<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:57:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312377" ref_strand="+" ref_description="SGN-U312377        Tomato 200607 #1 [103 ESTs aligned] arabidopsis/peptide: AT4G30920.1 | Symbol: None | cytosol aminopeptidase family protein, contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr4:15046463-15049379 REVERSE | Aliases: F6I18.170, F6I18_170 (evalue: 0, score=701) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 0, score=1033)">
      <seq>taggacgtataattatgtaggtatctacttattcaacttggtgaatagtttaagcacgtacttgcttgtgtatattcaaaattgaatgacatagacgcggttaaagagtagagaatgagtaaaacgtgttgacatgcaaatatcttgttctttcttccatataagtgatgcagagaaagacttaagtatacacaacaaattttctttatttacaatggcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgagctagtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50137" stop="140634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50437" g_stop="50862" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="833" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="834" r_stop="1028" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1257" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1258" r_stop="1384" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1558" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1559" r_stop="1619" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1620" r_stop="1807" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1808" r_stop="2108" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53606" i_stop="54574" i_length="969">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54575" g_stop="54626" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="2109" r_stop="2160" r_length="52" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U312377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50437" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54575" e_stop="54626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTT-TTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TAGGACGTATAATTATGTAGGTATCTACTTATTCAACTTGGTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGAGCTAGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312376" ref_strand="+" ref_description="SGN-U312376        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 8e-40, score=147) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 2e-55, score=198)">
      <seq>tgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtatatttgtttgtgactctattctttgtttggtacacgttgtacgtctactctgcttgaacttcattggatatctcgtatacgaatacaggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttagtttgagacgagaaacatgacatttggtcgttgtctttgcagtttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaatgcctaaataaaattgccactttaccttttcaatgaaatttattattcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52571" stop="53900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52871" g_stop="53600" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U312376" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52871" e_stop="53600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTA</genome_strand>
        <mrna_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAAT-AAATGCCTAAATAAAATTGCCACTTTACCTTTT-CAATGAAATTTATTATTCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333507" ref_strand="-" ref_description="SGN-U333507        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 8e-30, score=127) genbank/nr: gi|2492529|sp|Q10712|AMPL1_LYCES Aminopeptidase 1, chloroplast precursor (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (Prolyl aminopeptidase) (DR57) >gi|1236652|gb|AAC49456.1| leucine aminopeptidase (evalue: 1e-37, score=159)">
      <seq>aggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgccaacaaggttcagtggttgcatctccatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatccaggtgcatgaattgaggctatagtataggcccccttgttcagttgagttataacatgcctaaataatgattgcctctttacctttttaagtgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52805" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53105" g_stop="53205" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="379" r_length="278" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="398" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U333507" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333507" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53105" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA-AATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAA</genome_strand>
        <mrna_strand>AGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGCCAACAAGGTTCAGTGGTTGCATCTCCATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCCAGGTGCATGAATTGAGGCTATAGTATAGGCCCCCTTGTTCAGTTGAGTTATAACATGCCTAAATAATGATTGCCTCTTTACCTTTTTAAGTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333504" ref_strand="-" ref_description="SGN-U333504        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 2e-42, score=151) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 6e-48, score=194)">
      <seq>agtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttttagatgaataaaatgcctaaataaaattgcccctttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattccctctagtatcgtaacttggagatgaaagagatatatatttgttttactgcttgatgattttgttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52822" stop="140629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53122" g_stop="53205" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53691" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="471" r_length="387" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53692" i_stop="54523" i_length="832">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54524" g_stop="54572" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="520" r_length="49" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U333504" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53122" e_stop="53205"/>
          <exon e_start="53305" e_stop="53691"/>
          <exon e_start="54524" e_stop="54572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTTTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCCCTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333509" ref_strand="-" ref_description="SGN-U333509        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 3e-32, score=135) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 4e-43, score=177)">
      <seq>ttaacttgggacctggtaatggcggtgctataaatggggctctcttccccaaacaatttgtttcgaagaaggttcagtggttgcatctcaacgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgcccctttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52850" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53150" g_stop="53205" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="333" r_length="277" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="354" r_length="21" r_score="0.619"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54367" i_stop="55590" i_length="1224">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.070" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55591" g_stop="55599" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="363" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U333509" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53150" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54366"/>
          <exon e_start="55591" e_stop="55599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAAATATTTTGGGGGGTTTTTTTAAAAAAAAAAAATTTTTTTTTTTTTTTTTCCCCTTTTTTTCCCCCCTTTAAAAAAAAAGGGGGTTGGGTTTTTTTTTTTCAACCAAAGGGTTTGGGGAACAAAAGAAATTTAGGGAATTTTTTTTTTTAAAAATTGGGAAAATCCATTAAGGATTTTATGGGGGATTATTTTTTTTCCCCTTTTTTTTTTGTGGAATCTTCTTTCCTTTTTCCAATAGGTTTTAAAAAGGAAAAAGTTTTTTAACTGGTCAAGAATTCTTATTTTATAAAAAAATATAGGAATATATAAATATATATATATATATATATAAAAGATGCCCTCTTTTTTTATTAGAATTATAATTTAAATTAGATATAAAAAGCAAGTTATCAATTTTTATATTGTAATCAGACATATTCTTATTCTTTTCATTCCACCACCTATAAAATACTTTCAACACTTAAATTCGAAATAGAATATCAATAACATATAATGGGATAGATGATGCACAAAATCTTAATATGAAATTTAAGTTATAATATTACTAACTAATATGGAGTGAATGAAAAAATTCAGTTTTTATATCAAAAGTAGTATCTAAATCTCAGTAGTGAAACAAAATAAAATCATTTAGTCAGTGAACAAGTTATATATCATTCTTATAATACGAAATTTAATAATGTCAGAGTTATTTAGTTGATATATCACTAGGCATCATAATTTTTGGAGTACAATAAATGAATCTTTTTAATACAAAATATTTTATACATCAAATTACTCTTTTTTTTTTGCCAAATAGAACTTAGATATTCATATAATTATAGAAAAAAACTAATTAACTTTTATGGTCAAACAAATTCTTGAATACTATAGAATTTTTTTTATACCCCTTTTTATGAGCTTTCACTTTTTTTTACTTTCATGATAACTGAAATTCACGATCGTTGAATTAGAAATAAGAA</genome_strand>
        <mrna_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAAATGGGGCTCTCTTCCCCAAACAA...................................................................................................TTTGTTTCGAAGAAGGTTCAGTGGTTGCATCTCAACGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCCAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333505" ref_strand="-" ref_description="SGN-U333505        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 5e-12, score=68.6) genbank/nr: gi|2492529|sp|Q10712|AMPL1_LYCES Aminopeptidase 1, chloroplast precursor (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (Prolyl aminopeptidase) (DR57) >gi|1236652|gb|AAC49456.1| leucine aminopeptidase (evalue: 9e-18, score=94)">
      <seq>acatatctttattttcagacgagaaacatgacatttggtctttgtttatgcagtttgttgaccaaaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttccactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatccagttgtatgaataaaggccatagtataggccttcctgttatcttgattaataaaatgcctaaataaaattgccccttttccttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52952" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53252" g_stop="53582" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53583" i_stop="54345" i_length="763">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="352" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U333505" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53252" e_stop="53582"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>ACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACCAAAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCCACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCCAGTTGTATGAATAAAGGCCATAGTATAGGCCTTCCTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTTCCTTTTGTAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313077" ref_strand="+" ref_description="SGN-U313077        Tomato 200607 #1 [117 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 5A-1 / eIF-5A 1, identical to SP:Q9XI91 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Arabidopsis thaliana} | chr1:4773573-4774838 FORWARD | Aliases: F16A14.17(evalue: 2e-69, score=258) genbank/nr: gi|12407793|gb|AAG53650.1| eukaryotic translation initiation factor 5A-4 [Lycopersicon esculentum] >gi|20138705|sp|Q9AXQ3|IF5A4_LYCES Eukaryotic translation initiation factor 5A-4 (eIF-5A-4) (evalue: 2e-78, score=295)">
      <seq>gcggccaatcggccgaattgatcccctggttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttacttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="108784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55980" g_stop="56165" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="206" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="329" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="386" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="461" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59383" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="806" r_length="345" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U313077" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55980" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGAT</genome_strand>
        <mrna_strand>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334122" ref_strand="+" ref_description="SGN-U334122        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 5A-1 / eIF-5A 1, identical to SP:Q9XI91 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Arabidopsis thaliana} | chr1:4773573-4774838 FORWARD | Aliases: F16A14.17(evalue: 1e-52, score=203) genbank/nr: gi|12407793|gb|AAG53650.1| eukaryotic translation initiation factor 5A-4 [Lycopersicon esculentum] >gi|20138705|sp|Q9AXQ3|IF5A4_LYCES Eukaryotic translation initiation factor 5A-4 (eIF-5A-4) (evalue: 4e-55, score=218)">
      <seq>agaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtaagttttcttttacctagtatatgaagtgtataagtcatcctcttactggggaaaaacttattggatacagtgctacgtagttctattgatgacttattgcatcgttttgatgtctctagtagtttcttcatgaaattgagatttgaataatgatgaagttgtcttacctttcttttgtgagagaattcctacggngattcttttctcaatgagtcctgtcggctctttccaaggttccattgaggntcagtcccctctgggctggtcctttttgagttcgatgatgcaactgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55724" stop="58884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56024" g_stop="56165" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="265" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58584" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="621" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U334122" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56024" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACA</genome_strand>
