<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:23:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42799" stop="41751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42499" g_stop="42051" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42499" e_stop="42051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCGGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGTTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAGAATTCTGAGAGAGAGACG-CTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTTCATTTATTTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42800" stop="41903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42500" g_stop="42177" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42500" e_stop="42177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCGGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGTTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42800" stop="41903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42500" g_stop="42208" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42500" e_stop="42208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCGGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGTTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42800" stop="42048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42500" g_stop="42348" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42500" e_stop="42348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325869" ref_strand="+" ref_description="SGN-E325869 [cTOC-12-N12]">
      <seq>taggacgtataattatgtaggtatctacttattcaacttggtgaatagtttaagcacgtacttgcttgtgtatattcaaaattgaatgacatagacgcggttaaagagtagagaatgagtaaaacgtgttgacatgcaaatatcttgttctttcttccatataagtgatgcagagaaagacttaagtatacacaacaaattttctttatttacaatggcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50137" stop="51765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50437" g_stop="50862" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51465" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="566" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325869" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50437" e_stop="50862"/>
          <exon e_start="51325" e_stop="51465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTT-TTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTG</genome_strand>
        <mrna_strand>TAGGACGTATAATTATGTAGGTATCTACTTATTCAACTTGGTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGT--AAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296184" ref_strand="+" ref_description="SGN-E296184 [cLET-24-A21]">
      <seq>cgagtttttctttatttacaatggcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50335" stop="51905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50630" g_stop="50862" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51605" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="514" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E296184" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50630" e_stop="50862"/>
          <exon e_start="51325" e_stop="51605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAG</genome_strand>
        <mrna_strand>CGAGTTTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744558" ref_strand="+" ref_description="SGN-E744558 [GI|1236651]">
      <seq>aaattttctttatttacaatggcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctcgttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgtcgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50332" stop="108783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50632" g_stop="50862" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="637" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="832" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1061" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1188" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1189" r_stop="1362" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1363" r_stop="1423" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1424" r_stop="1611" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1612" r_stop="1912" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54346" g_stop="54362" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1913" r_stop="1929" r_length="17" r_score="0.588"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E744558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1929</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50632" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACG</genome_strand>
        <mrna_strand>AAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTCGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTCGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324793" ref_strand="+" ref_description="SGN-E324793 [cTOC-8-K20]">
      <seq>tggcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatttcaatgggtgctaaaaatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50351" stop="51894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50651" g_stop="50862" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51594" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="482" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324793" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50651" e_stop="50862"/>
          <exon e_start="51325" e_stop="51594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACT</genome_strand>
        <mrna_strand>TGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAATGGGTGCTAAAAATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329073" ref_strand="+" ref_description="SGN-E329073 [cTOC-24-F21]">
      <seq>gcaacactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaagacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50353" stop="52031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50653" g_stop="50862" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="616" r_length="406" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51820" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="625" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E329073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50653" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGC</genome_strand>
        <mrna_strand>GCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAAGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325751" ref_strand="+" ref_description="SGN-E325751 [cTOC-15-F18]">
      <seq>acactaagagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcnaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactacgcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50356" stop="51679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50656" g_stop="50862" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51379" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="262" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325751" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50656" e_stop="50862"/>
          <exon e_start="51325" e_stop="51379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTG</genome_strand>
        <mrna_strand>ACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCNAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTACGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327600" ref_strand="+" ref_description="SGN-E327600 [cTOC-20-B19]">
      <seq>gagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactgggagtgtgctanggtcatttgaagataatangtttaggtccgagtcgaagaaaatcactttggaatctttggatattcttggactgggaactggaccctgaatagagaggaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50363" stop="52228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50663" g_stop="50862" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="606" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51928" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="722" r_length="116" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327600" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50663" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCA</genome_strand>
        <mrna_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GGAGTGTGCTANGGTCATTTGAAGATAATANGTTTAGGTCCGAGTCGAAGAAAATCACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCCTGAATAGAGAGG-AAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326573" ref_strand="+" ref_description="SGN-E326573 [cTOC-17-H6]">
      <seq>gagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagaatatagggttaggtccgagtcgaagaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50363" stop="52224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50663" g_stop="50862" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="606" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51925" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="719" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326573" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50663" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAA</genome_strand>
        <mrna_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGAATATAGGGTTAGGTCCGAGTCGAAG-AATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327496" ref_strand="+" ref_description="SGN-E327496 [cTOC-19-J16]">
      <seq>gagtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50363" stop="52030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50663" g_stop="50862" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="606" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50663" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG</genome_strand>
        <mrna_strand>GAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744557" ref_strand="+" ref_description="SGN-E744557 [GI|1236653]">
      <seq>gtttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattcactctagtatcgtaacttggagatgaaagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50365" stop="53962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50665" g_stop="50862" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="604" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="799" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="1028" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1029" r_stop="1155" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1156" r_stop="1329" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1330" r_stop="1390" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1391" r_stop="1578" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53305" g_stop="53662" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1579" r_stop="1933" r_length="355" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E744557" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1936</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50665" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGAT</genome_strand>
        <mrna_strand>GTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGC--T-TTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322630" ref_strand="+" ref_description="SGN-E322630 [cTOB-26-M21]">
      <seq>tttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50366" stop="52131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50666" g_stop="50862" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="603" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51831" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="623" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E322630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50666" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTT</genome_strand>
        <mrna_strand>TTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357992" ref_strand="+" ref_description="SGN-E357992 [cLHT-32-F9]">
      <seq>tttcttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggcattttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgtattgctcgtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctacagcttcttctgaggaggattttagtggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50366" stop="51892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50666" g_stop="50862" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51592" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="465" r_length="268" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E357992" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50666" e_stop="50862"/>
          <exon e_start="51325" e_stop="51592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTA</genome_strand>
        <mrna_strand>TTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCATTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGTATTGCTCGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTACAGCTTCTTCTGAGGAGGATTTTAGTGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325470" ref_strand="+" ref_description="SGN-E325470 [cTOC-1-F6]">
      <seq>cacgagggtttgcttttttttcatcttgcattctaacccttcagtttactaaatatcaatctatcccaaatgggctttttcatttcagtacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50376" stop="51903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50669" g_stop="50862" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51603" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="464" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325470" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50669" e_stop="50862"/>
          <exon e_start="51325" e_stop="51603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</genome_strand>
        <mrna_strand>CACGAGGGTTTGCTT-TT-TT-TTCATCTT-GCATTCTAACCCTTCAG--TTTACTAAATATCAATCTA-TCCCAAATGGGCTTTTTCATTT-CAG-TACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324162" ref_strand="+" ref_description="SGN-E324162 [cTOC-4-G18]">
      <seq>cttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctcaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaagaggattttagcggaaagtctggacaatccgtaaatctcaagtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50369" stop="51903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50669" g_stop="50862" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51603" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="473" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324162" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50669" e_stop="50862"/>
          <exon e_start="51325" e_stop="51603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</genome_strand>
        <mrna_strand>CTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTCAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAAGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAAGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328729" ref_strand="+" ref_description="SGN-E328729 [cTOC-23-B15]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctanggtcatttgaagataatanggttangtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaaactggacctgaatagagaggaaaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="52230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="599" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51930" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="718" r_length="119" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328729" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGG-AACTGGACCTGAAATAGAGAGGAAAATCAAG</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTANGGTCATTTGAAGATAATANGGTTANGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAAACTGGACCTG-AATAGAGAGGAAAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328498" ref_strand="+" ref_description="SGN-E328498 [cTOC-23-I15]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaaactggacctgaatagagaggaaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="52230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="599" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51930" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="717" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328498" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGG-AACTGGACCTGAAATAGAGAGGAAAATCAAG</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAAACTGGACCTG-AATAGAGAGG-AAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328500" ref_strand="+" ref_description="SGN-E328500 [cTOC-23-I19]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="52133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="599" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51833" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="621" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGA</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272793" ref_strand="+" ref_description="SGN-E272793 [cLEM-21-L4]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaagtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttangacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="51972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51672" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="541" r_length="348" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E272793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCT</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAAGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTANGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325687" ref_strand="+" ref_description="SGN-E325687 [cTOC-15-I6]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="51971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51671" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="540" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGC</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330165" ref_strand="+" ref_description="SGN-E330165 [cTOD-5-H10]">
      <seq>ttcattgtttgcttcttcttcttcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattcttagttccaggaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaagtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50370" stop="51903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50670" g_stop="50862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51603" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="473" r_length="280" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E330165" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50670" e_stop="50862"/>
          <exon e_start="51325" e_stop="51603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTT-CAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</genome_strand>
        <mrna_strand>TTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTTAGTTCCAGGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAAGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312017" ref_strand="+" ref_description="SGN-E312017 [cTOA-16-J6]">
      <seq>ttcatctttgcattctaaccgttttgtttttactaaatatcaatctgggcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50391" stop="51828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50691" g_stop="50862" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51528" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="376" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E312017" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50691" e_stop="50862"/>
          <exon e_start="51325" e_stop="51528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTA</genome_strand>
        <mrna_strand>TTCATCTTTGCATTCTAACCGTTTTGTTTTTACTAAATATCAATCTGGGCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323565" ref_strand="+" ref_description="SGN-E323565 [cTOC-2-O3]">
      <seq>tcatctttgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50392" stop="51908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50692" g_stop="50862" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51608" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="455" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50692" e_stop="50862"/>
          <exon e_start="51325" e_stop="51608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTT</genome_strand>
        <mrna_strand>TCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325332" ref_strand="+" ref_description="SGN-E325332 [cTOC-1-F12]">
      <seq>gatcccccgggctgcagttttattgttgcttttttttatctttgcatctaacccttcagttttactaaatatcaatctatcccaaatgggctttttcatttcagttacacccttgtgttcaaaaagaataaagaatagttattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50364" stop="51941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50694" g_stop="50862" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="199" r_length="162" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51641" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="516" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325332" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50694" e_stop="50862"/>
          <exon e_start="51325" e_stop="51641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTC</genome_strand>
        <mrna_strand>ATCTTTGCA-TCTAACCCTTCAGTTTT-ACTAAATATCAATCTA-TCCCAAATGGGCTTTTTCATTT-CAGTTACACCCTTGTGTTCAAAAAGAA-T-AAAGAATAGTT-ATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324791" ref_strand="+" ref_description="SGN-E324791 [cTOC-8-K6]">
      <seq>tgcattctaacccttcagtttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50399" stop="52011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50699" g_stop="50862" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51711" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="551" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50699" e_stop="50862"/>
          <exon e_start="51325" e_stop="51711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCT</genome_strand>
        <mrna_strand>TGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323561" ref_strand="+" ref_description="SGN-E323561 [cTOC-2-M7]">
      <seq>ttttactaaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50418" stop="51908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50718" g_stop="50862" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51608" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="429" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50718" e_stop="50862"/>
          <exon e_start="51325" e_stop="51608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTT</genome_strand>
        <mrna_strand>TTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318336" ref_strand="+" ref_description="SGN-E318336 [cTOA-29-M23]">
      <seq>taaatatcaatctagtcccaaatgggctttttcatttccagttacacccttgtgttcaaaaagaagtaaaagaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctanggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50424" stop="52214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50724" g_stop="50862" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="545" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="51914" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="648" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E318336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50724" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="51914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAAT</genome_strand>
        <mrna_strand>TAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTANGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744577" ref_strand="+" ref_description="SGN-E744577 [GI|924627]">
      <seq>agaatagttcattgcattgctggtgatactcttggtcttactaggcctaatgaaagtgatgcccctaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgaatgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50494" stop="53867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50794" g_stop="50862" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51325" g_stop="51730" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="475" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="670" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="899" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="1026" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1200" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1201" r_stop="1261" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1449" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53305" g_stop="53578" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1450" r_stop="1723" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E744577" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50794" e_stop="50862"/>
          <exon e_start="51325" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAGGTCATTATAGTTTTATTTCGTTGTAGTATTGTTCTACTACTATTTGTTGTTTTGCTTACTACGTATTTTTTCTTGAACTTTCATTAATTACGTCTTTTTAGTCTGATTTATTTGGTTGCGGTACTGTTCTACTACTATCTATTGTTTTGTTTATTACATATTGTTTCTAGAACTTTCATTACGTCTTTTTTAGTCTATTTTATTTGGTTGTAGTATTGTTATGCTATGAAATGTTGTTTTCTTTACTATATATTGTCTCTTGTACTTTCATTACGTCTTTTTTAGTCTGCTTTGGTCTTAACCCGGGGGTTTACCAAAAAAACAACCTCTCTACCTATTCACCTTTGAGGTAGAGCTAAGGTCTGCGTACATTCTGTTTTTGTTGTTGTTGTAGTTGATTCCTGTGATCTCTATTTTATAGTTTTCGGACTAAATCCTGTTTCTGTTTTTGTAACATGAAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAAT</genome_strand>
        <mrna_strand>AGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGAATG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325967" ref_strand="+" ref_description="SGN-E325967 [cTOC-12-J22]">
      <seq>aaagatatcaattggtgctaaagatactgctgtggtgcaatggcaaggagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacaatgttgtgcaggtgttatactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51021" stop="52264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51321" g_stop="51730" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="51964" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="563" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325967" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51321" e_stop="51730"/>
          <exon e_start="51812" e_stop="51964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCG</genome_strand>
        <mrna_strand>AAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACAATGTTGTGCAGGTGTTATACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325617" ref_strand="+" ref_description="SGN-E325617 [cTOC-15-H24]">
      <seq>gagacttacttgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaagctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51068" stop="52520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51368" g_stop="51730" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="558" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52221" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="691" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325617" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51368" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGA</genome_strand>
        <mrna_strand>GAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAAGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324935" ref_strand="+" ref_description="SGN-E324935 [cTOC-11-I4]">
      <seq>tgcaataggcgcgacggagaatgacatggctagagatgagaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51078" stop="52263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51378" g_stop="51730" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="51963" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="505" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51378" e_stop="51730"/>
          <exon e_start="51812" e_stop="51963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTC</genome_strand>
        <mrna_strand>TGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323214" ref_strand="+" ref_description="SGN-E323214 [cTOB-28-O9]">
      <seq>gaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcgaaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctannaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattngaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttactttcatcatttatgttttaaaactcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51117" stop="52563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="51730" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="509" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52263" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="684" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323214" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTAC</genome_strand>
        <mrna_strand>GAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCGAAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTANNAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTNGAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTTCATCATTTATGTTTTAAAACTCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323243" ref_strand="+" ref_description="SGN-E323243 [cTOB-28-M10]">
      <seq>gaattctaagttcaagaatccactattgcaacagcttgattccgaattgaatggtttattgtctgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaagtgttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51117" stop="52262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="51730" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="51962" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="465" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="51730"/>
          <exon e_start="51812" e_stop="51962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACT</genome_strand>
        <mrna_strand>GAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAAGTGTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322476" ref_strand="+" ref_description="SGN-E322476 [cTOB-26-E22]">
      <seq>tgcagcttcttctgaggaggattttagcggaaagtctggacaatccgtaaatctcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcaaaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaancaagttagccttggttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51180" stop="52599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51480" g_stop="51730" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="446" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52299" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="657" r_length="211" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E322476" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51480" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAA</genome_strand>
        <mrna_strand>TGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAAAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAANCAAGTTAGCCTTGGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324227" ref_strand="+" ref_description="SGN-E324227 [cTOC-4-G7]">
      <seq>ttttagcggaaagtctggacaatccgtaaatgtcaggtttcctggtggaaggattactctagttggtcttggctcatcagcatcatcacctacttcttatcacagtttaggacaggctgctgctgctgctgccaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51201" stop="52275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51501" g_stop="51730" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="51975" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="394" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51501" e_stop="51730"/>
          <exon e_start="51812" e_stop="51975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTC</genome_strand>
        <mrna_strand>TTTTAGCGGAAAGTCTGGACAATCCGTAAATGTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323511" ref_strand="+" ref_description="SGN-E323511 [cTOC-7-I14]">
      <seq>ttcttatcacagtttaggacaggctgctgctgctgctgcgcaagtcttctcaggctcgtaatattgccgttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51294" stop="52547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51594" g_stop="51730" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="333" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52247" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="492" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323511" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51594" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGC-CAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTAT</genome_strand>
        <mrna_strand>TTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCGCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320061" ref_strand="+" ref_description="SGN-E320061 [cTOB-21-O5]">
      <seq>ttgcacttgcttccaccgatggactctctgcagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagncaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacnattgaggttaacatactgatgctgagggtangctcacacttgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51362" stop="53043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51662" g_stop="51730" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="264" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="493" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="620" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52605" g_stop="52743" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="758" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E320061" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51662" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATG</genome_strand>
        <mrna_strand>TTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGNCAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACNATTGAGGTTAAC-ATACTGATGCTGAGGGTANGCTCACACTTGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327893" ref_strand="+" ref_description="SGN-E327893 [cTOC-22-A18]">
      <seq>cagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51392" stop="52941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51692" g_stop="51730" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="234" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="463" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="590" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52605" g_stop="52641" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="627" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51692" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCA</genome_strand>
        <mrna_strand>CAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324297" ref_strand="+" ref_description="SGN-E324297 [cTOC-4-F16]">
      <seq>cagaatcgaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaagtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51392" stop="52617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51692" g_stop="51730" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="234" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="463" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51692" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG</genome_strand>
        <mrna_strand>CAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAAGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328583" ref_strand="+" ref_description="SGN-E328583 [cTOC-23-H5]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttangtgcagcaaaagctcttggtgnaatangccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="582" r_length="126" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52605" g_stop="52645" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="623" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328583" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTANGTGCAGCAAAAGCTCTTGGTGNAA-TANGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327369" ref_strand="+" ref_description="SGN-E327369 [cTOC-19-E17]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttgggtgaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="583" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52605" g_stop="52645" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="624" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327369" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGGTGAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328141" ref_strand="+" ref_description="SGN-E328141 [cTOC-22-P16]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaagtgcagcaaaagctcttggtgaaattacgccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="583" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52605" g_stop="52645" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="624" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328141" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAAGTGCAGCAAAAGCTCTTGGTGAAATTACGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327756" ref_strand="+" ref_description="SGN-E327756 [cTOC-20-O4]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatatagaggagaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaattaggccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52504" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="572" r_length="116" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327756" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTC</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATATAGAGGAGAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTG-AATTAGGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326525" ref_strand="+" ref_description="SGN-E326525 [cTOC-17-G14]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52488" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="557" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTG</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325545" ref_strand="+" ref_description="SGN-E325545 [cTOC-15-A10]">
