACATATAGAGTTATTTGGGCATTAAAGCTAAAGGGAATAAATTATGAGTATATAGATGAAGACATGTCCAAGAAAAGTTCTTTGCTTGTAAAATACAATCCAATTCACAAGAAAGTTCCAGTTCTAATCCATGGTGACAAGATAATTTGTGAGTCTATGGTCATCGTTGAATACATCAACGAGACGTGGAAACTGAATCCATTACTTTCAACTGATTCATATGAACGAGCCACATCTCGATTTTGGGCTAAATATATCGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATAGTTCATGGAATGTATTTTGTTACACTGGAGAAAAGCAACAAAATGCTATAAAGGAGAGCCTTGAAATGTTCAAAACCATAGAGGAAAATGCTTTGGGAGAAAACAATATATTATTTGGTGGTGAAAATATTGGATTTGTTGACATAGCTTTTGGAGGTTATTCTCTTTGGATGGAAATTATTGAAGAAATTGTTGGGATTAAGTTACTTAATCCTCACAATTTTCCTCGTATTAACAATTGGATAAAAAAATTCAAAGAAGTTCAAACAATCAAAGATAATTTACCTAATCGTGATGAGATGTTTGTGTACATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364184" ref_strand="+" ref_description="SGN-E364184 [cLPP-16-P11]">
      <seq>ggaaaagaaaaaaaacttacaaaatgagttcttcctacatcaaatcaccatttattttattgatcatattattcataaacattttaaatcttaaaaatgttgttgcaagtccattccatattcaagttatgaataatattgatccaactagatttccctttaatagtattaaacttcattgcgcttctaaagataatgatatgggatttcacgacattactccaaataacaaatttgaatggtcatttaaagagggatatttttctaacacattatttttttgtcatttttggtggggattaaaagaaagagctttcgaagtgtttaatgtcttccatggatgtatcaaaaatgcaccactcaatcccgatactcgtttatgtaaatggacaataacagatataggattttttcttgaagatgacaaaggaaaaaaatatattgcttatgcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100025" stop="101022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100323" g_stop="100778" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E364184" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100323" e_stop="100778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAAACTTAAAAAATGTGTTCTTCCTACATCAAATCACCCTTTATTTTATTGATCATATTATTCATAAATATTTTAAATTTAAAAAATGTTGTTGCAAGTCCATTCCATATTCAAGTTATGAATAATATTGATCCAACTAGATTTCCCTTTAATAGTATTAAACTTCATTGCGCTTCTAAAGATAATGATATGGGATTTCATGACATTACTCCAAATAACAAATTTGAATGGTCGTTTAAAGAAGGATATTTTTCTAACACATTATTTTTTTGTCATTTTTGGTGGGGATTAAAAGAAAGAGCTTTCGAAGTGTTTAATGTCTTCCATGGATGTATCAAAAATGCACCACTCAATCCCGATACTCGTTTATGTAAATGGACAATAACAGATATAGGATTTTTTCTGGAAGATGATAAAGGAAAGAAATATATTGCTTATGCTTGGG</genome_strand>
        <mrna_strand>GGAAAAGAAAAAAAACTTACAAAATGAGTTCTTCCTACATCAAATCACCATTTATTTTATTGATCATATTATTCATAAACATTTTAAATCTTAAAAATGTTGTTGCAAGTCCATTCCATATTCAAGTTATGAATAATATTGATCCAACTAGATTTCCCTTTAATAGTATTAAACTTCATTGCGCTTCTAAAGATAATGATATGGGATTTCACGACATTACTCCAAATAACAAATTTGAATGGTCATTTAAAGAGGGATATTTTTCTAACACATTATTTTTTTGTCATTTTTGGTGGGGATTAAAAGAAAGAGCTTTCGAAGTGTTTAATGTCTTCCATGGATGTATCAAAAATGCACCACTCAATCCCGATACTCGTTTATGTAAATGGACAATAACAGATATAGGATTTTTTCTTGAAGATGACAAAGGAAAAAAATATATTGCTTATGCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547649" ref_strand="+" ref_description="SGN-E547649 [TUS-71-K6]">
      <seq>aaaagaaaaaaaacttacaaaatgagttcttcctacatcaaatcaccatttattttattgatcatattattcataaacattttaaatcttaaaaatgttgttgcaagtccattccatattcaagttatgaataatattgatccaactagatttccctttaatagtattaaacttcattgcgcttctaaagataatgatatgggatttcacgacattactccaaataacaaatttgaatggtcatttaaagagggatatttttctaacacattatttttttgtcatttttggtggggattaaaagaaagagctttcgaagtgtttaatgtcttccatggatgtatcaaaaatgcaccactcaatcccgatactcgtttatgtaaatggacaataacagatataggattttttcttgaagatgacaaaggaaaaaaatatattgcttatgcttgggagcctcttaaaaagtaaaaatagttagttattattcgctctgattcttaatttgtttgggattgtgaagcgtgtgtcttttttattttgagttttgaatattcttatatggtgtacattagtgaaggaataaacgcattattatatataatgcgcagaggaaaaaatctagatcttgtatatatactaagaaatttattaaatatctataaatattttgttttaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0183M06-IX8WP/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0183M06.1" temp_strand="+" temp_description="C12HBa0183M06.1  AC216400.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0183M06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="100026" stop="101022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100325" g_stop="101016" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0183M06.1" gen_strand="+" ref_id="SGN-E547649" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0183M06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100325" e_stop="101016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAACTTAAAAAATGTGTTCTTCCTACATCAAATCACCCTTTATTTTATTGATCATATTATTCATAAATATTTTAAATTTAAAAAATGTTGTTGCAAGTCCATTCCATATTCAAGTTATGAATAATATTGATCCAACTAGATTTCCCTTTAATAGTATTAAACTTCATTGCGCTTCTAAAGATAATGATATGGGATTTCATGACATTACTCCAAATAACAAATTTGAATGGTCGTTTAAAGAAGGATATTTTTCTAACACATTATTTTTTTGTCATTTTTGGTGGGGATTAAAAGAAAGAGCTTTCGAAGTGTTTAATGTCTTCCATGGATGTATCAAAAATGCACCACTCAATCCCGATACTCGTTTATGTAAATGGACAATAACAGATATAGGATTTTTTCTGGAAGATGATAAAGGAAAGAAATATATTGCTTATGCTTGGGAGCCTCTTAAAAAGTAAAAATAGTTAGTTATTATTCGCTCTGATCCCTAATTTGTTTGGGATTGTGAAGCGTGTGTCTTTTTTTTTTTTTGAGTTTTAAATATTCTTATATGGTGTACATTATTGAAGGAATAAACGCATTGTTATATGTAATGCGCATAGG-GAAAATCTAGATCCTGTATATATACTAAGAAATTTATTTAATATCTATAAATATTTGATAATTATAAGGTGCGCCG</genome_strand>
        <mrna_strand>AAAAGAAAAAAAACTTACAAAATGAGTTCTTCCTACATCAAATCACCATTTATTTTATTGATCATATTATTCATAAACATTTTAAATCTTAAAAATGTTGTTGCAAGTCCATTCCATATTCAAGTTATGAATAATATTGATCCAACTAGATTTCCCTTTAATAGTATTAAACTTCATTGCGCTTCTAAAGATAATGATATGGGATTTCACGACATTACTCCAAATAACAAATTTGAATGGTCATTTAAAGAGGGATATTTTTCTAACACATTATTTTTTTGTCATTTTTGGTGGGGATTAAAAGAAAGAGCTTTCGAAGTGTTTAATGTCTTCCATGGATGTATCAAAAATGCACCACTCAATCCCGATACTCGTTTATGTAAATGGACAATAACAGATATAGGATTTTTTCTTGAAGATGACAAAGGAAAAAAATATATTGCTTATGCTTGGGAGCCTCTTAAAAAGTAAAAATAGTTAGTTATTATTCGCTCTGATTCTTAATTTGTTTGGGATTGTGAAGCGTGTGTC--TTTTTTATTTTGAGTTTTGAATATTCTTATATGGTGTACATTAGTGAAGGAATAAACGCATTATTATATATAATGCGCAGAGGAAAAAATCTAGATCTTGTATATATACTAAGAAATTTATTAAATATCTATAAATATTTTGT-TTTAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>168</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1" PGL_stop="480"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1" e_stop="480"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="1" e_stop="480" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1" stop="480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTGCAACCAAGTTGCTCGCAGAACACTCCAATCTACCGTGAAATACAGAAGTGCATGGGAATCATCAGAAACCAAATTCTGTCATTGGTACCAACGTAGACCATGTGTAAGTTGCACGGACTCTTCACTTTCGATGCCGTACCCGTATCGGATTCTCTAAAAAAGTACACTACATTTGGAGAACCTGCCACACACCCGTTGACATTTTTGAAAGTCCGAGCAACATGTTTATCAACTCTAGTCTTTTTACATCTTGTAAACTCAGTATGCAGATAATAACCTTATTCATCGTTCAGCTCTTAGACCAATTCAAAACTTAATTAACTGCCTCAATGGTGATTTCTGTTTTTCTGTTCCCCTCCTAATGGAGAGTGGTATTGTTGAAAATCAGTATCTGCTACTACCTGTTGGATTGCAAGTTAAAAGAGGCATGAAATGATGAATTTTGTTTTTTGGACTATTCCTATGACTTGAGC</gDNA_template>
            <first_frame> K  L  A  T  K  L  L  A  E  H  S  N  L  P  *  N  T  E  V  H  G  N  H  Q  K  P  N  S  V  I  G  T  N  V  D  H  V  *  V  A  R  T  L  H  F  R  C  R  T  R  I  G  F  S  K  K  V  H  Y  I  W  R  T  C  H  T  P  V  D  I  F  E  S  P  S  N  M  F  I  N  S  S  L  F  T  S  C  K  L  S  M  Q  I  I  T  L  F  I  V  Q  L  L  D  Q  F  K  T  *  L  T  A  S  M  V  I  S  V  F  L  F  P  S  *  W  R  V  V  L  L  K  I  S  I  C  Y  Y  L  L  D  C  K  L  K  E  A  *  N  D  E  F  C  F  L  D  Y  S  Y  D  L  S </first_frame>
            <second_frame>  S  L  Q  P  S  C  S  Q  N  T  P  I  Y  R  E  I  Q  K  C  M  G  I  I  R  N  Q  I  L  S  L  V  P  T  *  T  M  C  K  L  H  G  L  F  T  F  D  A  V  P  V  S  D  S  L  K  K  Y  T  T  F  G  E  P  A  T  H  P  L  T  F  L  K  V  R  A  T  C  L  S  T  L  V  F  L  H  L  V  N  S  V  C  R  *  *  P  Y  S  S  F  S  S  *  T  N  S  K  L  N  *  L  P  Q  W  *  F  L  F  F  C  S  P  P  N  G  E  W  Y  C  *  K  S  V  S  A  T  T  C  W  I  A  S  *  K  R  H  E  M  M  N  F  V  F  W  T  I  P  M  T  *   </second_frame>
            <third_frame>   A  C  N  Q  V  A  R  R  T  L  Q  S  T  V  K  Y  R  S  A  W  E  S  S  E  T  K  F  C  H  W  Y  Q  R  R  P  C  V  S  C  T  D  S  S  L  S  M  P  Y  P  Y  R  I  L  *  K  S  T  L  H  L  E  N  L  P  H  T  R  *  H  F  *  K  S  E  Q  H  V  Y  Q  L  *  S  F  Y  I  L  *  T  Q  Y  A  D  N  N  L  I  H  R  S  A  L  R  P  I  Q  N  L  I  N  C  L  N  G  D  F  C  F  S  V  P  L  L  M  E  S  G  I  V  E  N  Q  Y  L  L  L  P  V  G  L  Q  V  K  R  G  M  K  *  *  I  L  F  F  G  L  F  L  *  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115" stop="324"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VARTLHFRCRTRIGFSKKVHYIWRTCHTPVDIFESPSNMFINSSLFTSCKLSMQIITLFIVQLLDQFKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11106" PGL_stop="6553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11090" e_stop="10441"/>
            <exon e_start="8829" e_stop="8686"/>
            <exon e_start="7860" e_stop="7696"/>
            <exon e_start="6884" e_stop="6553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.935" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="11090" e_stop="10441" e_length="650"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10440" i_stop="8830" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8829" e_stop="8686" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.935" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8685" i_stop="7861" i_length="825"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7860" e_stop="7696" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="7695" i_stop="6885" i_length="811"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6884" e_stop="6553" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="10513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11088" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11086" stop="10741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="10581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11083" stop="10557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11079" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11079" stop="10525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="10562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11071" stop="10563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11015" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11010" stop="10491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10994" stop="10441"/>
              <exon start="8829" stop="8686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10981" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10962" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10898" stop="10441"/>
              <exon start="8829" stop="8692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10813" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10743" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10743" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10701" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10652" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10610" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10603" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10589" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261412" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10589" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261990" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10589" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10571" stop="10441"/>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8829" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8794" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8794" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8717" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255810" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8707" stop="8686"/>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256339" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254455" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258058" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7860" stop="7696"/>