        <mrna_strand>AGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGNGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTT-CCAAGGTTCCATTGAGGNTCAGTCCCCTCTGGGCTGGTCCTTTTTGAGTTCGATGATGCAACTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334121" ref_strand="+" ref_description="SGN-U334121        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic translation initiation factor 5A, putative / eIF-5A, putative, strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP:Q9AXQ6: Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum} | chr1:26092868-26094047 FORWARD | Aliases: F10D13.8, F10D13_8(evalue: 7e-49, score=191) genbank/nr: gi|12407793|gb|AAG53650.1| eukaryotic translation initiation factor 5A-4 [Lycopersicon esculentum] >gi|20138705|sp|Q9AXQ3|IF5A4_LYCES Eukaryotic translation initiation factor 5A-4 (eIF-5A-4) (evalue: 2e-54, score=216)">
      <seq>gttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnccggggggggggggccccccccccttcccccccctagggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57721" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="180" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59359" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="576" r_length="321" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59360" i_stop="64858" i_length="5499">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.387" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64859" g_stop="64942" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="660" r_length="84" r_score="0.536"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64943" i_stop="66404" i_length="1462">
            <donor d_prob="0.790" d_score="0.48"/>
            <acceptor a_prob="0.555" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66405" g_stop="66434" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="690" r_length="30" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U334121" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59359"/>
          <exon e_start="64859" e_stop="64942"/>
          <exon e_start="66405" e_stop="66434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCGCCACCCTCTTCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCACCACCCTCTCCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATTGAGTACTCATACCTTTTATGTATTAGTTCCATGAATGACGATGATTTGCTAGTAGCTAGGGTATGAATGATCTTAAAGTATAATCGATCGTAAAATTGATCGGAGTAATTTTTGGATAATGCAGTAGTAAATTTGGATCATATTATATCCATATAAAGCAAAATGCTCCAATTATTTGCGTGTATAATAATAACATAATTTTCTTAACATTAAATTAATGAACATCAAACACTTGGTACGAAGTTTTCTTCAAGTTAGATCTTAATTGACCTTACTATACCACCAAGTTGTGTTGCGTGATGAACGAGATTTCTTCATCCCTAATTAAAAGTCTCGAGAATATAAGCTTGAATAGAGCACTAGATCAAAGAAACTATAGCTACTTGTGATATACTAATGTAAGTTATCTATTAAACAAGATCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCCCGGCAACAGAAATTTTTTTCTTTTTGTCTTACATGACATAATCTTTCAGTATTTACTTATGCACACTTAAAAGTAAAAAAACGATAACTTAATTTATCGAGATTAGGAACATAATTTGCTAACCAAACACCCCTGATTAGGCATATTTTATATACAAGTGATTTATGATTATGTAGATAATAATTGTCCTAGATAAAGAGTATTCAATAACTAAGACAAGACAATTGAATTAACTACTTGAACAAAACTGGACAGATATTAGGTACTGGTTTATGTTTGTCTATTAATATTAATAAAATACAAAATAGATGGCCTTAAAATATTAGGTATTAGACTTGCAAATTATAGCTAAGAGACAAAAAAATAATAATTAATACTAACTCAATTGCTAAGCATTTTATAAAGGGAAACTATGATATCGATCTCTTAAAATCATTTGTTTTCAGAGATCACTAGTTTGAAATCTATCGCAGAAAAAAACCTAGTGTAATATGATAAGAATACAACACATGATGTATGAATTAGACACGTGTTACTGATGGAAAGTCCGCATGATGTGCACGTTAAGCACACGTCCCAAAATCTCTCGTCCAATAATAATTGTCCACTATTGACTTGACACATAAATTAAGAAACTGTAAAGGACATGGGTAATTTTACTAAAGCACCCTTATTAAATAATGAAAAATGAATACTATTTTAATAGAAAAGATAAATAAGACACAAAATGGCAAATTATTTATTGTCTTTATACGCTGAACAACAATATTGGACATCCTAAAATAGCGTGGTGGATAAGTAAAGATGAACGGAGAGCTGGTGAAGAAGAACTGTCAATGAGGTTTATTTTCGTTTTTAGCAATCGTGGTGTCTAAACCAACTTACACACATCTCAATTAATTTCACGAATACCCATTACCTTTTTCCGACACATATTTCGGTTAACTCTACTCATTGAGGCTTGGACAGATGGAGAAAAATAATATTTTATTTTATAATAAGAAATATCAATGAGATTTAAATAAAAGTTGTGCATCTTTAAAAATAGGGCCCTTAACAGTTGGTACACTTGCCTTGGAAATTGGAAACATATTTCACAATCCATCCCCATTTGTTATAAAGATAGTTCTCAGTTGTCAATCTACTTTGAGCTGTCAAGCACAGTTTTTGAGACATTAACAGATAACATAAGTCCCTACAAGTAGATGTATGACCTAATTCCAGGTACAATAACTAATAGATCGTGTTGCTCGGACTTTTCAAAATGATATCATATCTGTGTCGGATTTTCCAAAAACAAACACTATTTTTGGATGATCCAATCCGATATGCACCTTCCTTTTTGAGGACAGTGAGTCCACCCTTTTATGCTTCTCCGCTTAGAATACTAATAGCCTTTTATGACGTGCGTTTAACCACACATCATAAGTTTTTGTATTCTTAAACTAGGCCAAAGCTGTGGGGAAAGATGGTTGCTATGTAACTAAAATGCACAACTTTTGACTTGAAAAAAAACTTCATTCATTTATAGACATGAACAGAAGTTACTCCTAGTTAATCTTGATCTAGTAATCTAAAAATCTCAAGAATTCTATGATATGCATAGATATTGACTCATTTTCTCTGTACACAACCAGTTTTTGCAGCTAATCTATGTGAATTTAACCAGTTGTTACAAGTCTTTATATCACCTGAATAACACAAAGATGAAAATCACTCTGAGGAGAAACTCAAGTCATCGATTGATCTACATATCTCTGTTTCGTTTGCTTTGTTGGCTTGTGCTGATTCAGTTTCATCGTTGTTCGAGTCCTTCTCTTTACCTTCAGCAGATTCAACACAGTCAGGAAATCTAAAGCAACTAATAAGATGGTCATTTGTAATACCAGCAACCTGCATGAAAGAGTAGACCACAGTAGGTCCCACGCCCCGGAAACCTCTCCTAATTAGGTCTTTGCTAATCAGATCTGCTTTTGCTGTCTTCACCGGAACTTGACGAGGATATCTAAATCCACTTACTATAGGCTTGTGGTTCACAAAGCTCCAGATATACTTGTCAAATGATCCAAATTCATCTATAACCTGACATAAAACAGCATAAAATTAATTATTTAAGCTTGTGTTTCACAAAACCTGTCACTAGGCCACAAACCGGCTATGTTATTCAGAACCTCAAAAAATGTTGTTGAGTCGGTGTCTGATCCACAAAAAATCAGACATACACAGTGATTTTTGAAGAGTCCAAGCAAAATAGCACAGTCATTAAGAAGAGTTCCATTTCAAAAAGAACGTCTCTTTCCGTTTTTGGGAGCTCTTTGATTTCAACTTTTCACAAGGCATTTTAAGACCGCAATTTAAAGGATATTTGGGTTCATTCAACCTATTTTTAGTTAAAGACCACAAGATTCAATAGTCTTCTTTACTTTCTTAAAGTCCGTGCCAAATCAAAGCCAGACAAACAAATTGAAACGGAAGAAGTACTAGGTATAACCAGCTGGCATTACTTTCTAGTTTGAAATATTAAGGTAAGCCTGCCTCAAGTGAACTTGCCAGTTGTCGGTACAGATCAAACAAACTGACTTATCACCAGGACCACTATTAACTTACTTCTCTACCTAATCCAATAACTGATTGAATATCCTACATTTAAATAAGAAGAATCGAGAGTGGTCCACGGAAGAGACTCCCGATAAAATCATACTATTACTTCAGAAATTCGACAATCAGAATGATTTTTTCATTTAATTAGCCAGTAAATTGCCTATAAGTTGGAACACATGTAAGTGTTTATCCTAAATAGTTGATGTTAGCTATTGGACCACCCTATACATATTAGTAAACGCAAACAAGTTGAATCAAGGTGGAAGTGACCACTATTTCTAGCTGGATAAGAGAGCAATACCTTCAACATTTGACGAGCATTTTCAATGATGCCACGCAGTTTAAGTTCTGATAATAGTGAGCATGCCGTACCTCCAGGAGCTAAAGTCTTCTTTTCATTCAACTTGGCCACTACTATGGGATCAAAATCTGCGAATACTTCTCTGCATCACAATTTTTTTAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGAGGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGAGTAAACACTTCAGCTTTGAATATGCACATCTAGACATTTCAACTTGTCTCCGCATGTCAGTTGAACACTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGCTTCCTGCAAGATTCAATAAGAATTAGAATCTATATATTGTGTGAGAATTCTCTGGACAAGAATCTGGCAACTTACTTGTCGTCATGGACTGGAACTCCCCATTCTTCATCGTGGAAATTAGCATAAGATGGATCTGGTTAAAAGGAGAAACAATATAAGAAACTACAAGCTCAAAATTGTATAGGTCGTACTATATATATATATATAGCTTAACAAGGATTTTAATCGTCAGTATATACTCTCAAAATTATTTAAAGTTTTCTGCAGCTTTCAAATTCAGTCTGACATTTCCTATAGCCAACAGTACTGGAAGTAGAAGATAATAAGGTCTTGCTATAGCCAATTCATATACTGTGCAGCCAAAGGATTTCAAAAATACATAAACAGAAACTCGAACTTGGCCTCAGCTGGCAAGTAAGCACCCCAACTTTGAGAGTACACACATCTCAACTTGATGTCAATTGGTGATCAAACACTCTAGCTCATCCTCACAGTTTCTTTGGACACCCAACATTGAAGTTACACATAAATTTTGGAGGTGTCTCGATGATCATATTTTGCAAGTTGGACTGTTCAACTGACCCAGTCGAAATGAATTGAGGTGTCTAGACATGCATACTCAAAGTTGGAACATTAGTTGCTAGTTAAGGCCAAGTATAGTGTCTATCTATGTATTATGCATTTACTTATTCAATAGTCAGGGCACTTATACATAAAAATTGTTCCAATTTCCACAATTTTCATCTTGAAACATCTCTAAAAGAATCACCCCCTTCATGGTCACCTCCAAAAATGATGGTAAAGAAGAACAGGAAATATCAGCTAACAGGCTGCAATTAACCTTCTAATTTAGAACATTTCTCGATTAAATTTCAACAATAATTGCTTTGGACGGTGTAATATCAGAAGCAACAAACAATCAAAATCCAAATATAGTAAATTTTGAAAAAAAGAACTACCAAGAACACACCTGTATTAGGTGTCACCCAGGCACATCTTTTCTTTGATTGTGAACCATCAATTGAAGAGTCTGATATATCATCTGAAACTATCCTTTTGGACTTCGACGCCAACTGCTTCCTTCTGCTTGAGGTACTATTCATTCTATATATCCTACCAGTTGAAGCACTGCTGTGATATGAATCCGTCGAGGCATCAGAAGAACATGAAGCACTAAGTGAAAAGTTGGAATACAATGACTCTTGTCGCCTAAGTATCGAAGGAACATCAAAAGGAAGCAATGAAGGGGATGGCTGGTGACCATTTTTATCATCCATCTCAAGCTCCTCTTTTGACTTCACTATCTTTCTCGTAGGTTTCGAAATAGATTTTCTTGAACCAGGTGATCTCTGTGCCTTATTCCCAGCTAGTCCAAGAACTGGCCTTGCTTCTGAATCAGCTACATTCATTGACCTTACTCTTGAAGCTCCTGACATTGAACAAAACTCCCCTCTGCTTCTGTCTCCTAATTCAATTTTAGGCCTCCGAATCCTCAAAATTCCATACGTCTACCGCCTGCTGCAGTGACCCAAAATTTCAAAATTACTAATCTGAAGAGCCTCTCAAGATCTTACAAAACCACACATTGCTAGTACCCAGCAAAAACTCCACAAATCATACCTAACAATGCTTATGATTCCTATCTAATACCAAAACTGGGGATCTTAGTAGCTCAGTTGATTGGTTTGCTACCTGAAATTTCACCTTATTGGTGAGGGTTCGACTCCACATCTTGTAATCCCCACCCCCATTTCCCCCTTTTCGCAAAAAAAGACTATCTAAACCTCAATATCACTCTGTATAGTGTACAACCTTTCAACCCCAGAAGCACAAAACTTGCATTAGCTAAATCATCCTTCACAAATCCAAGAAATTACAACAAACCCTTCAACTTAGATGCTACAAATGACATGTATTCATTCAATCTTGACACTCAAATTGCAAAAATCTCAATAAAGATTCAACCTTTACATACAAACACTCAAACCCCACAACTTATTTCCTCTCAAAACTCAATCTTTAAAACAAACATAACTTAAAACTCACAAAAACAACCTCTTACTTCAAATGAAATGCAAATCTCAGCATAAAGTTTCAACCTTTTCAATAAACCACTCAAACCCCACAATTTTATTTCCCCTAAAAATCCTCCACCAACACCCCATCAAAGCTAAATCTCAACATCAACACATCCAAGAACTACAAAATGCATTTAAAAAAATAATCTTATCTGTCTTTGACTATACATAAACTTCCAACACACACATTTTTTTCAATAAATAAAAGATTTTACTTTACTACTTGCAAATATTTTTTTAAAAAATGTAGAGACAGCTGTTATTATTATTGAAAATAAAGAATGAACCTTGATAGATACAGATTCCATTGAGCTTTTTTTTTTTTCTTTTTTCTATCTTTTAGAAAGTATGAAACTGAGACTTTGTCTTTTCAGAACTTCATTATTCTTTGAAGGAAACAAAAG</genome_strand>
        <mrna_strand>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTNNNAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNCCGGGGGGGGGGGGCCCCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCCCCCCCCTAGGGGGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326657" ref_strand="+" ref_description="SGN-U326657        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:At1g80850.1); similar to OSJNBa0029H02.18 [Oryza sativa (japonica cultivar-group)] (GB:XP_473062.1); contains InterPro domain Methyladenine glycosylase (InterPro:IPR005019) | chr5:23484171-23486241 FORWARD | Aliases: None(evalue: 5e-91, score=331) genbank/nr: Protein(evalue: 7e-104, score=380)">
      <seq>gcagaggggagttttgttcaatgtcaggagcttcaagagtaaggtcaatgaatgtagctgattcagaagcaaggccagttcttggactagctgggaataaggcacagagatcacctggttcaagaaaatctatttcgaaacctacgagaaagatagtgaagtcaaaagaggagcttgagatggatgataaaaatggtcaccagccatccccttcattgcttccttttgatgttccttcgatacttaggcgacaagagtcattgtattccaacttttcacttagtgcttcatgttcttctgatgcctcgacggattcatatcacagcagtgcttcaactggtaggatatatagaatgaatagtacctcaagcagaaggaagcagttggcgtcgaagtccaaaaggatagtttcagatgatatatcagactcttcaattgatggttcacaatcaaagaaaagatgtgcctgggtgacacctaatacagatccatcttatgctaatttccacgatgaagaatggggagttccagtccatgacgacaagaagctattcgagctccttgtcctttgcggggcattggctgaactcacctggccttccattctttgcaagaggcacatattcagagaagtattcgcagattttgatcccatagtagtggccaagttgaatgaaaagaagactttagctcctggaggtacggcatgctcactattatcagaacttaaactgcgtggcatcattgaaaatgctcgtcaaatgttgaaggttatagatgaatttggatcatttgacaagtatatctggagctttgtgaaccacaagcctatagtaagtggatttagatatcctcgtcaagttccggtgaagacagcaaaagcagatctgattagcaaagacctaattaggagaggtttccggggcgtgggacctactgtggtctactctttcatgcaggttgctggtattacaaatgaccatcttattagttgctttagatttcctgactgtgttgaatctgctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65708" stop="61771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65408" g_stop="64923" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="544" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63955" g_stop="63872" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="628" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63871" i_stop="63292" i_length="580">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63291" g_stop="63150" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="770" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63149" i_stop="62330" i_length="820">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62329" g_stop="62071" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="1029" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U326657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65408" e_stop="64923"/>
          <exon e_start="64085" e_stop="64028"/>
          <exon e_start="63955" e_stop="63872"/>
          <exon e_start="63291" e_stop="63150"/>
          <exon e_start="62329" e_stop="62071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAGGTGTGTTCTTGGTAGTTCTTTTTTTCAAAATTTACTATATTTGGATTTTGATTGTTTGTTGCTTCTGATATTACACCGTCCAAAGCAATTATTGTTGAAATTTAATCGAGAAATGTTCTAAATTAGAAGGTTAATTGCAGCCTGTTAGCTGATATTTCCTGTTCTTCTTTACCATCATTTTTGGAGGTGACCATGAAGGGGGTGATTCTTTTAGAGATGTTTCAAGATGAAAATTGTGGAAATTGGAACAATTTTTATGTATAAGTGCCCTGACTATTGAATAAGTAAATGCATAATACATAGATAGACACTATACTTGGCCTTAACTAGCAACTAATGTTCCAACTTTGAGTATGCATGTCTAGACACCTCAATTCATTTCGACTGGGTCAGTTGAACAGTCCAACTTGCAAAATATGATCATCGAGACACCTCCAAAATTTATGTGTAACTTCAATGTTGGGTGTCCAAAGAAACTGTGAGGATGAGCTAGAGTGTTTGATCACCAATTGACATCAAGTTGAGATGTGTGTACTCTCAAAGTTGGGGTGCTTACTTGCCAGCTGAGGCCAAGTTCGAGTTTCTGTTTATGTATTTTTGAAATCCTTTGGCTGCACAGTATATGAATTGGCTATAGCAAGACCTTATTATCTTCTACTTCCAGTACTGTTGGCTATAGGAAATGTCAGACTGAATTTGAAAGCTGCAGAAAACTTTAAATAATTTTGAGAGTATATACTGACGATTAAAATCCTTGTTAAGCTATATATATATATATAGTACGACCTATACAATTTTGAGCTTGTAGTTTCTTATATTGTTTCTCCTTTTAACCAGATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAAGTAAGTTGCCAGATTCTTGTCCAGAGAATTCTCACACAATATATAGATTCTAATTCTTATTGAATCTTGCAGGAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTAAGCACTCAAACTTTGAGAGTGCACAGTGAGACACCTCAACTTTGTCTCAATTGACAACTAAACACTCCAACCCTCACCGTGTCTCGTGGACATTTGATGCAGACGTGACACATAACATTTGAAGGTGTCTAGATAATCATTTTGTAAGGTGGAGTGTTCAACTGACATGCGGAGACAAGTTGAAATGTCTAGATGTGCATATTCAAAGCTGAAGTGTTTACTCGTCAAAACTGAGGCCAAGTTTGAGTGTGTGTTTATGTAATTATGCCTATATTTTTCCTTTAAGGATCTGCTTCCAATTATTCATGTTACTTGTCAATAAAAGGGATTAACAAGTTCTAGTTCTCCTGTCCTGGGCTAGGATGGTCTGCTATGTTTTGTCTTCCGAGTTCTTTCTTGCATTACCTCGCCATCTCTCTACCATAACTTTCAGAAATTTTAAAAAAATTGTGATGCAGAGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAGGTATTGCTCTCTTATCCAGCTAGAAATAGTGGTCACTTCCACCTTGATTCAACTTGTTTGCGTTTACTAATATGTATAGGGTGGTCCAATAGCTAACATCAACTATTTAGGATAAACACTTACATGTGTTCCAACTTATAGGCAATTTACTGGCTAATTAAATGAAAAAATCATTCTGATTGTCGAATTTCTGAAGTAATAGTATGATTTTATCGGGAGTCTCTTCCGTGGACCACTCTCGATTCTTCTTATTTAAATGTAGGATATTCAATCAGTTATTGGATTAGGTAGAGAAGTAAGTTAATAGTGGTCCTGGTGATAAGTCAGTTTGTTTGATCTGTACCGACAACTGGCAAGTTCACTTGAGGCAGGCTTACCTTAATATTTCAAACTAGAAAGTAATGCCAGCTGGTTATACCTAGTACTTCTTCCGTTTCAATTTGTTTGTCTGGCTTTGATTTGGCACGGACTTTAAGAAAGTAAAGAAGACTATTGAATCTTGTGGTCTTTAACTAAAAATAGGTTGAATGAACCCAAATATCCTTTAAATTGCGGTCTTAAAATGCCTTGTGAAAAGTTGAAATCAAAGAGCTCCCAAAAACGGAAAGAGACGTTCTTTTTGAAATGGAACTCTTCTTAATGACTGTGCTATTTTGCTTGGACTCTTCAAAAATCACTGTGTATGTCTGATTTTTTGTGGATCAGACACCGACTCAACAACATTTTTTGAGGTTCTGAATAACATAGCCGGTTTGTGGCCTAGTGACAGGTTTTGTGAAACACAAGCTTAAATAATTAATTTTATGCTGTTTTATGTCAGGTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAG</genome_strand>