      <seq>gaagattaactctgcctctgccatagcaactggagttgtgctagggtcatttgaagataataggtttaggtccgagtcgaagaaatcaactttggaatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacnacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51399" stop="52762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51699" g_stop="51730" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51812" g_stop="52006" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="227" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="456" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52388" g_stop="52462" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="531" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51699" e_stop="51730"/>
          <exon e_start="51812" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTGGTATACACATATATATGTGTCCATTTTCTTGGTGAACCATATTGAGAAACAAAACTTGATTAGTTTTCTTGAATGTTATAGGAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGC</genome_strand>
        <mrna_strand>GAAGATTAACTCTGCCTCTGCCATAGCAACTG.................................................................................GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACNACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328096" ref_strand="+" ref_description="SGN-E328096 [cTOC-22-J9]">
      <seq>aatctttggatattcttggactgggaactggacctgaaatagagaggaaaatcaagtatgcagaacatgtatgtgcaggtgttatactcggtagagagctcgttaacgcaccagccaatatagttacgcctgcggtacttgctgaagaggctaaaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaaatggtaagacaattgaggttaacnatactgatgctgagggtaggctcacacttgctgatggcttgatatatgcctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51575" stop="53062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51875" g_stop="52006" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52089" g_stop="52317" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="361" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="488" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52605" g_stop="52762" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="647" r_length="159" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328096" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51875" e_stop="52006"/>
          <exon e_start="52089" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTGGTTAGTGATCTGTCTTTCAATGCATCTTCTCTTTTAATCATATCATATATTACTAAAATAACATATCGAGTTTGTGCTGCAGCGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAA-ATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAA</genome_strand>
        <mrna_strand>AATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG..................................................................................CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAAATGGTAAGACAATTGAGGTTAACNATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGGCTTGATATATGCCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326116" ref_strand="+" ref_description="SGN-E326116 [cTOC-16-D16]">
      <seq>aaaagattgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51810" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52110" g_stop="52317" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="335" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="509" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="570" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53152" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="705" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52110" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTA</genome_strand>
        <mrna_strand>AAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328518" ref_strand="+" ref_description="SGN-E328518 [cTOC-23-A24]">
      <seq>agattgcgtccacttatagcgatgtcatttctgttaactanttcgatgctgagcattgtaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51813" stop="53340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52113" g_stop="52317" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="332" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="506" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="567" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53040" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="590" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328518" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52113" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGAC</genome_strand>
        <mrna_strand>AGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACTANTTCGATGCTGAGCATTGTAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240581" ref_strand="+" ref_description="SGN-E240581 [cLED-21-M6]">
      <seq>ttgcgtcttcttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccatagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51816" stop="52964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52116" g_stop="52317" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="329" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52664" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="389" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E240581" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52116" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGA</genome_strand>
        <mrna_strand>TTGCGTCTTCTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCATAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235723" ref_strand="+" ref_description="SGN-E235723 [cLED-15-H6]">
      <seq>ttgcgtccacttatagcgatgtcatttctgttaacattttggatgctgagcagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51816" stop="52748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52116" g_stop="52317" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52448" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="263" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E235723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52116" e_stop="52317"/>
          <exon e_start="52388" e_stop="52448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATG</genome_strand>
        <mrna_strand>TTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315079" ref_strand="+" ref_description="SGN-E315079 [cTOB-4-M18]">
      <seq>cagtgcaaagaattgaaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51866" stop="53340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52166" g_stop="52317" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="279" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="453" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="514" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53040" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="537" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E315079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52166" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGAC</genome_strand>
        <mrna_strand>CAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295392" ref_strand="+" ref_description="SGN-E295392 [cLET-23-D15]">
      <seq>aaaatgggagcctacttagctgttgctgcagcagctactgaaaatcctccttacttcatccatttatgttttaaaactcctactaaggaacgcaaaacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51881" stop="53058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52181" g_stop="52317" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="264" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52758" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="418" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E295392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52181" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCT</genome_strand>
        <mrna_strand>AAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318772" ref_strand="+" ref_description="SGN-E318772 [cTOB-11-M13]">
      <seq>aacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaagttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51976" stop="53402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52276" g_stop="52317" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="169" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="404" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53102" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="489" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E318772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52276" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTAT</genome_strand>
        <mrna_strand>AACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAAGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328926" ref_strand="+" ref_description="SGN-E328926 [cTOC-24-P17]">
      <seq>aacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaacgccacggggtatggtgtttcactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52078" stop="53703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52306" g_stop="52317" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="139" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="313" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="562" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53305" g_stop="53403" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="659" r_length="97" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E328926" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52306" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTG</genome_strand>
        <mrna_strand>AACTTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAG-AAAACGCCACGGGGTATGGTGTTTC-ACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326359" ref_strand="+" ref_description="SGN-E326359 [cTOC-14-P12]">
      <seq>aacctttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaacgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcaaaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctancaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52076" stop="53455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52306" g_stop="52317" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52388" g_stop="52514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="139" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="313" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53018" g_stop="53155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="512" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326359" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52306" e_stop="52317"/>
          <exon e_start="52388" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTGACAGGTAAATAGATTTCTATCTTCTATTATTCTTACGTTATGATTTGCTGAACATTTGTTTTCGTGTTCCCTAGTGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</genome_strand>
        <mrna_strand>AACCTTTGACAG......................................................................TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAACGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAAAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTANCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232115" ref_strand="+" ref_description="SGN-E232115 [cLED-7-J14]">
      <seq>ggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgtgagagtatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52092" stop="53431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52392" g_stop="52514" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="297" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53131" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="472" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E232115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52392" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAAT</genome_strand>
        <mrna_strand>GGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGTGAGAGTATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300464" ref_strand="+" ref_description="SGN-E300464 [cLET-45-J15]">
      <seq>aaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctatcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52104" stop="53452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52404" g_stop="52514" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="285" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="346" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53152" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="481" r_length="135" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E300464" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52404" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTA</genome_strand>
        <mrna_strand>AAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTATCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232080" ref_strand="+" ref_description="SGN-E232080 [cLED-7-L7]">
      <seq>aaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggngcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggnccccgtatggagcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52179" stop="53667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52479" g_stop="52514" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="210" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="271" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="459" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53305" g_stop="53367" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E232080" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52479" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGG-CCCCGTATGGAGCGATGAA</genome_strand>
        <mrna_strand>AAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGNGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGNCCCCGTATGGAGCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376692" ref_strand="+" ref_description="SGN-E376692 [TUS-19-C12]">
      <seq>agctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52181" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52481" g_stop="52514" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="457" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53305" g_stop="53583" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="736" r_length="279" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E376692" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52481" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAAT</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231781" ref_strand="+" ref_description="SGN-E231781 [cLED-4-P20]">
      <seq>agctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52181" stop="53634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52481" g_stop="52514" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="457" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53305" g_stop="53334" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="487" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E231781" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52481" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCAT</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240192" ref_strand="+" ref_description="SGN-E240192 [cLED-25-O23]">
      <seq>agctcttggtgaaattaggccttccagagtagaggggcatttcattgtctcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgacgcaagtggtgaaaaactatggaggatgcctatggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52181" stop="53408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52481" g_stop="52514" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53108" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="360" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E240192" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52481" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGA</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GGGCATTTCATTGTCTCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGACGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237539" ref_strand="+" ref_description="SGN-E237539 [cLED-19-H5]">
      <seq>tcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52184" stop="53455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52484" g_stop="52514" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52605" g_stop="52778" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="205" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="266" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53018" g_stop="53155" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="404" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E237539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52484" e_stop="52514"/>
          <exon e_start="52605" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGTGAAATTAGGCCTTCCAGAGTAGAGGTGAGTCCTTCCTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</genome_strand>
        <mrna_strand>TCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323886" ref_strand="+" ref_description="SGN-E323886 [cTOC-5-P10]">
      <seq>gacattgtcttagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcangagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52365" stop="53507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52665" g_stop="52778" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="175" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="363" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53305" g_stop="53312" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="371" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323886" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52665" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGA</genome_strand>
        <mrna_strand>GACATTGTCTTAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCANGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291098" ref_strand="+" ref_description="SGN-E291098 [cLET-8-I10]">
      <seq>tcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52372" stop="53689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52672" g_stop="52778" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="168" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="356" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53305" g_stop="53389" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="441" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E291098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52672" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATG</genome_strand>
        <mrna_strand>TCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326458" ref_strand="+" ref_description="SGN-E326458 [cTOC-14-H20]">
      <seq>tcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaagaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52380" stop="53900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52680" g_stop="52778" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="160" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="348" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="649" r_length="301" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326458" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52680" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC</genome_strand>
        <mrna_strand>TCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAAGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325875" ref_strand="+" ref_description="SGN-E325875 [cTOC-12-P18]">
      <seq>gacaattgaggtgaacaatagtgatgctgagggtaggctcacactcgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52391" stop="53809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52691" g_stop="52778" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="149" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53305" g_stop="53509" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="542" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325875" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52691" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAAT</genome_strand>
        <mrna_strand>GACAATTGAGGTGAACAATAGTGATGCTGAGGGTAGGCTCACACTCGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238601" ref_strand="+" ref_description="SGN-E238601 [cLED-17-H22]">
      <seq>gtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52423" stop="53716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52723" g_stop="52778" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52866" g_stop="52926" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="117" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="305" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53305" g_stop="53416" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="417" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E238601" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52723" e_stop="52778"/>
          <exon e_start="52866" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGC</genome_strand>
        <mrna_strand>GTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541135" ref_strand="+" ref_description="SGN-E541135 [TUS-61-M8]">
      <seq>tgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtatatttgtttgtgactctattctttgtttggtacacgttgtacgtctactctgcttgaacttcattggatatctcgtatacgaatacaggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttagtttgagacgagaaacatgacatttggtcgttgtctttgcagtttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaatgcctaaataaaattgccactttaccttttcaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaactcgagaactagttctctcgagtttttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52571" stop="144021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52871" g_stop="53605" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53606" i_stop="54578" i_length="973">
            <donor d_prob="0.038" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54579" g_stop="54626" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="781" r_length="48" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E541135" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52871" e_stop="53605"/>
          <exon e_start="54579" e_stop="54626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAAT-AAATGCCTAAATAAAATTGCCACTTTACCTTTT-CAATGAAATTTATTATTCCCGTCTTAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAACTCGAGAACTAGTTCTCTCGAGTTTTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295151" ref_strand="+" ref_description="SGN-E295151 [cLET-20-B23]">
      <seq>gatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtatatttgtttgtgactctattctttgtttggtacacgttgtacgtctactctgcttgaacttcattggatatctcgtatacgaatacaggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttagtttgagacgagaaacatgacatttggtcgttgtctttgcagtttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52572" stop="53668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52872" g_stop="53368" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E295151" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52872" e_stop="53368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAA</genome_strand>
        <mrna_strand>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222706" ref_strand="+" ref_description="SGN-E222706 [cLEL-16-H10](-)">
      <seq>tatggttgctctggacctcagttgctgggcttttacacctaatatgacctagcaaggaggttgttaagctgctaggcaagtggtaaaacctatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgaaacattaccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52713" stop="53877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52898" g_stop="52926" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53305" g_stop="53580" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="485" r_length="276" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E222706" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52898" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGA</genome_strand>
        <mrna_strand>TATGGTTGCTC-TGGACC-TCAGTTGCTG...........................................................................................G-GCTTTTACACCTAAT-ATGACCTAGCAA-GGAGGTTGTT-AAGCTGCT-AGGCAAGTGGT-AAAACCTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGAAACATTACCTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219685" ref_strand="+" ref_description="SGN-E219685 [cLEL-24-C20](-)">
      <seq>gctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcnaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52605" stop="131267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52905" g_stop="52926" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="210" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="487" r_length="277" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54346" g_stop="54360" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="502" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E219685" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52905" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAA</genome_strand>
        <mrna_strand>GCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCNAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222553" ref_strand="+" ref_description="SGN-E222553 [cLEL-16-K21](-)">
      <seq>gctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttacctttcccaactgaaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52605" stop="131268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52905" g_stop="52926" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53018" g_stop="53205" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="210" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="512" r_length="302" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.82"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54346" g_stop="54356" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="523" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E222553" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52905" e_stop="52926"/>
          <exon e_start="53018" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTT-TGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATT</genome_strand>
        <mrna_strand>GCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTCCCAACTGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228859" ref_strand="+" ref_description="SGN-E228859 [cLEL-29-G1](-)">
      <seq>tgcttttacacctaatatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactggaagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52719" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53019" g_stop="53205" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53583" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="465" r_length="279" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228859" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53019" e_stop="53205"/>
          <exon e_start="53305" e_stop="53583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAAT</genome_strand>
        <mrna_strand>TGCTTTTACACCTAAT-ATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGAAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224117" ref_strand="+" ref_description="SGN-E224117 [cLEL-19-J12](-)">
      <seq>tagcaagggaggttgttgaagctgctgaggcaagtggtaaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52742" stop="131267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53042" g_stop="53205" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="441" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54360" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="456" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224117" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53042" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAA</genome_strand>
        <mrna_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTAAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229183" ref_strand="+" ref_description="SGN-E229183 [cLEL-29-L23](-)">
      <seq>cggcacgaggggtgtgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52744" stop="53854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53042" g_stop="53205" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53554" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="411" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E229183" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53042" e_stop="53205"/>
          <exon e_start="53305" e_stop="53554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>CGGCACGAG-GGGTG-TGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATG-TTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227649" ref_strand="+" ref_description="SGN-E227649 [cLEL-30-O13](-)">
      <seq>aggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcccccataaaattgccactttaccttttggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52751" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53051" g_stop="53205" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53576" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="427" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="445"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E227649" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53051" e_stop="53205"/>
          <exon e_start="53305" e_stop="53576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA</genome_strand>
        <mrna_strand>AGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCCCCATAAAATTGCCACTTTACCTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235029" ref_strand="+" ref_description="SGN-E235029 [cLEL-6-K5](-)">
      <seq>ggcaagtggtaacaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctaatatgattaacacggggcctggtaatgacggtgctataactggtgctctcttcctcaaacaattttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52770" stop="53854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53070" g_stop="53205" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53554" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="387" r_length="251" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E235029" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53070" e_stop="53205"/>
          <exon e_start="53305" e_stop="53554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAG-TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACT-AATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>GGCAAGTGGTAACAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTAATATGATTAACACGGGGCCTGGTAATGACGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAAATGATG-TTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222160" ref_strand="+" ref_description="SGN-E222160 [cLEL-16-B17](-)">
      <seq>caagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52772" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53072" g_stop="53205" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="411" r_length="277" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="432" r_length="21" r_score="0.619"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54367" i_stop="55590" i_length="1224">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.070" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55591" g_stop="55599" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="441" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E222160" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53072" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54366"/>
          <exon e_start="55591" e_stop="55599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAAATATTTTGGGGGGTTTTTTTAAAAAAAAAAAATTTTTTTTTTTTTTTTTCCCCTTTTTTTCCCCCCTTTAAAAAAAAAGGGGGTTGGGTTTTTTTTTTTCAACCAAAGGGTTTGGGGAACAAAAGAAATTTAGGGAATTTTTTTTTTTAAAAATTGGGAAAATCCATTAAGGATTTTATGGGGGATTATTTTTTTTCCCCTTTTTTTTTTGTGGAATCTTCTTTCCTTTTTCCAATAGGTTTTAAAAAGGAAAAAGTTTTTTAACTGGTCAAGAATTCTTATTTTATAAAAAAATATAGGAATATATAAATATATATATATATATATATAAAAGATGCCCTCTTTTTTTATTAGAATTATAATTTAAATTAGATATAAAAAGCAAGTTATCAATTTTTATATTGTAATCAGACATATTCTTATTCTTTTCATTCCACCACCTATAAAATACTTTCAACACTTAAATTCGAAATAGAATATCAATAACATATAATGGGATAGATGATGCACAAAATCTTAATATGAAATTTAAGTTATAATATTACTAACTAATATGGAGTGAATGAAAAAATTCAGTTTTTATATCAAAAGTAGTATCTAAATCTCAGTAGTGAAACAAAATAAAATCATTTAGTCAGTGAACAAGTTATATATCATTCTTATAATACGAAATTTAATAATGTCAGAGTTATTTAGTTGATATATCACTAGGCATCATAATTTTTGGAGTACAATAAATGAATCTTTTTAATACAAAATATTTTATACATCAAATTACTCTTTTTTTTTTGCCAAATAGAACTTAGATATTCATATAATTATAGAAAAAAACTAATTAACTTTTATGGTCAAACAAATTCTTGAATACTATAGAATTTTTTTTATACCCCTTTTTATGAGCTTTCACTTTTTTTTACTTTCATGATAACTGAAATTCACGATCGTTGAATTAGAAATAAGAA</genome_strand>
        <mrna_strand>CAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCCAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228955" ref_strand="+" ref_description="SGN-E228955 [cLEL-29-G1](-)">
      <seq>aagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52773" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53073" g_stop="53205" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53583" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="412" r_length="279" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228955" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53073" e_stop="53205"/>
          <exon e_start="53305" e_stop="53583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAAT</genome_strand>
        <mrna_strand>AAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225251" ref_strand="+" ref_description="SGN-E225251 [cLEL-17-E14](-)">
      <seq>agtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52774" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53074" g_stop="53205" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="409" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54363" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="427" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E225251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53074" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGA</genome_strand>
        <mrna_strand>AGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224235" ref_strand="+" ref_description="SGN-E224235 [cLEL-19-J12](-)">
      <seq>ggtgaaaaactatgaaggatgcctatggaggaaagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcgaatgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52777" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53077" g_stop="53205" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="406" r_length="277" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="421"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224235" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53077" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA</genome_strand>
        <mrna_strand>GGTGAAAAACTATGAAGGATGCCTATGGAGGAAAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228703" ref_strand="+" ref_description="SGN-E228703 [cLEL-29-L23](-)">