              <exon start="6884" stop="6588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7731" stop="7696"/>
              <exon start="6884" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259131" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG : GTTGAATCTGAGTACCTCCCTCTCTATAGCAACTATGGAATTGGTCTTACCACATGGAGTCCTCTCGCTTCAGGCGTTCTGACTGGAAAATATACCTCAGGGAACATTCCACCAGACAGTCGATTTGCACTGGAAAATTACAAG : AATCTTGCCAGCAGATCCTTGGTGGATGATGTGCTGAGGAAAGTAAATGGATTGAAACCAATTGCTGAGGAACTAGGTGTACCTCTGCCTCAACTGGCAATTGCCTGGTGTGCTGCAAATCCTAATGTCTCATCTGTTATTACTGGTGCCACCAAAGAGTATCAG : ATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAAGTTGCT</gDNA_template>
            <first_frame> E  T  *  T  L  S  Q  I  L  L  K  R  P  I  F  F  P  F  S  *  F  L  I  S  L  K  K  C  K  C  N  T  R  I  *  A  D  Q  V  *  R  Y  H  S  S  L  M  E  H  G  L  P  L  E  I  N  L  M  L  K  K  Q  K  P  F  Y  S  V  V  V  T  M  V  S  I  S  L  I  M  L  R  F  M  L  M  A  E  Q  K  K  S  W  V  K  R  F  V  N  L  G  G  K  D  R  T  L  L  C  Q  Q  R  Y  F  G  V  V  L  V  Q  M  I  K  G  F  Q  E  N  I  *  L  K  E  Q  K  L  H  *  R  D  L  I  W  I  M  *  I  *  S  I  V  I  G  L  I  Q  V  H  L  L  K  K  L  L  G  L  *  T  M  *  L  I  K  G  G  L  F  I  G  V  Q  V  N  G  Q  L  S  R  L  L  K  H  G  G  L  L  K  D  W  I  L  L  V  P  L  L  S  S  L  S  I  T  C  C  L  G  I  R :   L  N  L  S  T  S  L  S  I  A  T  M  E  L  V  L  P  H  G  V  L  S  L  Q  A  F  *  L  E  N  I  P  Q  G  T  F  H  Q  T  V  D  L  H  W  K  I  T  R :   I  L  P  A  D  P  W  W  M  M  C  *  G  K  *  M  D  *  N  Q  L  L  R  N  *  V  Y  L  C  L  N  W  Q  L  P  G  V  L  Q  I  L  M  S  H  L  L  L  L  V  P  P  K  S  I  R :   F  K  R  T  *  K  L  S  M  *  F  Q  C  *  H  L  L  *  W  R  R  L  K  L  L  F  K  A  N  R  S  A  K  I  H  I  G  R  Q  I  C  E  I  H  *  *  F  K  R  A  V  L  F  K  T  Q  F  V  F  S  S  L  C  I  C  I  P  F  C  F  A  I  F  E  D  T  Y  E  S  W  C  F  F  *  T  K  K  P  L  M  M  V  N  F  L  L  F  F  K  W  M  N  D  Y  I  G  F  *  S  C  </first_frame>
            <second_frame>  K  L  K  L  Y  H  K  F  S  *  K  D  Q  S  F  S  P  F  L  D  S  *  S  P  S  K  N  A  N  A  I  Q  E  F  R  Q  I  R  S  K  G  I  T  A  L  L  W  S  M  G  Y  L  W  K  S  T  *  C  *  R  S  K  N  P  F  T  V  L  S  *  P  W  C  Q  F  L  *  *  C  *  G  L  C  *  W  Q  S  R  R  N  H  G  S  S  D  S  *  T  W  V  E  K  I  G  H  C  C  V  N  K  D  I  L  G  W  F  W  S  K  *  *  R  A  F  K  K  T  Y  N  *  R  N  K  S  F  I  E  E  T  *  Y  G  L  C  R  S  D  L  L  S  *  A  *  Y  K  Y  T  Y  *  R  N  C  *  G  Y  E  L  C  D  *  *  R  V  G  F  L  L  G  Y  K  *  M  V  S  S  A  D  Y  *  S  M  G  G  C  S  K  I  G  S  C  W  S  H  C  *  A  A  *  V  *  L  V  V  *  A  *   : G  *  I  *  V  P  P  S  L  *  Q  L  W  N  W  S  Y  H  M  E  S  S  R  F  R  R  S  D  W  K  I  Y  L  R  E  H  S  T  R  Q  S  I  C  T  G  K  L  Q   : E  S  C  Q  Q  I  L  G  G  *  C  A  E  E  S  K  W  I  E  T  N  C  *  G  T  R  C  T  S  A  S  T  G  N  C  L  V  C  C  K  S  *  C  L  I  C  Y  Y  W  C  H  Q  R  V  S   : D  S  R  E  H  E  S  Y  Q  C  D  S  N  V  N  T  C  C  D  G  E  D  *  S  Y  C  S  K  Q  T  E  A  P  R  F  I  *  V  D  K  F  V  R  S  I  S  S  S  K  E  Q  C  C  S  R  L  S  L  F  F  H  H  Y  V  F  A  S  P  F  A  L  P  Y  L  K  T  L  M  R  V  G  V  F  S  E  P  K  N  L  *  *  W  *  I  F  Y  F  S  L  S  G  *  M  I  I  L  A  F  E  V  A </second_frame>
            <third_frame>   N  L  N  S  I  T  N  S  L  K  K  T  N  L  F  P  L  F  L  I  L  D  L  P  Q  K  M  Q  M  Q  Y  K  N  L  G  R  S  G  L  K  V  S  Q  L  S  Y  G  A  W  V  T  F  G  N  Q  L  D  V  K  E  A  K  T  L  L  Q  C  C  R  D  H  G  V  N  F  F  D  N  A  E  V  Y  A  N  G  R  A  E  E  I  M  G  Q  A  I  R  E  L  G  W  K  R  S  D  I  V  V  S  T  K  I  F  W  G  G  S  G  P  N  D  K  G  L  S  R  K  H  I  I  E  G  T  K  A  S  L  K  R  L  D  M  D  Y  V  D  L  I  Y  C  H  R  P  D  T  S  T  P  I  E  E  T  V  R  A  M  N  Y  V  I  D  K  G  W  A  F  Y  W  G  T  S  E  W  S  A  Q  Q  I  T  E  A  W  G  V  A  Q  R  L  D  L  V  G  P  I  V  E  Q  P  E  Y  N  L  L  S  R  H  K  :  V  E  S  E  Y  L  P  L  Y  S  N  Y  G  I  G  L  T  T  W  S  P  L  A  S  G  V  L  T  G  K  Y  T  S  G  N  I  P  P  D  S  R  F  A  L  E  N  Y  K  :  N  L  A  S  R  S  L  V  D  D  V  L  R  K  V  N  G  L  K  P  I  A  E  E  L  G  V  P  L  P  Q  L  A  I  A  W  C  A  A  N  P  N  V  S  S  V  I  T  G  A  T  K  E  Y  Q  :  I  Q  E  N  M  K  A  I  N  V  I  P  M  L  T  P  A  V  M  E  K  I  E  A  I  V  Q  S  K  P  K  R  Q  D  S  Y  R  *  T  N  L  *  D  P  L  V  V  Q  K  S  S  V  V  Q  D  S  V  C  F  F  I  I  M  Y  L  H  P  L  L  L  C  H  I  *  R  H  L  *  E  L  V  F  F  L  N  Q  K  T  F  N  D  G  E  F  S  T  F  L  *  V  D  E  *  L  Y  W  L  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11088" stop="10441"/>
                    <exon start="8829" stop="8686"/>
                    <exon start="7860" stop="7696"/>
                    <exon start="6884" stop="6771"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLNSITNSLKKTNLFPLFLILDLPQKMQMQYKNLGRSGLKVSQLSYGAWVTFGNQLDVKEAKTLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHIIEGTKASLKRLDMDYVDLIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGVAQRLDLVGPIVEQPEYNLLSRHKVESEYLPLYSNYGIGLTTWSPLASGVLTGKYTSGNIPPDSRFALENYKNLASRSLVDDVLRKVNGLKPIAEELGVPLPQLAIAWCAANPNVSSVITGATKEYQIQENMKAINVIPMLTPAVMEKIEAIVQSKPKRQDSYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11106" e_stop="10441"/>
            <exon e_start="10363" e_stop="10349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="0.998"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="11106" e_stop="10441" e_length="666"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="10440" i_stop="10364" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.400">
            <gDNA_exon_boundary e_start="10363" e_stop="10349" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11106" stop="10441"/>
              <exon start="10363" stop="10349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11090" stop="10513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11086" stop="10741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11085" stop="10581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11083" stop="10557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11079" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11079" stop="10525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="10562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11071" stop="10563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11010" stop="10491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTACACACCAAAGAAACTTAAACTCTATCACAAATTCTCTTAAAAAGACCAATCTTTTTCCCCTTTTCTTGATTCTTGATCTCCCTCAAAAAATGCAAATGCAATACAAGAATTTAGGCAGATCAGGTCTAAAGGTATCACAGCTCTCTTATGGAGCATGGGTTACCTTTGGAAATCAACTTGATGTTAAAGAAGCAAAAACCCTTTTACAGTGTTGTCGTGACCATGGTGTCAATTTCTTTGATAATGCTGAGGTTTATGCTAATGGCAGAGCAGAAGAAATCATGGGTCAAGCGATTCGTGAACTTGGGTGGAAAAGATCGGACATTGTTGTGTCAACAAAGATATTTTGGGGTGGTTCTGGTCCAAATGATAAAGGGCTTTCAAGAAAACATATAATTGAAGGAACAAAAGCTTCATTGAAGAGACTTGATATGGATTATGTAGATCTGATCTATTGTCATAGGCCTGATACAAGTACACCTATTGAAGAAACTGTTAGGGCTATGAACTATGTGATTGATAAAGGGTGGGCTTTTTATTGGGGTACAAGTGAATGGTCAGCTCAGCAGATTACTGAAGCATGGGGGGTTGCTCAAAGATTGGATCTTGTTGGTCCCATTGTTGAGCAGCCTGAGTATAACTTGTTGTCTAGGCATAAG : TATGATGATATGAAA</gDNA_template>
            <first_frame> *  S  T  H  Q  R  N  L  N  S  I  T  N  S  L  K  K  T  N  L  F  P  L  F  L  I  L  D  L  P  Q  K  M  Q  M  Q  Y  K  N  L  G  R  S  G  L  K  V  S  Q  L  S  Y  G  A  W  V  T  F  G  N  Q  L  D  V  K  E  A  K  T  L  L  Q  C  C  R  D  H  G  V  N  F  F  D  N  A  E  V  Y  A  N  G  R  A  E  E  I  M  G  Q  A  I  R  E  L  G  W  K  R  S  D  I  V  V  S  T  K  I  F  W  G  G  S  G  P  N  D  K  G  L  S  R  K  H  I  I  E  G  T  K  A  S  L  K  R  L  D  M  D  Y  V  D  L  I  Y  C  H  R  P  D  T  S  T  P  I  E  E  T  V  R  A  M  N  Y  V  I  D  K  G  W  A  F  Y  W  G  T  S  E  W  S  A  Q  Q  I  T  E  A  W  G  V  A  Q  R  L  D  L  V  G  P  I  V  E  Q  P  E  Y  N  L  L  S  R  H  K  :  Y  D  D  M  K </first_frame>
            <second_frame>  N  L  H  T  K  E  T  *  T  L  S  Q  I  L  L  K  R  P  I  F  F  P  F  S  *  F  L  I  S  L  K  K  C  K  C  N  T  R  I  *  A  D  Q  V  *  R  Y  H  S  S  L  M  E  H  G  L  P  L  E  I  N  L  M  L  K  K  Q  K  P  F  Y  S  V  V  V  T  M  V  S  I  S  L  I  M  L  R  F  M  L  M  A  E  Q  K  K  S  W  V  K  R  F  V  N  L  G  G  K  D  R  T  L  L  C  Q  Q  R  Y  F  G  V  V  L  V  Q  M  I  K  G  F  Q  E  N  I  *  L  K  E  Q  K  L  H  *  R  D  L  I  W  I  M  *  I  *  S  I  V  I  G  L  I  Q  V  H  L  L  K  K  L  L  G  L  *  T  M  *  L  I  K  G  G  L  F  I  G  V  Q  V  N  G  Q  L  S  R  L  L  K  H  G  G  L  L  K  D  W  I  L  L  V  P  L  L  S  S  L  S  I  T  C  C  L  G  I  S :   M  M  I  *   </second_frame>
            <third_frame>   I  Y  T  P  K  K  L  K  L  Y  H  K  F  S  *  K  D  Q  S  F  S  P  F  L  D  S  *  S  P  S  K  N  A  N  A  I  Q  E  F  R  Q  I  R  S  K  G  I  T  A  L  L  W  S  M  G  Y  L  W  K  S  T  *  C  *  R  S  K  N  P  F  T  V  L  S  *  P  W  C  Q  F  L  *  *  C  *  G  L  C  *  W  Q  S  R  R  N  H  G  S  S  D  S  *  T  W  V  E  K  I  G  H  C  C  V  N  K  D  I  L  G  W  F  W  S  K  *  *  R  A  F  K  K  T  Y  N  *  R  N  K  S  F  I  E  E  T  *  Y  G  L  C  R  S  D  L  L  S  *  A  *  Y  K  Y  T  Y  *  R  N  C  *  G  Y  E  L  C  D  *  *  R  V  G  F  L  L  G  Y  K  *  M  V  S  S  A  D  Y  *  S  M  G  G  C  S  K  I  G  S  C  W  S  H  C  *  A  A  *  V  *  L  V  V  *  A  *   : V  *  *  Y  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11103" stop="10441"/>
                    <exon start="10363" stop="10349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STHQRNLNSITNSLKKTNLFPLFLILDLPQKMQMQYKNLGRSGLKVSQLSYGAWVTFGNQLDVKEAKTLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHIIEGTKASLKRLDMDYVDLIYCHRPDTSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGVAQRLDLVGPIVEQPEYNLLSRHKYDDMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6886" e_stop="6559"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6886" e_stop="6559" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6886" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6885" stop="6559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226288" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTCAAGAGAACATGAAAGCTATCAATGTGATTCCAATGTTAACACCTGCTGTGATGGAGAAGATTGAAGCTATTGTTCAAAGCAAACCGAAGCGCCAAGATTCATATAGGTAGACAAATTTGTGAGATCCATTAGTAGTTCAAAAGAGCAGTGTTGTTCAAGACTCAGTTTGTTTTTTCATCATTATGTATTTGCATCCCCTTTTGCTTTGCCATATTTGAAGACACTTATGAGAGTTGGTGTTTTTTCTGAACCAAAAAACCTTTAATGATGGTGAATTTTCTACTTTTCTTTAAGTGGATGAATGATTATATTGGCTTTTGAA</gDNA_template>
            <first_frame> R  F  K  R  T  *  K  L  S  M  *  F  Q  C  *  H  L  L  *  W  R  R  L  K  L  L  F  K  A  N  R  S  A  K  I  H  I  G  R  Q  I  C  E  I  H  *  *  F  K  R  A  V  L  F  K  T  Q  F  V  F  S  S  L  C  I  C  I  P  F  C  F  A  I  F  E  D  T  Y  E  S  W  C  F  F  *  T  K  K  P  L  M  M  V  N  F  L  L  F  F  K  W  M  N  D  Y  I  G  F  *  </first_frame>