        <mrna_strand>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA........................................................................GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338383" ref_strand="-" ref_description="SGN-U338383        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttaaatttcttaaagttatggtagagagatggcaagggtgatgcaagaaagaactcggaagacaagacatagcggaccatcctagcccaggacaggagaactagaacttgttaatcccttttattgacaggtaacatgaataattggaagcagacccttaaaggaaaaatataggcataatcacataaatacacactcaaacgtggcctcagcccccaacactcaaccttacaaaatgatcatctagacaccttcaaatgttatgtgtcacgtctgcatcaaatgtccgcgagacacagtgagggttggagtgtttagttgtcagttgagaccaagttgaggtgtctcactgtgcactctcaaagtttgagtgcttacttgtggattgggaccaagtttgaatgtgtattatgtattatgccaccacattaactgttttcctggtgaagaaataacactttcatctatcaaataaaagaacttatcccaaacagtacctgaatatgtgcctcttgcaaagaatggaaggccaagtgagttcagcgaatgccccgcaaaggccaaggagctaacggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63008" stop="64244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63309" g_stop="63528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63529" i_stop="63595" i_length="67">
            <donor d_prob="0.851" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63596" g_stop="63952" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="578" r_length="357" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U338383" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338383" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63309" e_stop="63528"/>
          <exon e_start="63596" e_stop="63952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGA-GGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGAGTAAACACTTCAGCTTTGAATATGCACATCTAGACATTTCAACTTGTCTCCGCATGTCAGTTGAACACTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGC</genome_strand>
        <mrna_strand>TTAAATTTCTTAAAGTTATGGTAGAGAGATGGCAAGGGTGATGCAAGAAAGAACTCGGAAGACAAGACATAGCGGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAGGTAACATGAATAATTGGAAGCAGACCCTTAAAGGAAAAATATAGGCATAATCACATAAATACACACTCAAACGTGGCCTCAGCCCCCAACA...................................................................CTCAACCTTACAAAATGATCATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCGCGAGACACAGTGAGGGTTGGAGTGTTTAGTTGTCAGTTGAGACCAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCACCACATTAACTGTTTTCCTGGTGAAGAAATAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAAGTGAGTTCAGCGAATGCCCCGCAAAGGCCAAGGAGCTAACGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343648" ref_strand="+" ref_description="SGN-U343648        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | anthranilate synthase beta subunit, putative, strong similarity to anthranilate synthase beta chain GI:403434 (Arabidopsis thaliana) | chr5:23464633-23466905 REVERSE | Aliases: MTI20.15, MTI20_15(evalue: 1e-12, score=65.5) genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 3e-16, score=89)">
      <seq>gtaatagacaaggacactttccccaaagacgccctagagctaactgcatggacagaaagatggtcttgtaatggctgctcgtcacaaagtttatagacacattcagggggtacaattccatccggagagcatcatcacaagtgaaggcaagaccaatagtttacaattttatcaaactgatagagaggaaggaagaagcagaatctcaaaactagataactctctttacttgctgtacaaatttgtggtttcgcctcgataaaccgatgcaaaaatatgttatctgtctttgttgtaactttgctgagttaagttagaagttgtcaatacttgtcatggatttaattttgaaattctttagataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89152" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89452" g_stop="89556" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89557" i_stop="90314" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90315" g_stop="90573" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="366" r_length="260" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90574" i_stop="91002" i_length="429">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.131" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91003" g_stop="91022" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="386" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U343648" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89452" e_stop="89556"/>
          <exon e_start="90315" e_stop="90573"/>
          <exon e_start="91003" e_stop="91022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGATAACTGCATGGACAG-AAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAGGTAACAACCTCCATCCTTTATGAACAAAGTTAGCATTGTTATCACTCCGCTATGGATTCATTGCTCTGCGCTATCTATGACCTGGTGGAGAGATTCATATTTAGAGAATTTCTTAATGGTGATATGAACTAATGAAGGAAGAAAGTTATCGATAAGTTTGTTCAGACTTAACTCTGGATTCGCAACATTATACTTGTTGGAAAGAAAATTGTATACTTCTACTGTAAAAATCTCACGGGATACCTTTTTTCGACACTTCTATTTAATCTATACCCAGTTTTTAGAATTTTTACACATCTACTCACTTAGGACCAACTTTGTTCAGACTTAACTCTGGATTCGCAACATTATACTTGTTGGAAAGAAAATTATATACTTCTACTGTAAAAATCTCACGGGATACCTTTTTTCGACACTTCTATTTAATCTATACCCAGTTTTTAGAATTTTTACACATCTACTCACTTAGGACCAACTTTCGACATGCTGTGTTTCAATCAAAATGTCTGAAGTTACAGTTCAGGCAAAAATGGTTGAACTTTAGTTATATGTGCATGAACTTCAGGCGAGTCCTTCATCCACATGCAAAAGTCCTTGAACTTCATGCAAAAACGCCTAAACTTAGCCATATGAAACTTCAAACATTTTGTCTGAAGTTAGAATTCGTAACTTAAATATTGGCCCCAAAATCGAGTATCTTTGAACTAACTCGACTTGAATTTGATCACTCGTTTGCTTCTTGCTTGGTTAATTCTCAGGGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGA-CAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAACGTTGGTTTATCATTGAAGATGATATCATGAACATCTTGAGATATCTTCTTTCATCAGGTAAGTAAGATATCGACTTGACTACGACTACAAGACAGGCCGGAAGCGACTCGCTCCTATTCTCGTTGGGATTGGATATAGATGGGAAATCTATGGGTCAACTAGAAACAATCTCTCCACCCTACAAAGGTAGTAATGTCTGCGTACATCCTACTTTCTTCATACTCTTGGGTTTATACTATTTTAACGCGTACCTTTATTGCTCTAGTCCTTGAAAAAAAGGAAATAATCAAATATGGTATGTCTGTAGTATTATTCACCAATCAAATTGGGCTATAGTATTATTCAATTATACAAAAAAGAGACCTACTTTTTGTTAGACATAATTAATTCAGTTGGATTGGTGATAAGTGATAACAACGTGTGTTTTAGAAAAATCAGAATAATAAAAT</genome_strand>
        <mrna_strand>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGCTAACTGCATGGACAGAAAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGACCAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="113730" stop="112323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113430" g_stop="112623" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113430" e_stop="112623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGACTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="114389" stop="113141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114089" g_stop="113441" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114089" e_stop="113441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333506" ref_strand="-" ref_description="SGN-U333506        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 8e-21, score=97.8) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 1e-26, score=123)">
      <seq>ttgggacctggtaatggcggtgcaataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatccattcagtagctggccccgtatggttagattaaaaaaaaaacgcctggggttatggtggtacaactctgggggaatgggtcttcaggaactagtcaagatgtttgtggctaagcatatgagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgggtttttaaatgaataaaatgcctaaatataattgcccctttaaaaaaataaatactccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120414" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120114" g_stop="120064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119702" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="316" r_length="265" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119701" i_stop="118800" i_length="902">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118799" g_stop="118765" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="351" r_length="35" r_score="0.686"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U333506" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333506" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120114" e_stop="120064"/>
          <exon e_start="119964" e_stop="119702"/>
          <exon e_start="118799" e_stop="118765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGAC-GTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTT-GTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACTTTTTACTACATTTTTCACTATTAATTCTTATTTTTAACAAAGTACAAAAAAATGTTAAAGTGGATAAAATATTAATTTTTAAAAAAATTATACTTTCTATTATAAATTAAAAAAA</genome_strand>
        <mrna_strand>TTGGGACCTGGTAATGGCGGTGCAATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCCATTCAGTAGCTGGCCCCGTATGGTTAGATTAAAAAAAAAACGCCTGGGGTTATGGTGGTACAACTCTGGGGGAATGGGTCTTCAGGAACTAGTCAAGATGTTTGTGGCTAAGCATATGAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGGGTTTTTAAATGAATAAAATGCCTAAATATAATTGCCCCTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATAAATACTCCCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333504" ref_strand="-" ref_description="SGN-U333504        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 2e-42, score=151) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 6e-48, score=194)">
      <seq>agtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttttagatgaataaaatgcctaaataaaattgcccctttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattccctctagtatcgtaacttggagatgaaagagatatatatttgttttactgcttgatgattttgttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120447" stop="85512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120147" g_stop="120064" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119568" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="481" r_length="397" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119567" i_stop="118920" i_length="648">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118919" g_stop="118880" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="520" r_length="39" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U333504" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120147" e_stop="120064"/>
          <exon e_start="119964" e_stop="119568"/>
          <exon e_start="118919" e_stop="118880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACT</genome_strand>
        <mrna_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTTTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCCCTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGGAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACCA-GACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333509" ref_strand="-" ref_description="SGN-U333509        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 3e-32, score=135) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 4e-43, score=177)">
      <seq>ttaacttgggacctggtaatggcggtgctataaatggggctctcttccccaaacaatttgtttcgaagaaggttcagtggttgcatctcaacgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgcccctttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120419" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="120064" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="333" r_length="277" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118924" i_length="764">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118923" g_stop="118894" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="363" r_length="30" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U333509" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118923" e_stop="118894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGA</genome_strand>
        <mrna_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAAATGGGGCTCTCTTCCCCAAACAA...................................................................................................TTTGTTTCGAAGAAGGTTCAGTGGTTGCATCTCAACGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCCAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333505" ref_strand="+" ref_description="SGN-U333505        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 5e-12, score=68.6) genbank/nr: gi|2492529|sp|Q10712|AMPL1_LYCES Aminopeptidase 1, chloroplast precursor (Leucine aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline aminopeptidase) (Prolyl aminopeptidase) (DR57) >gi|1236652|gb|AAC49456.1| leucine aminopeptidase (evalue: 9e-18, score=94)">
      <seq>ttttttttttttttttttttttttttttacaaaaggaaaaggggcaattttatttaggcattttattaatcaagataacaggaaggcctatactatggcctttattcatacaactggatgcatttatttttccaaacatcattagtccctaatatgtttagccatcaacatcttgactagttcctcagcacccattccaccagagtggaaacaccataccccggggggttttttttttcatcgctccatacggggccagctacatcgagatgcaaccactgaaccttttggtcaacaaactgcataaacaaagaccaaatgtcatgtttctcgtctgaaaataaagatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96462" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118894" g_stop="118919" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.731"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118920" i_stop="119691" i_length="772">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119692" g_stop="120017" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="352" r_length="326" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U333505" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118894" e_stop="118919"/>