      <seq>gtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttcattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52778" stop="53854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53078" g_stop="53205" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53554" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="377" r_length="249" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228703" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53078" e_stop="53205"/>
          <exon e_start="53305" e_stop="53554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>GTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATG-TTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTCATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228446" ref_strand="+" ref_description="SGN-E228446 [cLED-3-K11]">
      <seq>aaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52781" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53081" g_stop="53205" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="426" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54588" i_length="983">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54589" g_stop="54638" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="476" r_length="50" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228446" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53081" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54589" e_stop="54638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAAA</genome_strand>
        <mrna_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226641" ref_strand="+" ref_description="SGN-E226641 [cLEL-26-A24](-)">
      <seq>aaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52781" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53081" g_stop="53205" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="402" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="421" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E226641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53081" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAA</genome_strand>
        <mrna_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215659" ref_strand="+" ref_description="SGN-E215659 [cLEL-15-M22](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52795" stop="131267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53095" g_stop="53205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="388" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54360" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="403" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53095" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAA</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215308" ref_strand="+" ref_description="SGN-E215308 [cLEL-20-I3](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52795" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53095" g_stop="53205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="412" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54357" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="424" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215308" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53095" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTG</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215404" ref_strand="+" ref_description="SGN-E215404 [cLEL-20-I3](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52795" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53095" g_stop="53205" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="412" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54357" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="424" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215404" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53095" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTG</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226285" ref_strand="+" ref_description="SGN-E226285 [cLEL-26-A24](-)">
      <seq>aggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgccaacaaggttcagtggttgcatctccatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatccaggtgcatgaattgaggctatagtataggcccccttgttcagttgagttataacatgcctaaataatgattgcctctttacctttttaagtgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52805" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53105" g_stop="53205" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="379" r_length="278" r_score="0.906"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="398" r_length="19" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E226285" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53105" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA-AATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAA</genome_strand>
        <mrna_strand>AGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGCCAACAAGGTTCAGTGGTTGCATCTCCATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCCAGGTGCATGAATTGAGGCTATAGTATAGGCCCCCTTGTTCAGTTGAGTTATAACATGCCTAAATAATGATTGCCTCTTTACCTTTTTAAGTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226782" ref_strand="+" ref_description="SGN-E226782 [cLEL-26-P16](-)">
      <seq>tgggagagtatgaaatcaggagtggctgattatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52816" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53116" g_stop="53205" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="392" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="413" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E226782" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53116" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAGTATGAAATCAGGAGTGGCTGA-TATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>TGGGAGAGTATGAAATCAGGAGTGGCTGATTATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220898" ref_strand="+" ref_description="SGN-E220898 [cLEL-22-A7](-)">
      <seq>tgggagagtataaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52816" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53116" g_stop="53205" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="391" r_length="301" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54359" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="405" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E220898" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53116" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAA</genome_strand>
        <mrna_strand>TGGGAGAGTATAAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215730" ref_strand="+" ref_description="SGN-E215730 [cLEL-15-N22](-)">
      <seq>agagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52820" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53120" g_stop="53205" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53576" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="358" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="373"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53120" e_stop="53205"/>
          <exon e_start="53305" e_stop="53576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA</genome_strand>
        <mrna_strand>AGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327576" ref_strand="-" ref_description="SGN-E327576 [cTOC-20-I10]">
      <seq>agtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttttagatgaataaaatgcctaaataaaattgcccctttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattccctctagtatcgtaacttggagatgaaagagatatatatttgttttactgcttgatgattttgttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52822" stop="140629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53122" g_stop="53205" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53691" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="471" r_length="387" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53692" i_stop="54523" i_length="832">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54524" g_stop="54572" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="520" r_length="49" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E327576" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53122" e_stop="53205"/>
          <exon e_start="53305" e_stop="53691"/>
          <exon e_start="54524" e_stop="54572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTTTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCCCTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227896" ref_strand="+" ref_description="SGN-E227896 [cLEL-39-C13](-)">
      <seq>gtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52823" stop="108779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53123" g_stop="53205" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="360" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54363" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="378" r_length="18" r_score="0.611"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E227896" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53123" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGA</genome_strand>
        <mrna_strand>GTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220021" ref_strand="+" ref_description="SGN-E220021 [cLEL-24-C20](-)">
      <seq>gtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52823" stop="131267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53123" g_stop="53205" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="360" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54360" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="375" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E220021" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53123" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAA</genome_strand>
        <mrna_strand>GTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219234" ref_strand="+" ref_description="SGN-E219234 [cLEL-11-J22](-)">
      <seq>tatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacaccacagggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattcaaaaatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52824" stop="53930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53124" g_stop="53205" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53630" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="409" r_length="327" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="427"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E219234" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53124" e_stop="53205"/>
          <exon e_start="53305" e_stop="53630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCAC-GGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCA</genome_strand>
        <mrna_strand>TATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACACCACAGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217977" ref_strand="+" ref_description="SGN-E217977 [cLEL-23-B24](-)">
      <seq>gaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgtcgagaaggttcagtggttgcatttcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccgcggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatggaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52827" stop="131268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53127" g_stop="53205" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="380" r_length="301" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.88"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54356" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="391" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E217977" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53127" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATT</genome_strand>
        <mrna_strand>GAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGTCGAGAAGGTTCAGTGGTTGCATTTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCGCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGGAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224690" ref_strand="+" ref_description="SGN-E224690 [cLEL-27-J8](-)">
      <seq>aaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52828" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53128" g_stop="53205" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="379" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="400" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224690" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53128" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229634" ref_strand="+" ref_description="SGN-E229634 [cLEL-4-K7](-)">
      <seq>aaatcaggagtggctgatatgattaacacggggcctggtaatggcggtactataactggtgctctcttcctcaaacaatttgttgacgaaaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcttcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52828" stop="131374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53128" g_stop="53205" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="355" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54360" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="370" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E229634" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53128" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAA</genome_strand>
        <mrna_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTACTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAAAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCTTCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215870" ref_strand="+" ref_description="SGN-E215870 [cLEL-15-N22](-)">
      <seq>atcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52830" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53130" g_stop="53205" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53576" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="348" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="363"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53130" e_stop="53205"/>
          <exon e_start="53305" e_stop="53576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA</genome_strand>
        <mrna_strand>ATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223881" ref_strand="+" ref_description="SGN-E223881 [cLEL-19-D11](-)">
      <seq>ctgatatgattaacttgggacctggtaatggcggtgctataagtggggctctcttcctcaaacaatttgttgacgaaaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccccttttaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52841" stop="131258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53141" g_stop="53205" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53562" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="323" r_length="258" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53563" i_stop="54523" i_length="961">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54524" g_stop="54563" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="363" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E223881" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53141" e_stop="53205"/>
          <exon e_start="53305" e_stop="53562"/>
          <exon e_start="54524" e_stop="54563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAAGTGGGGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAAAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216809" ref_strand="+" ref_description="SGN-E216809 [cLEL-1-C20](-)">
      <seq>tgatatgattaacacggggcctggtaatgacggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaataattgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52842" stop="108783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53142" g_stop="53205" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="366" r_length="302" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54357" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="378" r_length="12" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E216809" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53142" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGA-TGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTG</genome_strand>
        <mrna_strand>TGATATGATTAACACGGGGCCTGGTAATGACGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATAATTGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCATAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222469" ref_strand="+" ref_description="SGN-E222469 [cLEL-16-K21](-)">
      <seq>gatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcctgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52843" stop="131268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53143" g_stop="53205" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="364" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54356" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="375" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E222469" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53143" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATT</genome_strand>
        <mrna_strand>GATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCCTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222765" ref_strand="+" ref_description="SGN-E222765 [cLEL-16-B17](-)">
      <seq>ttaacttgggacctggtaatggcggtgctataaatggggctctcttccccaaacaatttgtttcgaagaaggttcagtggttgcatctcaacgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgcccctttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52850" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53150" g_stop="53205" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53581" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="333" r_length="277" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="354" r_length="21" r_score="0.619"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54367" i_stop="55590" i_length="1224">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.070" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55591" g_stop="55599" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="363" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E222765" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53150" e_stop="53205"/>
          <exon e_start="53305" e_stop="53581"/>
          <exon e_start="54346" e_stop="54366"/>
          <exon e_start="55591" e_stop="55599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAAATATTTTGGGGGGTTTTTTTAAAAAAAAAAAATTTTTTTTTTTTTTTTTCCCCTTTTTTTCCCCCCTTTAAAAAAAAAGGGGGTTGGGTTTTTTTTTTTCAACCAAAGGGTTTGGGGAACAAAAGAAATTTAGGGAATTTTTTTTTTTAAAAATTGGGAAAATCCATTAAGGATTTTATGGGGGATTATTTTTTTTCCCCTTTTTTTTTTGTGGAATCTTCTTTCCTTTTTCCAATAGGTTTTAAAAAGGAAAAAGTTTTTTAACTGGTCAAGAATTCTTATTTTATAAAAAAATATAGGAATATATAAATATATATATATATATATATAAAAGATGCCCTCTTTTTTTATTAGAATTATAATTTAAATTAGATATAAAAAGCAAGTTATCAATTTTTATATTGTAATCAGACATATTCTTATTCTTTTCATTCCACCACCTATAAAATACTTTCAACACTTAAATTCGAAATAGAATATCAATAACATATAATGGGATAGATGATGCACAAAATCTTAATATGAAATTTAAGTTATAATATTACTAACTAATATGGAGTGAATGAAAAAATTCAGTTTTTATATCAAAAGTAGTATCTAAATCTCAGTAGTGAAACAAAATAAAATCATTTAGTCAGTGAACAAGTTATATATCATTCTTATAATACGAAATTTAATAATGTCAGAGTTATTTAGTTGATATATCACTAGGCATCATAATTTTTGGAGTACAATAAATGAATCTTTTTAATACAAAATATTTTATACATCAAATTACTCTTTTTTTTTTGCCAAATAGAACTTAGATATTCATATAATTATAGAAAAAAACTAATTAACTTTTATGGTCAAACAAATTCTTGAATACTATAGAATTTTTTTTATACCCCTTTTTATGAGCTTTCACTTTTTTTTACTTTCATGATAACTGAAATTCACGATCGTTGAATTAGAAATAAGAA</genome_strand>
        <mrna_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAAATGGGGCTCTCTTCCCCAAACAA...................................................................................................TTTGTTTCGAAGAAGGTTCAGTGGTTGCATCTCAACGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCCAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224614" ref_strand="+" ref_description="SGN-E224614 [cLEL-27-J8](-)">
      <seq>cctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52861" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53161" g_stop="53205" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="346" r_length="301" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="367" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224614" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53161" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>CCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226880" ref_strand="+" ref_description="SGN-E226880 [cLEL-26-P16](-)">
      <seq>ctctcttcctcaaacaatttgttgacaagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52990" stop="108784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53189" g_stop="53205" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53605" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="318" r_length="301" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740">
            <donor d_prob="0.038" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="339" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E226880" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53189" e_stop="53205"/>
          <exon e_start="53305" e_stop="53605"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>CTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACAAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTAGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228622" ref_strand="+" ref_description="SGN-E228622 [cLEL-29-O7](-)">
      <seq>tctcttcctcaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttattttcagacgagaaacatgacatttggtctttgtttatgcagtttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggccataggataggccttcctggtatcctgattaataaaatgcctaaataaaattgccactttaccttttggagaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52890" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53190" g_stop="53582" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53583" i_stop="54345" i_length="763">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="413" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228622" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53190" e_stop="53582"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>TCTCTTCCTC-AACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCCATAGGATAGGCCTTCCTGGTATCCTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGGAGAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315451" ref_strand="-" ref_description="SGN-E315451 [cTOA-22-F11]">
      <seq>tcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttcccttttgaaatgaaatttattattcccgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgagctagtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52997" stop="140634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53195" g_stop="53205" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53305" g_stop="53594" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="301" r_length="290" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53595" i_stop="54523" i_length="929">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54524" g_stop="54586" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="364" r_length="63" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E315451" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53195" e_stop="53205"/>
          <exon e_start="53305" e_stop="53594"/>
          <exon e_start="54524" e_stop="54586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAGGTGTCTTCTACTTATCACGGGCAGCTACCCATAGTTACCTTTTAGGCGAGATGATAAATGTAAATATTTATTTACACAATCAGTATCAGTTTAAAGAAGTTAAACTCTTACATAAATATGTAGCAATAAGACTAATAAACATAAATTATACATCAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTCCCTTTTGAAATGAAATTTATTATTCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGAGCTAGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229294" ref_strand="+" ref_description="SGN-E229294 [cLEL-29-O7](-)">
      <seq>acatatctttattttcagacgagaaacatgacatttggtctttgtttatgcagtttgttgaccaaaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttccactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatccagttgtatgaataaaggccatagtataggccttcctgttatcttgattaataaaatgcctaaataaaattgccccttttccttttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="52952" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53252" g_stop="53582" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53583" i_stop="54345" i_length="763">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54346" g_stop="54366" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="352" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E229294" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53252" e_stop="53582"/>
          <exon e_start="54346" e_stop="54366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTTAAATTCTTCAAAATTTTTGTCATACTTAAGTTGACTTTTTAAAAAATATACTCCCTCCGTCGTATTTTATGTGGCACTTTTCGTTTTTTGAGAGTTAAATAGTTTAATTTTGACCGTACATTTGTGTATGGAATCTTTAAATTTTTTGAAATGAAATTTATATATTTGTAAACTACGTAAAGAGTACTATAAGTCACAATAATTGATAATTCAAAATGTTAAAAGGATCTATGAAAAATTACGGTAAAAAATAGACTTGTTTGAATCTGAAAATGCAACAAGTGTCGCATAGAATGGAATGGAAGGAATACTTTTTTTCTAAGGATTTGACACACATCTCTTGATATTTTTATACAATTCGGTTGAGATAAGAATAAAAATAGTAAAACCACCCAACCAACTATATGATCAGTGTTTGTGAGTTTGATACAATGAAAGTCATTTTTCAAGGATAAGATTGGATCTCTTACTTTTTTTTAAGTCCATTTATGAAACAATGCTTCTTTCTTTTTGGCTCATCTTTAACTTTTAACTTTTTACATGACATGTTTAAAATCACAAGAATAATATTATGATACATTTAACGTATTTTTAGTTTAATACCACAAAATTTAAGTCTTTTTTACAAACGTTGTATCAATTTAAAACAGACAAACAAATTGAAACGAAAG</genome_strand>
        <mrna_strand>ACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACCAAAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCCACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCCAGTTGTATGAATAAAGGCCATAGTATAGGCCTTCCTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTTCCTTTTGTAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234222" ref_strand="+" ref_description="SGN-E234222 [cLEL-8-L87](-)">
      <seq>aaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgtaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaagtgccactttaccttttccaatgaaagaagagagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="53017" stop="53882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53317" g_stop="53581" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E234222" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53317" e_stop="53581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA</genome_strand>
        <mrna_strand>AAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGTAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAAGTGCCACTTTACCTTTTCCAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225374" ref_strand="+" ref_description="SGN-E225374 [cLEL-17-E14](-)">
      <seq>ctggccccgtatggatcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="53045" stop="53873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53345" g_stop="53573" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E225374" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53345" e_stop="53573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTT</genome_strand>
        <mrna_strand>CTGGCCCCGTATGGATCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725221" ref_strand="+" ref_description="SGN-E725221 [FC26BG09]">
      <seq>gggcgattggcggccaatcggccgaattgatcccctggttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagactttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="59622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55980" g_stop="56165" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="215" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="338" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="395" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="470" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59322" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="754" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E725221" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55980" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAG</genome_strand>
        <mrna_strand>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACTTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714289" ref_strand="+" ref_description="SGN-E714289 [FB11AB05]">
      <seq>cctggttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55684" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55984" g_stop="56165" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="305" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="437" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="726" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="736"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E714289" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55984" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>CCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343845" ref_strand="+" ref_description="SGN-E343845 [cTOF-12-M12]">
      <seq>ctggttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctangttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatncgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagttttctgtttggcataaggcaatgaaactggatttgatagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55685" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55985" g_stop="56165" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="304" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="729" r_length="293" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E343845" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55985" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTA-GTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTAT-CGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAG-TTTCTGTTTGGCATAAGGCAATG-AACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>CTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTANGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATNCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTTCTGTTTGGCATAAGGCAATGAAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306483" ref_strand="+" ref_description="SGN-E306483 [cLEX-13-A12]">
      <seq>ctggttcttcacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55685" stop="59498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55985" g_stop="56165" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="304" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59198" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="596" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E306483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55985" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCT</genome_strand>
        <mrna_strand>CTGGTTCTTCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699217" ref_strand="+" ref_description="SGN-E699217 [FA09AE12]">
      <seq>cggttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55687" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55986" g_stop="56165" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="303" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="360" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="435" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="724" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E699217" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55986" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>CGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711342" ref_strand="+" ref_description="SGN-E711342 [FB01DA06]">
      <seq>cgttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttacttgaaaaaaaaaaaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55688" stop="86064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55987" g_stop="56165" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="302" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="359" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="434" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59381" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="777" r_length="343" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E711342" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55987" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTG</genome_strand>
        <mrna_strand>CGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAAAAAAAAAAAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732184" ref_strand="+" ref_description="SGN-E732184 [LB01CA05]">
      <seq>cgttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55688" stop="140937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55987" g_stop="56165" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="302" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="359" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="434" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59365" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="761" r_length="327" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E732184" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55987" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTAT</genome_strand>
        <mrna_strand>CGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747158" ref_strand="+" ref_description="SGN-E747158 [GI|12407792]">
      <seq>ttctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcacttttttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55689" stop="140939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55989" g_stop="56165" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="357" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="432" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59366" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="760" r_length="328" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E747158" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55989" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATC</genome_strand>
        <mrna_strand>TTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294077" ref_strand="+" ref_description="SGN-E294077 [cLET-13-O23]">
      <seq>ttctccacagcaaacacagagaagttcatagcacaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggagcctcaaaaacttaccctcaccaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttgtgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccatgttaaaggtggatttgaggaacgaaaggatctcgttctgtctgtgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55689" stop="59389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55989" g_stop="56165" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="357" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="432" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59089" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="483" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E294077" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55989" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCT</genome_strand>
        <mrna_strand>TTCTCCACAGCAAACACAGAGAAGTTCATAGCACAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGAGCCTCAAAAACTTACCCTCACCAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAT...........................................................................................GTTAAAGGTGGATTTGAGGAACGAAAGGATCTCGTTCTGTCTGTGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228370" ref_strand="+" ref_description="SGN-E228370 [cLED-3-H11]">
      <seq>tctccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcgtggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaagagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcacctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttccgaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgcgatgtctgcagtgggtgaagagcagatctgtgctgtgaaggacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55690" stop="59429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55990" g_stop="56165" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="356" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="431" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="522" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228370" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55990" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</genome_strand>