            <second_frame>  D  S  R  E  H  E  S  Y  Q  C  D  S  N  V  N  T  C  C  D  G  E  D  *  S  Y  C  S  K  Q  T  E  A  P  R  F  I  *  V  D  K  F  V  R  S  I  S  S  S  K  E  Q  C  C  S  R  L  S  L  F  F  H  H  Y  V  F  A  S  P  F  A  L  P  Y  L  K  T  L  M  R  V  G  V  F  S  E  P  K  N  L  *  *  W  *  I  F  Y  F  S  L  S  G  *  M  I  I  L  A  F  E </second_frame>
            <third_frame>   I  Q  E  N  M  K  A  I  N  V  I  P  M  L  T  P  A  V  M  E  K  I  E  A  I  V  Q  S  K  P  K  R  Q  D  S  Y  R  *  T  N  L  *  D  P  L  V  V  Q  K  S  S  V  V  Q  D  S  V  C  F  F  I  I  M  Y  L  H  P  L  L  L  C  H  I  *  R  H  L  *  E  L  V  F  F  L  N  Q  K  T  F  N  D  G  E  F  S  T  F  L  *  V  D  E  *  L  Y  W  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0183M06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10671" PGL_stop="11047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10671" e_stop="11047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="10671" e_stop="11047" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10671" stop="11047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10757" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTCTCTTCAATGAAGCTTTTGTTCCTTCAATTATATGTTTTCTTGAAAGCCCTTTATCATTTGGACCAGAACCACCCCAAAATATCTTTGTTGACACAACAATGTCCGATCTTTTCCACCCAAGTTCACGAATCGCTTGACCCATGATTTCTTCTGCTCTGCCATTAGCATAAACCTCAGCATTATCAAAGAAATTGACACCATGGTCACGACAACACTGTAAAAGGGTTTTTGCTTCTTTAACATCAAGTTGATTTCCAAAGGTAACCCATGCTCCATAAGAGAGCTGTGATACCTTTAGACCTGATCTGCCTAAATTCTTGTATTGCATTTGCATTTTTTGAGGGAGATCAAGAATCAAGAAAAGGGGAAAA</gDNA_template>
            <first_frame> Q  V  S  S  M  K  L  L  F  L  Q  L  Y  V  F  L  K  A  L  Y  H  L  D  Q  N  H  P  K  I  S  L  L  T  Q  Q  C  P  I  F  S  T  Q  V  H  E  S  L  D  P  *  F  L  L  L  C  H  *  H  K  P  Q  H  Y  Q  R  N  *  H  H  G  H  D  N  T  V  K  G  F  L  L  L  *  H  Q  V  D  F  Q  R  *  P  M  L  H  K  R  A  V  I  P  L  D  L  I  C  L  N  S  C  I  A  F  A  F  F  E  G  D  Q  E  S  R  K  G  E   </first_frame>
            <second_frame>  K  S  L  Q  *  S  F  C  S  F  N  Y  M  F  S  *  K  P  F  I  I  W  T  R  T  T  P  K  Y  L  C  *  H  N  N  V  R  S  F  P  P  K  F  T  N  R  L  T  H  D  F  F  C  S  A  I  S  I  N  L  S  I  I  K  E  I  D  T  M  V  T  T  T  L  *  K  G  F  C  F  F  N  I  K  L  I  S  K  G  N  P  C  S  I  R  E  L  *  Y  L  *  T  *  S  A  *  I  L  V  L  H  L  H  F  L  R  E  I  K  N  Q  E  K  G  K  </second_frame>
            <third_frame>   S  L  F  N  E  A  F  V  P  S  I  I  C  F  L  E  S  P  L  S  F  G  P  E  P  P  Q  N  I  F  V  D  T  T  M  S  D  L  F  H  P  S  S  R  I  A  *  P  M  I  S  S  A  L  P  L  A  *  T  S  A  L  S  K  K  L  T  P  W  S  R  Q  H  C  K  R  V  F  A  S  L  T  S  S  *  F  P  K  V  T  H  A  P  *  E  S  C  D  T  F  R  P  D  L  P  K  F  L  Y  C  I  C  I  F  *  G  R  S  R  I  K  K  R  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0183M06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="16265" PGL_stop="17067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16265" e_stop="17067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16265" e_stop="17067" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16265" stop="16980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16265" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16267" stop="17067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16288" stop="16780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16302" stop="16977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16324" stop="16980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712092" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACCACAATTCACCAACCTTAGACTATTTTTTGTTTTGTTTGTTTTTGTGTGTGTAAGGAGATAGAAACATAAGTTTTTGGAGTAAACAAAATGGCAAATTGGTCCATAATATTCATATTTGCACTAGTACTAGTCCATGCCAATGCAAGAAATATTCCTGAGGTTCAAAATGTAAACACTAAGACTTTAAGTACTAATTCTCCAACACCAAGCAAAATTGGAGGACTTAATGACAACAAAAATTTTATAACATATGGTGGCATAGGTGGTTGTTCCGGAATTGGTGGAGTAGGTGGGGTGTTGCCAATACTTGGCGGTGCCGTTGGCGGCGTTGGTGGTGCCGCCGGTGGTGTTGGTGGAGTCGGTGGCGGTCTTGGTGGTGCCGGGTTCAAAGGGATTGGCGGCGGTGTTGGCGGTGCCGGAGGTGTTGGTGGTGGTGGACTAGGTGTTGGTGGTGGAATTGGTGGTTATAAAGGTGTAGGAGTTATTATTCCTTGAAGTGTTTTACTATATAGTGTTGGTTAATATTTTTATTTTGTTATTGCATGCATGTTATCCTAGTACTTGTGTTGTTTGAAGTGTCTAGTATTTAAATTTTATGTTTTTAATTAAAAGTGTTAGTATTACTATTATTTCCTAGATCATTGTGTTATCTAGTATTTTATTTCCAAGTTATTGTGTAATAATTAAGGATATAATAGTATAGTTTGCTTAATTAGATTGTGTTAATTATGTTCCCAATTTCATTGGGCTTGTTGGTTTAACTTGTTTTTTTTCCCAATAATTAATTCTATCCATTTC</gDNA_template>
            <first_frame> I  P  Q  F  T  N  L  R  L  F  F  V  L  F  V  F  V  C  V  R  R  *  K  H  K  F  L  E  *  T  K  W  Q  I  G  P  *  Y  S  Y  L  H  *  Y  *  S  M  P  M  Q  E  I  F  L  R  F  K  M  *  T  L  R  L  *  V  L  I  L  Q  H  Q  A  K  L  E  D  L  M  T  T  K  I  L  *  H  M  V  A  *  V  V  V  P  E  L  V  E  *  V  G  C  C  Q  Y  L  A  V  P  L  A  A  L  V  V  P  P  V  V  L  V  E  S  V  A  V  L  V  V  P  G  S  K  G  L  A  A  V  L  A  V  P  E  V  L  V  V  V  D  *  V  L  V  V  E  L  V  V  I  K  V  *  E  L  L  F  L  E  V  F  Y  Y  I  V  L  V  N  I  F  I  L  L  L  H  A  C  Y  P  S  T  C  V  V  *  S  V  *  Y  L  N  F  M  F  L  I  K  S  V  S  I  T  I  I  S  *  I  I  V  L  S  S  I  L  F  P  S  Y  C  V  I  I  K  D  I  I  V  *  F  A  *  L  D  C  V  N  Y  V  P  N  F  I  G  L  V  G  L  T  C  F  F  S  Q  *  L  I  L  S  I   </first_frame>
            <second_frame>  Y  H  N  S  P  T  L  D  Y  F  L  F  C  L  F  L  C  V  *  G  D  R  N  I  S  F  W  S  K  Q  N  G  K  L  V  H  N  I  H  I  C  T  S  T  S  P  C  Q  C  K  K  Y  S  *  G  S  K  C  K  H  *  D  F  K  Y  *  F  S  N  T  K  Q  N  W  R  T  *  *  Q  Q  K  F  Y  N  I  W  W  H  R  W  L  F  R  N  W  W  S  R  W  G  V  A  N  T  W  R  C  R  W  R  R  W  W  C  R  R  W  C  W  W  S  R  W  R  S  W  W  C  R  V  Q  R  D  W  R  R  C  W  R  C  R  R  C  W  W  W  W  T  R  C  W  W  W  N  W  W  L  *  R  C  R  S  Y  Y  S  L  K  C  F  T  I  *  C  W  L  I  F  L  F  C  Y  C  M  H  V  I  L  V  L  V  L  F  E  V  S  S  I  *  I  L  C  F  *  L  K  V  L  V  L  L  L  F  P  R  S  L  C  Y  L  V  F  Y  F  Q  V  I  V  *  *  L  R  I  *  *  Y  S  L  L  N  *  I  V  L  I  M  F  P  I  S  L  G  L  L  V  *  L  V  F  F  P  N  N  *  F  Y  P  F  </second_frame>
            <third_frame>   T  T  I  H  Q  P  *  T  I  F  C  F  V  C  F  C  V  C  K  E  I  E  T  *  V  F  G  V  N  K  M  A  N  W  S  I  I  F  I  F  A  L  V  L  V  H  A  N  A  R  N  I  P  E  V  Q  N  V  N  T  K  T  L  S  T  N  S  P  T  P  S  K  I  G  G  L  N  D  N  K  N  F  I  T  Y  G  G  I  G  G  C  S  G  I  G  G  V  G  G  V  L  P  I  L  G  G  A  V  G  G  V  G  G  A  A  G  G  V  G  G  V  G  G  G  L  G  G  A  G  F  K  G  I  G  G  G  V  G  G  A  G  G  V  G  G  G  G  L  G  V  G  G  G  I  G  G  Y  K  G  V  G  V  I  I  P  *  S  V  L  L  Y  S  V  G  *  Y  F  Y  F  V  I  A  C  M  L  S  *  Y  L  C  C  L  K  C  L  V  F  K  F  Y  V  F  N  *  K  C  *  Y  Y  Y  Y  F  L  D  H  C  V  I  *  Y  F  I  S  K  L  L  C  N  N  *  G  Y  N  S  I  V  C  L  I  R  L  C  *  L  C  S  Q  F  H  W  A  C  W  F  N  L  F  F  F  P  I  I  N  S  I  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16339" stop="16764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFGVNKMANWSIIFIFALVLVHANARNIPEVQNVNTKTLSTNSPTPSKIGGLNDNKNFITYGGIGGCSGIGGVGGVLPILGGAVGGVGGAAGGVGGVGGGLGGAGFKGIGGGVGGAGGVGGGGLGVGGGIGGYKGVGVIIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19260" PGL_stop="17631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19014" e_stop="17631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="19014" e_stop="17631" e_length="1384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19014" stop="18402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19014" stop="18582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19000" stop="18665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18999" stop="18293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18998" stop="18490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18998" stop="18498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18998" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18997" stop="18344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18997" stop="18393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18997" stop="18502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18997" stop="18625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18996" stop="18562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18995" stop="18490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18995" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18994" stop="18602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="18457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="18583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="18656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18993" stop="18685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18992" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="18586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="18472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="18490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18982" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18981" stop="18491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18980" stop="18489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18979" stop="18466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18979" stop="18669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18974" stop="18374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18971" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18965" stop="18572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18937" stop="18426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18932" stop="18253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18927" stop="18469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18849" stop="18694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18732" stop="18429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18727" stop="18209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18596" stop="17940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18525" stop="17631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18452" stop="17632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18449" stop="17798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18400" stop="17641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18324" stop="17632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18312" stop="17643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362804" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18061" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18057" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGTATCCCATCAAAATCAAATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATATACTATGTG</gDNA_template>