          <exon e_start="119692" e_stop="120017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTATTTCTTTTTAAATTTTAGTTTCAAGCACTACCAGAGTATAAGCATATTAAAATGAGGTATATCAAGTCATCAACTTGTTGAGTCAAATTGTATGGTTCTTAGTGTTATCTTTATTTAATATTTATCAACTTAATACTTTTGTCATTACGTTAAAATACATATAAAAATTGTCTCATTTAAAGGATGTTTTTCAATGTTGAGTTGATAAAATCTTACCTAAAACTAGTAACTGGCTAAAAAAAATATTAAGTACTAATAATTTCCATCTAAATAGTGTAAAAAATAAATTTTGAATAAACAAGTATATAAAGTGTATTTTAATATTAGGCCGCAAGTTGAAATTTCGCTTTAGGCCCCCAATTACGTTGAGCTGTCCCTGCTTCTTTACATATGTTAGGTTGAGTATTTAAACTAAAGGTATGTAAAATGTATTCAAATGCCTTTTATTTTTATGATTTCAAACATGTCATGTGAAAAAAATTAAAATTAAGAATTAGCAAAAAAAAAGTAAGAGATCCTGTCGTAACCTTAAAAAACGACTTTCATTGTACCAAACTCACAAACACTGATCATGTGCATGGTTGCATGGTTTTACTATCTTTATTCAATAGAAGACTTACTACAGTGATCCAGTCTCAAAGTGAAATAAATACTATAACTTCAATCTTGTTCAACAAAATCATCAAGCAGTAAAACAAATATATATCTCTTTCATCTCCAAGTTACGATACTAGAGTGAATATAATCTCTATCAGACATACGTAAATAAGACGGGAATAATAAATTTCATTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAAAAGGAAAAGGGGCAATTTTATTTAGGCATTTTATTAATCAAGATAACAGGAAGGCCTATACTATGGCCTTTATTCATACAACTGGATGCATTTATTTTTCCAAACATCATTAGTCCCTAATATGTTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTGGAAACACCATACCCCGGGGGGTTTTTTTTTTCATCGCTCCATACGGGGCCAGCTACATCGAGATGCAACCACTGAACCTTTTGGTCAACAAACTGCATAAACAAAGACCAAATGTCATGTTTCTCGTCTGAAAATAAAGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312376" ref_strand="+" ref_description="SGN-U312376        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G24200.1 | Symbol: None | cytosol aminopeptidase, identical to cytosol aminopeptidase SP:P30184 from (Arabidopsis thaliana); contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain | chr2:10293889-10296635 REVERSE | Aliases: F27D4.11, F27D4_11 (evalue: 8e-40, score=147) genbank/nr: gi|1236654|gb|AAC49457.1| leucine aminopeptidase >gi|7435529|pir||T07850 leucyl aminopeptidase (EC 3.4.11.1) (clone pBlap2) precursor, wound-induced - tomato (fragment) (evalue: 2e-55, score=198)">
      <seq>tgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtatatttgtttgtgactctattctttgtttggtacacgttgtacgtctactctgcttgaacttcattggatatctcgtatacgaatacaggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttagtttgagacgagaaacatgacatttggtcgttgtctttgcagtttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaatgcctaaataaaattgccactttaccttttcaatgaaatttattattcccgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120698" stop="119369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120398" g_stop="119669" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-U312376" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120398" e_stop="119669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTA</genome_strand>
        <mrna_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAAT-AAATGCCTAAATAAAATTGCCACTTTACCTTTTC-AATGAAATTTATTATTCCCGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121085" stop="122134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121385" g_stop="121833" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121385" e_stop="121833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAGACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAAGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTC-AAAAATAATTTATGTATGAAAAAAAATTAAAATATAAATTGAACTTTGATAGAAGAATCATATATACCCTTAAATA-ATTTTTTAAGAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGATATATATGAGCCACTTTTATAACGAGGGGTTTATTAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTTTAATTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322214" ref_strand="+" ref_description="SGN-U322214        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT4G30960.1 | Symbol: None | CBL-interacting protein kinase 6 (CIPK6), identical to CBL-interacting protein kinase 6 (Arabidopsis thaliana) gi:9280634:gb:AAF86505 | chr4:15067059-15069016 FORWARD | Aliases: F6I18.130, F6I18_130 (evalue: 6e-23, score=71.6) genbank/nr: gi|4884974|gb|AAD31900.1| putative serine/threonine protein kinase [Mesembryanthemum crystallinum](evalue: 2e-21, score=77.4)">
      <seq>aaacctaaaggagcttagccgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctgttttgtatggtaaatatgagctcggacgagttttgggtcaaggttctttcgctaaagtataccatgctcgtaacgtggtaacaggggagaatatagcaatgaaagttgttggaaaagagaaggtgataaaagtaggaatgatggagcaaatcaaaagagaaatctccgtcatgaaaatggtgaaaacatccaaacatagtcgagcttcacgaagttatggcaagcaaaacgaagatttacttccccatggaatacgttaaaggcggtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122570" stop="123940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122870" g_stop="123640" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U322214" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122870" e_stop="123640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTG-AAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCGCCATGGAATACGTTAAAGGCGGTGAATT</genome_strand>
        <mrna_strand>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTGAAAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCCCCATGGAATACGTTAAAGGCGGTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325266" ref_strand="+" ref_description="SGN-U325266        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G30960.1 | Symbol: None | CBL-interacting protein kinase 6 (CIPK6), identical to CBL-interacting protein kinase 6 (Arabidopsis thaliana) gi:9280634:gb:AAF86505 | chr4:15067059-15069016 FORWARD | Aliases: F6I18.130, F6I18_130 (evalue: 3e-110, score=395) genbank/nr: gi|21954717|gb|AAM83095.1| SOS2-like protein kinase [Glycine max](evalue: 2e-120, score=435)">
      <seq>cagagatttaaagcctgagaatttgctgttagatgaagaaggcaatcttaaggtaaccgatttcggacttagtgcttttactgatcatttaaggcaagatggtttattgcatacaacttgtggtactcctgcttatgttgcccctgaagtacttggtaatcatggatatgatggtgcaacatcagatatttggtcatgtggagtgattctttatgtgcttttagctggttttttaccatttcaagatgataatatcatggctatgtataagaaaattcacaagggtgatttcaagtgtccaccttggatgtcatctgatgcaaagaagttgattgtaaagatgttggatccgaatccgagaactcgaattactgcttcaaagattatggagtctaattggttcaagaagactgtgccaaggactttgaggagtaaggtggaggaagagttttctcatgtgggagacgaagattgtgtagggaaggcgaaaaagattgagtctttgaatgcttttcatatcatttcattgtcggaggggtttgatttgtctcctttgtttgaggaaaagaagaagaaggagaaggaacagttgagatttgcaacaacaaagccagctagtagtgtgatttcgaagctcgaggaagtagctaaaacgtcgaaattcagcttgaaaaggagtgattctagtgttagattgcaggggcaagagagtgggaggaaagggaagttgggaatatctgctgatatatttgctgtgacaccttcatttctggttgtggaggtgaagaaagcttgtggtgatacattggaatataatcaattctgcagcaaagagcttaggccagcactcaaggacattgtttggaaatccgcacctgagaatccaacattgcttgagtttcatgttattagagcattgcnatttgttagttttgttcctggttatgttagaattgaaatgagactcatctctgaatatgttcttgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="123446" stop="125044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123746" g_stop="124744" g_length="999"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="991" r_length="991" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U325266" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123746" e_stop="124744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTC</genome_strand>
        <mrna_strand>CAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAAC-ATTGCTTGAGTTTCATGTTATTAGAGC-ATTGCNATTTGTTAG-TTTTGTTCCTGGTTATG-TTAGAATTGAAA-TGAGAC-TCATCTCTGAA-TATGT-TCTTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339536" ref_strand="+" ref_description="SGN-U339536        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatase-related, weak similarity to CTD phosphatase-like 3 (Arabidopsis thaliana) GI:22212705; contains Pfam profiles PF02453: Reticulon, PF00533: BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting factor | chr5:23494121-23499150 FORWARD | Aliases: MTI20.26, MTI20_26(evalue: 3e-15, score=79.3) genbank/nr: putative(evalue: 2e-13, score=79.3)">
      <seq>cgtattggaggaagaaatcgacgagggaaatgataagagaagtgttgaagttaaagaaattagagtgcaagaacagaataagcttaaaaagattgtgattgaagagaagagatttcagtacaataataaaaggcaaatgccaattacttcaattaatatgaaacagtcacctcctactttaggcaatgctaatattcatcaaagtgcaacaagaaccaaatcaggtaaaatgcttgcatttctttttatgttttgcttcattcaattttgctcgtattctctataaatgttgttgtacacgtgttgcatcatccttaaatgcgctacttgacctacgtttcattttgactctttgttttcaaagcttgattctgaattcctcttttgcatcttgttgcattttcagatgaattccagtctaaacaacatagcaaactacaaagcttggttgatttagtgatgtggagaaatgtatcaaaatcagcattagtctttggaattggaacgtttgtaatcatttcatcttcatatactcaagatctcaatatcagctttatttctgcgctcgcctacttgggtctgatctatcttgctgcaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133303" stop="135268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133603" g_stop="134050" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134699" g_stop="134801" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="551" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134916" g_stop="134968" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="604" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U339536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133603" e_stop="134050"/>
          <exon e_start="134699" e_stop="134801"/>
          <exon e_start="134916" e_stop="134968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGGGTGAGTTGAATCTCTTAATATCTTTTTTAGAACTCAATGTTATACCGTATCGGCGGTAAAATTTATTTGTATTCTATATTTACACTAAATCAATGAATGCATGACATGTGTCTTTCATATGCACATTTTTCACTTGAATTTCAAGCTACTTGCGCCTATTATTTATAGGTCCAATGCCCTTACCGCTTACTCTATTAAAATGTTGGGGAAGTGTTGGGGAATTACCGGTATTCAGTACTAGCAGAGTTAAAACTGCTCATAGCTTTCGGACTTTGGCATTTCCTATTGCTCATATCCCGAAAAGACTGACCTCAATAATGTTTGCAATCATACCTTAGTTCAAGATCTACATACAAATATGTAGGACGAGATAATCTTTTCAAAGAAAAAGGAAACTAAACAATGAAAATTCACTTCATTAGTATTTCCGCTTACACAAATGTTGGAGCGAGAACAGGCACTTACTTTTGACCAACTCACTCACTTGAACTGGCCTAGGATAATTCGGAGGGGAAGTGTAGTATGTAACTCACTTTAATTTTTAATTGCTCAAGTTAAATTGGTTTTAGTATAAACATCATGTCCGTCGGGGTAAGTAACTACGCTACAACTATTAGCTCTGATTTCCTGTTAAAACATTTTCTGCAGTTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAGGTAATTAGGACCTTTAACTCAAAAAAAAACAAATCAGGTTTCTATTTCTTAATTCTTGAATCATTTTAACACAATATATTGAAGTGAACTATTCTTAATAATGGTGTTTTACAGCTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</genome_strand>
        <mrna_strand>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG..................................................................................................................CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339537" ref_strand="+" ref_description="SGN-U339537        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatase-related, weak similarity to CTD phosphatase-like 3 (Arabidopsis thaliana) GI:22212705; contains Pfam profiles PF02453: Reticulon, PF00533: BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting factor | chr5:23494121-23499150 FORWARD | Aliases: MTI20.26, MTI20_26(evalue: 3e-63, score=235) genbank/nr: putative(evalue: 2e-61, score=235)">
      <seq>ggaggaagaaatcgacgagggaaatgataagagaagtgttgaagttaaagaaattagagtgcaagaacagaataagcttaaaaagattgtgattgaagagaagagatttcagtacaataataaaaggcaaatgccaattacttcaattaatatgaaacagtcacctcctactttaggcaatgctaatattcatcaaagtgcaacaagaaccaaatcagatgaattccagtctaaacaacatagcaaactacaaagcttggttgatttagtgatgtggagaaatgtatcaaaatcagcattagtctttggaattggaacgtttgtaatcatttcatcttcatatactcaagatctcaatatcagctttatttctgcgctcgcctacttgggtctgatctatcttgctgcaatctttctctttagatccctcattcacaggagagccgttgatgttggtgaatcaagcgaatgtgtagtagaagaagaagaagtaatgtggatactgaaattgatacttcctttaataaatgagtttcttttgaaaatcagagcccttttttctggggatccttcgactacaatgaagatggcggttctgctgtttcttttggctaagttcggcaactatataactatttggaaactgtataaattgggtttttttggagttttcgtcataccaaaagtttgctcttcttattcgacacagttaacttctcacggtacattttttataagatacattagagatgcttgggaatcatgtactcacaaaaaggctattggatttgcaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133309" stop="137372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133609" g_stop="133826" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133827" i_stop="134008" i_length="182">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134009" g_stop="134050" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="260" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134699" g_stop="134801" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134916" g_stop="134990" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134991" i_stop="135424" i_length="434">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135425" g_stop="135572" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="586" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135573" i_stop="136115" i_length="543">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136116" g_stop="136185" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="656" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="136186" i_stop="136331" i_length="146">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136332" g_stop="136397" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="722" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="136398" i_stop="136996" i_length="599">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="136997" g_stop="137072" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="798" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-U339537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133609" e_stop="133826"/>
          <exon e_start="134009" e_stop="134050"/>
          <exon e_start="134699" e_stop="134801"/>
          <exon e_start="134916" e_stop="134990"/>
          <exon e_start="135425" e_stop="135572"/>
          <exon e_start="136116" e_stop="136185"/>
          <exon e_start="136332" e_stop="136397"/>