        <mrna_strand>TCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCGTGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAGAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCACCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCGACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGCGATGTCTGCAGTGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337729" ref_strand="+" ref_description="SGN-E337729 [cTOE-17-L6]">
      <seq>tccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttntatatcttgttatcgnggtacctttgcaatctgttttatcgtgaaaacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55692" stop="59543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55992" g_stop="56165" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="297" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="354" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="429" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59243" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="634" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E337729" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55992" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCT</genome_strand>
        <mrna_strand>TCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTNTATATCTTGTTATCGNGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549743" ref_strand="+" ref_description="SGN-E549743 [TUS-6-L12]">
      <seq>ccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgncatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcacttttttttttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55693" stop="59657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="56165" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="296" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="353" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59357" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="748" r_length="320" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E549743" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCAC-TTTTTTTTTACTTG</genome_strand>
        <mrna_strand>CCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGNCATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549744" ref_strand="+" ref_description="SGN-E549744 [TUS-6-M12]">
      <seq>ccacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55693" stop="59637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="56165" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="296" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="353" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59337" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="727" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E549744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACA</genome_strand>
        <mrna_strand>CCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325883" ref_strand="+" ref_description="SGN-E325883 [cTOC-12-C23]">
      <seq>gcacagcaatcacagagaagttcatagcagaagaagagagggatttatctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55993" g_stop="56165" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="296" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="353" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59166" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="556" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E325883" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55993" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAA</genome_strand>
        <mrna_strand>GCACAGCAATCACAGAGAAGTTCATAGCAGAAGAAGAGAGGGATTTATCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347866" ref_strand="+" ref_description="SGN-E347866 [cTOF-31-I13]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactcttatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcacttttttttttacttgaatagtatccagaatgtgttgattgatactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59396" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="787" r_length="360" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E347866" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCAC-TTTTTTTTTACTTGAATAGTATCCAG-ATGTGTTGATTGATACTAGTAATTCTG</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTTATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTTACTTGAATAGTATCCAGAATGTGTTGATTGATACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373797" ref_strand="+" ref_description="SGN-E373797 [TUS-31-M4]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagaacgtttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttatcttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59382" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="772" r_length="345" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E373797" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTA-CTTGAATAGTATCCAGATGTGTTGATTGA</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGAACGTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTATCTTGAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346343" ref_strand="+" ref_description="SGN-E346343 [cTOF-23-P24]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="86054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59338" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="727" r_length="300" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E346343" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACAT</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293332" ref_strand="+" ref_description="SGN-E293332 [cLET-18-E15]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59259" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="648" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E293332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATG</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276704" ref_strand="+" ref_description="SGN-E276704 [cLEN-14-D19]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59250" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="639" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="649"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E276704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCT</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292233" ref_strand="+" ref_description="SGN-E292233 [cLET-1-F22]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59199" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="588" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E292233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTT</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340134" ref_strand="+" ref_description="SGN-E340134 [cTOF-2-C9]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59182" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="571" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E340134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCG</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319841" ref_strand="+" ref_description="SGN-E319841 [cTOB-12-J16]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59181" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="570" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E319841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGC</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295104" ref_strand="+" ref_description="SGN-E295104 [cLET-20-A22]">
      <seq>cacagcaaacactttagaagtttttagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatgggtttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcggtctgtctgtgatgtctggaatgggtgaaaagcatatctgtgctgtgaaggacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55708" stop="59430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="296" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="353" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="428" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59130" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="520" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E295104" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACAC-AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGG</genome_strand>
        <mrna_strand>CACAGCAAACACTTTAGAAGTTTTTAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGGTCTGTCTGTGATGTCTGGAATGGGTGAAAAGCATATCTGTGCTGTGAAGGACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274812" ref_strand="+" ref_description="SGN-E274812 [cLEN-13-D19]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="518" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E274812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243281" ref_strand="+" ref_description="SGN-E243281 [cLEF-12-L17]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58941" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="421" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E243281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301337" ref_strand="+" ref_description="SGN-E301337 [cLEW-24-C2]">
      <seq>cacagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58937" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="417" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E301337" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCT</genome_strand>
        <mrna_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310437" ref_strand="+" ref_description="SGN-E310437 [cTOA-10-M12]">
      <seq>cacagcaaacacagataagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcgaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattggtccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="58577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55994" g_stop="56165" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58277" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="345" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E310437" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55994" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGA</genome_strand>
        <mrna_strand>CACAGCAAACACAGATAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCGAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGGTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324860" ref_strand="+" ref_description="SGN-E324860 [cTOC-11-B19]">
      <seq>acagcaaacacagagaagttcatagcagaagaagagagagatttatctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55695" stop="59523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55995" g_stop="56165" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="294" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="351" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="426" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59223" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="611" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E324860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55995" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCT</genome_strand>
        <mrna_strand>ACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTATCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313997" ref_strand="+" ref_description="SGN-E313997 [cTOA-19-F2]">
      <seq>acagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55695" stop="59482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55995" g_stop="56165" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="294" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="351" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="426" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59182" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="570" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E313997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55995" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCG</genome_strand>
        <mrna_strand>ACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339225" ref_strand="+" ref_description="SGN-E339225 [cTOF-4-A20]">
      <seq>agcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatncgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagttttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55697" stop="131374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55997" g_stop="56165" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="292" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="349" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59339" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="727" r_length="303" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E339225" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55997" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTAT-CGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAG-TTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATG</genome_strand>
        <mrna_strand>AGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATNCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343040" ref_strand="+" ref_description="SGN-E343040 [cTOF-11-C16]">
      <seq>agcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccatgttaaaggtggatttgaggaacgaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttatagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgcctggcataaggcaatgaactgcatttgatagcagaagtaatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55697" stop="59636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55997" g_stop="56165" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="292" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="349" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59336" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="722" r_length="298" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E343040" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55997" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTAC</genome_strand>
        <mrna_strand>AGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAT...........................................................................................GTTAAAGGTGGATTTGAGGAACGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTATAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGCCTGGCATAAGGCAATGAACTGCATTTGATAGCAGAAGTAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732410" ref_strand="+" ref_description="SGN-E732410 [LB02AD07]">
      <seq>agcttacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcgaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55697" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55997" g_stop="56165" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="292" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="349" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="713" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E732410" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55997" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>AGCTTACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCGAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281263" ref_strand="+" ref_description="SGN-E281263 [cLEL-1-O23](-)">
      <seq>cttgcaaggtctgcctttgataactatataaccattcttgcgaatagtaccagcttgttgagggtaagtttttgaggcaccagcatcagctttaggctcaaaatggtgttcttcatcacacatagctaaatctctctcttcttctacaatgaacttctctgtgtttgctcgtgccgaattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="56465" stop="55689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56165" g_stop="55997" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E281263" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56165" e_stop="55997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAGGTCTGCCTTTGATAACTATATAACCATTCTTGCGAATAGTACCAGCTTGTTGAGGGTAAGTTTTTGAGGCACCAGCATCAGCTTTGGACTCAAAATGGTGTTCTTCATCAGACATAGCTAAATCTCTCTCTTCTTCTGCTATGAACTTCTCTGTGTTTGCT</genome_strand>
        <mrna_strand>CTTGCAAGGTCTGCCTTTGATAACTATATAACCATTCTTGCGAATAGTACCAGCTTGTTGAGGGTAAGTTTTTGAGGCACCAGCATCAGCTTTAGGCTCAAAATGGTGTTCTTCATCACACATAGCTAAATCTCTCTCTTCTTCTACAATGAACTTCTCTGTGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357783" ref_strand="+" ref_description="SGN-E357783 [cTOS-24-C11]">
      <seq>gcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgntatcgtggtacctttgcaatctgttttatcgtgaaaacacttatatctattggcatggcttgaatagttgaaactcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55698" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55998" g_stop="56165" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="291" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="667" r_length="244" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59284" i_stop="60602" i_length="1319">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="60603" g_stop="60621" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="686" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E357783" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55998" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
          <exon e_start="60603" e_stop="60621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCGCCACCCTCTTCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCACCACCCTCTCCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATTGAGTACTCATACCTTTTATGTATTAGTTCCATGAATGACGATGATTTGCTAGTAGCTAGGGTATGAATGATCTTAAAGTATAATCGATCGTAAAATTGATCGGAGTAATTTTTGGATAATGCAGTAGTAAATTTGGATCATATTATATCCATATAAAGCAAAATGCTCCAATTATTTGCGTGTATAATAATAACATAATTTTCTTAACATTAAATTAATGAACATCAAACACTTGGTACGAAGTTTTCTTCAAGTTAGATCTTAATTGACCTTACTATACCACCAAGTTGTGTTGCGTGATGAACGAGATTTCTTCATCCCTAATTAAAAGTCTCGAGAATATAAGCTTGAATAGAGCACTAGATCAAAGAAACTATAGCTACTTGTGATATACTAATGTAAGTTATCTATTAAACAAGATCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCCCGGCAACAGAAATTTTTTTCTTTTTGTCTTACATGACATAATCTTTCAGTATTTACTTATGCACACTTAAAAGTAAAAAAACGATAACTTAATTTATCGAGATTAGGAACATAATTTGCTAACCAAACACCCCTGATTAGGCATATTTTATATACAAGTGATTTATGATTATGTAGATAATAATTGTCCTAGATAAAGAGTATTCAATAACTAAGACAAGACAATTGAATTAACTACTTGAACAAAACTGGACAGATATTAGGTACTGGTTTATGTTTGTCTATTAATATTAATAAAATACAAAATAGATGGCCTTAAAATATTAGGTATTAGACTTGCAAATTATAGCTAAGAGACAAAAAAATAATAATTAA</genome_strand>
        <mrna_strand>GCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGNTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACA-CTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCCTAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353343" ref_strand="+" ref_description="SGN-E353343 [cTOS-15-A10]">
      <seq>gcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55698" stop="59476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55998" g_stop="56165" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="291" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59176" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="561" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E353343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55998" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTT</genome_strand>
        <mrna_strand>GCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732696" ref_strand="+" ref_description="SGN-E732696 [LB02DE09]">
      <seq>caaatacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtcttttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55699" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="347" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59371" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="755" r_length="333" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E732696" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGAT</genome_strand>
        <mrna_strand>CAAATACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTTTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725160" ref_strand="+" ref_description="SGN-E725160 [FC26BA09]">
      <seq>tcggccgaattgctcctatcccctgcctttaagggcaaacacagagaagttcatagcagaagaagacctagatattagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55672" stop="140937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="203" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="326" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="383" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="458" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59365" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="785" r_length="327" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E725160" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGAT-TTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTAT</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGACCTAGATATTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717810" ref_strand="+" ref_description="SGN-E717810 [FC02DC04]">
      <seq>gcggccaatcggccgaattgatcccctggttctcccagcatacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcatatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttaccgaagacgttttatatcttgttatcggggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="59651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="205" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="328" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="385" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59351" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="773" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E717810" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTT</genome_strand>
        <mrna_strand>CATACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCATATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTACCGAAGACGTTTTATATCTTGTTATCGGGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719788" ref_strand="+" ref_description="SGN-E719788 [FC08DE07]">
      <seq>gggcgattggcggccaatcggccgaattgatcccctggttctcccagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="59651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="214" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="337" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="394" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="469" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59351" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="782" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E719788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTT</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732229" ref_strand="+" ref_description="SGN-E732229 [LB01CE02]">
      <seq>cccttcataggcagagaagttcatagcagaagaagagagagatctatctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="172" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="352" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="427" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59301" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="690" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="701"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E732229" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAG</genome_strand>
        <mrna_strand>CATAGGCAGAGAAGTTCATAGCAGAAGAAGAGAGAGATCTATCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335256" ref_strand="+" ref_description="SGN-E335256 [cTOE-1-C14]">
      <seq>gaggagccaaacaccagagaagttcattagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgccctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55697" stop="59597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="177" r_length="170" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="300" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="357" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="432" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59297" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="691" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E335256" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACA-CAGAGAAGTTCA-TAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTG-CCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCA</genome_strand>
        <mrna_strand>CAAACACCAGAGAAGTTCATTAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725300" ref_strand="+" ref_description="SGN-E725300 [FC26CG09]">
      <seq>gggcgattggcggccaatcggccgaattgatcccctggttctcccagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55680" stop="59597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="214" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="337" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="394" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="469" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59297" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="728" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E725300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCA</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301574" ref_strand="+" ref_description="SGN-E301574 [cLEW-23-N1]">
      <seq>gaattcggcacgagggagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55702" stop="59576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="174" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="297" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="354" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="429" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59276" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="667" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E301574" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAAC</genome_strand>
        <mrna_strand>C-ACGAGGGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321074" ref_strand="+" ref_description="SGN-E321074 [cTOB-13-E9]">
      <seq>caaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55699" stop="59497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="347" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59197" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="581" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E321074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295319" ref_strand="+" ref_description="SGN-E295319 [cLET-20-H20]">
      <seq>caaacacagagaagtttatagtttaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctggttgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55699" stop="59480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="347" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59180" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="564" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E295319" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAG</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTTATAGTTTAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGGTTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550972" ref_strand="+" ref_description="SGN-E550972 [TUS-54-J2]">
      <seq>caaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55699" stop="59464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="291" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59164" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="549" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E550972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTC-AAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688716" ref_strand="+" ref_description="SGN-E688716 [t3_tus_54_J02]">
      <seq>caaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55699" stop="59464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="291" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="348" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59164" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="549" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E688716" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTC-AAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281292" ref_strand="-" ref_description="SGN-E281292 [cLEL-1-O10](-)">
      <seq>gcacgagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccatttcccccccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaagaaggaaaggatctcggtctgtctgtgatgtctgcaatgggtgaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="59405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="174" r_length="167" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="297" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="354" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="429" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59105" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="496" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281292" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGC</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTCCCCCCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAAGAAGGAAAGGATCTCGGTCTGTCTGTGATGTCTGCAATGGGTGAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209668" ref_strand="+" ref_description="SGN-E209668 [cLEC-54-F22]">
      <seq>tcgtgccgatttcggcacgaggttctccacagcaaacacagagaagttcatagcagaagaacagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55682" stop="59405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="199" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="320" r_length="121" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="377" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="452" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59105" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="520" r_length="68" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E209668" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGG-AAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGC</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAACAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGC--AATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202860" ref_strand="+" ref_description="SGN-E202860 [cLEB-1-O20]">
      <seq>gcacgagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtaagttttcttttacctagtatatgaagtgtataagtcatcctcttactggggaaaaacttattggatacagtgctacgtagttctattgatgacttattgcatcgttttgatgtctctagtagtttcttcatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="58723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="174" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="297" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58423" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="493" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E202860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAAT</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281596" ref_strand="-" ref_description="SGN-E281596 [cLEL-1-P10](-)">
      <seq>gcacgagcaaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttcctttatcccacaattgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="58444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="174" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="297" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281596" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281596" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTTATCCCACAATTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281586" ref_strand="-" ref_description="SGN-E281586 [cLEL-1-N14](-)">
      <seq>gcacgagcaaacacagagaagttcatagcagaagaagagagagatttagctatgggtgatgaagaacaccattttgagccccaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55694" stop="58426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55999" g_stop="56165" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="174" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58126" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="280" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281586" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281586" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55999" e_stop="56165"/>
          <exon e_start="58021" e_stop="58126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTT</genome_strand>
        <mrna_strand>CAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGGGTGATGAAGAACACCATTTTGAGCCCCAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312913" ref_strand="+" ref_description="SGN-E312913 [cTOA-8-J10]">
      <seq>aaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgnggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59280" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="663" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E312913" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTA</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGNGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335788" ref_strand="+" ref_description="SGN-E335788 [cTOE-6-G7]">
      <seq>aaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59197" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="580" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E335788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255865" ref_strand="+" ref_description="SGN-E255865 [cLEG-35-D11]">
      <seq>aaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="290" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="347" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59134" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="518" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E255865" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTC-AAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACC</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299092" ref_strand="+" ref_description="SGN-E299092 [cLET-42-C18]">
      <seq>aaacacagagaagttcatagcataagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaagggtggatttgaagaaggaaaaggatctcgttctgtctgtgatgtctgcaatgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="421" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59099" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="484" r_length="63" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E299092" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAA-GGTGGATTTGAGGAAGG-AAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTG</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCATAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGGTGGATTTGAAGAAGGAAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288772" ref_strand="+" ref_description="SGN-E288772 [cLES-17-K5]">
      <seq>aaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58941" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="415" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E288772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288689" ref_strand="+" ref_description="SGN-E288689 [cLES-8-C8]">
      <seq>aaacacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatggaaatcggactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55700" stop="59209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56000" g_stop="56165" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="289" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="346" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58909" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="383" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E288689" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56000" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACG</genome_strand>
        <mrna_strand>AAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGGAAATCGGACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296566" ref_strand="+" ref_description="SGN-E296566 [cLET-39-A13]">
      <seq>acacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaagagttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55702" stop="59505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56002" g_stop="56165" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="288" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="420" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59205" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="587" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E296566" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56002" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG-GTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATC</genome_strand>