            <first_frame> P  S  I  P  S  K  S  N  Y  Y  F  Y  L  I  Y  Y  I  N  Y  P  I  L  T  Y  P  I  P  L  C  F  A  L  I  T  F  N  Y  S  Q  I  *  D  L  C  S  L  L  *  F  Y  L  *  Q  Y  R  E  *  K  L  R  S  S  *  Q  S  E  P  D  F  S  N  Y  F  T  F  F  F  N  H  *  K  *  L  S  N  *  R  E  K  K  S  K  T  K  T  N  L  W  C  L  K  Q  M  H  L  D  M  I  L  G  T  T  T  M  H  K  V  K  G  K  K  G  *  K  N  S  T  K  H  N  I  *  I  K  P  M  I  L  *  R  K  *  E  K  I  T  *  N  *  T  K  Q  K  *  A  Y  G  N  V  V  N  Y  *  M  M  L  L  M  I  V  I  L  I  *  M  N  H  K  F  N  I  Y  Y  K  V  L  R  Q  L  E  K  I  I  L  M  K  I  G  Y  T  *  Q  P  *  F  M  I  W  V  K  Y  *  F  Y  L  S  L  V  V  Y  L  N  G  L  L  L  V  T  H  S  L  *  D  V  H  L  M  N  Q  I  F  I  I  N  I  L  K  K  I  K  I  S  T  T  Q  F  I  T  Q  K  M  E  Y  I  M  I  L  L  D  *  K  M  S  *  C  H  G  V  M  M  I  I  C  T  W  L  L  K  K  M  V  Q  H  Y  H  Q  L  D  F  L  L  *  G  I  I  H  F  I  H  C  I  K  M  E  V  I  N  I  *  *  M  M  K  M  K  K  I  *  S  G  F  M  F  L  I  N  M  I  C  I  V  K  A  K  F  M  L  M  W  K  K  *  N  L  I  I  C  L  *  L  R  N  I  F  Q  Q  S  *  G  G  E  K  E  V  I  Y  I  *  S  Y  E  Q  I  I  F  Y  Y  M  V  D  I  I  C  E  M  W  I  R  L  Y  N  I  *  F  V  L  L  E  *  L  *  F  I  I  K  E  C  L  I  V  S  M  G  M  E  W  E  N  C  N  I  N  T  H  Y  F  P  K  R  L  N  M  Y  I  I  N  N  D  I  N  K  M  I  F  N  I  Y  Y  I  L  C  </first_frame>
            <second_frame>  Q  V  S  H  Q  N  Q  I  I  I  F  I  L  F  T  I  L  I  I  L  S  *  P  I  L  S  L  F  A  L  L  *  L  L  S  I  I  L  K  F  E  I  C  V  L  C  C  S  S  I  C  N  N  I  V  S  K  N  *  G  P  V  D  N  L  S  Q  I  F  Q  I  I  S  L  F  F  L  I  I  K  N  D  Y  P  T  R  G  K  K  N  P  R  P  R  P  I  Y  G  A  S  N  K  C  I  W  T  *  F  *  G  L  Q  Q  C  T  K  *  K  A  K  R  G  R  K  I  L  Q  N  T  T  Y  K  S  N  L  *  F  C  E  E  N  E  R  R  L  H  K  I  R  Q  S  K  N  E  H  M  G  M  L  *  I  I  K  *  C  C  *  *  *  *  S  *  F  R  *  T  T  N  S  T  F  I  T  K  C  *  G  N  *  K  R  L  S  *  *  R  L  V  T  L  N  S  L  N  S  *  F  G  *  N  I  S  F  T  *  V  W  W  F  T  S  M  G  C  C  W  *  H  I  P  F  R  M  C  I  *  *  I  K  Y  S  S  *  I  F  *  R  K  S  R  F  Q  Q  P  N  L  *  H  K  K  W  N  I  *  *  F  Y  W  T  R  K  C  H  D  V  M  G  S  *  *  L  Y  V  H  G  C  *  R  K  W  Y  N  I  T  I  S  W  T  F  Y  Y  K  V  S  F  I  L  S  I  A  *  K  W  R  L  *  T  F  N  E  *  *  R  *  R  K  F  E  V  A  S  C  F  *  *  I  *  F  V  *  *  K  Q  S  S  C  *  C  G  R  S  K  T  L  L  Y  V  F  N  *  E  I  F  S  S  K  A  K  V  V  K  R  R  *  Y  I  Y  E  V  M  N  K  L  F  F  T  I  W  *  I  *  F  V  R  C  G  L  G  C  I  I  Y  S  L  Y  Y  W  S  N  Y  N  L  L  S  R  S  V  *  *  S  L  W  E  W  N  G  K  I  V  I  *  I  P  I  I  S  L  R  D  *  T  C  T  *  L  I  M  I  L  I  K  *  Y  L  I  F  I  I  Y  Y  V </second_frame>
            <third_frame>   K  Y  P  I  K  I  K  L  L  F  L  S  Y  L  L  Y  *  L  S  Y  P  N  L  S  Y  P  S  L  L  C  F  N  Y  F  Q  L  F  S  N  L  R  F  V  F  F  V  V  V  L  S  V  T  I  S  *  V  K  I  K  V  Q  L  T  I  *  A  R  F  F  K  L  F  H  F  F  F  *  S  L  K  M  T  I  Q  L  E  G  K  K  I  Q  D  Q  D  Q  F  M  V  P  Q  T  N  A  F  G  H  D  F  R  D  Y  N  N  A  Q  S  E  R  Q  K  G  V  E  K  F  Y  K  T  Q  H  I  N  Q  T  Y  D  F  V  K  K  M  R  E  D  Y  I  K  L  D  K  A  K  M  S  I  W  E  C  C  E  L  L  N  D  V  V  D  D  S  D  P  D  L  D  E  P  Q  I  Q  H  L  L  Q  S  A  E  A  I  R  K  D  Y  P  N  E  D  W  L  H  L  T  A  L  I  H  D  L  G  K  I  L  V  L  P  K  F  G  G  L  P  Q  W  A  V  V  G  D  T  F  P  L  G  C  A  F  D  E  S  N  I  H  H  K  Y  F  K  E  N  Q  D  F  N  N  P  I  Y  N  T  K  N  G  I  Y  N  D  S  I  G  L  E  N  V  M  M  S  W  G  H  D  D  Y  M  Y  M  V  A  K  E  N  G  T  T  L  P  S  A  G  L  F  I  I  R  Y  H  S  F  Y  P  L  H  K  N  G  G  Y  K  H  L  M  N  D  E  D  E  E  N  L  K  W  L  H  V  F  N  K  Y  D  L  Y  S  K  S  K  V  H  V  N  V  E  E  V  K  P  Y  Y  M  S  L  I  E  K  Y  F  P  A  K  L  R  W  *  K  G  G  D  I  Y  M  K  L  *  T  N  Y  F  L  L  Y  G  R  Y  N  L  *  D  V  D  *  V  V  *  Y  I  V  C  T  I  G  V  I  I  I  Y  Y  Q  G  V  F  N  S  L  Y  G  N  G  M  G  K  L  *  Y  K  Y  P  L  F  P  *  E  I  E  H  V  H  N  *  *  *  Y  *  *  N  D  I  *  Y  L  L  Y  T  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18781" stop="17903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKMTIQLEGKKIQDQDQFMVPQTNAFGHDFRDYNNAQSERQKGVEKFYKTQHINQTYDFVKKMREDYIKLDKAKMSIWECCELLNDVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPLGCAFDESNIHHKYFKENQDFNNPIYNTKNGIYNDSIGLENVMMSWGHDDYMYMVAKENGTTLPSAGLFIIRYHSFYPLHKNGGYKHLMNDEDEENLKWLHVFNKYDLYSKSKVHVNVEEVKPYYMSLIEKYFPAKLRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19260" e_stop="19247"/>
            <exon e_start="18992" e_stop="17631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.818" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="19260" e_stop="19247" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.818" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19246" i_stop="18993" i_length="254"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="18992" e_stop="17631" e_length="1362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19260" stop="19247"/>
              <exon start="18992" stop="18581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18992" stop="18746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18991" stop="18520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18990" stop="18586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18989" stop="18586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18988" stop="18688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18986" stop="18579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="18472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18983" stop="18490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18982" stop="18540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18981" stop="18491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18980" stop="18489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18979" stop="18466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18979" stop="18669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18974" stop="18374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18971" stop="18485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18965" stop="18572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18937" stop="18426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18932" stop="18253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18927" stop="18469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18849" stop="18694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18732" stop="18429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18727" stop="18209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18596" stop="17940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18525" stop="17631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18452" stop="17632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18449" stop="17798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18400" stop="17641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18324" stop="17632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18312" stop="17643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362804" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18061" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18057" stop="17646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTATTTACATGG : ATTATTATTTTTATCTTATTTACTATATTAATTATCCTATCCTAACCTATCCTATCCCTCTTTGCTTTGCTTTAATTACTTTCAATTATTCTCAAATTTGAGATTTGTGTTCTTTGTTGTAGTTCTATCTGTAACAATATCGTGAGTAAAAATTAAGGTCCAGTTGACAATCTGAGCCAGATTTTTCAAATTATTTCACTTTTTTTTTTAATCATTAAAAATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGATTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAACCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAATTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGCAATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTACCTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATTCATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTATTGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTACCATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAATGATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAATGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGAAAAGGAGGTGATATATATATGAAGTTATGAACAAATTATTTTTTACTATATGGTAGATATAATTTGTGAGATGTGGATTAGGTTGTATAATATATAGTTTGTACTATTGGAGTAATTATAATTTATTATCAAGGAGTGTTTAATAGTCTCTATGGGAATGGAATGGGAAAATTGTAATATAAATACCCATTATTTCCCTAAGAGATTGAACATGTACATAATTAATAATGATATTAATAAAATGATATTTAATATTTATTATATACTATGTG</gDNA_template>
            <first_frame> T  Y  L  H  G :   L  L  F  L  S  Y  L  L  Y  *  L  S  Y  P  N  L  S  Y  P  S  L  L  C  F  N  Y  F  Q  L  F  S  N  L  R  F  V  F  F  V  V  V  L  S  V  T  I  S  *  V  K  I  K  V  Q  L  T  I  *  A  R  F  F  K  L  F  H  F  F  F  *  S  L  K  M  T  I  Q  L  E  G  K  K  I  Q  D  Q  D  Q  F  M  V  P  Q  T  N  A  F  G  H  D  F  R  D  Y  N  N  A  Q  S  E  R  Q  K  G  V  E  K  F  Y  K  T  Q  H  I  N  Q  T  Y  D  F  V  K  K  M  R  E  D  Y  I  K  L  D  K  A  K  M  S  I  W  E  C  C  E  L  L  N  D  V  V  D  D  S  D  P  D  L  D  E  P  Q  I  Q  H  L  L  Q  S  A  E  A  I  R  K  D  Y  P  N  E  D  W  L  H  L  T  A  L  I  H  D  L  G  K  I  L  V  L  P  K  F  G  G  L  P  Q  W  A  V  V  G  D  T  F  P  L  G  C  A  F  D  E  S  N  I  H  H  K  Y  F  K  E  N  Q  D  F  N  N  P  I  Y  N  T  K  N  G  I  Y  N  D  S  I  G  L  E  N  V  M  M  S  W  G  H  D  D  Y  M  Y  M  V  A  K  E  N  G  T  T  L  P  S  A  G  L  F  I  I  R  Y  H  S  F  Y  P  L  H  K  N  G  G  Y  K  H  L  M  N  D  E  D  E  E  N  L  K  W  L  H  V  F  N  K  Y  D  L  Y  S  K  S  K  V  H  V  N  V  E  E  V  K  P  Y  Y  M  S  L  I  E  K  Y  F  P  A  K  L  R  W  *  K  G  G  D  I  Y  M  K  L  *  T  N  Y  F  L  L  Y  G  R  Y  N  L  *  D  V  D  *  V  V  *  Y  I  V  C  T  I  G  V  I  I  I  Y  Y  Q  G  V  F  N  S  L  Y  G  N  G  M  G  K  L  *  Y  K  Y  P  L  F  P  *  E  I  E  H  V  H  N  *  *  *  Y  *  *  N  D  I  *  Y  L  L  Y  T  M   </first_frame>
            <second_frame>  P  I  Y  M   : D  Y  Y  F  Y  L  I  Y  Y  I  N  Y  P  I  L  T  Y  P  I  P  L  C  F  A  L  I  T  F  N  Y  S  Q  I  *  D  L  C  S  L  L  *  F  Y  L  *  Q  Y  R  E  *  K  L  R  S  S  *  Q  S  E  P  D  F  S  N  Y  F  T  F  F  F  N  H  *  K  *  L  S  N  *  R  E  K  K  S  K  T  K  T  N  L  W  C  L  K  Q  M  H  L  D  M  I  L  G  T  T  T  M  H  K  V  K  G  K  K  G  *  K  N  S  T  K  H  N  I  *  I  K  P  M  I  L  *  R  K  *  E  K  I  T  *  N  *  T  K  Q  K  *  A  Y  G  N  V  V  N  Y  *  M  M  L  L  M  I  V  I  L  I  *  M  N  H  K  F  N  I  Y  Y  K  V  L  R  Q  L  E  K  I  I  L  M  K  I  G  Y  T  *  Q  P  *  F  M  I  W  V  K  Y  *  F  Y  L  S  L  V  V  Y  L  N  G  L  L  L  V  T  H  S  L  *  D  V  H  L  M  N  Q  I  F  I  I  N  I  L  K  K  I  K  I  S  T  T  Q  F  I  T  Q  K  M  E  Y  I  M  I  L  L  D  *  K  M  S  *  C  H  G  V  M  M  I  I  C  T  W  L  L  K  K  M  V  Q  H  Y  H  Q  L  D  F  L  L  *  G  I  I  H  F  I  H  C  I  K  M  E  V  I  N  I  *  *  M  M  K  M  K  K  I  *  S  G  F  M  F  L  I  N  M  I  C  I  V  K  A  K  F  M  L  M  W  K  K  *  N  L  I  I  C  L  *  L  R  N  I  F  Q  Q  S  *  G  G  E  K  E  V  I  Y  I  *  S  Y  E  Q  I  I  F  Y  Y  M  V  D  I  I  C  E  M  W  I  R  L  Y  N  I  *  F  V  L  L  E  *  L  *  F  I  I  K  E  C  L  I  V  S  M  G  M  E  W  E  N  C  N  I  N  T  H  Y  F  P  K  R  L  N  M  Y  I  I  N  N  D  I  N  K  M  I  F  N  I  Y  Y  I  L  C  </second_frame>