          <exon e_start="136997" e_stop="137072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGGGTGAGTTGAATCTCTTAATATCTTTTTTAGAACTCAATGTTATACCGTATCGGCGGTAAAATTTATTTGTATTCTATATTTACACTAAATCAATGAATGCATGACATGTGTCTTTCATATGCACATTTTTCACTTGAATTTCAAGCTACTTGCGCCTATTATTTATAGGTCCAATGCCCTTACCGCTTACTCTATTAAAATGTTGGGGAAGTGTTGGGGAATTACCGGTATTCAGTACTAGCAGAGTTAAAACTGCTCATAGCTTTCGGACTTTGGCATTTCCTATTGCTCATATCCCGAAAAGACTGACCTCAATAATGTTTGCAATCATACCTTAGTTCAAGATCTACATACAAATATGTAGGACGAGATAATCTTTTCAAAGAAAAAGGAAACTAAACAATGAAAATTCACTTCATTAGTATTTCCGCTTACACAAATGTTGGAGCGAGAACAGGCACTTACTTTTGACCAACTCACTCACTTGAACTGGCCTAGGATAATTCGGAGGGGAAGTGTAGTATGTAACTCACTTTAATTTTTAATTGCTCAAGTTAAATTGGTTTTAGTATAAACATCATGTCCGTCGGGGTAAGTAACTACGCTACAACTATTAGCTCTGATTTCCTGTTAAAACATTTTCTGCAGTTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAGGTAATTAGGACCTTTAACTCAAAAAAAAACAAATCAGGTTTCTATTTCTTAATTCTTGAATCATTTTAACACAATATATTGAAGTGAACTATTCTTAATAATGGTGTTTTACAGCTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAGGTATTACATTATAAAAGTTATTTAAATTACATGCATTAGCAGTGTAATTTTTTTTTATACTATCAATGTAATTTAACCGGTTATAACAAATTATTACCGAATTTTGTTGGTTCATATCATATTTTACATTAAGAGTTTACCTATTGTTATAAACTATGTTGTTCGGTGTCTCAAAAAAAGTTGTGACAGTCGTGTATGATCCTTAAAAGTTTACTACTTTTGGAGGATTCAACACACATTCATTGACTTTTTTGAAGAAACCGAACAATGTAGGTTATAAGTCTTTTAATCCGATGGTATCAAAAACATATACACCATCAATGCACAAAATCAAGTTCAGTGTCTAATTACCATCTCTTGAGATTATCCAATAACCTCTGTTTAGCATTCAATTTGACTTTTATATTATCTCCCCTTTTTGTGTGTGTAAATAGGAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAGGTAAAGAAAAGTTCATACATTTCCATTTGATTTCAATGTCCAATATAGTTTCTTTATTGTCCGCACTTGATGTTTACGCCAAATCATTATTATAGTGATTTGATGATGCCAACTTGTGCGTACGTCAACTAGTTACACGAGGTACCTGCAACCTTCCACCAACATAGGTACCGAGTAACTCAACTGACCATAGGAATTTGAGCTTGAGATTTGGTAGCTGTCAAACCATTCAGAAAAAAACATAAATTAATCATGGTTAAGTAATAGAAGTTATGTTGCCTTGACTCTTCAAAATGCACTTAGTCCATGATACATACTCCAAAACTAGTGCATTTATGGACGATCCAATACGGGTGTAAGAACATATTTTGAAAATTCGAGTAAACATAGGATAGAAGTCTATGTGCCTAAATATATATCATGTGTCTATTGGTCAATATAAATATCAAGTGCCGGTAAGTTTTATTGTTTTCCCATGTTACTTCAATTATTTACCTAATCTTGTGAACTTGCGGGAATTTGACAAGATCTTACCTCTGGCAGATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGGGTGAGAATTTTCTCTAAATTTCATATCTATAAGCAGTTCAAATAAAAATGACTTGTTCTAGTTTTTTCTTTTTGATCTTTCAGCAGACGATCATTACGAAAAATTATGCAATATGATATGAAGCTTATTGAATCCCTATTTTGCAGGTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACGGTAAGAAAGGAAAAAACTATCAATATATCCCGTGTAATCCCATAAGTGAATCTAGTGAGGTAGGATGTACGTAGAGCTTACCTTCTTACCCCTATCTTTGTGGGATAGATAGCCTGTCACCGTTATAGTTATAATTACTCAAAAAATCCATCATAATCTTAAAAAGTCTATTCAGAAAACTACAACTTTGGTTTGATAGTGAATATCACTATTTTTTTTTAAAACTTCATGTATGTTTTGGATATAATACCGTTGGTGTGGGGCTAATTTGCCATAAATCATTATCAAATTTTGGCAGTTTTTGTCACAAGTATGCAGAGGCAGTACAACATGTAGGGCTTTTGCTATATATAACCAAATTTTGGAACATCTAATAAAGTTATAGTACACGGTGCGCGGAACATCATTTTTTGTTTTATGTTGGCTCATTTATATGTTAAACCAGAGTCAAGGGTCTACCAGAAACATTCTCTCTGCGTACATCATACCATTTTTTCAGACCCCACTTGTTTGATTATATTGAGTATGTGGTCGTCGTTGTTATGTTATATGACCAATTAATAATATTCAATATTGTGATTTATAATTTTTATGTGAAGGTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</genome_strand>
        <mrna_strand>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAG......................................................................................................................................................................................ATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG..................................................................................................................CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGG..................................................................................................................................................GTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="50437" PGL_stop="55599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53105" e_stop="53205"/>
            <exon e_start="53305" e_stop="53581"/>
            <exon e_start="54346" e_stop="54366"/>
            <exon e_start="55591" e_stop="55599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.917"/>
          <exon-intron don_prob="0.000" acc_prob="0.070" e_score="0.632"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53105" e_stop="53205" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="53305" e_stop="53581" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764"/>
          </intron>
          <exon e_serial="3" e_score="0.632">
            <gDNA_exon_boundary e_start="54346" e_stop="54366" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.070">
            <gDNA_intron_boundary i_start="54367" i_stop="55590" i_length="1224"/>
          </intron>
          <exon e_serial="4" e_score="0.778">
            <gDNA_exon_boundary e_start="55591" e_stop="55599" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53105" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333507" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53150" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54366"/>
              <exon start="55591" stop="55599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333509" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA : ACAAACAAATTGAAACGAAAG : AAATAAGAA</gDNA_template>
            <first_frame> R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  :  T  N  K  L  K  R  K  :  K  *  E </first_frame>
            <second_frame>  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K :   Q  T  N  *  N  E  R :   N  K   </second_frame>
            <third_frame>   E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *   : N  K  Q  I  E  T  K   : E  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53107" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53252" e_stop="53582"/>
            <exon e_start="54346" e_stop="54366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.952"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="53252" e_stop="53582" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53583" i_stop="54345" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="0.619">
            <gDNA_exon_boundary e_start="54346" e_stop="54366" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53252" stop="53582"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333505" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAA : ACAAACAAATTGAAACGAAAG</gDNA_template>
            <first_frame> T  Y  L  Y  F  Q  T  R  N  M  T  F  G  L  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E   : N  K  Q  I  E  T  K  </first_frame>
            <second_frame>  H  I  F  I  F  R  R  E  T  *  H  L  V  F  V  Y  A  V  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  :  T  N  K  L  K  R  K </second_frame>
            <third_frame>   I  S  L  F  S  D  E  K  H  D  I  W  S  L  F  M  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  K :   Q  T  N  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53122" e_stop="53205"/>
            <exon e_start="53305" e_stop="53691"/>
            <exon e_start="54524" e_stop="54572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.952"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="53122" e_stop="53205" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="53305" e_stop="53691" e_length="387"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53692" i_stop="54523" i_length="832"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="54524" e_stop="54572" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53122" stop="53205"/>
              <exon start="53305" stop="53691"/>
              <exon start="54524" stop="54572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTT : CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L  R  M  S  D  R  D  Y  I  H  S  S  I  V  T  W  R  *  K  R  Y  I  F  V  L  L  L  D  D  F  :  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  V  C  L  I  E  I  I  F  T  L  V  S  *  L  G  D  E  R  D  I  Y  L  F  Y  C  L  M  I  F :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T  Y  V  *  *  R  L  Y  S  L  *  Y  R  N  L  A  M  K  E  I  Y  I  C  F  T  A  *  *  F   : S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53122" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="52871" e_stop="53600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="52871" e_stop="53600" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52871" stop="53600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTA</gDNA_template>
            <first_frame> *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W  Y  I  C  L  *  L  Y  S  L  F  G  T  R  C  T  S  T  L  L  E  L  H  W  I  S  R  I  R  I  Q  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  K  Y  S  S  H  H  H  S  T  T  D  I  L  V  H  S  T  Y  L  Y  F  Q  T  R  N  M  T  F  G  L  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  </first_frame>
            <second_frame>  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A  G  I  F  V  C  D  S  I  L  C  L  V  H  V  V  R  L  L  C  L  N  F  I  G  Y  L  V  Y  E  Y  R  C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T  S  T  H  P  I  I  T  L  R  L  T  F  W  Y  I  L  H  I  F  I  F  R  R  E  T  *  H  L  V  F  V  Y  A  V  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L </second_frame>
            <third_frame>   I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  V  Y  L  F  V  T  L  F  F  V  W  Y  T  L  Y  V  Y  S  A  *  T  S  L  D  I  S  Y  T  N  T  G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  V  L  I  P  S  S  L  Y  D  *  H  F  G  T  F  Y  I  S  L  F  S  D  E  K  H  D  I  W  S  L  F  M  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52987" stop="53235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLDISYTNTGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQVLIPSSLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53605"/>
            <exon e_start="54575" e_stop="54626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.991"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.038" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52605" e_stop="52778" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52866" e_stop="52926" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53018" e_stop="53205" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.987">
            <gDNA_exon_boundary e_start="53305" e_stop="53605" e_length="301"/>
          </exon>
          <intron i_serial="9" don_prob="0.038" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53606" i_stop="54574" i_length="969"/>
          </intron>
          <exon e_serial="10" e_score="0.000">
            <gDNA_exon_boundary e_start="54575" e_stop="54626" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50437" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="52006"/>
              <exon start="52089" stop="52317"/>
              <exon start="52388" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54575" stop="54626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="55980" PGL_stop="66434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55980" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55980" e_stop="56165" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.945">
            <gDNA_exon_boundary e_start="59039" e_stop="59383" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGAT</gDNA_template>
            <first_frame> I  P  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  *  Y  P  D  V  L  I  D </first_frame>
            <second_frame>  S  P  G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  N  S  I  Q  M  C  *  L   </second_frame>
            <third_frame>   P  L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *  I  V  S  R  C  V  D  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55980" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPWFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="63309" e_stop="63528"/>
            <exon e_start="63596" e_stop="63952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="63309" e_stop="63528" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63529" i_stop="63595" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="63596" e_stop="63952" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63309" stop="63528"/>
              <exon start="63596" stop="63952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338383" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGAGGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGA : CTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGC</gDNA_template>
            <first_frame> *  N  F  *  K  L  W  *  R  D  G  E  V  M  Q  E  R  T  R  K  T  K  H  S  R  P  S  *  P  R  T  G  E  L  E  L  V  N  P  F  Y  *  Q  V  T  *  I  I  G  S  R  S  L  K  E  K  Y  R  H  N  Y  I  N  T  H  S  N  L  A  S  V  L  T   : T  P  P  Y  K  M  I  I  *  T  P  S  N  V  M  C  H  V  C  I  K  C  P  R  D  T  V  R  V  G  V  F  S  C  Q  L  R  Q  S  *  G  V  S  L  C  T  L  K  V  *  V  L  T  C  G  L  G  P  S  L  N  V  Y  Y  V  L  C  Q  K  I  N  C  F  P  G  E  E  V  T  L  S  S  I  K  *  K  N  L  S  Q  T  V  P  E  Y  V  P  L  A  K  N  G  R  P  G  E  F  S  Q  C  P  A  K  D  K  E  L  E  *  </first_frame>
            <second_frame>  K  I  S  E  S  Y  G  R  E  M  A  R  *  C  K  K  E  L  G  R  Q  N  I  A  D  H  P  S  P  G  Q  E  N  *  N  L  L  I  P  F  I  D  K  *  H  E  *  L  E  A  D  P  *  R  K  N  I  G  I  I  T  *  T  H  T  Q  T  W  P  Q  F  *  R  :  L  H  L  T  K  *  L  S  R  H  L  Q  M  L  C  V  T  S  A  S  N  V  H  E  T  R  *  G  L  E  C  L  V  V  N  *  D  K  V  E  V  S  H  C  A  L  S  K  F  E  C  L  L  V  D  W  D  Q  V  *  M  C  I  M  Y  Y  A  K  K  L  T  V  F  L  V  K  K  *  H  F  H  L  S  N  K  R  T  Y  P  K  Q  Y  L  N  M  C  L  L  Q  R  M  E  G  Q  V  S  S  A  N  A  P  Q  R  T  R  S  S  N  S </second_frame>
            <third_frame>   K  F  L  K  V  M  V  E  R  W  R  G  N  A  R  K  N  S  E  D  K  T  *  Q  T  I  L  A  Q  D  R  R  T  R  T  C  *  S  L  L  L  T  S  N  M  N  N  W  K  Q  I  L  K  G  K  I  *  A  *  L  H  K  H  T  L  K  L  G  L  S  F  D  D :   S  T  L  Q  N  D  Y  L  D  T  F  K  C  Y  V  S  R  L  H  Q  M  S  T  R  H  G  E  G  W  S  V  *  L  S  I  E  T  K  L  R  C  L  T  V  H  S  Q  S  L  S  A  Y  L  W  I  G  T  K  F  E  C  V  L  C  I  M  P  K  N  *  L  F  S  W  *  R  S  N  T  F  I  Y  Q  I  K  E  L  I  P  N  S  T  *  I  C  A  S  C  K  E  W  K  A  R  *  V  Q  P  M  P  R  K  G  Q  G  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59359"/>