        <mrna_strand>ACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315076" ref_strand="+" ref_description="SGN-E315076 [cTOB-4-M12]">
      <seq>acacagagaagttcatagcagaagaaaagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaagcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55702" stop="59478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56002" g_stop="56165" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="287" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="344" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="419" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="559" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E315076" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56002" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</genome_strand>
        <mrna_strand>ACACAGAGAAGTTCATAGCAGAAGAAAAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAAGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336431" ref_strand="+" ref_description="SGN-E336431 [cTOE-4-O3]">
      <seq>acacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55702" stop="59429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56002" g_stop="56165" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="287" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="344" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="419" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="510" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E336431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56002" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</genome_strand>
        <mrna_strand>ACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540564" ref_strand="+" ref_description="SGN-E540564 [TUS-60-O13](-)">
      <seq>cacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcattttttttactgaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55703" stop="131270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56003" g_stop="56165" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="286" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="343" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="418" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59388" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="766" r_length="348" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E540564" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56003" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAG</genome_strand>
        <mrna_strand>CACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCA--TTTTTTTTACTGAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548406" ref_strand="+" ref_description="SGN-E548406 [TUS-60-O13]">
      <seq>cacagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcacttttttttacttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55703" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56003" g_stop="56165" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="286" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="343" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="418" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59363" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="742" r_length="324" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E548406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56003" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGT</genome_strand>
        <mrna_strand>CACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCAC-TTTTTTTTACTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276012" ref_strand="+" ref_description="SGN-E276012 [cLEN-12-E11]">
      <seq>acagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgcggtacctttgcaatctgttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55704" stop="59531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56004" g_stop="56165" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="285" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="342" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="417" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59231" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="610" r_length="193" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E276012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56004" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATC</genome_strand>
        <mrna_strand>ACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGCGGTACCTTTGCAATCTGTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338288" ref_strand="+" ref_description="SGN-E338288 [cTOE-13-B23]">
      <seq>acagagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55704" stop="58445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56004" g_stop="56165" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="285" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58235" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="293" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E338288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56004" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACA</genome_strand>
        <mrna_strand>ACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302311" ref_strand="+" ref_description="SGN-E302311 [cLEW-19-H8]">
      <seq>agagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55706" stop="59600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56006" g_stop="56165" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="283" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="415" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59301" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="678" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E302311" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56006" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAG</genome_strand>
        <mrna_strand>AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278626" ref_strand="+" ref_description="SGN-E278626 [cLER-10-L6]">
      <seq>agagaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55706" stop="59252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56006" g_stop="56165" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="283" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="415" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59055" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="432" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E278626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56006" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGA</genome_strand>
        <mrna_strand>AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243374" ref_strand="+" ref_description="SGN-E243374 [cLEF-16-J16]">
      <seq>agagaagttcatagcataagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagctatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcattccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55706" stop="59213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56006" g_stop="56165" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="283" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="340" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58913" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="381" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E243374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56006" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCT</genome_strand>
        <mrna_strand>AGAGAAGTTCATAGCATAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGCTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATTCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711604" ref_strand="+" ref_description="SGN-E711604 [FB02BH02]">
      <seq>cggtaatcatagcagaagaagagagagatttagctatgtctcatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55714" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56008" g_stop="56165" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="281" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="338" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="413" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="702" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E711604" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56008" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>CGGTAATCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTCATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278963" ref_strand="+" ref_description="SGN-E278963 [cLER-2-F15]">
      <seq>agaagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55708" stop="59403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56008" g_stop="56165" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="281" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="338" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="413" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59103" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="478" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E278963" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56008" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGA</genome_strand>
        <mrna_strand>AGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205158" ref_strand="+" ref_description="SGN-E205158 [cLEC-16-D13]">
      <seq>gaagttcatagcagaagaagagagagatttaggtatgtgtgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55709" stop="59389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56009" g_stop="56165" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="280" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="337" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="412" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59089" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="463" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E205158" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56009" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCT</genome_strand>
        <mrna_strand>GAAGTTCATAGCAGAAGAAGAGAGAGATTTAGGTATGTGTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312616" ref_strand="+" ref_description="SGN-E312616 [cLEZ-20-J13]">
      <seq>aagttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55710" stop="59484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56010" g_stop="56165" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="279" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="336" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="411" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59184" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="557" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E312616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56010" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAA</genome_strand>
        <mrna_strand>AAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717322" ref_strand="+" ref_description="SGN-E717322 [FB19DE01]">
      <seq>agttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaaaannaaaaaaaaaaaaaaaaaaannccctcggggggggggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55711" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56011" g_stop="56165" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="278" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="410" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59301" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="671" r_length="261" r_score="0.924"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59302" i_stop="59563" i_length="262">
            <donor d_prob="0.972" d_score="0.60"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59564" g_stop="59582" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="690" r_length="19" r_score="0.421"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E717322" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56011" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59301"/>
          <exon e_start="59564" e_stop="59582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGG</genome_strand>
        <mrna_strand>AGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAAAANNAA-A-AAAAAAAAAAAAAAAAN......................................................................................................................................................................................................................................................................NCCCTCGGGGGGGGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340469" ref_strand="+" ref_description="SGN-E340469 [cTOF-1-M16]">
      <seq>ttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttntatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55713" stop="59581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56013" g_stop="56165" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="276" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="333" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="408" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59281" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="651" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E340469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56013" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAA</genome_strand>
        <mrna_strand>TTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTNTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290508" ref_strand="+" ref_description="SGN-E290508 [cLES-20-K19]">
      <seq>ttcatagcagaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55713" stop="59464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56013" g_stop="56165" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="276" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="333" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="408" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59164" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="534" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E290508" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56013" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</genome_strand>
        <mrna_strand>TTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294248" ref_strand="+" ref_description="SGN-E294248 [cLET-14-G12]">
      <seq>ttcatagcataagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55713" stop="59416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56013" g_stop="56165" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="276" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="333" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="408" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59116" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="486" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E294248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56013" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCT</genome_strand>
        <mrna_strand>TTCATAGCATAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279067" ref_strand="-" ref_description="SGN-E279067 [cLEL-4-A20](-)">
      <seq>tcggcacgaggagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggnttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55720" stop="59241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56019" g_stop="56165" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="269" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="327" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58941" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="396" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E279067" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56019" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGG-TTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</genome_strand>
        <mrna_strand>TCGGCACGAG-GAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGNTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305510" ref_strand="+" ref_description="SGN-E305510 [cLEX-15-L22]">
      <seq>agaagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55721" stop="59497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56021" g_stop="56165" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="268" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="400" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59197" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="559" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E305510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56021" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</genome_strand>
        <mrna_strand>AGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309215" ref_strand="+" ref_description="SGN-E309215 [cLEZ-12-K11]">
      <seq>aagaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatgggtttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaagacattggtaccaagacctagttgtgtgcattctgcagcataaataattgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55723" stop="59478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56023" g_stop="56165" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="266" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="323" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="398" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="538" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E309215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56023" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</genome_strand>
        <mrna_strand>AAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAAGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347639" ref_strand="+" ref_description="SGN-E347639 [cTOF-26-P1]">
      <seq>agaagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtaagttttcttttacctagtatatgaagtgtataagtcatcctcttactggggaaaaacttattggatacagtgctacgtagttctattgatgacttattgcatcgttttgatgtctctagtagtttcttcatgaaattgagatttgaataatgatgaagttgtcttacctttcttttgtgagagaattcctacggngattcttttctcaatgagtcctgtcggctctttccaaggttccattgaggntcagtcccctctgggctggtcctttttgagttcgatgatgcaactgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55724" stop="58884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56024" g_stop="56165" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="265" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58584" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="621" r_length="356" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E347639" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56024" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACA</genome_strand>
        <mrna_strand>AGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGNGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTT-CCAAGGTTCCATTGAGGNTCAGTCCCCTCTGGGCTGGTCCTTTTTGAGTTCGATGATGCAACTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718713" ref_strand="+" ref_description="SGN-E718713 [FC05CB10]">
      <seq>aagagagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaatagtttctgtttggcataaggcaatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55726" stop="59611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56026" g_stop="56165" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="263" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="320" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="395" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59311" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="669" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E718713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56026" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCT-AATAGTTTCTGTTTGGCATAAGGCAATGAACT</genome_strand>
        <mrna_strand>AAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAATAGTTTCTGTTTGGCATAAGGCAATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283389" ref_strand="+" ref_description="SGN-E283389 [cLER-12-G20]">
      <seq>aagagagagatttagctatgtctgatgaagaacaccattttgagtcaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagactttccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaagaaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55726" stop="59369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56026" g_stop="56165" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="262" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="319" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="394" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59069" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="425" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E283389" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56026" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATC</genome_strand>
        <mrna_strand>AAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGT-CAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTTCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAAGAAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723877" ref_strand="+" ref_description="SGN-E723877 [FC22BC03]">
      <seq>agagagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcaaatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaaaacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaagtaatctacatgtcacttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55729" stop="59652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56029" g_stop="56165" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="260" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="317" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="392" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59352" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="707" r_length="315" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E723877" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56029" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGC-AGAAGTAATCTACATGTCACTTTTTTTTT</genome_strand>
        <mrna_strand>AGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAAATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAAACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAAAGTAATCTACATGTCACTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337475" ref_strand="+" ref_description="SGN-E337475 [cTOE-11-F15]">
      <seq>agagatttagctatgtctgatgaagaacaccattttgactccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatgttgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcaggtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55731" stop="58564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56031" g_stop="56165" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="258" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58264" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="295" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E337475" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56031" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTG</genome_strand>
        <mrna_strand>AGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGACTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATGTTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304510" ref_strand="+" ref_description="SGN-E304510 [cLEX-11-I11]">
      <seq>gagatttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaagacattggtaccaagacctagttgtgtgcattctgcagcataaataattgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55732" stop="59478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56032" g_stop="56165" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="257" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="314" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="389" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="529" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E304510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56032" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</genome_strand>
        <mrna_strand>GAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAAGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286891" ref_strand="+" ref_description="SGN-E286891 [cLES-14-J22]">
      <seq>tttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgnggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaatagttctgtttggcataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55736" stop="59600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56036" g_stop="56165" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="253" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="385" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59301" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="648" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E286891" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56036" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAG</genome_strand>
        <mrna_strand>TTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGNGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAATAGTTCTGTTTGGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555510" ref_strand="+" ref_description="SGN-E555510 [cTSC-4-J19]">
      <seq>ttagctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55737" stop="59624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56037" g_stop="56165" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="252" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="384" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59324" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="670" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E555510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56037" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCA</genome_strand>
        <mrna_strand>TTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717221" ref_strand="+" ref_description="SGN-E717221 [FB19BH10]">
      <seq>gctatgtctgatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55740" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56040" g_stop="56165" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="249" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="306" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="381" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="670" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E717221" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56040" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>GCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373796" ref_strand="+" ref_description="SGN-E373796 [TUS-31-M4](-)">
      <seq>atgtttgataaaaaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaattgtactgactatcagctgattgacatatttgaaaatggttttgtgtctttttttactgaaaatggaaacaccaaaaacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatttcgttctgtttgtgatgtttgcaatgggtgaaaagcagatttgtgctgtgaaggacattggtaccaagacctagttgtgtgcattttgcagcataaataattgctttttaacgaaaacgttttatattttgttattgtggtacctttgcaatttgttttatcgtgaaaacaccttatatttattggcatggcttgaatagttgaaactttaatagtttttgtttggcataaggcaatgaactggatttgatagcagaagtaatttacatgtcactttttttttacttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55743" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56043" g_stop="56165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="246" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="378" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59374" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="714" r_length="336" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E373796" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56043" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTG</genome_strand>
        <mrna_strand>ATGTTTGATAAAAAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATTGTACTGACTATCAGCTGATTGACATATTTGAAAATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTTTTTTTACTGAAAATGGAAACACCAAAAACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATTTCGTTCTGTTTGTGATGTTTGCAATGGGTGAAAAGCAGATTTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTTTGCAGCATAAATAATTGCTTTTTAACGAAAACGTTTTATATTTTGTTATTGTGGTACCTTTGCAATTTGTTTTATCGTGAAAACACCTTATATTTATTGGCATGGCTTGAATAGTTGAAACTTTAATAGTTTTTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATTTACATGTCACTTTTTTTTTACTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298048" ref_strand="+" ref_description="SGN-E298048 [cLEW-12-G2]">
      <seq>tctgatgaagaacaccattttgagtccaaagctgatgctggtgcgactaaaacaaaccctccacaagctggttctattcgcaagaatggttatatagttatcaaaggcagacctataaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtaactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagactacctcagacttcccaccgatgacaccctgtggaaccaggttaaaagtggatttgaggaacgaaaggatctccttctgcctgtgatatctgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55746" stop="59252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56046" g_stop="56165" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="243" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="375" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59096" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="433" r_length="58" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E298048" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56046" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGG</genome_strand>
        <mrna_strand>TCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCGACTAAAACAAACCCTCCACAAGCTGGTTCTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTATAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTAACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACTACCTCAGACTTCCCACCGATGACACCCTGTGGAACCAG...........................................................................................GTTAAAAGTGGATTTGAGGAACGAAAGGATCTCCTTCTGCCTGTGATATCTGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252196" ref_strand="+" ref_description="SGN-E252196 [cLEG-8-B18]">
      <seq>ggatgaagaacaccattttgagtccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggttctatacgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctctgacttcccaccgatgacaccctgttgaaccaagttaaaggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55749" stop="59252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56048" g_stop="56165" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="241" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="298" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="373" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59049" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="384" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E252196" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56048" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGG</genome_strand>
        <mrna_strand>GGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTTCTATACGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCTGACTTCCCACCGATGACACCCTGTTGAACCAA...........................................................................................GTTAAAGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354059" ref_strand="+" ref_description="SGN-E354059 [cTOS-16-I24]">
      <seq>tccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccagctctcgactatttgtaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaagcaaatgactggatttgatagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55770" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56070" g_stop="56165" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="219" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59021" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59022" g_stop="59327" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="657" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E354059" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56070" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59022" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG..........................................................................CTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAAGCAAATGACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350914" ref_strand="+" ref_description="SGN-E350914 [cTOS-7-J17]">
      <seq>tccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccagctctcgactatttgtaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55770" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56070" g_stop="56165" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="219" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59021" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59022" g_stop="59327" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="657" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E350914" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56070" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59022" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG..........................................................................CTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357803" ref_strand="+" ref_description="SGN-E357803 [cTOS-24-M19]">
      <seq>tccaaagctgatgctggtgcctcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccagctctcgactatttgtaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55770" stop="59631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56070" g_stop="56165" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="219" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="351" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59021" i_length="74">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59022" g_stop="59327" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="657" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E357803" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56070" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59022" e_stop="59327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA</genome_strand>
        <mrna_strand>TCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG..........................................................................CTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277949" ref_strand="+" ref_description="SGN-E277949 [cLER-4-O11]">
      <seq>tcaaaaacttaccctcaacaagctggtactattcgcaagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgnggnacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55791" stop="59568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56091" g_stop="56165" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="198" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="255" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="330" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59277" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="569" r_length="239" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E277949" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56091" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACT</genome_strand>
        <mrna_strand>TCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGNGGNACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718814" ref_strand="+" ref_description="SGN-E718814 [FC05DF03]">
      <seq>accctcaacaagctggtactattcgcaagaatggttatatacttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaaaatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaaaatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcaaacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaaaagcaaatctgtgctgtgaaggacattggtaccaagacctaattgtgtgcattctgcagcataaataattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55801" stop="59477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56101" g_stop="56165" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="188" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="320" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59177" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="459" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E718814" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56101" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTT</genome_strand>