            <third_frame>   L  F  T  W  :  I  I  I  F  I  L  F  T  I  L  I  I  L  S  *  P  I  L  S  L  F  A  L  L  *  L  L  S  I  I  L  K  F  E  I  C  V  L  C  C  S  S  I  C  N  N  I  V  S  K  N  *  G  P  V  D  N  L  S  Q  I  F  Q  I  I  S  L  F  F  L  I  I  K  N  D  Y  P  T  R  G  K  K  N  P  R  P  R  P  I  Y  G  A  S  N  K  C  I  W  T  *  F  *  G  L  Q  Q  C  T  K  *  K  A  K  R  G  R  K  I  L  Q  N  T  T  Y  K  S  N  L  *  F  C  E  E  N  E  R  R  L  H  K  I  R  Q  S  K  N  E  H  M  G  M  L  *  I  I  K  *  C  C  *  *  *  *  S  *  F  R  *  T  T  N  S  T  F  I  T  K  C  *  G  N  *  K  R  L  S  *  *  R  L  V  T  L  N  S  L  N  S  *  F  G  *  N  I  S  F  T  *  V  W  W  F  T  S  M  G  C  C  W  *  H  I  P  F  R  M  C  I  *  *  I  K  Y  S  S  *  I  F  *  R  K  S  R  F  Q  Q  P  N  L  *  H  K  K  W  N  I  *  *  F  Y  W  T  R  K  C  H  D  V  M  G  S  *  *  L  Y  V  H  G  C  *  R  K  W  Y  N  I  T  I  S  W  T  F  Y  Y  K  V  S  F  I  L  S  I  A  *  K  W  R  L  *  T  F  N  E  *  *  R  *  R  K  F  E  V  A  S  C  F  *  *  I  *  F  V  *  *  K  Q  S  S  C  *  C  G  R  S  K  T  L  L  Y  V  F  N  *  E  I  F  S  S  K  A  K  V  V  K  R  R  *  Y  I  Y  E  V  M  N  K  L  F  F  T  I  W  *  I  *  F  V  R  C  G  L  G  C  I  I  Y  S  L  Y  Y  W  S  N  Y  N  L  L  S  R  S  V  *  *  S  L  W  E  W  N  G  K  I  V  I  *  I  P  I  I  S  L  R  D  *  T  C  T  *  L  I  M  I  L  I  K  *  Y  L  I  F  I  I  Y  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18781" stop="17903"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLKMTIQLEGKKIQDQDQFMVPQTNAFGHDFRDYNNAQSERQKGVEKFYKTQHINQTYDFVKKMREDYIKLDKAKMSIWECCELLNDVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPLGCAFDESNIHHKYFKENQDFNNPIYNTKNGIYNDSIGLENVMMSWGHDDYMYMVAKENGTTLPSAGLFIIRYHSFYPLHKNGGYKHLMNDEDEENLKWLHVFNKYDLYSKSKVHVNVEEVKPYYMSLIEKYFPAKLRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="17651" PGL_stop="18122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17651" e_stop="18122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="17651" e_stop="18122" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17651" stop="18121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17697" stop="18122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATATCATTTTATTAATATCATTATTAATTATGTACATGTTCAATCTCTTAGGGAAATAATGGGTATTTATATTACAATTTTCCCATTCCATTCCCATAGAGACTATTAAACACTCCTTGATAATAAATTATAATTACTCCAATAGTACAAACTATATATTATACAACCTAATCCACATCTCACAAATTATATCTACCATATAGTAAAAAATAATTTGTTCATAACTTCATATATATATCACCTCCTTTTCACCACCTTAGCTTTGCTGGAAAATATTTCTCAATTAAAGACATATAATAAGGTTTTACTTCTTCCACATTAACATGAACTTTGCTTTTACTATACAAATCATATTTATTAAAAACATGAAGCCACTTCAAATTTTCTTCATCTTCATCATTCATTAAATGTTTATAACCTCCATTTTTATGCAATGGATAAAATGAATGATACCTTATAATAAAAAGT</gDNA_template>
            <first_frame> L  N  I  I  L  L  I  S  L  L  I  M  Y  M  F  N  L  L  G  K  *  W  V  F  I  L  Q  F  S  H  S  I  P  I  E  T  I  K  H  S  L  I  I  N  Y  N  Y  S  N  S  T  N  Y  I  L  Y  N  L  I  H  I  S  Q  I  I  S  T  I  *  *  K  I  I  C  S  *  L  H  I  Y  I  T  S  F  S  P  P  *  L  C  W  K  I  F  L  N  *  R  H  I  I  R  F  Y  F  F  H  I  N  M  N  F  A  F  T  I  Q  I  I  F  I  K  N  M  K  P  L  Q  I  F  F  I  F  I  I  H  *  M  F  I  T  S  I  F  M  Q  W  I  K  *  M  I  P  Y  N  K  K  </first_frame>
            <second_frame>  *  I  S  F  Y  *  Y  H  Y  *  L  C  T  C  S  I  S  *  G  N  N  G  Y  L  Y  Y  N  F  P  I  P  F  P  *  R  L  L  N  T  P  *  *  *  I  I  I  T  P  I  V  Q  T  I  Y  Y  T  T  *  S  T  S  H  K  L  Y  L  P  Y  S  K  K  *  F  V  H  N  F  I  Y  I  S  P  P  F  H  H  L  S  F  A  G  K  Y  F  S  I  K  D  I  *  *  G  F  T  S  S  T  L  T  *  T  L  L  L  L  Y  K  S  Y  L  L  K  T  *  S  H  F  K  F  S  S  S  S  S  F  I  K  C  L  *  P  P  F  L  C  N  G  *  N  E  *  Y  L  I  I  K  S </second_frame>
            <third_frame>   K  Y  H  F  I  N  I  I  I  N  Y  V  H  V  Q  S  L  R  E  I  M  G  I  Y  I  T  I  F  P  F  H  S  H  R  D  Y  *  T  L  L  D  N  K  L  *  L  L  Q  *  Y  K  L  Y  I  I  Q  P  N  P  H  L  T  N  Y  I  Y  H  I  V  K  N  N  L  F  I  T  S  Y  I  Y  H  L  L  F  T  T  L  A  L  L  E  N  I  S  Q  L  K  T  Y  N  K  V  L  L  L  P  H  *  H  E  L  C  F  Y  Y  T  N  H  I  Y  *  K  H  E  A  T  S  N  F  L  H  L  H  H  S  L  N  V  Y  N  L  H  F  Y  A  M  D  K  M  N  D  T  L  *  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0183M06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="26246" PGL_stop="25914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26246" e_stop="25914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="26246" e_stop="25914" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26246" stop="25914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26246" stop="25914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAGTTGTGTCAATGTTGATGGAGTCTGATGAGCAAGAAGGTAACTTCATCTTGTCTCAAAGTTGATCTCCCTATGACAGAAACATAATGTATTATGTTATGTTGCTCGGACTCTTCAAAAATGTTACATCACCCGTGTCCGATTCGCAAAACATGTACTAGTTTTGAAGTATTCAACATGCATCTGGTGGCATTCTTGAAGAGTTCGAACAACATAAGTTAAATATATAAATAGCGCGAAGACTGATATGCTTTCTAGTATTAGCTCTTGTATTGTATTCTACAGTTGAATAATAGAATTACCACATGTTTCTCAAAATGTAAATAATATC</gDNA_template>
            <first_frame> R  S  C  V  N  V  D  G  V  *  *  A  R  R  *  L  H  L  V  S  K  L  I  S  L  *  Q  K  H  N  V  L  C  Y  V  A  R  T  L  Q  K  C  Y  I  T  R  V  R  F  A  K  H  V  L  V  L  K  Y  S  T  C  I  W  W  H  S  *  R  V  R  T  T  *  V  K  Y  I  N  S  A  K  T  D  M  L  S  S  I  S  S  C  I  V  F  Y  S  *  I  I  E  L  P  H  V  S  Q  N  V  N  N  I </first_frame>
            <second_frame>  E  V  V  S  M  L  M  E  S  D  E  Q  E  G  N  F  I  L  S  Q  S  *  S  P  Y  D  R  N  I  M  Y  Y  V  M  L  L  G  L  F  K  N  V  T  S  P  V  S  D  S  Q  N  M  Y  *  F  *  S  I  Q  H  A  S  G  G  I  L  E  E  F  E  Q  H  K  L  N  I  *  I  A  R  R  L  I  C  F  L  V  L  A  L  V  L  Y  S  T  V  E  *  *  N  Y  H  M  F  L  K  M  *  I  I   </second_frame>
            <third_frame>   K  L  C  Q  C  *  W  S  L  M  S  K  K  V  T  S  S  C  L  K  V  D  L  P  M  T  E  T  *  C  I  M  L  C  C  S  D  S  S  K  M  L  H  H  P  C  P  I  R  K  T  C  T  S  F  E  V  F  N  M  H  L  V  A  F  L  K  S  S  N  N  I  S  *  I  Y  K  *  R  E  D  *  Y  A  F  *  Y  *  L  L  Y  C  I  L  Q  L  N  N  R  I  T  T  C  F  S  K  C  K  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0183M06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50698" PGL_stop="51492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50698" e_stop="51492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="50698" e_stop="51492" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50698" stop="51438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50757" stop="51492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50757" stop="51452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50757" stop="51451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTGATACGGGTGCCACCTCACGAACTTAATGCTATGAGTTCGCCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAGCCAGCCGCTTCTAATGGACACAGATTCATTTTGGTTGCCATCGATTATTTCACCAAGTGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATCTGATATGCCGATTTGGAGTTCCAGAATCCATCATCACGGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATTCACCGAAGGTCCACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTTGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCTGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGACCAACTAGCTTTGATTGATGAGAAGAGGATGGTTGCTGTTTGCCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCATGACGAGCACAAAGGAAAGTTCGCACCGAACTG</gDNA_template>
            <first_frame> R  S  D  T  G  A  T  S  R  T  *  C  Y  E  F  A  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  A  S  R  F  *  W  T  Q  I  H  F  G  C  H  R  L  F  H  Q  V  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  S  D  M  P  I  W  S  S  R  I  H  H  H  G  *  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  S  P  K  V  H  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  *  S  R  D  T  V  T  E  D  H  P  R  S  *  A  K  *  C  *  V  G  *  Q  T  D  *  P  T  S  F  D  *  *  E  E  D  G  C  C  L  P  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  *  R  A  Q  R  K  V  R  T  E  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  H  D  E  H  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  Y  G  C  H  L  T  N  L  M  L  *  V  R  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  S  Q  P  L  L  M  D  T  D  S  F  W  L  P  S  I  I  S  P  S  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  Y  A  D  L  E  F  Q  N  P  S  S  R  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  F  T  E  G  P  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  L  K  S  R  Y  R  H  *  G  S  S  K  K  L  S  *  V  M  L  S  G  L  A  N  G  L  T  N  *  L  *  L  M  R  R  G  W  L  L  F  A  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  M  T  S  T  K  E  S  S  H  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50699" stop="51490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHHDEHKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="61249" PGL_stop="61818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61249" e_stop="61818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61249" e_stop="61818" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61249" stop="61818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTGGTGTTTTTTCTCTAAAAGCATGCCTACTGAACAATTCAAGTGCTTCAACCTCGGATAATAGTTGGACTTCATACACGTTATCCCCGACGTGACTGATCAACAGGTTCTTGTCTCTTGATTTAAAATAATTCTGCTACCCATTCCAAACCACTCTGTCCCTCCAACTAAAAATTCCAACTGTTCTCGATGGTTTACATCATCGAGAATGAACAAAACTTTCTTCCAGCGAAGCCTATTCTTTAAAATAATCATCCCTTCATGTTCACTAGTTACACTCATCTTTTCACCCAAGAGCTTGCGAATGACGACTTGTGCCAGCCATGCTTGTCCATTTTTCTGGTGAAGTTCTCCAACATCACCAAGAAAACAATCAGCTTCAAATAGATGGCGGTATCTTTCATACAGAACACGTGCAAGTTCTGATTTGCCGATGCCACCCATACCACTAATACCAATAGAGCGAGCATCATTTGATTCCATACTTAATAATTCGATTACTTCCTCAACCTGAGATCTCATACCCACTAAGCTTTCCGGAAAAGGTGAAATAATTTGAAGTGAC</gDNA_template>
            <first_frame> F  F  W  C  F  F  S  K  S  M  P  T  E  Q  F  K  C  F  N  L  G  *  *  L  D  F  I  H  V  I  P  D  V  T  D  Q  Q  V  L  V  S  *  F  K  I  I  L  L  P  I  P  N  H  S  V  P  P  T  K  N  S  N  C  S  R  W  F  T  S  S  R  M  N  K  T  F  F  Q  R  S  L  F  F  K  I  I  I  P  S  C  S  L  V  T  L  I  F  S  P  K  S  L  R  M  T  T  C  A  S  H  A  C  P  F  F  W  *  S  S  P  T  S  P  R  K  Q  S  A  S  N  R  W  R  Y  L  S  Y  R  T  R  A  S  S  D  L  P  M  P  P  I  P  L  I  P  I  E  R  A  S  F  D  S  I  L  N  N  S  I  T  S  S  T  *  D  L  I  P  T  K  L  S  G  K  G  E  I  I  *  S  D </first_frame>
            <second_frame>  S  F  G  V  F  S  L  K  A  C  L  L  N  N  S  S  A  S  T  S  D  N  S  W  T  S  Y  T  L  S  P  T  *  L  I  N  R  F  L  S  L  D  L  K  *  F  C  Y  P  F  Q  T  T  L  S  L  Q  L  K  I  P  T  V  L  D  G  L  H  H  R  E  *  T  K  L  S  S  S  E  A  Y  S  L  K  *  S  S  L  H  V  H  *  L  H  S  S  F  H  P  R  A  C  E  *  R  L  V  P  A  M  L  V  H  F  S  G  E  V  L  Q  H  H  Q  E  N  N  Q  L  Q  I  D  G  G  I  F  H  T  E  H  V  Q  V  L  I  C  R  C  H  P  Y  H  *  Y  Q  *  S  E  H  H  L  I  P  Y  L  I  I  R  L  L  P  Q  P  E  I  S  Y  P  L  S  F  P  E  K  V  K  *  F  E  V   </second_frame>