            <exon e_start="64859" e_stop="64942"/>
            <exon e_start="66405" e_stop="66434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="0.984"/>
          <exon-intron don_prob="0.790" acc_prob="0.555" e_score="0.536"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="59039" e_stop="59359" e_length="321"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="59360" i_stop="64858" i_length="5499"/>
          </intron>
          <exon e_serial="5" e_score="0.536">
            <gDNA_exon_boundary e_start="64859" e_stop="64942" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.790" acc_prob="0.555">
            <gDNA_intron_boundary i_start="64943" i_stop="66404" i_length="1462"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="66405" e_stop="66434" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59359"/>
              <exon start="64859" stop="64942"/>
              <exon start="66405" stop="66434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAA : AAGCAACAAACAATCAAAATCCAAATATAGTAAATTTTGAAAAAAAGAACTACCAAGAACACACCTGTATTAGGTGTCACCCAG : AACTTCATTATTCTTTGAAGGAAACAAAAG</gDNA_template>
            <first_frame> V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  :  K  Q  Q  T  I  K  I  Q  I  *  *  I  L  K  K  R  T  T  K  N  T  P  V  L  G  V  T  Q  :  N  F  I  I  L  *  R  K  Q  K </first_frame>
            <second_frame>  L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  K :   S  N  K  Q  S  K  S  K  Y  S  K  F  *  K  K  E  L  P  R  T  H  L  Y  *  V  S  P  R :   T  S  L  F  F  E  G  N  K   </second_frame>
            <third_frame>   C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *   : K  A  T  N  N  Q  N  P  N  I  V  N  F  E  K  K  N  Y  Q  E  H  T  C  I  R  C  H  P   : E  L  H  Y  S  L  K  E  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="56024" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56024" e_stop="56165" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="58228" e_stop="58584" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56024" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACA</gDNA_template>
            <first_frame> R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F  C  K  F  S  F  T  *  Y  M  K  C  I  S  H  P  L  T  G  E  K  L  I  G  Y  S  A  T  *  F  Y  *  *  L  I  A  S  F  *  C  L  *  *  F  L  H  E  I  E  I  *  I  M  M  K  L  S  Y  L  S  F  V  R  E  F  L  R  G  F  F  S  Q  *  V  L  S  A  L  S  Q  G  S  I  E  G  Q  S  P  L  G  W  S  F  *  S  S  M  M  Q  L  N  </first_frame>
            <second_frame>  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  V  S  F  L  L  P  S  I  *  S  V  *  V  I  L  L  L  G  K  N  L  L  D  T  V  L  R  S  S  I  D  D  L  L  H  R  F  D  V  S  S  S  F  F  M  K  L  R  F  E  *  *  *  S  C  L  T  F  L  L  *  E  N  S  Y  G  D  S  F  L  N  E  S  C  R  L  F  P  K  V  P  L  R  V  S  P  L  W  A  G  P  F  E  V  R  *  C  N  *  T </second_frame>
            <third_frame>   K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L  *  V  F  F  Y  L  V  Y  E  V  Y  K  S  S  S  Y  W  G  K  T  Y  W  I  Q  C  Y  V  V  L  L  M  T  Y  C  I  V  L  M  S  L  V  V  S  S  *  N  *  D  L  N  N  D  E  V  V  L  P  F  F  C  E  R  I  P  T  G  I  L  F  S  M  S  P  V  G  S  F  P  R  F  H  *  G  S  V  P  S  G  L  V  L  L  K  F  D  D  A  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56025" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58311"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSFLLPSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="65408" PGL_stop="62071"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65408" e_stop="64923"/>
            <exon e_start="64085" e_stop="64028"/>
            <exon e_start="63955" e_stop="63872"/>
            <exon e_start="63291" e_stop="63150"/>
            <exon e_start="62329" e_stop="62071"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65408" e_stop="64923" e_length="486"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64028" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63955" e_stop="63872" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="63871" i_stop="63292" i_length="580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63291" e_stop="63150" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63149" i_stop="62330" i_length="820"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62329" e_stop="62071" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65408" stop="64923"/>
              <exon start="64085" stop="64028"/>
              <exon start="63955" stop="63872"/>
              <exon start="63291" stop="63150"/>
              <exon start="62329" stop="62071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG : ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA : GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAG : AGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAG : GTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAG</gDNA_template>
            <first_frame> A  E  G  S  F  V  Q  C  Q  E  L  Q  E  *  G  Q  *  M  *  L  I  Q  K  Q  G  Q  F  L  D  *  L  G  I  R  H  R  D  H  L  V  Q  E  N  L  F  R  N  L  R  E  R  *  *  S  Q  K  R  S  L  R  W  M  I  K  M  V  T  S  H  P  L  H  C  F  L  L  M  F  L  R  Y  L  G  D  K  S  H  C  I  P  T  F  H  L  V  L  H  V  L  L  M  P  R  R  I  H  I  T  A  V  L  Q  L  V  G  Y  I  E  *  I  V  P  Q  A  E  G  S  S  W  R  R  S  P  K  G  *  F  Q  M  I  Y  Q  T  L  Q  L  M  V  H  N  Q  R  K  D  V  P  G  *  H  L  I  Q  :  I  H  L  M  L  I  S  T  M  K  N  G  E  F  Q  S  M  T  T   : R  S  Y  S  S  S  L  S  F  A  G  H  W  L  N  S  P  G  L  P  F  F  A  R  G  T  Y  S   : E  K  Y  S  Q  I  L  I  P  *  *  W  P  S  *  M  K  R  R  L  *  L  L  E  V  R  H  A  H  Y  Y  Q  N  L  N  C  V  A  S  L  K  M  L  V  K  C  *  R :   L  *  M  N  L  D  H  L  T  S  I  S  G  A  L  *  T  T  S  L  *  *  V  D  L  D  I  L  V  K  F  R  *  R  Q  Q  K  Q  I  *  L  A  K  T  *  L  G  E  V  S  G  A  W  D  L  L  W  S  T  L  S  C  R  L  L  V  L  Q  M  T  I  L  L  V  A  L  D  F  L  T  V  L  N  L  L  K </first_frame>
            <second_frame>  Q  R  G  V  L  F  N  V  R  S  F  K  S  K  V  N  E  C  S  *  F  R  S  K  A  S  S  W  T  S  W  E  *  G  T  E  I  T  W  F  K  K  I  Y  F  E  T  Y  E  K  D  S  E  V  K  R  G  A  *  D  G  *  *  K  W  S  P  A  I  P  F  I  A  S  F  *  C  S  F  D  T  *  A  T  R  V  I  V  F  Q  L  F  T  *  C  F  M  F  F  *  C  L  D  G  F  I  S  Q  Q  C  F  N  W  *  D  I  *  N  E  *  Y  L  K  Q  K  E  A  V  G  V  E  V  Q  K  D  S  F  R  *  Y  I  R  L  F  N  *  W  F  T  I  K  E  K  M  C  L  G  D  T  *  Y  R :   S  I  L  C  *  F  P  R  *  R  M  G  S  S  S  P  *  R  Q  :  E  A  I  R  A  P  C  P  L  R  G  I  G  *  T  H  L  A  F  H  S  L  Q  E  A  H  I  Q  :  R  S  I  R  R  F  *  S  H  S  S  G  Q  V  E  *  K  E  D  F  S  S  W  R  Y  G  M  L  T  I  I  R  T  *  T  A  W  H  H  *  K  C  S  S  N  V  E   : G  Y  R  *  I  W  I  I  *  Q  V  Y  L  E  L  C  E  P  Q  A  Y  S  K  W  I  *  I  S  S  S  S  S  G  E  D  S  K  S  R  S  D  *  Q  R  P  N  *  E  R  F  P  G  R  G  T  Y  C  G  L  L  F  H  A  G  C  W  Y  Y  K  *  P  S  Y  *  L  L  *  I  S  *  L  C  *  I  C  *   </second_frame>
            <third_frame>   R  G  E  F  C  S  M  S  G  A  S  R  V  R  S  M  N  V  A  D  S  E  A  R  P  V  L  G  L  A  G  N  K  A  Q  R  S  P  G  S  R  K  S  I  S  K  P  T  R  K  I  V  K  S  K  E  E  L  E  M  D  D  K  N  G  H  Q  P  S  P  S  L  L  P  F  D  V  P  S  I  L  R  R  Q  E  S  L  Y  S  N  F  S  L  S  A  S  C  S  S  D  A  S  T  D  S  Y  H  S  S  A  S  T  G  R  I  Y  R  M  N  S  T  S  S  R  R  K  Q  L  A  S  K  S  K  R  I  V  S  D  D  I  S  D  S  S  I  D  G  S  Q  S  K  K  R  C  A  W  V  T  P  N  T   : D  P  S  Y  A  N  F  H  D  E  E  W  G  V  P  V  H  D  D  K :   K  L  F  E  L  L  V  L  C  G  A  L  A  E  L  T  W  P  S  I  L  C  K  R  H  I  F  R :   E  V  F  A  D  F  D  P  I  V  V  A  K  L  N  E  K  K  T  L  A  P  G  G  T  A  C  S  L  L  S  E  L  K  L  R  G  I  I  E  N  A  R  Q  M  L  K  :  V  I  D  E  F  G  S  F  D  K  Y  I  W  S  F  V  N  H  K  P  I  V  S  G  F  R  Y  P  R  Q  V  P  V  K  T  A  K  A  D  L  I  S  K  D  L  I  R  R  G  F  R  G  V  G  P  T  V  V  Y  S  F  M  Q  V  A  G  I  T  N  D  H  L  I  S  C  F  R  F  P  D  C  V  E  S  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65406" stop="64923"/>
                    <exon start="64085" stop="64028"/>
                    <exon start="63955" stop="63872"/>
                    <exon start="63291" stop="63150"/>
                    <exon start="62329" stop="62072"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGEFCSMSGASRVRSMNVADSEARPVLGLAGNKAQRSPGSRKSISKPTRKIVKSKEELEMDDKNGHQPSPSLLPFDVPSILRRQESLYSNFSLSASCSSDASTDSYHSSASTGRIYRMNSTSSRRKQLASKSKRIVSDDISDSSIDGSQSKKRCAWVTPNTDPSYANFHDEEWGVPVHDDKKLFELLVLCGALAELTWPSILCKRHIFREVFADFDPIVVAKLNEKKTLAPGGTACSLLSELKLRGIIENARQMLKVIDEFGSFDKYIWSFVNHKPIVSGFRYPRQVPVKTAKADLISKDLIRRGFRGVGPTVVYSFMQVAGITNDHLISCFRFPDCVESAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="89452" PGL_stop="91022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89452" e_stop="89556"/>
            <exon e_start="90315" e_stop="90573"/>
            <exon e_start="91003" e_stop="91022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.131" e_score="0.988"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="89452" e_stop="89556" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89557" i_stop="90314" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="90315" e_stop="90573" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.131">
            <gDNA_intron_boundary i_start="90574" i_stop="91002" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="91003" e_stop="91022" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89452" stop="89556"/>
              <exon start="90315" stop="90573"/>
              <exon start="91003" stop="91022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGATAACTGCATGGACAGAAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAG : GGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGACAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAAC : AAAAATCAGAATAATAAAAT</gDNA_template>
            <first_frame> V  I  D  K  D  T  F  P  K  D  A  L  E  I  T  A  W  T  E  D  G  L  V  M  A  A  R  H  K  V  Y  R  H  I  Q  :  G  V  Q  F  H  P  E  S  I  I  T  S  E  G  K  T  I  V  Y  N  F  I  K  L  I  E  R  K  E  E  A  E  S  Q  N  *  I  T  L  F  T  C  C  T  N  L  W  F  R  L  D  K  P  M  Q  K  Y  V  I  C  L  C  C  N  F  A  E  L  S  *  K  L  S  I  L  V  M  D  L  I  L  K  F  F  R  *   : Q  K  S  E  *  *  N </first_frame>
            <second_frame>  *  *  T  R  T  L  S  P  K  T  P  *  R  *  L  H  G  Q  K  M  V  L  *  W  L  L  V  T  K  F  I  D  T  F  R :   G  Y  N  S  I  R  R  A  S  S  Q  V  K  A  R  Q  *  F  T  I  L  S  N  *  *  R  G  R  K  K  Q  N  L  K  T  R  *  L  S  L  L  A  V  Q  I  C  G  F  A  S  I  N  R  C  K  N  M  L  S  V  F  V  V  T  L  L  S  *  V  R  S  C  Q  Y  L  S  W  I  *  F  *  N  S  L  D  N  :  K  N  Q  N  N  K   </second_frame>
            <third_frame>   N  R  Q  G  H  F  P  Q  R  R  P  R  D  N  C  M  D  R  R  W  S  C  N  G  C  S  S  Q  S  L  *  T  H  S   : G  G  T  I  P  S  G  E  H  H  H  K  *  R  Q  D  N  S  L  Q  F  Y  Q  T  D  R  E  E  G  R  S  R  I  S  K  L  D  N  S  L  Y  L  L  Y  K  F  V  V  S  P  R  *  T  D  A  K  I  C  Y  L  S  L  L  *  L  C  *  V  K  L  E  V  V  N  T  C  H  G  F  N  F  E  I  L  *  I  T :   K  I  R  I  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89452" stop="89556"/>
                    <exon start="90315" stop="90422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIDKDTFPKDALEITAWTEDGLVMAARHKVYRHIQGVQFHPESIITSEGKTIVYNFIKLIERKEEAESQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="113430" PGL_stop="112623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113430" e_stop="112623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="113430" e_stop="112623" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113430" stop="112623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGACTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  D  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  T  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113428" stop="112625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQTVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="114089" PGL_stop="113441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114089" e_stop="113441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="114089" e_stop="113441" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114089" stop="113441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114088" stop="113441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="120398" PGL_stop="118765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120398" e_stop="119669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="120398" e_stop="119669" e_length="730"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120398" stop="119669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTA</gDNA_template>