        <mrna_strand>ACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATACTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAAATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAAATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAAACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAAAGCAAATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAATTGTGTGCATTCTGCAGCATAAATAATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291452" ref_strand="+" ref_description="SGN-E291452 [cLET-2-K4]">
      <seq>agctggtactattcgcaagaatgggtatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcgatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55811" stop="58569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56111" g_stop="56165" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="178" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58269" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="220" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E291452" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56111" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATA</genome_strand>
        <mrna_strand>AGCTGGTACTATTCGCAAGAATGGGTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCGATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288249" ref_strand="+" ref_description="SGN-E288249 [cLES-16-K13]">
      <seq>aagaatggttatatagttatcaaaggcagaccttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55827" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56127" g_stop="56165" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="162" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="219" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="294" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="539" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E288249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56127" e_stop="56165"/>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAGGTTTTTAATTTAGACCCTTTTGTTTTTTTTCAATTGAATCTGCTTTAACAAGTTCAGATTTTGTGTTTAATCTATGTTTTGATTCATGGGGTTGTGTTATTTTTGCTTTATTTGAATGAATCTTGTATAAAAATCAGATCTTGATGTGTTTTTACCCTTTAATGGTTTTGCTGTTATCTAAATCCTTGTTGTTGGTTGAGTTTGTTTCCTTTTGCTGTTTGTTTTCATGGATCTTGAAGTGTTATGTAGTTGTAGTTGGAGAGATGAAGGTGTGGTTTGGTGGTCAACGAAGTAGGCTGAGAATCATGAGGTCTTTAAGTTCGAATATCGACAGAGGCAAAAATATTGAGAATCATTAAGTCCTTAGGTTTCAATGTCAGCGGATGCAAAAATATGGTTAATGAACTAGGTTGAGAATCATGAAGTGTTAGGTTTAAATATTGGGGCAAATATATGGTCAAAGAACTAGGTTGAGAATCATGAGGTCGTAGATTCAAATTTTGGAGGTGGCAAAAATATAGAAAATAAGTAGGTTGAGAATCATGAAATCTTAGGTTTCAATATCGGCAGACGCAAAAATATGGTCAATTAACTTGAACTAGGCTGAGAATCATGAGGTCTTAAGTTCACATAGCGGTGGAGGCATGTTGTTTTCTGTTTGGATATCCCCAAACTTTTGGTTTTGGTTGGTACCTTCTTGGTAATTTAGTCAATAAACCTTAATCTTATCCAAAAAAATAAGAATAACGGCAGAGACAAAAATTGTTAGTGATTCTTTCCTTAGTGGCCCTACTCATGTGGAATTACACTGAGTCTGTTGTTGAGTCGAATAAATTTCATTCATATCGCTCCAAGTTGGTCAAAAAAATACTTAACGTGTAGCTAGCTTAACCAAAATCAACTACCAAACTACCCGAATGATTCTCTTTACATCAAAAGAAGGATAGGTTGTGTTTGAGCTGTGACTCTTAACCCCTAATTTGTTTGATTTTTATGTGAATATATGTAGCTTAGATAGTAAGCTTCTCCAGGATTTTGTTTTACTATTTCTGAAGATTATGATTCTTGTATTTTTCTTGCATTAGCTATAGTTGATACGAGTTAAAAGCTTGAACCTTTTCAAAGTCTTTTGAGGAAAAAGGGTACTTACATTATCCCAATAGCATTATAGGAGATGTCTGGCAAAATTTTAGTGAGTAGGATCAGTTTGGTGTATGCATCAATAGTCATTGATTGAATATGTCCTGAGGTTCTCGTTATAAGTTAAATGTTTATTTTTCTTTATAACCTCATCTCTCTAACTAATAGAGAAGGAAGAAAGAGGGGGGTATCAACTAATGAAAACATTTTTTAATCAATGACTTTTGATGCATAAACATCATTGATTTTTGAGTAAATCGATGTGAAGCGTGTCATTAGAAGGGAAACCTGAAGTTACTGGTATTGTTGCATAAGCTAACAGTATGATAGACTGTTAAGTCTTTTCTTCTAATGGGAATTTCATTGTTCCTTCTTTCTAACTCCGTGTTCTAAAACTTAATAATGAGAATACTATATTCAGATTTCACCCCGAAAAGTAGTTTACCACTTTTGTATTCTTTAATCTGATTAATTGAAAGGAGACGGGTGATATCTTCTTGTTAAAGGGTTTTCTGTCAAGAAAACAGACATCAAGGTTCAATAGCATTGTTGTTTCAGCTCAAAATATTGAGTCATTGCATAATCTTCAACCTTCTTTTTGCGGATAGGTATATTCAATTTTTTTGGTTTTCTCTTCCCTTCTGGCTCTTTGAAGAGGTTTTCTAGTTTTGTCCATGGAAGCAATTGTTCTTAATGTGATGGAAATCTTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA</genome_strand>
        <mrna_strand>AAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292588" ref_strand="+" ref_description="SGN-E292588 [cLET-16-F16]">
      <seq>ttgcaaggttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacggtttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57713" stop="59650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58013" g_stop="58143" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="187" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="262" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59350" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="574" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E292588" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58013" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTT</genome_strand>
        <mrna_strand>TTGCA-AGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGGTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712026" ref_strand="+" ref_description="SGN-E712026 [FB03CG02]">
      <seq>gttgttgaggtctccacttccaaaactggcaagcatggacatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnccggggggggggggccccccccccttcccccccctagggggggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57721" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="180" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="255" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59359" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="576" r_length="321" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59360" i_stop="64858" i_length="5499">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.387" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64859" g_stop="64942" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="660" r_length="84" r_score="0.536"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64943" i_stop="66404" i_length="1462">
            <donor d_prob="0.790" d_score="0.48"/>
            <acceptor a_prob="0.555" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66405" g_stop="66434" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="690" r_length="30" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E712026" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59359"/>
          <exon e_start="64859" e_stop="64942"/>
          <exon e_start="66405" e_stop="66434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCGCCACCCTCTTCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCACCACCCTCTCCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATTGAGTACTCATACCTTTTATGTATTAGTTCCATGAATGACGATGATTTGCTAGTAGCTAGGGTATGAATGATCTTAAAGTATAATCGATCGTAAAATTGATCGGAGTAATTTTTGGATAATGCAGTAGTAAATTTGGATCATATTATATCCATATAAAGCAAAATGCTCCAATTATTTGCGTGTATAATAATAACATAATTTTCTTAACATTAAATTAATGAACATCAAACACTTGGTACGAAGTTTTCTTCAAGTTAGATCTTAATTGACCTTACTATACCACCAAGTTGTGTTGCGTGATGAACGAGATTTCTTCATCCCTAATTAAAAGTCTCGAGAATATAAGCTTGAATAGAGCACTAGATCAAAGAAACTATAGCTACTTGTGATATACTAATGTAAGTTATCTATTAAACAAGATCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCCCGGCAACAGAAATTTTTTTCTTTTTGTCTTACATGACATAATCTTTCAGTATTTACTTATGCACACTTAAAAGTAAAAAAACGATAACTTAATTTATCGAGATTAGGAACATAATTTGCTAACCAAACACCCCTGATTAGGCATATTTTATATACAAGTGATTTATGATTATGTAGATAATAATTGTCCTAGATAAAGAGTATTCAATAACTAAGACAAGACAATTGAATTAACTACTTGAACAAAACTGGACAGATATTAGGTACTGGTTTATGTTTGTCTATTAATATTAATAAAATACAAAATAGATGGCCTTAAAATATTAGGTATTAGACTTGCAAATTATAGCTAAGAGACAAAAAAATAATAATTAATACTAACTCAATTGCTAAGCATTTTATAAAGGGAAACTATGATATCGATCTCTTAAAATCATTTGTTTTCAGAGATCACTAGTTTGAAATCTATCGCAGAAAAAAACCTAGTGTAATATGATAAGAATACAACACATGATGTATGAATTAGACACGTGTTACTGATGGAAAGTCCGCATGATGTGCACGTTAAGCACACGTCCCAAAATCTCTCGTCCAATAATAATTGTCCACTATTGACTTGACACATAAATTAAGAAACTGTAAAGGACATGGGTAATTTTACTAAAGCACCCTTATTAAATAATGAAAAATGAATACTATTTTAATAGAAAAGATAAATAAGACACAAAATGGCAAATTATTTATTGTCTTTATACGCTGAACAACAATATTGGACATCCTAAAATAGCGTGGTGGATAAGTAAAGATGAACGGAGAGCTGGTGAAGAAGAACTGTCAATGAGGTTTATTTTCGTTTTTAGCAATCGTGGTGTCTAAACCAACTTACACACATCTCAATTAATTTCACGAATACCCATTACCTTTTTCCGACACATATTTCGGTTAACTCTACTCATTGAGGCTTGGACAGATGGAGAAAAATAATATTTTATTTTATAATAAGAAATATCAATGAGATTTAAATAAAAGTTGTGCATCTTTAAAAATAGGGCCCTTAACAGTTGGTACACTTGCCTTGGAAATTGGAAACATATTTCACAATCCATCCCCATTTGTTATAAAGATAGTTCTCAGTTGTCAATCTACTTTGAGCTGTCAAGCACAGTTTTTGAGACATTAACAGATAACATAAGTCCCTACAAGTAGATGTATGACCTAATTCCAGGTACAATAACTAATAGATCGTGTTGCTCGGACTTTTCAAAATGATATCATATCTGTGTCGGATTTTCCAAAAACAAACACTATTTTTGGATGATCCAATCCGATATGCACCTTCCTTTTTGAGGACAGTGAGTCCACCCTTTTATGCTTCTCCGCTTAGAATACTAATAGCCTTTTATGACGTGCGTTTAACCACACATCATAAGTTTTTGTATTCTTAAACTAGGCCAAAGCTGTGGGGAAAGATGGTTGCTATGTAACTAAAATGCACAACTTTTGACTTGAAAAAAAACTTCATTCATTTATAGACATGAACAGAAGTTACTCCTAGTTAATCTTGATCTAGTAATCTAAAAATCTCAAGAATTCTATGATATGCATAGATATTGACTCATTTTCTCTGTACACAACCAGTTTTTGCAGCTAATCTATGTGAATTTAACCAGTTGTTACAAGTCTTTATATCACCTGAATAACACAAAGATGAAAATCACTCTGAGGAGAAACTCAAGTCATCGATTGATCTACATATCTCTGTTTCGTTTGCTTTGTTGGCTTGTGCTGATTCAGTTTCATCGTTGTTCGAGTCCTTCTCTTTACCTTCAGCAGATTCAACACAGTCAGGAAATCTAAAGCAACTAATAAGATGGTCATTTGTAATACCAGCAACCTGCATGAAAGAGTAGACCACAGTAGGTCCCACGCCCCGGAAACCTCTCCTAATTAGGTCTTTGCTAATCAGATCTGCTTTTGCTGTCTTCACCGGAACTTGACGAGGATATCTAAATCCACTTACTATAGGCTTGTGGTTCACAAAGCTCCAGATATACTTGTCAAATGATCCAAATTCATCTATAACCTGACATAAAACAGCATAAAATTAATTATTTAAGCTTGTGTTTCACAAAACCTGTCACTAGGCCACAAACCGGCTATGTTATTCAGAACCTCAAAAAATGTTGTTGAGTCGGTGTCTGATCCACAAAAAATCAGACATACACAGTGATTTTTGAAGAGTCCAAGCAAAATAGCACAGTCATTAAGAAGAGTTCCATTTCAAAAAGAACGTCTCTTTCCGTTTTTGGGAGCTCTTTGATTTCAACTTTTCACAAGGCATTTTAAGACCGCAATTTAAAGGATATTTGGGTTCATTCAACCTATTTTTAGTTAAAGACCACAAGATTCAATAGTCTTCTTTACTTTCTTAAAGTCCGTGCCAAATCAAAGCCAGACAAACAAATTGAAACGGAAGAAGTACTAGGTATAACCAGCTGGCATTACTTTCTAGTTTGAAATATTAAGGTAAGCCTGCCTCAAGTGAACTTGCCAGTTGTCGGTACAGATCAAACAAACTGACTTATCACCAGGACCACTATTAACTTACTTCTCTACCTAATCCAATAACTGATTGAATATCCTACATTTAAATAAGAAGAATCGAGAGTGGTCCACGGAAGAGACTCCCGATAAAATCATACTATTACTTCAGAAATTCGACAATCAGAATGATTTTTTCATTTAATTAGCCAGTAAATTGCCTATAAGTTGGAACACATGTAAGTGTTTATCCTAAATAGTTGATGTTAGCTATTGGACCACCCTATACATATTAGTAAACGCAAACAAGTTGAATCAAGGTGGAAGTGACCACTATTTCTAGCTGGATAAGAGAGCAATACCTTCAACATTTGACGAGCATTTTCAATGATGCCACGCAGTTTAAGTTCTGATAATAGTGAGCATGCCGTACCTCCAGGAGCTAAAGTCTTCTTTTCATTCAACTTGGCCACTACTATGGGATCAAAATCTGCGAATACTTCTCTGCATCACAATTTTTTTAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGAGGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGAGTAAACACTTCAGCTTTGAATATGCACATCTAGACATTTCAACTTGTCTCCGCATGTCAGTTGAACACTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGCTTCCTGCAAGATTCAATAAGAATTAGAATCTATATATTGTGTGAGAATTCTCTGGACAAGAATCTGGCAACTTACTTGTCGTCATGGACTGGAACTCCCCATTCTTCATCGTGGAAATTAGCATAAGATGGATCTGGTTAAAAGGAGAAACAATATAAGAAACTACAAGCTCAAAATTGTATAGGTCGTACTATATATATATATATAGCTTAACAAGGATTTTAATCGTCAGTATATACTCTCAAAATTATTTAAAGTTTTCTGCAGCTTTCAAATTCAGTCTGACATTTCCTATAGCCAACAGTACTGGAAGTAGAAGATAATAAGGTCTTGCTATAGCCAATTCATATACTGTGCAGCCAAAGGATTTCAAAAATACATAAACAGAAACTCGAACTTGGCCTCAGCTGGCAAGTAAGCACCCCAACTTTGAGAGTACACACATCTCAACTTGATGTCAATTGGTGATCAAACACTCTAGCTCATCCTCACAGTTTCTTTGGACACCCAACATTGAAGTTACACATAAATTTTGGAGGTGTCTCGATGATCATATTTTGCAAGTTGGACTGTTCAACTGACCCAGTCGAAATGAATTGAGGTGTCTAGACATGCATACTCAAAGTTGGAACATTAGTTGCTAGTTAAGGCCAAGTATAGTGTCTATCTATGTATTATGCATTTACTTATTCAATAGTCAGGGCACTTATACATAAAAATTGTTCCAATTTCCACAATTTTCATCTTGAAACATCTCTAAAAGAATCACCCCCTTCATGGTCACCTCCAAAAATGATGGTAAAGAAGAACAGGAAATATCAGCTAACAGGCTGCAATTAACCTTCTAATTTAGAACATTTCTCGATTAAATTTCAACAATAATTGCTTTGGACGGTGTAATATCAGAAGCAACAAACAATCAAAATCCAAATATAGTAAATTTTGAAAAAAAGAACTACCAAGAACACACCTGTATTAGGTGTCACCCAGGCACATCTTTTCTTTGATTGTGAACCATCAATTGAAGAGTCTGATATATCATCTGAAACTATCCTTTTGGACTTCGACGCCAACTGCTTCCTTCTGCTTGAGGTACTATTCATTCTATATATCCTACCAGTTGAAGCACTGCTGTGATATGAATCCGTCGAGGCATCAGAAGAACATGAAGCACTAAGTGAAAAGTTGGAATACAATGACTCTTGTCGCCTAAGTATCGAAGGAACATCAAAAGGAAGCAATGAAGGGGATGGCTGGTGACCATTTTTATCATCCATCTCAAGCTCCTCTTTTGACTTCACTATCTTTCTCGTAGGTTTCGAAATAGATTTTCTTGAACCAGGTGATCTCTGTGCCTTATTCCCAGCTAGTCCAAGAACTGGCCTTGCTTCTGAATCAGCTACATTCATTGACCTTACTCTTGAAGCTCCTGACATTGAACAAAACTCCCCTCTGCTTCTGTCTCCTAATTCAATTTTAGGCCTCCGAATCCTCAAAATTCCATACGTCTACCGCCTGCTGCAGTGACCCAAAATTTCAAAATTACTAATCTGAAGAGCCTCTCAAGATCTTACAAAACCACACATTGCTAGTACCCAGCAAAAACTCCACAAATCATACCTAACAATGCTTATGATTCCTATCTAATACCAAAACTGGGGATCTTAGTAGCTCAGTTGATTGGTTTGCTACCTGAAATTTCACCTTATTGGTGAGGGTTCGACTCCACATCTTGTAATCCCCACCCCCATTTCCCCCTTTTCGCAAAAAAAGACTATCTAAACCTCAATATCACTCTGTATAGTGTACAACCTTTCAACCCCAGAAGCACAAAACTTGCATTAGCTAAATCATCCTTCACAAATCCAAGAAATTACAACAAACCCTTCAACTTAGATGCTACAAATGACATGTATTCATTCAATCTTGACACTCAAATTGCAAAAATCTCAATAAAGATTCAACCTTTACATACAAACACTCAAACCCCACAACTTATTTCCTCTCAAAACTCAATCTTTAAAACAAACATAACTTAAAACTCACAAAAACAACCTCTTACTTCAAATGAAATGCAAATCTCAGCATAAAGTTTCAACCTTTTCAATAAACCACTCAAACCCCACAATTTTATTTCCCCTAAAAATCCTCCACCAACACCCCATCAAAGCTAAATCTCAACATCAACACATCCAAGAACTACAAAATGCATTTAAAAAAATAATCTTATCTGTCTTTGACTATACATAAACTTCCAACACACACATTTTTTTCAATAAATAAAAGATTTTACTTTACTACTTGCAAATATTTTTTTAAAAAATGTAGAGACAGCTGTTATTATTATTGAAAATAAAGAATGAACCTTGATAGATACAGATTCCATTGAGCTTTTTTTTTTTTCTTTTTTCTATCTTTTAGAAAGTATGAAACTGAGACTTTGTCTTTTCAGAACTTCATTATTCTTTGAAGGAAACAAAAG</genome_strand>
        <mrna_strand>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTNNNAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNCCGGGGGGGGGGGGCCCCCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTTCCCCCCCCTAGGGGGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292589" ref_strand="+" ref_description="SGN-E292589 [cLET-16-F18]">
      <seq>ccccgggctgcaggcttgcaaggatgctgttgtctccacttccaaaactggcaagcatgggcatgcaaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcacatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgatttatcgtgaaaacaccttatatctattggcatggcttgaataggtgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttatcaaatagctgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57701" stop="59667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58021" g_stop="58143" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="145" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="202" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="277" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59370" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="608" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E292589" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58021" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGA</genome_strand>
        <mrna_strand>GATGCTGTTGTCTCCACTTCCAAAACTGGCAAGCATGGGCATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCACATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGATTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGGTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTA-TCAAATAGCTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290963" ref_strand="+" ref_description="SGN-E290963 [cLET-8-K4]">
      <seq>caaaatgtcactttgtggcaatcgacattttcaatgcaaaaaagcttgaagatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaataatctacatgtcactttttttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57764" stop="140936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58064" g_stop="58143" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="137" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="212" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59364" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="538" r_length="326" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E290963" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58064" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTA</genome_strand>
        <mrna_strand>CAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAAATAATCTACATGTCACTTTTTTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281457" ref_strand="-" ref_description="SGN-E281457 [cLEL-1-O23]">
      <seq>agatattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaggcaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57813" stop="108777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58113" g_stop="58143" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="88" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="163" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59296" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="421" r_length="258" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281457" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58113" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGC</genome_strand>
        <mrna_strand>AGATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAGGCACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229074" ref_strand="+" ref_description="SGN-E229074 [cLEL-29-J16](-)">
      <seq>atattgttccttcatcccacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttacttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57815" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58115" g_stop="58143" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="86" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="161" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59362" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="485" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E229074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58115" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGTTCCTTCATCCCACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAG</genome_strand>
        <mrna_strand>ATATTGTTCCTTCATCCCACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286278" ref_strand="+" ref_description="SGN-E286278 [cLES-11-F8]">
      <seq>cacaattgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttacttgnnnaaaaaaaannnnnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57920" stop="59657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58132" g_stop="58143" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="69" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="144" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59361" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="467" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="490"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E286278" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58132" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATA</genome_strand>
        <mrna_strand>CACAATTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232377" ref_strand="+" ref_description="SGN-E232377 [cLEL-5-H20](-)">
      <seq>ttgtgatgtgccacatgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttacttgaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57920" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58137" g_stop="58143" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58228" g_stop="58284" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="64" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="139" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59039" g_stop="59367" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="468" r_length="329" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E232377" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58137" e_stop="58143"/>
          <exon e_start="58228" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATGTAAGACAAGATTCTCTCCTTCGTTTGTTCAGTTTTCCGACAATCAAAGTTTGACTTTGTCTGATTTTTAAATGCTTTCTGCAGGTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCC</genome_strand>
        <mrna_strand>TTGTGAT....................................................................................GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAAAAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232453" ref_strand="+" ref_description="SGN-E232453 [cLEL-5-H20](-)">
      <seq>catgtcaatcgtactgactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactatttttttacttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57934" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58234" g_stop="58284" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="126" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59362" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="450" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E232453" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58234" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAG</genome_strand>
        <mrna_strand>CATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTATTTTTTTACTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349758" ref_strand="+" ref_description="SGN-E349758 [cTOS-3-I16]">
      <seq>gactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57949" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58249" g_stop="58284" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="111" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="356" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E349758" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58249" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA</genome_strand>
        <mrna_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350781" ref_strand="+" ref_description="SGN-E350781 [cTOS-7-F16]">
      <seq>gactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57949" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58249" g_stop="58284" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="111" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="356" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E350781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58249" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA</genome_strand>
        <mrna_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354830" ref_strand="+" ref_description="SGN-E354830 [cTOS-19-F11]">
      <seq>gactatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57949" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58249" g_stop="58284" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="111" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="356" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E354830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58249" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA</genome_strand>
        <mrna_strand>GACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357447" ref_strand="+" ref_description="SGN-E357447 [cTOS-23-E23]">
      <seq>actatcagctgattgacatatctgaagatggttttgtgtctcttcttactgaatttggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57950" stop="59583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58250" g_stop="58284" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="110" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="355" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E357447" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58250" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA</genome_strand>
        <mrna_strand>ACTATCAGCTGATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAATTTGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228786" ref_strand="+" ref_description="SGN-E228786 [cLEL-29-J16](-)">
      <seq>attgacatatctgaagatggttttgtgtctcttcttactgaaaatggaaacaccaaagcgacctcagacttccccccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttattttaacttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="57961" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58261" g_stop="58284" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="98" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59362" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="422" r_length="324" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228786" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58261" e_stop="58284"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACATATATCTATAAAGTAGAAAATTTCTCCCACTTTAATTGTTTTCTTTTCCCCTTCCAAGAATGTGCGAAGTGGATAATGTGGCCGATGGGGTGTAACTGTGAACACTGATTTTTGTTTTCCACTTAAGGTGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAG</genome_strand>
        <mrna_strand>ATTGACATATCTGAAGATGGTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACACCAAAG-CGACCTCAGACTTCCCCCCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTATTTTAACTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232449" ref_strand="+" ref_description="SGN-E232449 [cLEL-5-H8](-)">
      <seq>tgtgtctcttcttactgaaaatggaaactccacagtcgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactaatattttacttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58573" stop="59661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58713" g_stop="58713" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58714" i_stop="58872" i_length="159">
            <donor d_prob="0.582" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="76" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59039" g_stop="59361" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="399" r_length="323" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E232449" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58713" e_stop="58713"/>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAACAGTCCTTCTATTTCCAAAATTTAATACTAAAACCAAAGACTTGAAATTAACAGTTGTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATA</genome_strand>
        <mrna_strand>T...............................................................................................................................................................GTGTCTCTTCTTACTGAAAATGGAAACTCCACAGTCGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTAATATTTTACTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281376" ref_strand="-" ref_description="SGN-E281376 [cLEL-1-N14]">
      <seq>gtttgttctaattataatcttgaagctggacttgtttttgctaattcttttgttatacctgttttgagtgttgtcatcggttcattcttttggctaggtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacacgggatatctattggcatggcttgaatacttgaaactctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58476" stop="108779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58776" g_stop="58947" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59039" g_stop="59283" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="417" r_length="245" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59284" i_stop="60602" i_length="1319">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60603" g_stop="60617" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="432" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281376" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58776" e_stop="58947"/>
          <exon e_start="59039" e_stop="59283"/>
          <exon e_start="60603" e_stop="60617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCGCCACCCTCTTCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCACCACCCTCTCCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATTGAGTACTCATACCTTTTATGTATTAGTTCCATGAATGACGATGATTTGCTAGTAGCTAGGGTATGAATGATCTTAAAGTATAATCGATCGTAAAATTGATCGGAGTAATTTTTGGATAATGCAGTAGTAAATTTGGATCATATTATATCCATATAAAGCAAAATGCTCCAATTATTTGCGTGTATAATAATAACATAATTTTCTTAACATTAAATTAATGAACATCAAACACTTGGTACGAAGTTTTCTTCAAGTTAGATCTTAATTGACCTTACTATACCACCAAGTTGTGTTGCGTGATGAACGAGATTTCTTCATCCCTAATTAAAAGTCTCGAGAATATAAGCTTGAATAGAGCACTAGATCAAAGAAACTATAGCTACTTGTGATATACTAATGTAAGTTATCTATTAAACAAGATCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCCCGGCAACAGAAATTTTTTTCTTTTTGTCTTACATGACATAATCTTTCAGTATTTACTTATGCACACTTAAAAGTAAAAAAACGATAACTTAATTTATCGAGATTAGGAACATAATTTGCTAACCAAACACCCCTGATTAGGCATATTTTATATACAAGTGATTTATGATTATGTAGATAATAATTGTCCTAGATAAAGAGTATTCAATAACTAAGACAAGACAATTGAATTAACTACTTGAACAAAACTGGACAGATATTAGGTACTGGTTTATGTTTGTCTATTAATATTAATAAAATACAAAATAGATGGCCTTAAAATATTAGGTATTAGACTTGCAAATTATAGCTAAGAGACAAAAAAATAATAA</genome_strand>
        <mrna_strand>GTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACGGGATATCTATTGGCATGGCTTGAATACTTGAAACTCTAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281386" ref_strand="-" ref_description="SGN-E281386 [cLEL-1-P10]">
      <seq>tttgtgtctcttcttactgaaaatggaaacaccaaagacgacctcagacttcccaccgatgacaccctgttgaaccaggttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacgcgttatatctattggcatggcttgaatagttgaaactctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58573" stop="108777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58873" g_stop="58947" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="78" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59039" g_stop="59296" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="336" r_length="258" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E281386" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281386" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58873" e_stop="58947"/>
          <exon e_start="59039" e_stop="59296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGC</genome_strand>
        <mrna_strand>GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG...........................................................................................GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACGCGTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224278" ref_strand="+" ref_description="SGN-E224278 [cLEL-19-C16](-)">
      <seq>tgttgaaccaaggttaaaggtgaatttgagaaaggaaaggatctcgttctgtctgtgatgactgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58737" stop="122649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58937" g_stop="58947" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59039" g_stop="59346" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="320" r_length="308" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224278" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58937" e_stop="58947"/>
          <exon e_start="59039" e_stop="59346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAACC-AGGTACATTTTTTTGATGGATAAAACACGAAGAACGTTTATTTTCTAGTTTTTTCATGCGTAATATCTGAGCAAAGCTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTT</genome_strand>
        <mrna_strand>TGTTGAACCAAG...........................................................................................GTTAAAGGTGAATTTGAGAAAGGAAAGGATCTCGTTCTGTCTGTGATGACTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227685" ref_strand="+" ref_description="SGN-E227685 [cLEL-30-H4](-)">
      <seq>gttaaaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgcatgcaatgggggaaaaacacatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtgggacctttcgcaatctgttttatcgtgaaaaccccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58739" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59039" g_stop="59327" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59328" i_stop="60595" i_length="1268">
            <donor d_prob="0.695" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60596" g_stop="60627" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="322" r_length="32" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E227685" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59039" e_stop="59327"/>
          <exon e_start="60596" e_stop="60627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTT-GCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTGTCAGCTGTTAAACATCCTTGAGCTGACGGTCATTCGAAACAGCCTTTCTACCTTCAAAAGGTAGGGGTAAGGTAGTGTACGCACCACCCTCTTCCGACTCTATTACGAGATTTCACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCGCCACCCTCTTCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATCGAGTACTCATACCTTTTATGTATCAGTTCCATGGTAAGGGTAAGGTAGTGTACGCACCACCCTCTCCCAACTCCATTACGAGATTTTACTGGATATGTTGTAGTTAGATACATTGAGTACTCATACCTTTTATGTATTAGTTCCATGAATGACGATGATTTGCTAGTAGCTAGGGTATGAATGATCTTAAAGTATAATCGATCGTAAAATTGATCGGAGTAATTTTTGGATAATGCAGTAGTAAATTTGGATCATATTATATCCATATAAAGCAAAATGCTCCAATTATTTGCGTGTATAATAATAACATAATTTTCTTAACATTAAATTAATGAACATCAAACACTTGGTACGAAGTTTTCTTCAAGTTAGATCTTAATTGACCTTACTATACCACCAAGTTGTGTTGCGTGATGAACGAGATTTCTTCATCCCTAATTAAAAGTCTCGAGAATATAAGCTTGAATAGAGCACTAGATCAAAGAAACTATAGCTACTTGTGATATACTAATGTAAGTTATCTATTAAACAAGATCCGTTGTAGTCTAGTTGGTTAGGATACTCGGCTCTCACCCGAGAGACCCGGGTTCAAGTCCCGGCAACAGAAATTTTTTTCTTTTTGTCTTACATGACATAATCTTTCAGTATTTACTTATGCACACTTAAAAGTAAAAAAACGATAACTTAATTTATCGAGATTAGGAACATAATTTGCTAACCAAACACCCCTGATTAGGCATATTTTATATACAAGTGATTTATGATTATGTAGATAATAATTGTCCTAGATAAAGAGTATTCAATAACTAAGACAAGACAATTGAATTAACTACTTGAACAAAACTGGACAGATATTAGGTACTGGTTTATGTTTGTCTATTAATATTAATAAAATACAAAATAGATGGCCTTAAAATATTAGGTATTAGACTTGCAAATTATAGCTAAGAGACAAAAAAATAATAATTAATACTAA</genome_strand>
        <mrna_strand>GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGCATGCAATGGGGGAAAAACACATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGGACCTTTCGCAATCTGTTTTATCGTGAAAACCCCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233935" ref_strand="+" ref_description="SGN-E233935 [cLEL-8-E16](-)">
      <seq>gaaccaggtggatttgaggaaggaaaggatctcgttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaacaccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtcactttttttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58744" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59039" g_stop="59371" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E233935" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59039" e_stop="59371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGAT</genome_strand>
        <mrna_strand>GAACCAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224713" ref_strand="+" ref_description="SGN-E224713 [cLEL-27-N20](-)">
      <seq>gttctgtctgtgatgtctgcaatgggtgaagagcagatctgtgctgtgaaggacattggtaccaagacctagttgtgtgcattctgcagcataaataattgctttttagcgaagacgttttatatcttgttatcgtggtacctttgcaatctgttttatcgtgaaaaccccttatatctattggcatggcttgaatagttgaaactctaatagtttctgtttggcataaggcaatgaactggatttgatagcagaagtaatctacatgtccctttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58772" stop="131266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59072" g_stop="59385" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224713" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59072" e_stop="59385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATAC</genome_strand>
        <mrna_strand>GTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACCCCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCCCTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730369" ref_strand="+" ref_description="SGN-E730369 [LA23DF08]">
      <seq>cgtgtagtcaaaagaggagcttgagatggatgataaaaatggccaccagccatccccttcattgcttccttttgatgttccttcgatacttaggcgacaagagtcattgtattccaacttttcacttagtgcttcatgttcttctgatgcctcgacggattcatatcacagcagtgcttcaactggtaggatatatagaatgaatagtacctcaagcagaaggaagcagttggcgtcgaagtccaaaaggatagtttcagatgatatatcagactcttcaattgatggttcacaatcaaagaaaagatgtgcctgggtgacacctaatacagatccatcttatgctaatttccacgatgaagaatggggagttccagtccatgacgacaagaagctattcgagctccttgtcctttgcggggcattggctgaactcacctggccttccattctttgcaagaggcacatattcagagaagtattcgcagattttgatcccatagtagtggccaagttgaatgaaaagaagactttagctcctggaggtacggcatgctcactattatcagaacttaaactgcgtggcatcattgaaaatgctcgtcaaatgttgaaggttatagatgaatttggatcatttgacaagtatatctggagctttgtgaaccacaagcctatagtaagtggatttagatatcctcgtcaagttccggtgaagacagcaaaagcagatctgattagcaaagacctaattaggagaggtttccggggcgtgggacctactgtggtctactctttcatgcaggttgctggtattacaaatgaccatcttattagntgctttagatttcctgactgtgntgaatctgctgaaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65553" stop="61767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65254" g_stop="64923" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="390" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63955" g_stop="63872" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="474" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63871" i_stop="63292" i_length="580">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63291" g_stop="63150" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="616" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63149" i_stop="62330" i_length="820">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62329" g_stop="62067" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="879" r_length="263" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E730369" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65254" e_stop="64923"/>
          <exon e_start="64085" e_stop="64028"/>
          <exon e_start="63955" e_stop="63872"/>
          <exon e_start="63291" e_stop="63150"/>