            <third_frame>   L  L  V  F  F  L  *  K  H  A  Y  *  T  I  Q  V  L  Q  P  R  I  I  V  G  L  H  T  R  Y  P  R  R  D  *  S  T  G  S  C  L  L  I  *  N  N  S  A  T  H  S  K  P  L  C  P  S  N  *  K  F  Q  L  F  S  M  V  Y  I  I  E  N  E  Q  N  F  L  P  A  K  P  I  L  *  N  N  H  P  F  M  F  T  S  Y  T  H  L  F  T  Q  E  L  A  N  D  D  L  C  Q  P  C  L  S  I  F  L  V  K  F  S  N  I  T  K  K  T  I  S  F  K  *  M  A  V  S  F  I  Q  N  T  C  K  F  *  F  A  D  A  T  H  T  T  N  T  N  R  A  S  I  I  *  F  H  T  *  *  F  D  Y  F  L  N  L  R  S  H  T  H  *  A  F  R  K  R  *  N  N  L  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61375" stop="61599"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKIILLPIPNHSVPPTKNSNCSRWFTSSRMNKTFFQRSLFFKIIIPSCSLVTLIFSPKSLRMTTCASHACPFFW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="63630" PGL_stop="66996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63630" e_stop="63759"/>
            <exon e_start="65744" e_stop="66116"/>
            <exon e_start="66220" e_stop="66369"/>
            <exon e_start="66960" e_stop="66996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.933" e_score="0.993"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63630" e_stop="63759" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.805">
            <gDNA_intron_boundary i_start="63760" i_stop="65743" i_length="1984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65744" e_stop="66116" e_length="373"/>
          </exon>
          <intron i_serial="2" don_prob="0.677" acc_prob="0.938">
            <gDNA_intron_boundary i_start="66117" i_stop="66219" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="66220" e_stop="66369" e_length="150"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.933">
            <gDNA_intron_boundary i_start="66370" i_stop="66959" i_length="590"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="66960" e_stop="66996" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63630" stop="63759"/>
              <exon start="65744" stop="66116"/>
              <exon start="66220" stop="66286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63635" stop="63759"/>
              <exon start="65744" stop="66116"/>
              <exon start="66220" stop="66369"/>
              <exon start="66960" stop="66996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63654" stop="63759"/>
              <exon start="65744" stop="65986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGCTGAAATTTGGCTACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG : GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGTATAGTACCTGAGATATTTGTTCGGTCCTGCATAGGACTAATGCTGGTTATGGCTGTCAATGCTGCTGTTGTCAAAGCGCCTTCTT : TTGCTCTCACTGAAGAAAATCTACTTTTCTTGGAGGCATGGAGAACAATTGACCGTGCATATATTGACAAGACCTTCAATGGTCAAAGTTGGTTTAGGTACCGAGAAGACGCTCTACGAAATGAACCAATGAACACAAGGCAGGAAACAT : ATGCAGCAATAAAAAAGATGCTCGCCACTCTGAATGA</gDNA_template>
            <first_frame> V  A  E  I  W  L  P  T  E  I  V  S  F  H  F  *  A  S  N  G  S  S  T  G  K  F  E  F  S  F  I  H  H  H  Q  K  K  P  H  Y  F  F  *   : G  A  F  M  E  F  F  V  Q  R  K  *  *  I  S  S  I  S  S  Y  I  V  S  E  K  K  W  Q  *  Q  L  W  K  L  L  S  F  M  L  H  *  A  N  V  Q  K  Q  N  V  F  S  A  N  P  E  V  *  K  N  I  H  R  *  A  K  F  A  G  Y  T  K  W  L  S  F  Y  T  K  K  I  Q  I  Q  S  P  Q  N  I  K  A  F  *  T  L  *  E  Y  S  T  *  D  I  C  S  V  L  H  R  T  N  A  G  Y  G  C  Q  C  C  C  C  Q  S  A  F  F :   C  S  H  *  R  K  S  T  F  L  G  G  M  E  N  N  *  P  C  I  Y  *  Q  D  L  Q  W  S  K  L  V  *  V  P  R  R  R  S  T  K  *  T  N  E  H  K  A  G  N  I :   C  S  N  K  K  D  A  R  H  S  E  * </first_frame>
            <second_frame>  W  L  K  F  G  Y  R  L  K  S  F  R  F  I  S  E  L  A  M  E  A  L  L  G  S  S  N  S  P  S  F  T  I  I  R  R  N  P  I  T  S  F  K  :  V  L  S  W  N  S  L  Y  S  G  S  N  K  S  R  V  Y  H  P  I  L  C  L  K  R  S  G  N  D  N  S  G  S  C  S  P  S  C  Y  I  E  Q  M  Y  R  N  R  M  F  S  Q  P  I  R  R  C  R  K  I  F  I  D  K  Q  S  L  L  V  I  Q  N  G  L  A  F  I  P  R  K  F  K  S  S  L  R  K  T  L  K  H  S  E  L  C  K  S  I  V  P  E  I  F  V  R  S  C  I  G  L  M  L  V  M  A  V  N  A  A  V  V  K  A  P  S   : F  A  L  T  E  E  N  L  L  F  L  E  A  W  R  T  I  D  R  A  Y  I  D  K  T  F  N  G  Q  S  W  F  R  Y  R  E  D  A  L  R  N  E  P  M  N  T  R  Q  E  T   : Y  A  A  I  K  K  M  L  A  T  L  N   </second_frame>
            <third_frame>   G  *  N  L  A  T  D  *  N  R  F  V  S  F  L  S  *  Q  W  K  L  Y  W  E  V  R  I  L  L  H  S  P  S  S  E  E  T  P  L  L  L  L  R :   C  F  H  G  I  L  C  T  A  E  V  I  N  L  E  Y  I  I  L  Y  C  V  *  K  E  V  A  M  T  T  L  E  V  A  L  L  H  A  T  L  S  K  C  T  E  T  E  C  F  L  S  Q  S  G  G  V  E  K  Y  S  *  I  S  K  V  C  W  L  Y  K  M  A  *  L  L  Y  Q  E  N  S  N  P  V  S  A  K  H  *  S  I  L  N  F  V  R  V  *  Y  L  R  Y  L  F  G  P  A  *  D  *  C  W  L  W  L  S  M  L  L  L  S  K  R  L  L  :  L  L  S  L  K  K  I  Y  F  S  W  R  H  G  E  Q  L  T  V  H  I  L  T  R  P  S  M  V  K  V  G  L  G  T  E  K  T  L  Y  E  M  N  Q  *  T  Q  G  R  K  H  :  M  Q  Q  *  K  R  C  S  P  L  *  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63631" stop="63759"/>
                    <exon start="65744" stop="66116"/>
                    <exon start="66220" stop="66369"/>
                    <exon start="66960" stop="66994"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLKFGYRLKSFRFISELAMEALLGSSNSPSFTIIRRNPITSFKVLSWNSLYSGSNKSRVYHPILCLKRSGNDNSGSCSPSCYIEQMYRNRMFSQPIRRCRKIFIDKQSLLVIQNGLAFIPRKFKSSLRKTLKHSELCKSIVPEIFVRSCIGLMLVMAVNAAVVKAPSFALTEENLLFLEAWRTIDRAYIDKTFNGQSWFRYREDALRNEPMNTRQETYAAIKKMLATLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63646" e_stop="63759"/>
            <exon e_start="63963" e_stop="64002"/>
            <exon e_start="65744" e_stop="66031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.406" e_score="1.000"/>
          <exon-intron don_prob="0.711" acc_prob="0.805" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63646" e_stop="63759" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.406">
            <gDNA_intron_boundary i_start="63760" i_stop="63962" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63963" e_stop="64002" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.711" acc_prob="0.805">
            <gDNA_intron_boundary i_start="64003" i_stop="65743" i_length="1741"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="65744" e_stop="66031" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63646" stop="63759"/>
              <exon start="63963" stop="64002"/>
              <exon start="65744" stop="66031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCGACTGAAATCGTTTCGTTTCATTTCTGAGCTAGCAATGGAAGCTCTACTGGGAAGTTCGAATTCTCCTTCATTCACCATCATCAGAAGAAACCCCATTACTTCTTTTAAG : TATGAATGGTAGTAGAAGAAACCCCATTATTTCTTTTAAG : GTGCTTTCATGGAATTCTTTGTACAGCGGAAGTAATAAATCTCGAGTATATCATCCTATATTGTGTCTGAAAAGAAGTGGCAATGACAACTCTGGAAGTTGCTCTCCTTCATGCTACATTGAGCAAATGTACAGAAACAGAATGTTTTCTCAGCCAATCCGGAGGTGTAGAAAAATATTCATAGATAAGCAAAGTTTGCTGGTTATACAAAATGGCTTAGCTTTTATACCAAGAAAATTCAAATCCAGTCTCCGCAAAACATTAAAGCATTCTGAACTTTGTAAGAGT</gDNA_template>
            <first_frame> Y  R  L  K  S  F  R  F  I  S  E  L  A  M  E  A  L  L  G  S  S  N  S  P  S  F  T  I  I  R  R  N  P  I  T  S  F  K  :  Y  E  W  *  *  K  K  P  H  Y  F  F  *   : G  A  F  M  E  F  F  V  Q  R  K  *  *  I  S  S  I  S  S  Y  I  V  S  E  K  K  W  Q  *  Q  L  W  K  L  L  S  F  M  L  H  *  A  N  V  Q  K  Q  N  V  F  S  A  N  P  E  V  *  K  N  I  H  R  *  A  K  F  A  G  Y  T  K  W  L  S  F  Y  T  K  K  I  Q  I  Q  S  P  Q  N  I  K  A  F  *  T  L  *  E  </first_frame>
            <second_frame>  T  D  *  N  R  F  V  S  F  L  S  *  Q  W  K  L  Y  W  E  V  R  I  L  L  H  S  P  S  S  E  E  T  P  L  L  L  L  S :   M  N  G  S  R  R  N  P  I  I  S  F  K  :  V  L  S  W  N  S  L  Y  S  G  S  N  K  S  R  V  Y  H  P  I  L  C  L  K  R  S  G  N  D  N  S  G  S  C  S  P  S  C  Y  I  E  Q  M  Y  R  N  R  M  F  S  Q  P  I  R  R  C  R  K  I  F  I  D  K  Q  S  L  L  V  I  Q  N  G  L  A  F  I  P  R  K  F  K  S  S  L  R  K  T  L  K  H  S  E  L  C  K  S </second_frame>
            <third_frame>   P  T  E  I  V  S  F  H  F  *  A  S  N  G  S  S  T  G  K  F  E  F  S  F  I  H  H  H  Q  K  K  P  H  Y  F  F  *   : V  *  M  V  V  E  E  T  P  L  F  L  L  R :   C  F  H  G  I  L  C  T  A  E  V  I  N  L  E  Y  I  I  L  Y  C  V  *  K  E  V  A  M  T  T  L  E  V  A  L  L  H  A  T  L  S  K  C  T  E  T  E  C  F  L  S  Q  S  G  G  V  E  K  Y  S  *  I  S  K  V  C  W  L  Y  K  M  A  *  L  L  Y  Q  E  N  S  N  P  V  S  A  K  H  *  S  I  L  N  F  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63683" stop="63759"/>
                    <exon start="63963" stop="64002"/>
                    <exon start="65744" stop="66031"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWKLYWEVRILLHSPSSEETPLLLLSMNGSRRNPIISFKVLSWNSLYSGSNKSRVYHPILCLKRSGNDNSGSCSPSCYIEQMYRNRMFSQPIRRCRKIFIDKQSLLVIQNGLAFIPRKFKSSLRKTLKHSELCKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="67222" PGL_stop="70956"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67222" e_stop="67359"/>
            <exon e_start="68136" e_stop="68204"/>
            <exon e_start="68483" e_stop="68601"/>
            <exon e_start="69081" e_stop="69156"/>
            <exon e_start="69227" e_stop="69268"/>
            <exon e_start="69693" e_stop="69801"/>
            <exon e_start="70240" e_stop="70337"/>
            <exon e_start="70424" e_stop="70517"/>
            <exon e_start="70605" e_stop="70956"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.890" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.595" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="67222" e_stop="67359" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67360" i_stop="68135" i_length="776"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68136" e_stop="68204" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.890" acc_prob="0.767">
            <gDNA_intron_boundary i_start="68205" i_stop="68482" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68483" e_stop="68601" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="68602" i_stop="69080" i_length="479"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69081" e_stop="69156" e_length="76"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.768">
            <gDNA_intron_boundary i_start="69157" i_stop="69226" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69227" e_stop="69268" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.595">
            <gDNA_intron_boundary i_start="69269" i_stop="69692" i_length="424"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69693" e_stop="69801" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69802" i_stop="70239" i_length="438"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70240" e_stop="70337" e_length="98"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="70338" i_stop="70423" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70424" e_stop="70517" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70518" i_stop="70604" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70605" e_stop="70956" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67222" stop="67359"/>
              <exon start="68136" stop="68204"/>
              <exon start="68483" stop="68601"/>
              <exon start="69081" stop="69156"/>
              <exon start="69227" stop="69268"/>