            <first_frame> *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W  Y  I  C  L  *  L  Y  S  L  F  G  T  R  C  T  S  T  L  L  E  L  H  W  I  S  R  I  R  I  Q  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  K  Y  S  S  H  H  H  S  T  T  D  I  L  V  H  S  T  Y  L  *  F  E  T  R  N  M  T  F  G  R  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  </first_frame>
            <second_frame>  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A  G  I  F  V  C  D  S  I  L  C  L  V  H  V  V  R  L  L  C  L  N  F  I  G  Y  L  V  Y  E  Y  R  C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T  S  T  H  P  I  I  T  L  R  L  T  F  W  Y  I  L  H  I  F  S  L  R  R  E  T  *  H  L  V  V  V  F  A  V  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L </second_frame>
            <third_frame>   I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  V  Y  L  F  V  T  L  F  F  V  W  Y  T  L  Y  V  Y  S  A  *  T  S  L  D  I  S  Y  T  N  T  G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  V  L  I  P  S  S  L  Y  D  *  H  F  G  T  F  Y  I  S  L  V  *  D  E  K  H  D  I  W  S  L  S  L  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120282" stop="120034"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLDISYTNTGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQVLIPSSLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120114" e_stop="120064"/>
            <exon e_start="119964" e_stop="119702"/>
            <exon e_start="118799" e_stop="118765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="0.980"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.890"/>
          <exon-only e_score="0.686"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="120114" e_stop="120064" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.890">
            <gDNA_exon_boundary e_start="119964" e_stop="119702" e_length="263"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119701" i_stop="118800" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="0.686">
            <gDNA_exon_boundary e_start="118799" e_stop="118765" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120114" stop="120064"/>
              <exon start="119964" stop="119702"/>
              <exon start="118799" stop="118765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333506" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTA : AAAAAAATTATACTTTCTATTATAAATTAAAAAAA</gDNA_template>
            <first_frame> L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  * :   K  K  L  Y  F  L  L  *  I  K  K  </first_frame>
            <second_frame>  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F   : K  K  N  Y  T  F  Y  Y  K  L  K  K </second_frame>
            <third_frame>   G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  :  K  K  I  I  L  S  I  I  N  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120119" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118923" e_stop="118894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="0.946"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.953"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="120119" e_stop="120064" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118924" i_length="764"/>
          </intron>
          <exon e_serial="3" e_score="0.733">
            <gDNA_exon_boundary e_start="118923" e_stop="118894" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118923" stop="118894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333509" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AAACTAAAATTTAAAAAGAAATAAAAAAGA</gDNA_template>
            <first_frame> L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  K  L  K  F  K  K  K  *  K  R </first_frame>
            <second_frame>  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   N  *  N  L  K  R  N  K  K   </second_frame>
            <third_frame>   N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  T  K  I  *  K  E  I  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="120147" e_stop="120064"/>
            <exon e_start="119964" e_stop="119568"/>
            <exon e_start="118919" e_stop="118880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120147" e_stop="120064" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="119964" e_stop="119568" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119567" i_stop="118920" i_length="648"/>
          </intron>
          <exon e_serial="3" e_score="0.650">
            <gDNA_exon_boundary e_start="118919" e_stop="118880" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120147" stop="120064"/>
              <exon start="119964" stop="119568"/>
              <exon start="118919" stop="118880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAG : TAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACT</gDNA_template>
            <first_frame> S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S  Y  L  R  M  S  D  R  D  Y  I  H  S  S  I  V  T  W  R  *  K  R  Y  I  F  V  L  L  L  D  D  F  V  E  Q   : V  K  F  K  K  K  *  K  R  I  G  N  S   </first_frame>
            <second_frame>  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  I  Y  V  C  L  I  E  I  I  F  T  L  V  S  *  L  G  D  E  R  D  I  Y  L  F  Y  C  L  M  I  L  L  N  K  :  *  N  L  K  R  N  K  K  E  L  V  I  H  </second_frame>
            <third_frame>   Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L  F  T  Y  V  *  *  R  L  Y  S  L  *  Y  R  N  L  E  M  K  E  I  Y  I  C  F  T  A  *  *  F  C  *  T  S :   K  I  *  K  E  I  K  K  N  W  *  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120147" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="118894" PGL_stop="120017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118894" e_stop="118919"/>
            <exon e_start="119692" e_stop="120017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.731"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.731">
            <gDNA_exon_boundary e_start="118894" e_stop="118919" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118920" i_stop="119691" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="119692" e_stop="120017" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118894" stop="118919"/>
              <exon start="119692" stop="120017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333505" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTTATTTCTTTTTAAATTTTA : TTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGT</gDNA_template>
            <first_frame> S  F  L  F  L  F  K  F  Y :   L  K  R  *  S  G  N  F  I  *  A  F  Y  S  S  R  K  Q  E  S  L  F  Y  C  L  Y  S  Y  N  L  M  H  L  F  S  Q  T  S  *  V  P  N  M  L  S  H  Q  H  L  D  *  F  L  S  T  H  S  T  R  V  E  T  P  *  P  V  A  F  F  F  S  S  L  H  T  G  P  A  T  S  R  C  N  H  *  T  F  S  S  T  N  C  K  D  N  D  Q  M  S  C  F  S  S  Q  T  K  D  M  </first_frame>
            <second_frame>  L  F  Y  F  F  L  N  F   : I  *  K  G  K  V  A  I  L  F  R  H  F  I  H  L  E  N  K  K  A  Y  S  I  A  F  I  H  T  T  *  C  I  Y  F  L  K  H  H  E  S  L  I  C  L  A  I  N  I  L  T  S  S  S  A  P  I  P  P  E  L  K  H  H  N  P  W  R  F  S  F  H  R  S  I  R  G  Q  L  R  R  D  A  T  T  E  P  S  R  Q  Q  T  A  K  T  T  T  K  C  H  V  S  R  L  K  L  K  I  C </second_frame>
            <third_frame>   F  F  I  S  F  *  I  L  :  F  E  K  V  K  W  Q  F  Y  L  G  I  L  F  I  *  K  T  R  K  P  I  L  L  P  L  F  I  Q  L  D  A  F  I  F  S  N  I  M  S  P  *  Y  A  *  P  S  T  S  *  L  V  P  Q  H  P  F  H  Q  S  *  N  T  I  T  R  G  V  F  L  F  I  A  P  Y  G  A  S  Y  V  E  M  Q  P  L  N  L  L  V  N  K  L  Q  R  Q  R  P  N  V  M  F  L  V  S  N  *  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119784" stop="120017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIYFLKHHESLICLAINILTSSSAPIPPELKHHNPWRFSFHRSIRGQLRRDATTEPSRQQTAKTTTKCHVSRLKLKIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="121385" PGL_stop="121833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121385" e_stop="121833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="121385" e_stop="121833" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121385" stop="121833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAGACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAAGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAATAATTTATGTATGAAAAAAAATTAAAATATAAATTGAACTTTGATAGAAGAATCATATATACCCTTAAATAATTTTTTAAGAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGATATATATGAGCCACTTTTATAACGAGGGGTTTATTAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTTTAATTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  D  T  K  K  *  F  N  F  L  F  F  K  L  K  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  I  I  Y  V  *  K  K  I  K  I  *  I  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  E  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  D  K  D  I  Y  E  P  L  L  *  R  G  V  Y  *  L  Q  M  T  K  L  K  G  I  S  D  P  F  P  F  N   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  *  T  Q  K  N  S  L  I  F  Y  S  L  N  *  R  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  *  F  M  Y  E  K  K  L  K  Y  K  L  N  F  D  R  R  I  I  Y  T  L  K  *  F  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  I  R  I  Y  M  S  H  F  Y  N  E  G  F  I  S  S  K  *  Q  S  *  R  V  Y  Q  T  L  F  P  L  I  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  R  H  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  N  N  L  C  M  K  K  N  *  N  I  N  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  R  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  Y  I  *  A  T  F  I  T  R  G  L  L  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="122870" PGL_stop="123640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122870" e_stop="123640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="122870" e_stop="123640" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122870" stop="123640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322214" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTGAAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCGCCATGGAATACGTTAAAGGCGGTGAATT</gDNA_template>
            <first_frame> K  P  K  G  A  *  P  S  L  S  F  T  N  P  R  E  T  K  P  K  P  Q  F  L  V  P  I  L  G  M  Q  R  D  D  R  Q  I  P  S  F  *  F  D  F  R  R  L  K  A  P  N  F  T  S  R  S  *  P  E  L  P  S  E  L  S  P  E  T  R  R  R  R  V  N  S  F  T  K  T  P  F  F  S  Y  K  P  K  P  I  L  F  F  L  T  K  S  I  Y  P  F  *  I  S  F  V  G  G  R  S  F  H  R  K  H  V  G  D  E  *  T  H  L  P  H  F  T  S  I  *  T  H  Q  F  F  F  Q  K  S  N  T  L  F  D  L  A  S  E  K  L  L  N  F  A  E  P  V  F  Y  N  G  D  R  R  K  M  C  C  F  V  W  *  I  *  A  R  T  S  F  G  S  R  F  F  R  *  S  I  P  C  S  *  R  G  N  R  G  E  Y  S  N  E  S  C  W  K  R  E  G  D  K  S  R  N  D  G  A  N  Q  K  R  N  L  R  H  E  N  G  E  T  S  K  H  S  R  A  S  R  S  Y  G  K  Q  N  E  D  L  L  R  H  G  I  R  *  R  R  *  I </first_frame>
            <second_frame>  N  L  K  E  L  S  R  R  *  V  L  Q  T  L  E  R  Q  N  L  N  L  S  F  W  F  R  F  W  E  C  R  E  M  I  G  K  S  L  L  S  S  L  I  F  G  G  L  K  P  Q  I  S  L  P  G  V  S  R  N  C  H  R  N  C  H  R  K  H  V  E  D  G  *  T  H  S  P  K  P  P  F  S  V  I  N  Q  N  P  F  F  F  S  *  Q  K  V  Y  T  L  F  E  F  R  S  S  A  A  G  V  S  T  G  N  T  S  E  T  S  K  P  T  Y  L  I  S  L  P  F  K  P  I  N  F  F  F  K  N  R  T  P  F  S  I  L  L  Q  K  S  C  *  I  S  Q  N  Q  C  F  I  M  G  T  E  E  K  C  A  V  L  Y  G  K  Y  E  L  G  R  V  L  G  Q  G  S  F  A  K  V  Y  H  A  R  N  V  V  T  G  E  N  I  A  M  K  V  V  G  K  E  K  V  I  K  V  G  M  M  E  Q  I  K  R  E  I  S  V  M  K  M  V  K  H  P  N  I  V  E  L  H  E  V  M  A  S  K  T  K  I  Y  F  A  M  E  Y  V  K  G  G  E   </second_frame>
            <third_frame>   T  *  R  S  L  A  V  V  E  F  Y  K  P  *  R  D  K  T  *  T  S  V  F  G  S  D  F  G  N  A  E  R  *  *  A  N  P  F  F  L  V  *  F  S  E  A  *  S  P  K  F  H  F  P  E  L  A  G  I  A  I  G  I  V  T  G  N  T  *  K  T  G  E  L  I  H  Q  N  P  L  F  Q  L  *  T  K  T  H  S  F  F  L  N  K  K  Y  I  P  F  L  N  F  V  R  R  R  P  E  F  P  P  E  T  R  R  R  R  V  N  P  P  T  S  F  H  F  H  L  N  P  S  I  F  F  S  K  I  E  H  P  F  R  S  C  F  R  K  V  A  K  F  R  R  T  S  V  L  *  W  G  Q  K  K  N  V  L  F  C  M  V  N  M  S  S  D  E  F  W  V  K  V  L  S  L  K  Y  T  M  L  V  T  W  *  Q  G  R  I  *  Q  *  K  L  L  E  K  R  R  *  *  K  *  E  *  W  S  K  S  K  E  K  S  P  S  *  K  W  *  N  I  Q  T  *  S  S  F  T  K  L  W  Q  A  K  R  R  F  T  S  P  W  N  T  L  K  A  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123321" stop="123638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQNQCFIMGTEEKCAVLYGKYELGRVLGQGSFAKVYHARNVVTGENIAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKTKIYFAMEYVKGGE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123124" stop="123345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKTHSFFLNKKYIPFLNFVRRRPEFPPETRRRRVNPPTSFHFHLNPSIFFSKIEHPFRSCFRKVAKFRRTSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="123746" PGL_stop="124744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123746" e_stop="124744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="123746" e_stop="124744" e_length="999"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123746" stop="124744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTC</gDNA_template>