          <exon e_start="62329" e_stop="62067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAGGTGTGTTCTTGGTAGTTCTTTTTTTCAAAATTTACTATATTTGGATTTTGATTGTTTGTTGCTTCTGATATTACACCGTCCAAAGCAATTATTGTTGAAATTTAATCGAGAAATGTTCTAAATTAGAAGGTTAATTGCAGCCTGTTAGCTGATATTTCCTGTTCTTCTTTACCATCATTTTTGGAGGTGACCATGAAGGGGGTGATTCTTTTAGAGATGTTTCAAGATGAAAATTGTGGAAATTGGAACAATTTTTATGTATAAGTGCCCTGACTATTGAATAAGTAAATGCATAATACATAGATAGACACTATACTTGGCCTTAACTAGCAACTAATGTTCCAACTTTGAGTATGCATGTCTAGACACCTCAATTCATTTCGACTGGGTCAGTTGAACAGTCCAACTTGCAAAATATGATCATCGAGACACCTCCAAAATTTATGTGTAACTTCAATGTTGGGTGTCCAAAGAAACTGTGAGGATGAGCTAGAGTGTTTGATCACCAATTGACATCAAGTTGAGATGTGTGTACTCTCAAAGTTGGGGTGCTTACTTGCCAGCTGAGGCCAAGTTCGAGTTTCTGTTTATGTATTTTTGAAATCCTTTGGCTGCACAGTATATGAATTGGCTATAGCAAGACCTTATTATCTTCTACTTCCAGTACTGTTGGCTATAGGAAATGTCAGACTGAATTTGAAAGCTGCAGAAAACTTTAAATAATTTTGAGAGTATATACTGACGATTAAAATCCTTGTTAAGCTATATATATATATATAGTACGACCTATACAATTTTGAGCTTGTAGTTTCTTATATTGTTTCTCCTTTTAACCAGATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAAGTAAGTTGCCAGATTCTTGTCCAGAGAATTCTCACACAATATATAGATTCTAATTCTTATTGAATCTTGCAGGAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTAAGCACTCAAACTTTGAGAGTGCACAGTGAGACACCTCAACTTTGTCTCAATTGACAACTAAACACTCCAACCCTCACCGTGTCTCGTGGACATTTGATGCAGACGTGACACATAACATTTGAAGGTGTCTAGATAATCATTTTGTAAGGTGGAGTGTTCAACTGACATGCGGAGACAAGTTGAAATGTCTAGATGTGCATATTCAAAGCTGAAGTGTTTACTCGTCAAAACTGAGGCCAAGTTTGAGTGTGTGTTTATGTAATTATGCCTATATTTTTCCTTTAAGGATCTGCTTCCAATTATTCATGTTACTTGTCAATAAAAGGGATTAACAAGTTCTAGTTCTCCTGTCCTGGGCTAGGATGGTCTGCTATGTTTTGTCTTCCGAGTTCTTTCTTGCATTACCTCGCCATCTCTCTACCATAACTTTCAGAAATTTTAAAAAAATTGTGATGCAGAGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAGGTATTGCTCTCTTATCCAGCTAGAAATAGTGGTCACTTCCACCTTGATTCAACTTGTTTGCGTTTACTAATATGTATAGGGTGGTCCAATAGCTAACATCAACTATTTAGGATAAACACTTACATGTGTTCCAACTTATAGGCAATTTACTGGCTAATTAAATGAAAAAATCATTCTGATTGTCGAATTTCTGAAGTAATAGTATGATTTTATCGGGAGTCTCTTCCGTGGACCACTCTCGATTCTTCTTATTTAAATGTAGGATATTCAATCAGTTATTGGATTAGGTAGAGAAGTAAGTTAATAGTGGTCCTGGTGATAAGTCAGTTTGTTTGATCTGTACCGACAACTGGCAAGTTCACTTGAGGCAGGCTTACCTTAATATTTCAAACTAGAAAGTAATGCCAGCTGGTTATACCTAGTACTTCTTCCGTTTCAATTTGTTTGTCTGGCTTTGATTTGGCACGGACTTTAAGAAAGTAAAGAAGACTATTGAATCTTGTGGTCTTTAACTAAAAATAGGTTGAATGAACCCAAATATCCTTTAAATTGCGGTCTTAAAATGCCTTGTGAAAAGTTGAAATCAAAGAGCTCCCAAAAACGGAAAGAGACGTTCTTTTTGAAATGGAACTCTTCTTAATGACTGTGCTATTTTGCTTGGACTCTTCAAAAATCACTGTGTATGTCTGATTTTTTGTGGATCAGACACCGACTCAACAACATTTTTTGAGGTTCTGAATAACATAGCCGGTTTGTGGCCTAGTGACAGGTTTTGTGAAACACAAGCTTAAATAATTAATTTTATGCTGTTTTATGTCAGGTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAGGTAA</genome_strand>
        <mrna_strand>CGTGTAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGCCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA........................................................................GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGNTGCTTTAGATTTCCTGACTGTGNTGAATCTGCTGAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729885" ref_strand="+" ref_description="SGN-E729885 [LA22BF04]">
      <seq>gtgaagtcaaaagaggagcttgagatggatgataaaaatggtcaccagccatccccttcattgcttccttttgatgttccttcgatacttaggcgacaagagtcattgtattccaacttttcacttagtgcttcatgttcttctgatgcctcgacggattcatatcacagcagtgcttcaactggtaggatatatagaatgaatagtacctcaagcagaaggaagcagttggcgtcgaagtccaaaaggatagtttcagatgatatatcagactcttcaattgatggttcacaatcaaagaaaagatgtgcctgggtgacacctaatacagatccatcttatgctaatttccacgatgaagaatggggagttccagtccatgacgacaagaagctattcgagctccttgtcctttgcggggcattggctgaactcacctggccttccattctttgcaagaggcacatattcagagaagtattcgcagattttgatcccatagtagtggccaagttgaatgaaaagaagactttagctcctggaggtacggcatgctcactattatcagaacttaaactgcgtggcatcattgaaaatgctcgtcaaatgttgaaggttatagatgaatttggatcatttgacaagtatatctggagctttgtgaaccacaagcctatagtaagtggatttagatatcctcgtcaagttccggtgaagacagcaaaagcagatctgattagcaaagacctaattaggagaggtttccggggcgtgggacctactgtggtctactctttcatgcaggttgctggtattacaaatgaccatcctattagttgctttagatttcctgactgtgttgaatctgctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65553" stop="61771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65253" g_stop="64923" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="389" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63955" g_stop="63872" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="473" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63871" i_stop="63292" i_length="580">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63291" g_stop="63150" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="615" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63149" i_stop="62330" i_length="820">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62329" g_stop="62071" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="874" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E729885" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65253" e_stop="64923"/>
          <exon e_start="64085" e_stop="64028"/>
          <exon e_start="63955" e_stop="63872"/>
          <exon e_start="63291" e_stop="63150"/>
          <exon e_start="62329" e_stop="62071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAGGTGTGTTCTTGGTAGTTCTTTTTTTCAAAATTTACTATATTTGGATTTTGATTGTTTGTTGCTTCTGATATTACACCGTCCAAAGCAATTATTGTTGAAATTTAATCGAGAAATGTTCTAAATTAGAAGGTTAATTGCAGCCTGTTAGCTGATATTTCCTGTTCTTCTTTACCATCATTTTTGGAGGTGACCATGAAGGGGGTGATTCTTTTAGAGATGTTTCAAGATGAAAATTGTGGAAATTGGAACAATTTTTATGTATAAGTGCCCTGACTATTGAATAAGTAAATGCATAATACATAGATAGACACTATACTTGGCCTTAACTAGCAACTAATGTTCCAACTTTGAGTATGCATGTCTAGACACCTCAATTCATTTCGACTGGGTCAGTTGAACAGTCCAACTTGCAAAATATGATCATCGAGACACCTCCAAAATTTATGTGTAACTTCAATGTTGGGTGTCCAAAGAAACTGTGAGGATGAGCTAGAGTGTTTGATCACCAATTGACATCAAGTTGAGATGTGTGTACTCTCAAAGTTGGGGTGCTTACTTGCCAGCTGAGGCCAAGTTCGAGTTTCTGTTTATGTATTTTTGAAATCCTTTGGCTGCACAGTATATGAATTGGCTATAGCAAGACCTTATTATCTTCTACTTCCAGTACTGTTGGCTATAGGAAATGTCAGACTGAATTTGAAAGCTGCAGAAAACTTTAAATAATTTTGAGAGTATATACTGACGATTAAAATCCTTGTTAAGCTATATATATATATATAGTACGACCTATACAATTTTGAGCTTGTAGTTTCTTATATTGTTTCTCCTTTTAACCAGATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAAGTAAGTTGCCAGATTCTTGTCCAGAGAATTCTCACACAATATATAGATTCTAATTCTTATTGAATCTTGCAGGAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTAAGCACTCAAACTTTGAGAGTGCACAGTGAGACACCTCAACTTTGTCTCAATTGACAACTAAACACTCCAACCCTCACCGTGTCTCGTGGACATTTGATGCAGACGTGACACATAACATTTGAAGGTGTCTAGATAATCATTTTGTAAGGTGGAGTGTTCAACTGACATGCGGAGACAAGTTGAAATGTCTAGATGTGCATATTCAAAGCTGAAGTGTTTACTCGTCAAAACTGAGGCCAAGTTTGAGTGTGTGTTTATGTAATTATGCCTATATTTTTCCTTTAAGGATCTGCTTCCAATTATTCATGTTACTTGTCAATAAAAGGGATTAACAAGTTCTAGTTCTCCTGTCCTGGGCTAGGATGGTCTGCTATGTTTTGTCTTCCGAGTTCTTTCTTGCATTACCTCGCCATCTCTCTACCATAACTTTCAGAAATTTTAAAAAAATTGTGATGCAGAGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAGGTATTGCTCTCTTATCCAGCTAGAAATAGTGGTCACTTCCACCTTGATTCAACTTGTTTGCGTTTACTAATATGTATAGGGTGGTCCAATAGCTAACATCAACTATTTAGGATAAACACTTACATGTGTTCCAACTTATAGGCAATTTACTGGCTAATTAAATGAAAAAATCATTCTGATTGTCGAATTTCTGAAGTAATAGTATGATTTTATCGGGAGTCTCTTCCGTGGACCACTCTCGATTCTTCTTATTTAAATGTAGGATATTCAATCAGTTATTGGATTAGGTAGAGAAGTAAGTTAATAGTGGTCCTGGTGATAAGTCAGTTTGTTTGATCTGTACCGACAACTGGCAAGTTCACTTGAGGCAGGCTTACCTTAATATTTCAAACTAGAAAGTAATGCCAGCTGGTTATACCTAGTACTTCTTCCGTTTCAATTTGTTTGTCTGGCTTTGATTTGGCACGGACTTTAAGAAAGTAAAGAAGACTATTGAATCTTGTGGTCTTTAACTAAAAATAGGTTGAATGAACCCAAATATCCTTTAAATTGCGGTCTTAAAATGCCTTGTGAAAAGTTGAAATCAAAGAGCTCCCAAAAACGGAAAGAGACGTTCTTTTTGAAATGGAACTCTTCTTAATGACTGTGCTATTTTGCTTGGACTCTTCAAAAATCACTGTGTATGTCTGATTTTTTGTGGATCAGACACCGACTCAACAACATTTTTTGAGGTTCTGAATAACATAGCCGGTTTGTGGCCTAGTGACAGGTTTTGTGAAACACAAGCTTAAATAATTAATTTTATGCTGTTTTATGTCAGGTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAG</genome_strand>
        <mrna_strand>GTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA........................................................................GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCCTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689646" ref_strand="-" ref_description="SGN-E689646 [LH_Ea01H04]">
      <seq>ttaaatttcttaaagttatggtagagagatggcaagggtgatgcaagaaagaactcggaagacaagacatagcggaccatcctagcccaggacaggagaactagaacttgttaatcccttttattgacaggtaacatgaataattggaagcagacccttaaaggaaaaatataggcataatcacataaatacacactcaaacgtggcctcagcccccaacactcaaccttacaaaatgatcatctagacaccttcaaatgttatgtgtcacgtctgcatcaaatgtccgcgagacacagtgagggttggagtgtttagttgtcagttgagaccaagttgaggtgtctcactgtgcactctcaaagtttgagtgcttacttgtggattgggaccaagtttgaatgtgtattatgtattatgccaccacattaactgttttcctggtgaagaaataacactttcatctatcaaataaaagaacttatcccaaacagtacctgaatatgtgcctcttgcaaagaatggaaggccaagtgagttcagcgaatgccccgcaaaggccaaggagctaacggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="63008" stop="64244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63309" g_stop="63528" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63529" i_stop="63595" i_length="67">
            <donor d_prob="0.851" d_score="0.80"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63596" g_stop="63952" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="578" r_length="357" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E689646" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689646" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63309" e_stop="63528"/>
          <exon e_start="63596" e_stop="63952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGA-GGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGAGTAAACACTTCAGCTTTGAATATGCACATCTAGACATTTCAACTTGTCTCCGCATGTCAGTTGAACACTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGC</genome_strand>
        <mrna_strand>TTAAATTTCTTAAAGTTATGGTAGAGAGATGGCAAGGGTGATGCAAGAAAGAACTCGGAAGACAAGACATAGCGGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAGGTAACATGAATAATTGGAAGCAGACCCTTAAAGGAAAAATATAGGCATAATCACATAAATACACACTCAAACGTGGCCTCAGCCCCCAACA...................................................................CTCAACCTTACAAAATGATCATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCGCGAGACACAGTGAGGGTTGGAGTGTTTAGTTGTCAGTTGAGACCAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCACCACATTAACTGTTTTCCTGGTGAAGAAATAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAAGTGAGTTCAGCGAATGCCCCGCAAAGGCCAAGGAGCTAACGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344047" ref_strand="+" ref_description="SGN-E344047 [cTOF-12-L7]">
      <seq>gcagaggggagttttgttcaatgtcaggagcttcaagagtaaggtcaatgaatgtagctgattcagaagcaaggccagttcttggactagctgggaataaggcacagagatcacctggttcaagaaaatctatttcgaaacctacgagaaagatagtgaagtcaaaagaggagcttgagatggatgataaaaatggtcaccagccatccccttcattgcttccttttgatgttccttcgatacttaggcgacaagagtcattgtattccaacttttcacttagtgcttcatgttcttctgatgcctcgacggattcatatcacagcagtgcttcaactggtaggatatatagaatgaatagtacctcaagcagaaggaagcagttggcgtcgaagtccaaaaggatagtttcagatgatatatcagactcttcaattgatggttcacaatcaaagaaaagatgtgcctgggtgacacctaatacagatccatcttatgctaatttccacgatgaagaatggggagttccagtccatgacgacaagaagctattcgagctccttgtcctttgcggggcattggctgaactcacctggccttccattctttgcaagaggcacatattcaggtactgtttgggataagttcttttatttgatagatgaaagtgttacttcttcaccaggaaaacagttaattttttggcataatacataatacacattcaaacttggtcccaatccacaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="65708" stop="63450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65408" g_stop="64923" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64028" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="544" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63955" g_stop="63750" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="750" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E344047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65408" e_stop="64923"/>
          <exon e_start="64085" e_stop="64028"/>
          <exon e_start="63955" e_stop="63750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAGGTGTGTTCTTGGTAGTTCTTTTTTTCAAAATTTACTATATTTGGATTTTGATTGTTTGTTGCTTCTGATATTACACCGTCCAAAGCAATTATTGTTGAAATTTAATCGAGAAATGTTCTAAATTAGAAGGTTAATTGCAGCCTGTTAGCTGATATTTCCTGTTCTTCTTTACCATCATTTTTGGAGGTGACCATGAAGGGGGTGATTCTTTTAGAGATGTTTCAAGATGAAAATTGTGGAAATTGGAACAATTTTTATGTATAAGTGCCCTGACTATTGAATAAGTAAATGCATAATACATAGATAGACACTATACTTGGCCTTAACTAGCAACTAATGTTCCAACTTTGAGTATGCATGTCTAGACACCTCAATTCATTTCGACTGGGTCAGTTGAACAGTCCAACTTGCAAAATATGATCATCGAGACACCTCCAAAATTTATGTGTAACTTCAATGTTGGGTGTCCAAAGAAACTGTGAGGATGAGCTAGAGTGTTTGATCACCAATTGACATCAAGTTGAGATGTGTGTACTCTCAAAGTTGGGGTGCTTACTTGCCAGCTGAGGCCAAGTTCGAGTTTCTGTTTATGTATTTTTGAAATCCTTTGGCTGCACAGTATATGAATTGGCTATAGCAAGACCTTATTATCTTCTACTTCCAGTACTGTTGGCTATAGGAAATGTCAGACTGAATTTGAAAGCTGCAGAAAACTTTAAATAATTTTGAGAGTATATACTGACGATTAAAATCCTTGTTAAGCTATATATATATATATAGTACGACCTATACAATTTTGAGCTTGTAGTTTCTTATATTGTTTCTCCTTTTAACCAGATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAAGTAAGTTGCCAGATTCTTGTCCAGAGAATTCTCACACAATATATAGATTCTAATTCTTATTGAATCTTGCAGGAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTA</genome_strand>
        <mrna_strand>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA........................................................................GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309926" ref_strand="+" ref_description="SGN-E309926 [cLEZ-10-M24]">
      <seq>tctcctaagacatttgttcttctttctctcttatagtatttcacttatactcttttggagtgaaataaatattggttgtttgtgtccgaggagtaggcaaaagaaaacaaaagtttgccgaacctcattaattcctggtgttctttctcttgttgtctcatttactatttattagctacctttagatatagtagttgtgattccatcactctctatatattcgacttccgcaacgacagacaaagcttcaatgttagatgagatcatcgattatgtcaggttcctccagctccaagtcaaagtactctctctctcttcacatttattgttctttggcttaaaaattggaaacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83752" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83452" g_stop="83218" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83217" i_stop="82789" i_length="429">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82788" g_stop="82668" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="356" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E309926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83452" e_stop="83218"/>
          <exon e_start="82788" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTAAGACATTTGTTCTTCTTTCTCTCTTATAGTATTTCACTTATACTCTTTTGGAGTGAAATAAATATTGGTTGTTTGTGTCCGAGGAGTAGGCAAAAGAAAACAAAAGTTTGCCGAACCTCATTAATTCCTGGTGTTCTTTCTCTTGTTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAGTAGTTGTGATTCCATCACTCTCTATATATTCGACTTCCGCAACGGTATATTACTATATCTACGATTAGTTAGTGTGTATAAGTTCAATATTTATAGTTCTTAATCTAGAGTATTATAATTTTTAAAATCATGTATATAAAACTCTTATTTATTGTAGTTTACTGAGTTTTCACGTATAAATATTTGTTATATGTCAAAAATATTCAAGTTAGATGCTGGCTCTGATCGAGTAATAGAAACACTGATTTTTTGTATTTTATCTATCGATTTCTTGTTCATAAAATTAAAATATTAGCAATGGTCATAAACTGAACTCTTTTGAATTTCTAGATAATGAGTCATCTAAATAACTAATTAAAAATTGTGCTTTATGACATTGTGATATATTATTTTATTAGCTAAATGTTATAATTATTGGAAAACGAACGATATAATATTAGGAACTAACGTGATTGTGATTTATGGAATGACAGACAGACAAAGCTTCAATGTTAGATGAGATCATCGATTATGTCAGGTTCCTCCAGCTCCAAGTCAAAGTACTCTCTCTCTCTTCACATTTATTGTTCTTTGGCTTAAAAATTGGAAACAGAT</genome_strand>
        <mrna_strand>TCTCCTAAGACATTTGTTCTTCTTTCTCTCTTATAGTATTTCACTTATACTCTTTTGGAGTGAAATAAATATTGGTTGTTTGTGTCCGAGGAGTAGGCAAAAGAAAACAAAAGTTTGCCGAACCTCATTAATTCCTGGTGTTCTTTCTCTTGTTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAGTAGTTGTGATTCCATCACTCTCTATATATTCGACTTCCGCAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACAAAGCTTCAATGTTAGATGAGATCATCGATTATGTCAGGTTCCTCCAGCTCCAAGTCAAAGTACTCTCTCTCTCTTCACATTTATTGTTCTTTGGCTTAAAAATTGGAAACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346681" ref_strand="+" ref_description="SGN-E346681 [cTOF-28-G18]">
      <seq>gtaatagacaaggacactttccccaaagacgccctagagctaactgcatggacagaaagatggtcttgtaatggctgctcgtcacaaagtttatagacacattcagggggtacaattccatccggagagcatcatcacaagtgaaggcaagaccaatagtttacaattttatcaaactgatagagaggaaggaagaagcagaatctcaaaactagataactctctttacttgctgtacaaatttgtggtttcgcctcgataaaccgatgcaaaaatatgttatctgtctttgttgtaactttgctgagttaagttagaagttgtcaatacttgtcatggatttaattttgaaattctttagataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89152" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89452" g_stop="89556" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89557" i_stop="90314" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90315" g_stop="90573" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="366" r_length="260" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90574" i_stop="91002" i_length="429">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.131" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91003" g_stop="91022" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="386" r_length="20" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E346681" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89452" e_stop="89556"/>
          <exon e_start="90315" e_stop="90573"/>
          <exon e_start="91003" e_stop="91022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGATAACTGCATGGACAG-AAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAGGTAACAACCTCCATCCTTTATGAACAAAGTTAGCATTGTTATCACTCCGCTATGGATTCATTGCTCTGCGCTATCTATGACCTGGTGGAGAGATTCATATTTAGAGAATTTCTTAATGGTGATATGAACTAATGAAGGAAGAAAGTTATCGATAAGTTTGTTCAGACTTAACTCTGGATTCGCAACATTATACTTGTTGGAAAGAAAATTGTATACTTCTACTGTAAAAATCTCACGGGATACCTTTTTTCGACACTTCTATTTAATCTATACCCAGTTTTTAGAATTTTTACACATCTACTCACTTAGGACCAACTTTGTTCAGACTTAACTCTGGATTCGCAACATTATACTTGTTGGAAAGAAAATTATATACTTCTACTGTAAAAATCTCACGGGATACCTTTTTTCGACACTTCTATTTAATCTATACCCAGTTTTTAGAATTTTTACACATCTACTCACTTAGGACCAACTTTCGACATGCTGTGTTTCAATCAAAATGTCTGAAGTTACAGTTCAGGCAAAAATGGTTGAACTTTAGTTATATGTGCATGAACTTCAGGCGAGTCCTTCATCCACATGCAAAAGTCCTTGAACTTCATGCAAAAACGCCTAAACTTAGCCATATGAAACTTCAAACATTTTGTCTGAAGTTAGAATTCGTAACTTAAATATTGGCCCCAAAATCGAGTATCTTTGAACTAACTCGACTTGAATTTGATCACTCGTTTGCTTCTTGCTTGGTTAATTCTCAGGGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGA-CAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAACGTTGGTTTATCATTGAAGATGATATCATGAACATCTTGAGATATCTTCTTTCATCAGGTAAGTAAGATATCGACTTGACTACGACTACAAGACAGGCCGGAAGCGACTCGCTCCTATTCTCGTTGGGATTGGATATAGATGGGAAATCTATGGGTCAACTAGAAACAATCTCTCCACCCTACAAAGGTAGTAATGTCTGCGTACATCCTACTTTCTTCATACTCTTGGGTTTATACTATTTTAACGCGTACCTTTATTGCTCTAGTCCTTGAAAAAAAGGAAATAATCAAATATGGTATGTCTGTAGTATTATTCACCAATCAAATTGGGCTATAGTATTATTCAATTATACAAAAAAGAGACCTACTTTTTGTTAGACATAATTAATTCAGTTGGATTGGTGATAAGTGATAACAACGTGTGTTTTAGAAAAATCAGAATAATAAAAT</genome_strand>
        <mrna_strand>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGCTAACTGCATGGACAGAAAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGACCAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279228" ref_strand="-" ref_description="SGN-E279228 [cLEL-4-I7](-)">
      <seq>gcacgagatttcaaagcaccgttgaaaatggtgcttcgtccggcgagcacatgagtcattcccatttccaccccgtcgtcgtctcacgacgacttcctccaacagattctctcttccgttccttcttcttctccctggccagaaatctccggcgacggtcacccctacaatttcgacgaccatcagtcaactcttctggcttccaaactccggcagcatcagatcaacggcggtacctctgctgctgcagctgctaaagcgttgatgcttcagcagcagcttttgctttccagaggaatcgctggtaatggcggctctgggataaacggcgatcaaaacgacgacggtttgaattcggggaatgatatttcagttcaagctctttacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93859" stop="94988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94153" g_stop="94507" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94508" i_stop="94655" i_length="148">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94656" g_stop="94688" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="390" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E279228" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279228" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94153" e_stop="94507"/>
          <exon e_start="94656" e_stop="94688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAC-TCATTTCAAAGCACCGGCGAAAATGGTGCTTCGTCCGGCGAACACATGAGTCATTCCCATTTCGA-TCCGTCGTCGTCTCACGACGACTTCCTCCAACAGATTCTCTCTTCCGTTCCTTCTTCTTCTCCCTGGCCAGAAATCTCCGGCGACGGTCACCCCTACAATTTCGACGACCATCAGTCAACTCTTCTGGCTTCCAAACTCCGGCAGCATCAGATCAACGGCGGTACCTCTGCTGCTGCAGCTGCTAAAGCGTTGATGCTTCAGCAGCAGCTTTTGCTTTCCAGAGGAATCGCTGGTAATGGCGGCTCTGGGATAAACGGCGATCAAAACGACGACGGTTTGAATTCGGTGAGATTCATTTACCATAAAATTCAGTTCAGTACAGTGATTAATCAATCAAAATTAATTACCAAAAACTCAATTGAGTGACAGTTTAATCAAGTTTATGATTATAATTATCTGAATTATAGTAGATTGACGAATTGATTATATATAGGGGAATGATATTTCAGTTCAAGCTCTTTACAAT</genome_strand>
        <mrna_strand>GCACGAGATTTCAAAGCACCGTTGAAAATGGTGCTTCGTCCGGCGAGCACATGAGTCATTCCCATTTCCACCCCGTCGTCGTCTCACGACGACTTCCTCCAACAGATTCTCTCTTCCGTTCCTTCTTCTTCTCCCTGGCCAGAAATCTCCGGCGACGGTCACCCCTACAATTTCGACGACCATCAGTCAACTCTTCTGGCTTCCAAACTCCGGCAGCATCAGATCAACGGCGGTACCTCTGCTGCTGCAGCTGCTAAAGCGTTGATGCTTCAGCAGCAGCTTTTGCTTTCCAGAGGAATCGCTGGTAATGGCGGCTCTGGGATAAACGGCGATCAAAACGACGACGGTTTGAATTCG....................................................................................................................................................GGGAATGATATTTCAGTTCAAGCTCTTTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311410" ref_strand="+" ref_description="SGN-E311410 [cLEZ-18-P20]">
      <seq>ttccgttccttcttcttctccctggccagaaatctccggcgacggtcacccctacaatttcgacgaccatcagtcaactcttctggcttccaaactccggcagcatcagatcaacggcggtacctctgctgctgcagctgctaaagcgttgatgcttcagcagcagcttttgctttccagaggaatcgctggtaatggcggctctgggataaacggcgatcaaaacgacgacggtttgaattcggggaatgatatttcagttcaagctctttacaatggattcgctggatctcttggtcaaacctctaatcaatctcagcattttcaccattctcaggcccagagtttcggagctccggcggcgtcggtatcgatgaatcaaacgccggcggcgagtggttcagctggtggagcgcagccaaagcaacagaaagttagggctcgtagaggacaagcaactgatcctcacagcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93964" stop="95576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94264" g_stop="94507" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94508" i_stop="94655" i_length="148">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94656" g_stop="94748" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="337" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94749" i_stop="95134" i_length="386">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95135" g_stop="95276" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="479" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E311410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94264" e_stop="94507"/>
          <exon e_start="94656" e_stop="94748"/>
          <exon e_start="95135" e_stop="95276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTCCTTCTTCTTCTCCCTGGCCAGAAATCTCCGGCGACGGTCACCCCTACAATTTCGACGACCATCAGTCAACTCTTCTGGCTTCCAAACTCCGGCAGCATCAGATCAACGGCGGTACCTCTGCTGCTGCAGCTGCTAAAGCGTTGATGCTTCAGCAGCAGCTTTTGCTTTCCAGAGGAATCGCTGGTAATGGCGGCTCTGGGATAAACGGCGATCAAAACGACGACGGTTTGAATTCGGTGAGATTCATTTACCATAAAATTCAGTTCAGTACAGTGATTAATCAATCAAAATTAATTACCAAAAACTCAATTGAGTGACAGTTTAATCAAGTTTATGATTATAATTATCTGAATTATAGTAGATTGACGAATTGATTATATATAGGGGAATGATATTTCAGTTCAAGCTCTTTACAATGGATTCGCTGGATCTCTTGGTCAAACCTCTAATCAATCTCAGCATTTTCACCATTCTCAGGTCTGCATACACACACTATTTCATAAATTTCAATCGATTACAGAGATCATATGGAATAGTAGTTTTTTTCCCTCTAATTTATCGAAAACATCTGTTATACTGTTTTATTTTTCTCTGAATGCATTGCATTCATGTATAACCAGAGTTTATACAGAGTAATTTACCGGCGATCGATGTACTGTGAAAATATAGAATCAGAGTTTCGACAATAAATCAATTGCTATATATACATTTAGATACAGACGCTAACTCATATATTTCAGTATCAATTACAGAGATCTATGATATAATTTTTTCGCTAATCTATATAGTTTTTTTTTTGTTCAATCGGAGTTTATTGCGTATAATAAGTTATGGCGATTGATTTATGTTCTGTGAAAATATAGGCCCAGAGTTTCGGAGCTCCGGCGGCGTCGTTATCGATGAATCAAACGCCGGCGGCGAGTGGTTCAGCTGGTGGAGCGCAGCCAAAGCAACAGAAAGTTAGGGCTCGTAGAGGACAAGCAACTGATCCTCACAGCATTGCTG</genome_strand>
        <mrna_strand>TTCCGTTCCTTCTTCTTCTCCCTGGCCAGAAATCTCCGGCGACGGTCACCCCTACAATTTCGACGACCATCAGTCAACTCTTCTGGCTTCCAAACTCCGGCAGCATCAGATCAACGGCGGTACCTCTGCTGCTGCAGCTGCTAAAGCGTTGATGCTTCAGCAGCAGCTTTTGCTTTCCAGAGGAATCGCTGGTAATGGCGGCTCTGGGATAAACGGCGATCAAAACGACGACGGTTTGAATTCG....................................................................................................................................................GGGAATGATATTTCAGTTCAAGCTCTTTACAATGGATTCGCTGGATCTCTTGGTCAAACCTCTAATCAATCTCAGCATTTTCACCATTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGAGTTTCGGAGCTCCGGCGGCGTCGGTATCGATGAATCAAACGCCGGCGGCGAGTGGTTCAGCTGGTGGAGCGCAGCCAAAGCAACAGAAAGTTAGGGCTCGTAGAGGACAAGCAACTGATCCTCACAGCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538215" ref_strand="+" ref_description="SGN-E538215 [TUS-57-D24]">
      <seq>ttccgctgaatgaaattttgtgtcttgatcttctatctagttctgaaccattatataagttgttaccgctctgaacgtttaccttttcagagtataattattggcttttattttaatgatgataagttttattttaaaaaaaaaaaaaaaaaaaaactcggactctaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaacaacattgaaatctttggatattcttggactgggtactggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="102383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96865" g_stop="96968" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96969" i_stop="98266" i_length="1298">
            <donor d_prob="0.905" d_score="0.50"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98267" g_stop="98306" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="143" r_length="39" r_score="0.700"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98307" i_stop="98559" i_length="253">
            <donor d_prob="0.900" d_score="0.70"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98560" g_stop="98581" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="164" r_length="21" r_score="0.682"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98582" i_stop="99102" i_length="521">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99103" g_stop="99242" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="304" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="719" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101985" g_stop="102083" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="817" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E538215" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96865" e_stop="96968"/>
          <exon e_start="98267" e_stop="98306"/>
          <exon e_start="98560" e_stop="98581"/>
          <exon e_start="99103" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAACTTTCAGGTGTGTGCGGCCGCACCTTTTTTTTTATTTATTTTTTTATTTTACAAATAAAATCAATACATAATTAGTAATACATTTAGTGGCTAATAAAATTATACATTTAAATTATTTATAACTCATGTCTCTTCATCTTACTTGTAAAGTTTAATACTAAATATGAATCATGACTTTATATGCTTCATAAGTATTTAATTAATGTTTAAAAAATTATAATAAGCAAATGTAATAATAAAATAAAAGAAAACAATATTGTTTTGACGAAATCAGAGTTTGGATAGAACATCACTACTCCTAGAAAAGATAGAGAAAATTAAAACATTTAAAATATTTTCAACCTAATACAATATATTGTTATTTCAACATATTATCCCTTATTTCATTTACTTTATCACGGTGAATATTTTGTTCTAATATATACATATACAAAACAAACAAATATATATTATATGTTTTACAAAAGTTTATGATATCACAGACGAGAAGAAATATAAATATTATCTATATATTCGATACTAACGTAAATATTATATATTTCATATTATTATCTTATAAATATTTCATATAATCGCGCGAAGCGCGAATAGTTTCACTAGTTCTTAATATATACTGATATTTTTTCAATTACAAAGTCTTCTTTCACACATTTCGAGTTTCTTCAAGAATATAAAGTTTATTCAAGAGAAAACATTCTAACAATATTATTTTCTATATACGCTCATAGCTCAAACTCGATATATACCTACTATTACATTATTTTATTTCTAGAAGTCAACTCTCAAATTTTGAAGGTTATAAAGTCAGGCGTAAATTAGACCTATTGAATAATTAAAACAAAATAAAATAAATAGAACTAAACGATAATGAGTAAATTACAAATCATTAGTGACTCGTAAGAAGCACCAAAATGAGAAGTTCAAAATTGTTTAAGAAAATGATGCATATAACGTATGTAACTAAAGAAAATCGAAGAGAAAATCAATAAAAAAACATGTTAATATTTTTAAGATTGGATGAGATAATACTGGCTCTTCAATTATTTTGTTTCACAAAAAAATAATAATGACATTTAAAAACTGTAATCTTAAGAAATTAATTATTTTATTCCCTTTACTCATTTAAGAAAAGAATTTACATTTTTGACTAAGCATAGTGTTATAATAGATAAAATGATTCTTTACTCATAATATATAGTGTTTTAGTTTCTACTTGTGAAAAACTATTGGCGCAAAACACACAAAAGTTGCGGTGGACGTAAATTATGATAGAAAGTTAAATGAAAAATAATTTTTTGTTTCGTTCGTTTATATTAATAGTCATAATATTGGTTTTTCTAAAAAAATATTCTTCTGTTATTATTTTTCAATCATTATATTATTTTGTTGTTATTGTTGTTCATATTACTTTATTTATGCTCTATATTTGTTTTTGATTGAATATCAAAAATACCTTTAAATTTTTTTAAGTTTTCAAATTCATACAAAAACTATTAAGTGTACGAGTTTTTTTACATGAACTATCACCAAACGTTTATTGAAATCTCAATTACCAGTTGTTCACTTTTTCTACTGAACGATAATGATATTTTAGATAGAAAAAGAAAATAATTGATGATTAAGATATGTTTTGATAAATATGTAATTGACAATAGTTTCAAGTAGGAAAAGTTAATCGCTGAATGGCAAAAAACTCAAAAATTTAAAATATTTTGTTTGAATTATTTTTTTCTAGAGTAGAAAGCCTATCTAAAAATAACAGTAAGAATAATTTTGTTTAAGTATTTCCTCCATCCACCTTTAAAATTTTAAAATTCAAACAAATTTTCTTTGATCAAAATCTTTTAAATATTTAGCATGAATTATCAATTAGTTTTCAAAACTTTATATTAGTAATATTAAAATTTTTTAACTCTCGAAATTCGAATTATGCCAATTGCGGAACCCCAAAAAGACACGTCAATGCATACATCATTATCTTCTCAATTTGTCACTCAACAACAAGTCACACTGACCCTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTG</genome_strand>
        <mrna_strand>TTCCGCTGAATGAAATTTTGTGTCTTGATCTTCTATCTAGTTCTGAACCATTATATAAGTTGTTACCGCTCTGAACGTTTACCTTTTCAGAGTATAATTATTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATTTTAATGATGATAAGTTTTATTTTA-AAAAAAA.............................................................................................................................................................................................................................................................AAAAAAAAAAAAACT-CGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAA-CAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699202" ref_strand="+" ref_description="SGN-E699202 [FA09AB12]">
      <seq>ccttttaggtctctctatctacatataaatacacaaaaaattccattatcaatggccgcattgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaaatcagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98677" stop="102472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98976" g_stop="99242" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="682" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102172" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="870" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E699202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98976" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTT</genome_strand>
        <mrna_strand>CCTTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAAATCAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246421" ref_strand="+" ref_description="SGN-E246421 [cLEF-52-G4]">
      <seq>gtctctctatctacatataaataccaccaaaaaattccattatcaatggcccgcattgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcataccccttcaatttttacctaaatttcaatctagtccccatctggtctttttcaatttcagttaccaccccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatacctcttggtcttacctcatacctaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacataccttacagtaggtgccacagagaaggacttggctagagaccgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98684" stop="102077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98984" g_stop="99242" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="0.87"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101777" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="561" r_length="291" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E246421" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98984" e_stop="99242"/>
          <exon e_start="101489" e_stop="101777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTATCTACATATAAATA-CA-CAAAAAATTCCATTATCAATGG-CCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATA-CCCTTCAATTTTTA-CTAAATTTCAATCTAGT-CCCATCTGGTCTTTTTCAATTTCAGTTA-CA-CCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATA-CTCTTGGTCTTA-CTCATA-CTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATA-CTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGA-CGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</genome_strand>
        <mrna_strand>GTCTCTCTATCTACATATAAATACCACCAAAAAATTCCATTATCAATGGCCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCCTTCAATTTTTACCTAAATTTCAATCTAGTCCCCATCTGGTCTTTTTCAATTTCAGTTACCACCCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACCTCTTGGTCTTACCTCATACCTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACCTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACCGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747085" ref_strand="+" ref_description="SGN-E747085 [GI|27463708]">
      <seq>ccgttgctgtcgaaaaaattccattatcaatggccgcattgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98710" stop="106008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99010" g_stop="99242" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="245" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="660" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="855" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="1081" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1082" r_stop="1208" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1209" r_stop="1304" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1305" r_stop="1382" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1383" r_stop="1443" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1444" r_stop="1631" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="105424" g_stop="105708" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1632" r_stop="1916" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E747085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1904</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99010" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTG</genome_strand>
        <mrna_strand>AAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727323" ref_strand="+" ref_description="SGN-E727323 [LA14BE07]">
      <seq>aaaaaattccattatcaatggccgcattgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98710" stop="102472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99010" g_stop="99242" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="648" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102172" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="836" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E727323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99010" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTT</genome_strand>
        <mrna_strand>AAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254105" ref_strand="+" ref_description="SGN-E254105 [cLEG-34-P5]">
      <seq>aattccattatcaatggccgcattgagagtttcttcagcattggcttgttcatcttcttcgtcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttangggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98714" stop="102162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99014" g_stop="99242" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101862" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="603" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E254105" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99014" e_stop="99242"/>
          <exon e_start="101489" e_stop="101862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTC</genome_strand>
        <mrna_strand>AATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCGTCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTANGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248874" ref_strand="+" ref_description="SGN-E248874 [cLEF-49-E18]">
      <seq>cgcattgagagtttcttcagcattggcttgttcatcttcgtcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcaactgccaagtctgctcaggctagtaatatcgccattgctcttgcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98732" stop="102149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99032" g_stop="99242" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101849" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="572" r_length="361" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E248874" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99032" e_stop="99242"/>
          <exon e_start="101489" e_stop="101849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTA</genome_strand>
        <mrna_strand>CGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCGTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAACTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279131" ref_strand="-" ref_description="SGN-E279131 [cLEL-4-F5](-)">
      <seq>gcacgaggtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactacatctcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98738" stop="102020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99033" g_stop="99242" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101720" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="440" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E279131" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279131" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99033" e_stop="99242"/>
          <exon e_start="101489" e_stop="101720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAA</genome_strand>
        <mrna_strand>GCA-CGAG-GTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTACATCTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359466" ref_strand="+" ref_description="SGN-E359466 [cLHT-31-F1]">