              <exon start="69693" stop="69801"/>
              <exon start="70240" stop="70337"/>
              <exon start="70424" stop="70517"/>
              <exon start="70605" stop="70693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69742" stop="69801"/>
              <exon start="70240" stop="70337"/>
              <exon start="70424" stop="70517"/>
              <exon start="70605" stop="70956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69743" stop="69801"/>
              <exon start="70240" stop="70337"/>
              <exon start="70424" stop="70517"/>
              <exon start="70605" stop="70956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTGGACTGGTCGTTATCTCAGCTTCTCCAGGAGGTCCTGCAAATAGGGCTGGCATCTCATCTGGTGATATCATCCTACAAATTGACAATACCAGCACAGAAAACATGGGTATATATGATGCAGCAGAACGGTTACA : AGGACCTGAAGGAAGTGGTGTGGAACTAACTGTACTTCATGGATCCGAGAGAAGGCAGCTACCATTAAT : ACGGGAAAAAGTTTCTCTGAATCCTGTAAAATCAAGAATCTGCAAGCTACCCACTGGAGGAGATGATGCTCCTCTGATCGGATACATCAAACTATCAACATTCAACCAGAACGCTTCTG : GTGCTGTAAGAGAGGCGATTGAAACCTTAAGGAAAAACAATGTCAAGGCATTTGTCTTGGACCTTCGGGATAACAG : TGGTGGTCTCTTCCCTGAAGGAGTTGAGATAGCAAAAATTTG : GTTGGATAAAGGTGTGATTGTATACATTTGTGATAGCCGTGGTGTTCGAGATATTTATGACACGGATGGGAGCAATGTGGTAGCTGCTTCAGAGCCCCTAGCTGTGCTG : GTAAACAAAGGGACTGCAAGTGCAAGTGAGATTTTAGCCGGTGCTTTGAAAGATAACAAGCGTGCACAGCTGTTTGGTGAACCAACATATGGCAAGGG : TAAAATCCAGTCTGTATTCCAGCTATCTGATGGCTCTGGCGTGGCTGTTACAGTTGCTCGGTATGAAACTCCTGCTCACAACGATATAGACAAG : GTTGGTGTCACCCCGGACCATCCTTTGCCAGCATCATTTCCAAAAGACGACGAGAGCTTCTGTAACTGCCTTCAAAATCCTGCTGCTGCTTGCCACATAGATAGAGTCGAGTTGTTCTCAAAATGACTCAATCCTGCAATCTGAAGAAAATACCTTACTTTTTCAACATTTTGTTTGTAGATACCATTGATTCTTTAACCAGATACATGCATCTGATGTTTGTACATACAAAGAACCAAGAACAAAGGGACAACTCAATTCCTAATACTGTTGAACTCTTTGCTCTAAAAAGTGTCTATTTTACCCTTGAACTATTGGAAATGGAACAACTGTGCCGCCTTCTTAATATAAA</gDNA_template>
            <first_frame> L  W  T  G  R  Y  L  S  F  S  R  R  S  C  K  *  G  W  H  L  I  W  *  Y  H  P  T  N  *  Q  Y  Q  H  R  K  H  G  Y  I  *  C  S  R  T  V  T  :  R  T  *  R  K  W  C  G  T  N  C  T  S  W  I  R  E  K  A  A  T  I  N  :  T  G  K  S  F  S  E  S  C  K  I  K  N  L  Q  A  T  H  W  R  R  *  C  S  S  D  R  I  H  Q  T  I  N  I  Q  P  E  R  F  W :   C  C  K  R  G  D  *  N  L  K  E  K  Q  C  Q  G  I  C  L  G  P  S  G  *  Q  :  W  W  S  L  P  *  R  S  *  D  S  K  N  L  :  V  G  *  R  C  D  C  I  H  L  *  *  P  W  C  S  R  Y  L  *  H  G  W  E  Q  C  G  S  C  F  R  A  P  S  C  A   : G  K  Q  R  D  C  K  C  K  *  D  F  S  R  C  F  E  R  *  Q  A  C  T  A  V  W  *  T  N  I  W  Q  G  :  *  N  P  V  C  I  P  A  I  *  W  L  W  R  G  C  Y  S  C  S  V  *  N  S  C  S  Q  R  Y  R  Q   : G  W  C  H  P  G  P  S  F  A  S  I  I  S  K  R  R  R  E  L  L  *  L  P  S  K  S  C  C  C  L  P  H  R  *  S  R  V  V  L  K  M  T  Q  S  C  N  L  K  K  I  P  Y  F  F  N  I  L  F  V  D  T  I  D  S  L  T  R  Y  M  H  L  M  F  V  H  T  K  N  Q  E  Q  R  D  N  S  I  P  N  T  V  E  L  F  A  L  K  S  V  Y  F  T  L  E  L  L  E  M  E  Q  L  C  R  L  L  N  I   </first_frame>
            <second_frame>  S  G  L  V  V  I  S  A  S  P  G  G  P  A  N  R  A  G  I  S  S  G  D  I  I  L  Q  I  D  N  T  S  T  E  N  M  G  I  Y  D  A  A  E  R  L  Q :   G  P  E  G  S  G  V  E  L  T  V  L  H  G  S  E  R  R  Q  L  P  L  I :   R  E  K  V  S  L  N  P  V  K  S  R  I  C  K  L  P  T  G  G  D  D  A  P  L  I  G  Y  I  K  L  S  T  F  N  Q  N  A  S   : G  A  V  R  E  A  I  E  T  L  R  K  N  N  V  K  A  F  V  L  D  L  R  D  N  S :   G  G  L  F  P  E  G  V  E  I  A  K  I  W :   L  D  K  G  V  I  V  Y  I  C  D  S  R  G  V  R  D  I  Y  D  T  D  G  S  N  V  V  A  A  S  E  P  L  A  V  L  :  V  N  K  G  T  A  S  A  S  E  I  L  A  G  A  L  K  D  N  K  R  A  Q  L  F  G  E  P  T  Y  G  K  G :   K  I  Q  S  V  F  Q  L  S  D  G  S  G  V  A  V  T  V  A  R  Y  E  T  P  A  H  N  D  I  D  K  :  V  G  V  T  P  D  H  P  L  P  A  S  F  P  K  D  D  E  S  F  C  N  C  L  Q  N  P  A  A  A  C  H  I  D  R  V  E  L  F  S  K  *  L  N  P  A  I  *  R  K  Y  L  T  F  S  T  F  C  L  *  I  P  L  I  L  *  P  D  T  C  I  *  C  L  Y  I  Q  R  T  K  N  K  G  T  T  Q  F  L  I  L  L  N  S  L  L  *  K  V  S  I  L  P  L  N  Y  W  K  W  N  N  C  A  A  F  L  I  *  </second_frame>
            <third_frame>   L  D  W  S  L  S  Q  L  L  Q  E  V  L  Q  I  G  L  A  S  H  L  V  I  S  S  Y  K  L  T  I  P  A  Q  K  T  W  V  Y  M  M  Q  Q  N  G  Y   : K  D  L  K  E  V  V  W  N  *  L  Y  F  M  D  P  R  E  G  S  Y  H  *   : Y  G  K  K  F  L  *  I  L  *  N  Q  E  S  A  S  Y  P  L  E  E  M  M  L  L  *  S  D  T  S  N  Y  Q  H  S  T  R  T  L  L  :  V  L  *  E  R  R  L  K  P  *  G  K  T  M  S  R  H  L  S  W  T  F  G  I  T   : V  V  V  S  S  L  K  E  L  R  *  Q  K  F   : G  W  I  K  V  *  L  Y  T  F  V  I  A  V  V  F  E  I  F  M  T  R  M  G  A  M  W  *  L  L  Q  S  P  *  L  C  W :   *  T  K  G  L  Q  V  Q  V  R  F  *  P  V  L  *  K  I  T  S  V  H  S  C  L  V  N  Q  H  M  A  R   : V  K  S  S  L  Y  S  S  Y  L  M  A  L  A  W  L  L  Q  L  L  G  M  K  L  L  L  T  T  I  *  T  R :   L  V  S  P  R  T  I  L  C  Q  H  H  F  Q  K  T  T  R  A  S  V  T  A  F  K  I  L  L  L  L  A  T  *  I  E  S  S  C  S  Q  N  D  S  I  L  Q  S  E  E  N  T  L  L  F  Q  H  F  V  C  R  Y  H  *  F  F  N  Q  I  H  A  S  D  V  C  T  Y  K  E  P  R  T  K  G  Q  L  N  S  *  Y  C  *  T  L  C  S  K  K  C  L  F  Y  P  *  T  I  G  N  G  T  T  V  P  P  S  *  Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67223" stop="67359"/>
                    <exon start="68136" stop="68204"/>
                    <exon start="68483" stop="68601"/>
                    <exon start="69081" stop="69156"/>
                    <exon start="69227" stop="69268"/>
                    <exon start="69693" stop="69801"/>
                    <exon start="70240" stop="70337"/>
                    <exon start="70424" stop="70517"/>
                    <exon start="70605" stop="70730"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGLVVISASPGGPANRAGISSGDIILQIDNTSTENMGIYDAAERLQGPEGSGVELTVLHGSERRQLPLIREKVSLNPVKSRICKLPTGGDDAPLIGYIKLSTFNQNASGAVREAIETLRKNNVKAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIYDTDGSNVVAASEPLAVLVNKGTASASEILAGALKDNKRAQLFGEPTYGKGKIQSVFQLSDGSGVAVTVARYETPAHNDIDKVGVTPDHPLPASFPKDDESFCNCLQNPAAACHIDRVELFSK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70709" stop="70954"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRVVLKMTQSCNLKKIPYFFNILFVDTIDSLTRYMHLMFVHTKNQEQRDNSIPNTVELFALKSVYFTLELLEMEQLCRLLNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71459" PGL_stop="73966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71463" e_stop="71874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71463" e_stop="71874" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71463" stop="71838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71468" stop="71838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71498" stop="71855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71511" stop="71874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCCCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAATTTTATCATAGCTTGCTTATTCAC</gDNA_template>
            <first_frame> Q  S  Q  F  S  N  C  I  S  E  R  R  R  R  R  I  N  N  E  A  D  G  S  R  L  F  S  R  H  G  R  T  R  I  N  N  G  D  G  R  *  *  R  G  H  N  R  H  V  R  R  R  S  T  R  W  W  R  T  P  P  T  R  R  L  R  L  L  Q  S  L  S  G  *  F  R  *  L  R  Y  Q  L  N  L  S  T  K  T  L  P  F  L  K  N  N  Y  M  C  C  F  F  S  L  L  G  F  T  L  A  Y  G  T  L  Y  L  I  F  *  R  N  K  A  I  F  L  D  A  L  E  I  L  S  *  L  A  Y  S  </first_frame>
            <second_frame>  N  P  N  S  P  I  A  S  A  R  E  E  E  E  E  S  T  M  K  P  M  V  V  D  Y  L  A  D  M  E  E  Q  G  S  T  M  A  M  D  V  D  D  V  D  T  I  D  M  F  G  E  G  P  L  G  G  G  E  H  L  R  L  A  D  S  D  F  F  N  L  F  Q  D  D  F  D  D  S  D  I  N  *  I  Y  Q  L  K  L  F  L  S  *  K  T  T  T  C  V  V  S  S  P  F  *  G  L  L  L  P  M  V  R  C  T  *  F  S  E  G  I  K  Q  F  F  W  M  L  *  K  F  Y  H  S  L  L  I  H </second_frame>
            <third_frame>   I  P  I  L  Q  L  H  Q  R  E  K  K  K  K  N  Q  Q  *  S  R  W  *  *  T  I  *  Q  T  W  K  N  K  D  Q  Q  W  R  W  T  L  M  T  W  T  Q  S  T  C  S  A  K  V  H  S  V  V  A  N  T  S  D  S  P  T  P  T  S  S  I  S  F  R  M  I  S  M  T  Q  I  S  T  K  S  I  N  *  N  S  S  F  P  K  K  Q  L  H  V  L  F  L  L  P  S  R  V  Y  S  C  L  W  Y  V  V  L  N  F  L  K  E  *  S  N  F  F  G  C  S  R  N  F  I  I  A  C  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71464" stop="71709"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPNSPIASAREEEEESTMKPMVVDYLADMEEQGSTMAMDVDDVDTIDMFGEGPLGGGEHLRLADSDFFNLFQDDFDDSDIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71459" e_stop="71850"/>
            <exon e_start="73896" e_stop="73966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.662"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="71459" e_stop="71850" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71851" i_stop="73895" i_length="2045"/>
          </intron>
          <exon e_serial="2" e_score="0.662">
            <gDNA_exon_boundary e_start="73896" e_stop="73966" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71459" stop="71850"/>
              <exon start="73896" stop="73966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71463" stop="71838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71468" stop="71838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCACAATCCCAATTCTCCAATTGCATCAGCGAGAGAAGAAGAAGAAGAATCAACAATGAAGCCGATGGTAGTAGACTATTTAGCAGACATGGAAGAACAAGGATCAACAATGGCGATGGACGTTGATGACGTGGACACAATCGACATGTTCGGCGAAGGTCCACTCGGTGGTGGCGAACACCTCCGACTCGCCGACTCCGACTTCTTCAATCTCTTTCAGGATGATTTCGATGACTCAGATATCAACTAAATCTATCAACTAAAACTCTTCCTTTCCTAAAAAACAACTACATGTGTTGTTTCTTCTCCCTTCTAGGGTTTACTCTTGCCTATGGTACGTTGTACTTAATTTTCTGAAGGAATAAAGCAATTTTTTTGGATGCTCTAGAAA : AAAAAAACAAATACTTAAAAGAAAAAAGAGATAAAGATGCAAAAAAATGAGTGAAATAAAACATGATTAAA</gDNA_template>
            <first_frame> F  T  I  P  I  L  Q  L  H  Q  R  E  K  K  K  K  N  Q  Q  *  S  R  W  *  *  T  I  *  Q  T  W  K  N  K  D  Q  Q  W  R  W  T  L  M  T  W  T  Q  S  T  C  S  A  K  V  H  S  V  V  A  N  T  S  D  S  P  T  P  T  S  S  I  S  F  R  M  I  S  M  T  Q  I  S  T  K  S  I  N  *  N  S  S  F  P  K  K  Q  L  H  V  L  F  L  L  P  S  R  V  Y  S  C  L  W  Y  V  V  L  N  F  L  K  E  *  S  N  F  F  G  C  S  R  K :   K  K  Q  I  L  K  R  K  K  R  *  R  C  K  K  M  S  E  I  K  H  D  *  </first_frame>
            <second_frame>  S  Q  S  Q  F  S  N  C  I  S  E  R  R  R  R  R  I  N  N  E  A  D  G  S  R  L  F  S  R  H  G  R  T  R  I  N  N  G  D  G  R  *  *  R  G  H  N  R  H  V  R  R  R  S  T  R  W  W  R  T  P  P  T  R  R  L  R  L  L  Q  S  L  S  G  *  F  R  *  L  R  Y  Q  L  N  L  S  T  K  T  L  P  F  L  K  N  N  Y  M  C  C  F  F  S  L  L  G  F  T  L  A  Y  G  T  L  Y  L  I  F  *  R  N  K  A  I  F  L  D  A  L  E   : K  K  N  K  Y  L  K  E  K  R  D  K  D  A  K  K  *  V  K  *  N  M  I  K </second_frame>