            <first_frame> Q  R  F  K  A  *  E  F  A  V  R  *  R  R  Q  S  *  G  N  R  F  R  T  *  C  F  Y  *  S  F  K  A  R  W  F  I  A  Y  N  L  W  Y  S  C  L  C  C  P  *  S  T  W  *  S  W  I  *  W  C  N  I  R  Y  L  V  M  W  S  D  S  L  C  A  F  S  W  F  F  T  I  S  R  *  *  Y  H  G  Y  V  *  E  N  S  Q  G  *  F  Q  V  S  T  L  D  V  I  *  C  K  E  V  D  C  K  D  V  G  S  E  S  E  N  S  N  Y  C  F  K  D  Y  G  V  *  L  V  Q  E  D  C  A  K  D  F  E  E  *  G  G  G  R  V  F  S  C  G  R  R  R  L  C  R  E  G  E  K  D  *  V  F  E  C  F  S  Y  H  F  I  V  G  G  V  *  F  V  S  F  V  *  G  K  E  E  E  G  E  G  T  V  E  I  C  N  N  K  A  S  *  *  C  D  F  E  A  R  G  S  S  *  N  V  E  I  Q  L  E  K  E  *  F  *  C  *  I  A  G  A  R  E  W  E  E  R  E  V  G  N  I  C  *  Y  I  C  C  D  T  F  I  S  G  C  G  G  E  E  S  L  W  *  Y  I  G  I  *  S  I  L  Q  Q  R  A  *  A  S  T  Q  G  H  C  L  E  I  R  T  *  E  S  N  N  C  L  S  F  M  L  L  E  Q  L  H  L  F  S  F  C  S  C  Y  C  L  D  L  K  L  R  L  H  L  *  S  M  S  L  E  F </first_frame>
            <second_frame>  R  D  L  K  P  E  N  L  L  L  D  E  E  G  N  L  K  V  T  D  F  G  L  S  A  F  T  D  H  L  R  Q  D  G  L  L  H  T  T  C  G  T  P  A  Y  V  A  P  E  V  L  G  N  H  G  Y  D  G  A  T  S  D  I  W  S  C  G  V  I  L  Y  V  L  L  A  G  F  L  P  F  Q  D  D  N  I  M  A  M  Y  K  K  I  H  K  G  D  F  K  C  P  P  W  M  S  S  D  A  K  K  L  I  V  K  M  L  D  P  N  P  R  T  R  I  T  A  S  K  I  M  E  S  N  W  F  K  K  T  V  P  R  T  L  R  S  K  V  E  E  E  F  S  H  V  G  D  E  D  C  V  G  K  A  K  K  I  E  S  L  N  A  F  H  I  I  S  L  S  E  G  F  D  L  S  P  L  F  E  E  K  K  K  K  E  K  E  Q  L  R  F  A  T  T  K  P  A  S  S  V  I  S  K  L  E  E  V  A  K  T  S  K  F  S  L  K  R  S  D  S  S  V  R  L  Q  G  Q  E  S  G  R  K  G  K  L  G  I  S  A  D  I  F  A  V  T  P  S  F  L  V  V  E  V  K  K  A  C  G  D  T  L  E  Y  N  Q  F  C  S  K  E  L  R  P  A  L  K  D  I  V  W  K  S  A  P  E  N  P  T  I  A  *  V  S  C  Y  *  S  N  C  I  C  L  V  F  V  L  V  I  V  *  I  *  N  *  D  F  I  S  E  V  C  L  L  N   </second_frame>
            <third_frame>   E  I  *  S  L  R  I  C  C  *  M  K  K  A  I  L  R  *  P  I  S  D  L  V  L  L  L  I  I  *  G  K  M  V  Y  C  I  Q  L  V  V  L  L  L  M  L  P  L  K  Y  L  V  I  M  D  M  M  V  Q  H  Q  I  F  G  H  V  E  *  F  F  M  C  F  *  L  V  F  Y  H  F  K  M  I  I  S  W  L  C  I  R  K  F  T  R  V  I  S  S  V  H  L  G  C  H  L  M  Q  R  S  *  L  *  R  C  W  I  R  I  R  E  L  E  L  L  L  Q  R  L  W  S  L  I  G  S  R  R  L  C  Q  G  L  *  G  V  R  W  R  K  S  F  L  M  W  E  T  K  I  V  *  G  R  R  K  R  L  S  L  *  M  L  F  I  S  F  H  C  R  R  G  L  I  C  L  L  C  L  R  K  R  R  R  R  R  R  N  S  *  D  L  Q  Q  Q  S  Q  L  V  V  *  F  R  S  S  R  K  *  L  K  R  R  N  S  A  *  K  G  V  I  L  V  L  D  C  R  G  K  R  V  G  G  K  G  S  W  E  Y  L  L  I  Y  L  L  *  H  L  H  F  W  L  W  R  *  R  K  L  V  V  I  H  W  N  I  I  N  S  A  A  K  S  L  G  Q  H  S  R  T  L  F  G  N  P  H  L  R  I  Q  Q  L  L  E  F  H  V  I  R  A  I  A  F  V  *  F  L  F  L  L  L  F  R  F  E  I  E  T  S  S  L  K  Y  V  S  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123747" stop="124643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDLKPENLLLDEEGNLKVTDFGLSAFTDHLRQDGLLHTTCGTPAYVAPEVLGNHGYDGATSDIWSCGVILYVLLAGFLPFQDDNIMAMYKKIHKGDFKCPPWMSSDAKKLIVKMLDPNPRTRITASKIMESNWFKKTVPRTLRSKVEEEFSHVGDEDCVGKAKKIESLNAFHIISLSEGFDLSPLFEEKKKKEKEQLRFATTKPASSVISKLEEVAKTSKFSLKRSDSSVRLQGQESGRKGKLGISADIFAVTPSFLVVEVKKACGDTLEYNQFCSKELRPALKDIVWKSAPENPTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="133603" PGL_stop="137072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133603" e_stop="134050"/>
            <exon e_start="134699" e_stop="134801"/>
            <exon e_start="134916" e_stop="134968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133603" e_stop="134050" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.862">
            <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134699" e_stop="134801" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134916" e_stop="134968" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133603" stop="134050"/>
              <exon start="134699" stop="134801"/>
              <exon start="134916" stop="134968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG : TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG : CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</gDNA_template>
            <first_frame> R  I  G  G  R  N  R  R  G  K  *  *  E  K  C  *  S  *  R  N  *  S  A  R  T  E  *  A  *  K  D  C  D  *  R  E  E  I  S  V  Q  *  *  K  A  N  A  N  Y  F  N  *  Y  E  T  V  T  S  Y  F  R  Q  C  *  Y  S  S  K  C  N  K  N  Q  I  R  *  N  A  C  I  S  F  Y  V  L  L  H  S  I  L  L  V  F  S  I  N  V  V  V  H  V  L  H  H  P  *  M  R  Y  L  T  Y  V  S  F  *  L  F  V  F  K  A  *  F  *  I  P  L  L  H  L  V  A  F  S  D  E  F  Q  S  K  Q  H  S  K  L  Q  S  L   : V  D  L  V  M  W  R  N  V  S  K  S  A  L  V  F  G  I  G  T  F  V  I  I  S  S  S  Y  T  Q  D  L  N  I  S :   F  I  S  A  L  A  Y  L  G  L  I  Y  L  A  A  I  F  </first_frame>
            <second_frame>  V  L  E  E  E  I  D  E  G  N  D  K  R  S  V  E  V  K  E  I  R  V  Q  E  Q  N  K  L  K  K  I  V  I  E  E  K  R  F  Q  Y  N  N  K  R  Q  M  P  I  T  S  I  N  M  K  Q  S  P  P  T  L  G  N  A  N  I  H  Q  S  A  T  R  T  K  S  G  K  M  L  A  F  L  F  M  F  C  F  I  Q  F  C  S  Y  S  L  *  M  L  L  Y  T  C  C  I  I  L  K  C  A  T  *  P  T  F  H  F  D  S  L  F  S  K  L  D  S  E  F  L  F  C  I  L  L  H  F  Q  M  N  S  S  L  N  N  I  A  N  Y  K  A  W  :  L  I  *  *  C  G  E  M  Y  Q  N  Q  H  *  S  L  E  L  E  R  L  *  S  F  H  L  H  I  L  K  I  S  I  S   : A  L  F  L  R  S  P  T  W  V  *  S  I  L  L  Q  S  F </second_frame>
            <third_frame>   Y  W  R  K  K  S  T  R  E  M  I  R  E  V  L  K  L  K  K  L  E  C  K  N  R  I  S  L  K  R  L  *  L  K  R  R  D  F  S  T  I  I  K  G  K  C  Q  L  L  Q  L  I  *  N  S  H  L  L  L  *  A  M  L  I  F  I  K  V  Q  Q  E  P  N  Q  V  K  C  L  H  F  F  L  C  F  A  S  F  N  F  A  R  I  L  Y  K  C  C  C  T  R  V  A  S  S  L  N  A  L  L  D  L  R  F  I  L  T  L  C  F  Q  S  L  I  L  N  S  S  F  A  S  C  C  I  F  R  *  I  P  V  *  T  T  *  Q  T  T  K  L  G :   *  F  S  D  V  E  K  C  I  K  I  S  I  S  L  W  N  W  N  V  C  N  H  F  I  F  I  Y  S  R  S  Q  Y  Q  :  L  Y  F  C  A  R  L  L  G  S  D  L  S  C  C  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133604" stop="133888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLEEEIDEGNDKRSVEVKEIRVQEQNKLKKIVIEEKRFQYNNKRQMPITSINMKQSPPTLGNANIHQSATRTKSGKMLAFLFMFCFIQFCSYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133978" stop="134050"/>
                    <exon start="134699" stop="134801"/>
                    <exon start="134916" stop="134967"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPLLHLVAFSDEFQSKQHSKLQSLVDLVMWRNVSKSALVFGIGTFVIISSSYTQDLNISFISALAYLGLIYLAAIF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133785" stop="134012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLIFIKVQQEPNQVKCLHFFLCFASFNFARILYKCCCTRVASSLNALLDLRFILTLCFQSLILNSSFASCCIFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133609" e_stop="133826"/>
            <exon e_start="134009" e_stop="134050"/>
            <exon e_start="134699" e_stop="134801"/>
            <exon e_start="134916" e_stop="134990"/>
            <exon e_start="135425" e_stop="135572"/>
            <exon e_start="136116" e_stop="136185"/>
            <exon e_start="136332" e_stop="136397"/>
            <exon e_start="136997" e_stop="137072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133609" e_stop="133826" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="133827" i_stop="134008" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134009" e_stop="134050" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.862">
            <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134699" e_stop="134801" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134916" e_stop="134990" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134991" i_stop="135424" i_length="434"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135425" e_stop="135572" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="135573" i_stop="136115" i_length="543"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="136116" e_stop="136185" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.446" acc_prob="0.971">
            <gDNA_intron_boundary i_start="136186" i_stop="136331" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="136332" e_stop="136397" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.940">
            <gDNA_intron_boundary i_start="136398" i_stop="136996" i_length="599"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="136997" e_stop="137072" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133609" stop="133826"/>
              <exon start="134009" stop="134050"/>
              <exon start="134699" stop="134801"/>
              <exon start="134916" stop="134990"/>
              <exon start="135425" stop="135572"/>
              <exon start="136116" stop="136185"/>
              <exon start="136332" stop="136397"/>
              <exon start="136997" stop="137072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAG : ATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG : TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG : CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAG : GAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAG : ATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGG : GTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACG : GTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</gDNA_template>
            <first_frame> G  G  R  N  R  R  G  K  *  *  E  K  C  *  S  *  R  N  *  S  A  R  T  E  *  A  *  K  D  C  D  *  R  E  E  I  S  V  Q  *  *  K  A  N  A  N  Y  F  N  *  Y  E  T  V  T  S  Y  F  R  Q  C  *  Y  S  S  K  C  N  K  N  Q  I  R :   *  I  P  V  *  T  T  *  Q  T  T  K  L  G :   *  F  S  D  V  E  K  C  I  K  I  S  I  S  L  W  N  W  N  V  C  N  H  F  I  F  I  Y  S  R  S  Q  Y  Q  :  L  Y  F  C  A  R  L  L  G  S  D  L  S  C  C  N  L  S  L  *  I  P  H  S  Q  :  E  S  R  *  C  W  *  I  K  R  M  C  S  R  R  R  R  S  N  V  D  T  E  I  D  T  S  F  N  K  *  V  S  F  E  N  Q  S  P  F  F  W  G  S  F  D  Y  N  E   : D  G  G  S  A  V  S  F  G  *  V  R  Q  L  Y  N  Y  L  E  T  V  *  I  G :   F  F  W  S  F  R  H  T  K  S  L  L  F  L  F  D  T  V  N  F  S  R :   Y  I  F  Y  K  I  H  *  R  C  L  G  I  M  Y  S  Q  K  G  Y  W  I  C  N  L </first_frame>
            <second_frame>  E  E  E  I  D  E  G  N  D  K  R  S  V  E  V  K  E  I  R  V  Q  E  Q  N  K  L  K  K  I  V  I  E  E  K  R  F  Q  Y  N  N  K  R  Q  M  P  I  T  S  I  N  M  K  Q  S  P  P  T  L  G  N  A  N  I  H  Q  S  A  T  R  T  K  S   : D  E  F  Q  S  K  Q  H  S  K  L  Q  S  L   : V  D  L  V  M  W  R  N  V  S  K  S  A  L  V  F  G  I  G  T  F  V  I  I  S  S  S  Y  T  Q  D  L  N  I  S :   F  I  S  A  L  A  Y  L  G  L  I  Y  L  A  A  I  F  L  F  R  S  L  I  H  R :   R  A  V  D  V  G  E  S  S  E  C  V  V  E  E  E  E  V  M  W  I  L  K  L  I  L  P  L  I  N  E  F  L  L  K  I  R  A  L  F  S  G  D  P  S  T  T  M  K  :  M  A  V  L  L  F  L  L  A  K  F  G  N  Y  I  T  I  W  K  L  Y  K  L   : G  F  F  G  V  F  V  I  P  K  V  C  S  S  Y  S  T  Q  L  T  S  H   : G  T  F  F  I  R  Y  I  R  D  A  W  E  S  C  T  H  K  K  A  I  G  F  A  I   </second_frame>
            <third_frame>   R  K  K  S  T  R  E  M  I  R  E  V  L  K  L  K  K  L  E  C  K  N  R  I  S  L  K  R  L  *  L  K  R  R  D  F  S  T  I  I  K  G  K  C  Q  L  L  Q  L  I  *  N  S  H  L  L  L  *  A  M  L  I  F  I  K  V  Q  Q  E  P  N  Q  :  M  N  S  S  L  N  N  I  A  N  Y  K  A  W  :  L  I  *  *  C  G  E  M  Y  Q  N  Q  H  *  S  L  E  L  E  R  L  *  S  F  H  L  H  I  L  K  I  S  I  S   : A  L  F  L  R  S  P  T  W  V  *  S  I  L  L  Q  S  F  S  L  D  P  S  F  T   : G  E  P  L  M  L  V  N  Q  A  N  V  *  *  K  K  K  K  *  C  G  Y  *  N  *  Y  F  L  *  *  M  S  F  F  *  K  S  E  P  F  F  L  G  I  L  R  L  Q  *  R :   W  R  F  C  C  F  F  W  L  S  S  A  T  I  *  L  F  G  N  C  I  N  W  :  V  F  L  E  F  S  S  Y  Q  K  F  A  L  L  I  R  H  S  *  L  L  T  :  V  H  F  L  *  D  T  L  E  M  L  G  N  H  V  L  T  K  R  L  L  D  L  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133610" stop="133826"/>
                    <exon start="134009" stop="134050"/>
                    <exon start="134699" stop="134801"/>
                    <exon start="134916" stop="134990"/>
                    <exon start="135425" stop="135572"/>
                    <exon start="136116" stop="136185"/>
                    <exon start="136332" stop="136397"/>
                    <exon start="136997" stop="137070"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEEIDEGNDKRSVEVKEIRVQEQNKLKKIVIEEKRFQYNNKRQMPITSINMKQSPPTLGNANIHQSATRTKSDEFQSKQHSKLQSLVDLVMWRNVSKSALVFGIGTFVIISSSYTQDLNISFISALAYLGLIYLAAIFLFRSLIHRRAVDVGESSECVVEEEEVMWILKLILPLINEFLLKIRALFSGDPSTTMKMAVLLFLLAKFGNYITIWKLYKLGFFGVFVIPKVCSSYSTQLTSHGTFFIRYIRDAWESCTHKKAIGFAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 66 chains have been computed
$ 
$ memory statistics:
$ 1478448 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 61602 bytes was the average size of a spliced alignment
$ 21000 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1750 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 91 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 01:01:09
-->