            <third_frame>   H  N  P  N  S  P  I  A  S  A  R  E  E  E  E  E  S  T  M  K  P  M  V  V  D  Y  L  A  D  M  E  E  Q  G  S  T  M  A  M  D  V  D  D  V  D  T  I  D  M  F  G  E  G  P  L  G  G  G  E  H  L  R  L  A  D  S  D  F  F  N  L  F  Q  D  D  F  D  D  S  D  I  N  *  I  Y  Q  L  K  L  F  L  S  *  K  T  T  T  C  V  V  S  S  P  F  *  G  L  L  L  P  M  V  R  C  T  *  F  S  E  G  I  K  Q  F  F  W  M  L  *  K  :  K  K  T  N  T  *  K  K  K  E  I  K  M  Q  K  N  E  *  N  K  T  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71461" stop="71709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNPNSPIASAREEEEESTMKPMVVDYLADMEEQGSTMAMDVDDVDTIDMFGEGPLGGGEHLRLADSDFFNLFQDDFDDSDIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="72424" PGL_stop="71469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72424" e_stop="72402"/>
            <exon e_start="71871" e_stop="71469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="0.522"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.522">
            <gDNA_exon_boundary e_start="72424" e_stop="72402" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72401" i_stop="71872" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71871" e_stop="71469" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72424" stop="72402"/>
              <exon start="71871" stop="71469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714815" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCCTTCTTTATCTGAAATTGGG : AATAAGCAAGCTATGATAAAATTTCTAGAGCATCCAAAAAAATTGCTTTATTCCTTCAGAAAATTAAGTACAACGTACCATAGGCAAGAGTAAACCCTAGAAGGGAGAAGAAACAACACATGTAGTTGTTTTTTAGGAAAGGAAGAGTTTTAGTTGATAGATTTAGTTGATATCTGAGTCATCGAAATCATCCTGAAAGAGATTGAAGAAGTCGGAGTCGGCGAGTCGGAGGTGTTCGCCACCACCGAGTGGACCTTCGCCGAACATGTCGATTGTGTCCACGTCATCAACGTCCATCGCCATTGTTGATCCTTGTTCTTCCATGTCTGCTAAATAGTCTACTACCATCGGCTTCATTGTTGATTCTTCTTCTTCTTCTCTCGCTGATGCAATTGGAGAATTG</gDNA_template>
            <first_frame> F  L  L  Y  L  K  L  G :   I  S  K  L  *  *  N  F  *  S  I  Q  K  N  C  F  I  P  S  E  N  *  V  Q  R  T  I  G  K  S  K  P  *  K  G  E  E  T  T  H  V  V  V  F  *  E  R  K  S  F  S  *  *  I  *  L  I  S  E  S  S  K  S  S  *  K  R  L  K  K  S  E  S  A  S  R  R  C  S  P  P  P  S  G  P  S  P  N  M  S  I  V  S  T  S  S  T  S  I  A  I  V  D  P  C  S  S  M  S  A  K  *  S  T  T  I  G  F  I  V  D  S  S  S  S  S  L  A  D  A  I  G  E  L </first_frame>
            <second_frame>  S  F  F  I  *  N  W   : E  *  A  S  Y  D  K  I  S  R  A  S  K  K  I  A  L  F  L  Q  K  I  K  Y  N  V  P  *  A  R  V  N  P  R  R  E  K  K  Q  H  M  *  L  F  F  R  K  G  R  V  L  V  D  R  F  S  *  Y  L  S  H  R  N  H  P  E  R  D  *  R  S  R  S  R  R  V  G  G  V  R  H  H  R  V  D  L  R  R  T  C  R  L  C  P  R  H  Q  R  P  S  P  L  L  I  L  V  L  P  C  L  L  N  S  L  L  P  S  A  S  L  L  I  L  L  L  L  L  S  L  M  Q  L  E  N   </second_frame>
            <third_frame>   P  S  L  S  E  I  G  :  N  K  Q  A  M  I  K  F  L  E  H  P  K  K  L  L  Y  S  F  R  K  L  S  T  T  Y  H  R  Q  E  *  T  L  E  G  R  R  N  N  T  C  S  C  F  L  G  K  E  E  F  *  L  I  D  L  V  D  I  *  V  I  E  I  I  L  K  E  I  E  E  V  G  V  G  E  S  E  V  F  A  T  T  E  W  T  F  A  E  H  V  D  C  V  H  V  I  N  V  H  R  H  C  *  S  L  F  F  H  V  C  *  I  V  Y  Y  H  R  L  H  C  *  F  F  F  F  F  S  R  *  C  N  W  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71665" stop="71471"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSRSRRVGGVRHHRVDLRRTCRLCPRHQRPSPLLILVLPCLLNSLLPSASLLILLLLLSLMQLEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="98688" PGL_stop="97550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98688" e_stop="98355"/>
            <exon e_start="97884" e_stop="97550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="98688" e_stop="98355" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98354" i_stop="97885" i_length="470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97884" e_stop="97550" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98688" stop="98355"/>
              <exon start="97884" stop="97550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98684" stop="98355"/>
              <exon start="97884" stop="97561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTTTTTTTTTTTTGGGAATGGAAATAGTAAAGTTAATAGGTACTCCTTTTAGTTTTTTCACATATAGAGTTATTTGGGCATTAAAGCTAAAGGGAATAAATTATGAGTATATAGATGAAGACATGTCCAAGAAAAGTTCTTTGCTTGTAAAATACAATCCAATTCACAAGAAAGTTCCAGTTCTAATCCATGGTGACAAGATAATTTGTGAGTCTATGGTCATCGTTGAATACATCAACGAGACGTGGAAACTGAATCCATTACTTTCAACTGATTCATATGAACGAGCCACATCTCGATTTTGGGCTAAATATATCGAAGAAAAG : TCGCATAGTTCATGGAATGTATTTTGTTACACTGGAGAAAAGCAACAAAATGCTATAAAGGAGAGCCTTGAAATGTTCAAAACCATAGAGGAAAATGCTTTGGGAGAAAACAATATATTATTTGGTGGTGAAAATATTGGATTTGTTGACATAGCTTTTGGAGGTTATTCTCTTTGGATGGAAATTATTGAAGAAATTGTTGGGATTAAGTTACTTAATCCTCACAATTTTCCTCGTATTAACAATTGGATAAAAAAATTCAAAGAAGTTCAAACAATCAAAGATAATTTACCTAATCGTGATGAGATGTTTGTGTACATGAAAAATGCTAGGGG</gDNA_template>
            <first_frame> I  S  S  F  F  F  F  G  N  G  N  S  K  V  N  R  Y  S  F  *  F  F  H  I  *  S  Y  L  G  I  K  A  K  G  N  K  L  *  V  Y  R  *  R  H  V  Q  E  K  F  F  A  C  K  I  Q  S  N  S  Q  E  S  S  S  S  N  P  W  *  Q  D  N  L  *  V  Y  G  H  R  *  I  H  Q  R  D  V  E  T  E  S  I  T  F  N  *  F  I  *  T  S  H  I  S  I  L  G  *  I  Y  R  R  K   : V  A  *  F  M  E  C  I  L  L  H  W  R  K  A  T  K  C  Y  K  G  E  P  *  N  V  Q  N  H  R  G  K  C  F  G  R  K  Q  Y  I  I  W  W  *  K  Y  W  I  C  *  H  S  F  W  R  L  F  S  L  D  G  N  Y  *  R  N  C  W  D  *  V  T  *  S  S  Q  F  S  S  Y  *  Q  L  D  K  K  I  Q  R  S  S  N  N  Q  R  *  F  T  *  S  *  *  D  V  C  V  H  E  K  C  *  G </first_frame>
            <second_frame>  F  H  L  F  F  F  L  G  M  E  I  V  K  L  I  G  T  P  F  S  F  F  T  Y  R  V  I  W  A  L  K  L  K  G  I  N  Y  E  Y  I  D  E  D  M  S  K  K  S  S  L  L  V  K  Y  N  P  I  H  K  K  V  P  V  L  I  H  G  D  K  I  I  C  E  S  M  V  I  V  E  Y  I  N  E  T  W  K  L  N  P  L  L  S  T  D  S  Y  E  R  A  T  S  R  F  W  A  K  Y  I  E  E  K  :  S  H  S  S  W  N  V  F  C  Y  T  G  E  K  Q  Q  N  A  I  K  E  S  L  E  M  F  K  T  I  E  E  N  A  L  G  E  N  N  I  L  F  G  G  E  N  I  G  F  V  D  I  A  F  G  G  Y  S  L  W  M  E  I  I  E  E  I  V  G  I  K  L  L  N  P  H  N  F  P  R  I  N  N  W  I  K  K  F  K  E  V  Q  T  I  K  D  N  L  P  N  R  D  E  M  F  V  Y  M  K  N  A  R   </second_frame>
            <third_frame>   F  I  F  F  F  F  W  E  W  K  *  *  S  *  *  V  L  L  L  V  F  S  H  I  E  L  F  G  H  *  S  *  R  E  *  I  M  S  I  *  M  K  T  C  P  R  K  V  L  C  L  *  N  T  I  Q  F  T  R  K  F  Q  F  *  S  M  V  T  R  *  F  V  S  L  W  S  S  L  N  T  S  T  R  R  G  N  *  I  H  Y  F  Q  L  I  H  M  N  E  P  H  L  D  F  G  L  N  I  S  K  K  S :   R  I  V  H  G  M  Y  F  V  T  L  E  K  S  N  K  M  L  *  R  R  A  L  K  C  S  K  P  *  R  K  M  L  W  E  K  T  I  Y  Y  L  V  V  K  I  L  D  L  L  T  *  L  L  E  V  I  L  F  G  W  K  L  L  K  K  L  L  G  L  S  Y  L  I  L  T  I  F  L  V  L  T  I  G  *  K  N  S  K  K  F  K  Q  S  K  I  I  Y  L  I  V  M  R  C  L  C  T  *  K  M  L  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98687" stop="98355"/>
                    <exon start="97884" stop="97552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLFFFLGMEIVKLIGTPFSFFTYRVIWALKLKGINYEYIDEDMSKKSSLLVKYNPIHKKVPVLIHGDKIICESMVIVEYINETWKLNPLLSTDSYERATSRFWAKYIEEKSHSSWNVFCYTGEKQQNAIKESLEMFKTIEENALGENNILFGGENIGFVDIAFGGYSLWMEIIEEIVGIKLLNPHNFPRINNWIKKFKEVQTIKDNLPNRDEMFVYMKNAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="100323" PGL_stop="101016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100323" e_stop="101016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="100323" e_stop="101016" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100323" stop="100778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100325" stop="101016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAAAAAAACTTAAAAAATGTGTTCTTCCTACATCAAATCACCCTTTATTTTATTGATCATATTATTCATAAATATTTTAAATTTAAAAAATGTTGTTGCAAGTCCATTCCATATTCAAGTTATGAATAATATTGATCCAACTAGATTTCCCTTTAATAGTATTAAACTTCATTGCGCTTCTAAAGATAATGATATGGGATTTCATGACATTACTCCAAATAACAAATTTGAATGGTCGTTTAAAGAAGGATATTTTTCTAACACATTATTTTTTTGTCATTTTTGGTGGGGATTAAAAGAAAGAGCTTTCGAAGTGTTTAATGTCTTCCATGGATGTATCAAAAATGCACCACTCAATCCCGATACTCGTTTATGTAAATGGACAATAACAGATATAGGATTTTTTCTGGAAGATGATAAAGGAAAGAAATATATTGCTTATGCTTGGGAGCCTCTTAAAAAGTAAAAATAGTTAGTTATTATTCGCTCTGATCCCTAATTTGTTTGGGATTGTGAAGCGTGTGTCTTTTTTTTTTTTTGAGTTTTAAATATTCTTATATGGTGTACATTATTGAAGGAATAAACGCATTGTTATATGTAATGCGCATAGGGAAAATCTAGATCCTGTATATATACTAAGAAATTTATTTAATATCTATAAATATTTGATAATTATAAGGTGCGCCG</gDNA_template>
            <first_frame> K  K  K  K  K  L  K  K  C  V  L  P  T  S  N  H  P  L  F  Y  *  S  Y  Y  S  *  I  F  *  I  *  K  M  L  L  Q  V  H  S  I  F  K  L  *  I  I  L  I  Q  L  D  F  P  L  I  V  L  N  F  I  A  L  L  K  I  M  I  W  D  F  M  T  L  L  Q  I  T  N  L  N  G  R  L  K  K  D  I  F  L  T  H  Y  F  F  V  I  F  G  G  D  *  K  K  E  L  S  K  C  L  M  S  S  M  D  V  S  K  M  H  H  S  I  P  I  L  V  Y  V  N  G  Q  *  Q  I  *  D  F  F  W  K  M  I  K  E  R  N  I  L  L  M  L  G  S  L  L  K  S  K  N  S  *  L  L  F  A  L  I  P  N  L  F  G  I  V  K  R  V  S  F  F  F  F  E  F  *  I  F  L  Y  G  V  H  Y  *  R  N  K  R  I  V  I  C  N  A  H  R  E  N  L  D  P  V  Y  I  L  R  N  L  F  N  I  Y  K  Y  L  I  I  I  R  C  A  </first_frame>
            <second_frame>  K  K  K  K  N  L  K  N  V  F  F  L  H  Q  I  T  L  Y  F  I  D  H  I  I  H  K  Y  F  K  F  K  K  C  C  C  K  S  I  P  Y  S  S  Y  E  *  Y  *  S  N  *  I  S  L  *  *  Y  *  T  S  L  R  F  *  R  *  *  Y  G  I  S  *  H  Y  S  K  *  Q  I  *  M  V  V  *  R  R  I  F  F  *  H  I  I  F  L  S  F  L  V  G  I  K  R  K  S  F  R  S  V  *  C  L  P  W  M  Y  Q  K  C  T  T  Q  S  R  Y  S  F  M  *  M  D  N  N  R  Y  R  I  F  S  G  R  *  *  R  K  E  I  Y  C  L  C  L  G  A  S  *  K  V  K  I  V  S  Y  Y  S  L  *  S  L  I  C  L  G  L  *  S  V  C  L  F  F  F  L  S  F  K  Y  S  Y  M  V  Y  I  I  E  G  I  N  A  L  L  Y  V  M  R  I  G  K  I  *  I  L  Y  I  Y  *  E  I  Y  L  I  S  I  N  I  *  *  L  *  G  A  P </second_frame>
            <third_frame>   K  K  K  K  T  *  K  M  C  S  S  Y  I  K  S  P  F  I  L  L  I  I  L  F  I  N  I  L  N  L  K  N  V  V  A  S  P  F  H  I  Q  V  M  N  N  I  D  P  T  R  F  P  F  N  S  I  K  L  H  C  A  S  K  D  N  D  M  G  F  H  D  I  T  P  N  N  K  F  E  W  S  F  K  E  G  Y  F  S  N  T  L  F  F  C  H  F  W  W  G  L  K  E  R  A  F  E  V  F  N  V  F  H  G  C  I  K  N  A  P  L  N  P  D  T  R  L  C  K  W  T  I  T  D  I  G  F  F  L  E  D  D  K  G  K  K  Y  I  A  Y  A  W  E  P  L  K  K  *  K  *  L  V  I  I  R  S  D  P  *  F  V  W  D  C  E  A  C  V  F  F  F  F  *  V  L  N  I  L  I  W  C  T  L  L  K  E  *  T  H  C  Y  M  *  C  A  *  G  K  S  R  S  C  I  Y  T  K  K  F  I  *  Y  L  *  I  F  D  N  Y  K  V  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0183M06.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100343" stop="100795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMCSSYIKSPFILLIILFINILNLKNVVASPFHIQVMNNIDPTRFPFNSIKLHCASKDNDMGFHDITPNNKFEWSFKEGYFSNTLFFCHFWWGLKERAFEVFNVFHGCIKNAPLNPDTRLCKWTITDIGFFLEDDKGKKYIAYAWEPLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 316 chains have been computed
$ 
$ memory statistics:
$ 809040 bytes spliced alignments in total
$ 168 spliced alignments have been stored
$ 4815 bytes was the average size of a spliced alignment
$ 25344 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1689 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 411 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:51:05
-->