      <seq>ttgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaagctagtaatatcgccatcgctcttgcttctacggatggactttctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98736" stop="102308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99036" g_stop="99242" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="622" r_length="415" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102008" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="646" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E359466" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99036" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAG</genome_strand>
        <mrna_strand>TTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAAGCTAGTAATATCGCCATCGCTCTTGCTTCTACGGATGGACTTTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331498" ref_strand="+" ref_description="SGN-E331498 [cTOD-9-C6]">
      <seq>ttgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98736" stop="102208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99036" g_stop="99242" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="622" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102000" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="638" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E331498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99036" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGAC</genome_strand>
        <mrna_strand>TTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709715" ref_strand="+" ref_description="SGN-E709715 [FA52DF10]">
      <seq>tgagagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcacgctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98737" stop="102310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99037" g_stop="99242" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="621" r_length="415" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102010" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="647" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E709715" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99037" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGAT</genome_strand>
        <mrna_strand>TGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCACGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321452" ref_strand="+" ref_description="SGN-E321452 [cTOB-23-O24]">
      <seq>agagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtacgtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaagggaggctgctgctgcanctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaatcaagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98739" stop="102408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99039" g_stop="99242" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="619" r_length="415" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102108" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="742" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E321452" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99039" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGC</genome_strand>
        <mrna_strand>AGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTACGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAAGGGAGGCTGCTGCTGCANCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAG-AAATCAAGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320591" ref_strand="+" ref_description="SGN-E320591 [cTOB-22-N13]">
      <seq>agagtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtacgtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctgggcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaagggaggctgctgctgcanctgccaagtctgctcaagctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98739" stop="102208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99039" g_stop="99242" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="619" r_length="415" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="101998" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="633" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E320591" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99039" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="101998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGG</genome_strand>
        <mrna_strand>AGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTACGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGGCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAAGGGAGGCTGCTGCTGCANCTGCCAAGTCTGCTCAAGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699544" ref_strand="+" ref_description="SGN-E699544 [FA10BH02]">
      <seq>ccgtttaatcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98742" stop="102383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99040" g_stop="99242" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="618" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102083" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="717" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E699544" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99040" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTG</genome_strand>
        <mrna_strand>CCGTTTAATCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690282" ref_strand="+" ref_description="SGN-E690282 [LH_Ea03B16]">
      <seq>tgtttcttcagcattggcttgttcatcttcttcatctttttactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccatcgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaaaaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98742" stop="102435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99041" g_stop="99242" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="617" r_length="415" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102135" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="768" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E690282" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99041" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACT</genome_strand>
        <mrna_strand>TGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTTACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATCGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAAAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323026" ref_strand="+" ref_description="SGN-E323026 [cTOB-30-N14]">
      <seq>agtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccatacaactggagctgtgctggggacatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98741" stop="102306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99041" g_stop="99242" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="616" r_length="414" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102006" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="638" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323026" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99041" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGA</genome_strand>
        <mrna_strand>AGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCAT-ACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299730" ref_strand="+" ref_description="SGN-E299730 [cLEW-1-D20]">
      <seq>gtttcttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98742" stop="102164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99042" g_stop="99242" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101864" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="577" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E299730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99042" e_stop="99242"/>
          <exon e_start="101489" e_stop="101864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTG</genome_strand>
        <mrna_strand>GTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701075" ref_strand="+" ref_description="SGN-E701075 [FA14DH03]">
      <seq>cttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggcaaaaagattgcgtccactaatagcgatgtcttttctgcaaacatcttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98746" stop="102636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99046" g_stop="99242" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="612" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="807" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102265" g_stop="102336" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="878" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E701075" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99046" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATG</genome_strand>
        <mrna_strand>CTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGG-CAAAAAGATTGCGTCCACTAATAGCGATGTCTTTTCTGCAAACATCTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330617" ref_strand="+" ref_description="SGN-E330617 [cTOD-8-L23]">
      <seq>ttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaagacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaagcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98747" stop="102078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99047" g_stop="99242" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101778" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="486" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E330617" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99047" e_stop="99242"/>
          <exon e_start="101489" e_stop="101778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTG</genome_strand>
        <mrna_strand>TTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAAGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAAGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316648" ref_strand="+" ref_description="SGN-E316648 [cTOB-7-P13]">
      <seq>ttcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98747" stop="102077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99047" g_stop="99242" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101777" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="485" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E316648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99047" e_stop="99242"/>
          <exon e_start="101489" e_stop="101777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</genome_strand>
        <mrna_strand>TTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359505" ref_strand="+" ref_description="SGN-E359505 [cLHT-31-D8]">
      <seq>tcagcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98748" stop="101998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99048" g_stop="99242" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101698" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="405" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E359505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99048" e_stop="99242"/>
          <exon e_start="101489" e_stop="101698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTG</genome_strand>
        <mrna_strand>TCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718816" ref_strand="+" ref_description="SGN-E718816 [FC05DF05]">
      <seq>gcattggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcaaagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaaagtcagagtcaaaaaaaaccaacattgaaatctttggatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98751" stop="102362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99051" g_stop="99242" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="607" r_length="415" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102062" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="687" r_length="80" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E718816" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99051" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTT-AAGTCAGAGTC-AAAGAAACCAACATTGAAATCTTTGGATATTC</genome_strand>
        <mrna_strand>GCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAAAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAAGTCAGAGTCAAAAAAAACCAACATTGAAATCTTTGGATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208271" ref_strand="+" ref_description="SGN-E208271 [cLEC-37-D24]">
      <seq>attggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98753" stop="102077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99053" g_stop="99242" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101777" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="479" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E208271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99053" e_stop="99242"/>
          <exon e_start="101489" e_stop="101777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</genome_strand>
        <mrna_strand>ATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578411" ref_strand="+" ref_description="SGN-E578411 [LE12DF04]">
      <seq>ttggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagggatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactgcacctgagatagagaagaaaatcaagtatgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98754" stop="102411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99054" g_stop="99242" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="604" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102111" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="731" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E578411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99054" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGC</genome_strand>
        <mrna_strand>TTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGGGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGCACCTGAGATAGAGAAGAAAATCAAGTATGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265708" ref_strand="+" ref_description="SGN-E265708 [cLEI-11-I1]">
      <seq>tggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtcttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98755" stop="102357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99055" g_stop="99242" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="602" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102057" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="675" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E265708" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99055" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGA</genome_strand>
        <mrna_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTT-CAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266710" ref_strand="+" ref_description="SGN-E266710 [cLEI-5-J2]">
      <seq>tggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtacgtgccacagagaaggacttggctagagacgggaattctaagctccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgatgaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaagctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98755" stop="102307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99055" g_stop="99242" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="603" r_length="415" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102007" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="626" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E266710" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99055" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAA</genome_strand>
        <mrna_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTACGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGCTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGATGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAAGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318465" ref_strand="+" ref_description="SGN-E318465 [cTOB-10-H22]">
      <seq>tggcttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaacaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtacgtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcgaaagctagattccaaatggagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98755" stop="102114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99055" g_stop="99242" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101814" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="514" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E318465" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99055" e_stop="99242"/>
          <exon e_start="101489" e_stop="101814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGC</genome_strand>
        <mrna_strand>TGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAACAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTACGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCGAAAGCTAGATTCCAAATGGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744576" ref_strand="+" ref_description="SGN-E744576 [GI|924629]">
      <seq>cctgaaatgaatggtgtactttgttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttacgtgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttagcgttggtatatcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98759" stop="106012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99242" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="204" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="619" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="814" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="1040" r_length="226" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1167" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1168" r_stop="1263" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1264" r_stop="1335" r_length="72" r_score="0.923"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1396" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1397" r_stop="1584" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="105424" g_stop="105720" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1585" r_stop="1880" r_length="296" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E744576" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1865</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAA</genome_strand>
        <mrna_strand>GTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTACGTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACAC-T--T-A-GCGTTGGTATAT-CCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAG-AAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700201" ref_strand="+" ref_description="SGN-E700201 [FA12BG07]">
      <seq>gttcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98761" stop="102625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99061" g_stop="99242" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="597" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="792" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102265" g_stop="102325" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="853" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E700201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99061" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAA</genome_strand>
        <mrna_strand>GTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271611" ref_strand="+" ref_description="SGN-E271611 [cLEM-23-L14]">
      <seq>ttcatcttcttcatcttttcacggatacccttcaatttttactaaatttcactctaatcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaaaatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98762" stop="101844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99062" g_stop="99242" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101544" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="237" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E271611" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99062" e_stop="99242"/>
          <exon e_start="101489" e_stop="101544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTAC</genome_strand>
        <mrna_strand>TTCATCTTCTTCATCTTTTCACGGATACCCTTCAATTTTTACTAAATTTCACTCTAATCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366140" ref_strand="+" ref_description="SGN-E366140 [cLPT-15-H12]">
      <seq>tcatcttcttcatcttttcactcatacccttcaatttttactaaatttcaatctagtcccatctggtctttttcaatttcagttacacccttgtgttcaagaagagctaaaagaatggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcagaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98763" stop="102077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99063" g_stop="99242" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101777" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="469" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E366140" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99063" e_stop="99242"/>
          <exon e_start="101489" e_stop="101777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</genome_strand>
        <mrna_strand>TCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAGAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338264" ref_strand="+" ref_description="SGN-E338264 [cTOE-13-G4]">
      <seq>cactcatacccttcaatttttactaaagagcaatctagtcccatctggtctttttcaatttcagatacaccctagtgttcaagaagagctaaaagaaaggctcattctatagctcgtgagactcttggtcttactgatactaatcaaagtgatgctcctaagattgcatctgctgctaaagagattgatctggtggaatggaaaggagacatacttacagaaggtgccacatagaatgacttggctagagacgggaattctaacttccagaatccactattgcaaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98781" stop="101917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99081" g_stop="99242" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101617" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="291" r_length="129" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E338264" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99081" e_stop="99242"/>
          <exon e_start="101489" e_stop="101617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTA</genome_strand>
        <mrna_strand>CACTCATACCCTTCAATTTTTACTAAAGAGCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGATACACCCTAGTGTTCAAGAAGAGCTAAAAGAAAGGCTCATTCTATAGCTCGTGAGACTCTTGGTCTTACTGATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATCTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGAAGGTGCCACATAGAATGACTTGGCTAGAGACGGGAATTCTAACTTCCAGAATCCACTATTGCAAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338126" ref_strand="+" ref_description="SGN-E338126 [cTOE-13-G14]">
      <seq>cccatctggtctttttcaatttcagatacacccttgtgttcgagaagagctaaaagaatggctcattctatcgctcgagatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctcaagagatcgatctggtggaatggaaaggagacatacttacagtgggtgccacagataaggacttggcttgagacaggaattctaatttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgatgaggattttactggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98820" stop="101976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99120" g_stop="99242" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101676" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="311" r_length="188" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E338126" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99120" e_stop="99242"/>
          <exon e_start="101489" e_stop="101676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAA</genome_strand>
        <mrna_strand>CCCATCTGGTCTTTTTCAATTTCAGATACACCCTTGTGTTCGAGAAGAGCTAAAAGAATGGCTCATTCTATCGCTCGAGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTCAAGAGATCGATCTGGTGGAATGGAAAGGAGACATACTTACAGTGGGTGCCACAGATAAGGACTTGGCTTGAGACAGGAATTCTAATTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGATGAGGATTTTACTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302495" ref_strand="+" ref_description="SGN-E302495 [cLEW-27-P24]">
      <seq>ctcgtgccgaatcggcacgagggctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataagtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98873" stop="102376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99176" g_stop="99242" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="85" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="500" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102076" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="592" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E302495" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99176" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACT</genome_strand>
        <mrna_strand>GAGGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAAGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701685" ref_strand="+" ref_description="SGN-E701685 [FA16CF08]">
      <seq>ctcattctattgctcgtgatactcttggtcttactcatactaatcaaagtgatgctcctaagatttcatttgctgctaaagagattgatctggtggaatggaaaggagacatacttacagtaggtgccacagagaaggacttggctagagacgggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="98881" stop="102479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99181" g_stop="99242" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101489" g_stop="101903" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="477" r_length="415" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="672" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E701685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99181" e_stop="99242"/>
          <exon e_start="101489" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAGGTGGTTTCTTGTTTTATTTTAGCAAAAAGATTTGATCTTTATTGGTTTTTTGTTAGGTTGGTTGGATTGATTTCTGATTTTTATTTGTGGGGTTTGGATTCTTGATCTGTGAGACTGTGTAGTTTTATCTTTATCTTTGGGGATTCAGTGGAAAGACTGGATTTTTGTTGATTTATTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTTGTGGTTTTGATTCTGATTTGTGTTTGTGATTCAGTGCCGAAAAGGGATTTTTATTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTGATTTGTGTTTGCGATTCAGTGCAAAGAAGGGACTTTTTCTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTCTTGTTTGTTTTTGTGGTTTGGATTCTGATTTATGTTTGTGATTCAGGGCAAAGAAGGGATTTTTTTTTTGTTTTTGGTGAATTTCAGTGCATAGAACTGTTTTTTTTGCTTGTTTCTGTTGTTTGGATTCTAATTTGTGATGATGTATACTTTCATTGTGATTCGTTGCAAAGAATGATTTGTTTATAGAGTAAAAGATTGGAAACATAGCTAAATGTTTATCGAATTTTCACCAAATGTTTATTGAAACATACCTCAGCTATCATTGAAAAAGGAAAAAGTGAGCAACTGATACTTGATGTTTCAAGTAGGAAACTGACATATATGATAGTTCATAGTTTAGGTATGGAACTAGAAAAATTCGTGATATGTTGGATGTGTTTTTGATCCTTTGCTCTTTTTTATATTCTTCTTATCTTGTTCTTGTGGACTTGGATTATGATTTGTGATAATGTATACTTTCATCTTTGTCTGTGATAATTCAGTGCAAAGAATGAATATTTTGTTGTTATTGTGAATTCAATGCATAGAACTGATTTTTCTTGTTCTTTTTCTCTTGTTTTTCGTGGGTTTGGATTCTGATTTGTGATAATGTATAACTTCATCTTCATCTTTGTGACTTCAGTGCAAATAATGGATCTTTTAGGTGTGAGTTCAGTGCATAGAGAACTGATTTTTCTTGTTCTTTTCTCTTGTTTTTTTGTGGTTTGTATACTGACAATATACTGATTTGTGATATTGTATACTTTCATCTTTATGTTTGTGAATTCAGTGTAAAGAAAGGATAGTTCTTCTCTTGTTTTGGAGGGTTCTTTGTGTCTGATTTGTGATACAATTAACTTTGAAATTCATCTTTATGAATTAAGAACTGATTTTTCTTATTTTATTGTTTTGCGTCCGCATTCTGATATGTTAAACCCTTGTCTTTCATGGTTATATTGTAATTTCAGTGCATAAAAGAACTAATTTTTGATTCTCTTTTGCTTGGGATTTTTCTTGGTCTCAGTTGGTAAGTGAGCACTTCAACTTTGAGAGTTCACATATAGACACCTCAACTCGTCTCCACTAAGTCCGTTGAACACTTCAACTTACGGAATGATCCATGTAGAGACCTCTAAAATTTTTGTGTCATGTCAGCCTTGGGTGTCCAAAAAACACATTAAGGACAAGTTGAGACCAAGTTGAGGTGTCTAGATATGTTCTCTTCAAGTTGGAGTGCTTACTTGTCAATTGAGGCTGAATTTAAGTGTCTCTTTATGTATTATGTCTATAAAAGATGAGTGTGATACCGTTACTCTCATGTTTATCTTTGTGAGCTTAACCTTTTGAAAAACTTATCTTTCTTATTTTGTTTTTGATGAGTCCGTATTTTGACTTCTGCGTGTGATACCTATACACTCATGTTTATCTTTGTTATGCTGTTTGATATTAGAGTAGCTAATGATTGTTTTATGCGAAATTGGTGTTATTTCCTTATCTCATGAATAAAAAAGACTTTTGATCTCCCAATCCTGTCATAAATATGCCATTATGTTCTATTTGAATTGACCTTTTGGAGTAGAATGTGCATTTATAGAGTGTAATGGATATAAAGTTTCAGATTGCTTACAAGTTACAACAAGTAGTTTGGGATTGAGTAGTAGTTCTGTAATTGGGACTCTTTTTCTGGGGGTGGCTATAATCCTAACATATCCTATCTTTAAGAGTGTAGATAATTTTTTTAATGTTCCATCGTTAGCATGCAGCCAATTGTTGATTCCTGCGATTCTTGTGTTTATACTCATGGAAGTTCTATAATTTCCGGACTAAATCTTTTTTCTATTTTTGGAACATGAAAGATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG</genome_strand>
        <mrna_strand>CTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305926" ref_strand="+" ref_description="SGN-E305926 [cLEY-17-L4]">
      <seq>ggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101280" stop="102627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101580" g_stop="101903" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="519" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102327" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="582" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E305926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101580" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACA</genome_strand>
        <mrna_strand>GGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305987" ref_strand="+" ref_description="SGN-E305987 [cLEY-17-L1]">
      <seq>ggaattctaagttccagaatccactattgcaaaagctagattccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101280" stop="102459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101580" g_stop="101903" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102159" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="499" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E305987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101580" e_stop="101903"/>
          <exon e_start="101985" e_stop="102159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACC</genome_strand>
        <mrna_strand>GGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203862" ref_strand="+" ref_description="SGN-E203862 [cLEC-17-E20]">
      <seq>ccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101322" stop="102622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101622" g_stop="101903" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="477" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102322" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="535" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E203862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101622" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGC</genome_strand>
        <mrna_strand>CCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203831" ref_strand="+" ref_description="SGN-E203831 [cLEC-17-E19]">
      <seq>ccaaattgagtggcttattgtctgaagcttcatctgaggaggattttagtggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101322" stop="102446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101622" g_stop="101903" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102146" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="444" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E203831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101622" e_stop="101903"/>
          <exon e_start="101985" e_stop="102146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGC</genome_strand>
        <mrna_strand>CCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316664" ref_strand="+" ref_description="SGN-E316664 [cTOB-7-F9]">
      <seq>ttgtctgaagcttcatctgaagaggattttactggaaaggctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaagctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101339" stop="102475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101639" g_stop="101903" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102175" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="456" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E316664" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101639" e_stop="101903"/>
          <exon e_start="101985" e_stop="102175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACG</genome_strand>
        <mrna_strand>TTGTCTGAAGCTTCATCTGAAGAGGATTTTACTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAAGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726679" ref_strand="+" ref_description="SGN-E726679 [LA12CA12]">
      <seq>gctggacaatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101378" stop="103232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101678" g_stop="101903" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="421" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="647" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="774" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102857" g_stop="102932" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="850" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E726679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101678" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTT</genome_strand>
        <mrna_strand>GCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706101" ref_strand="+" ref_description="SGN-E706101 [FA29AA10]">
      <seq>caatccacaattttgaggcttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgccactgttttgggtgccaacaaaagctcttggtcaaataaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101384" stop="103047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101684" g_stop="101903" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="415" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="641" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102633" g_stop="102748" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="758" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E706101" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101684" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTG-CAGCAAAAGCTCTTGGTCAGATAAAACCCG</genome_strand>
        <mrna_strand>CAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCCACTGTTTTGGGTGCCAACAAAAGCTCTTGGTCAAATAAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735584" ref_strand="+" ref_description="SGN-E735584 [LC02AH03]">
      <seq>cttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101402" stop="103242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101702" g_stop="101903" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="397" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="623" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="750" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102857" g_stop="102942" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="836" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E735584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101702" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAA</genome_strand>
        <mrna_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737446" ref_strand="+" ref_description="SGN-E737446 [LC09DE02]">
      <seq>cttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaaccccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101402" stop="103213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101702" g_stop="101903" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="397" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="623" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="751" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102857" g_stop="102913" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="808" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E737446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101702" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAA-CCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCT</genome_strand>
        <mrna_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736723" ref_strand="+" ref_description="SGN-E736723 [LC06DG07]">
      <seq>cttcctggtcttggctcaaaaaggattgctctagttgggcttggctcaccaacatcatcaactgctgcttatcgctgtttaggggaggctgctgctgcagctgccaagtctgctcaggctagtaatatcgccattgctcttgcttctacggatggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101402" stop="103207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101702" g_stop="101903" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="397" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="623" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="750" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102857" g_stop="102907" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="801" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E736723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101702" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATG</genome_strand>
        <mrna_strand>CTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338034" ref_strand="+" ref_description="SGN-E338034 [cTOE-14-B24]">
      <seq>ggactctctgcagagttgaagcttagctctgcctctgccataacaactggagctgtgctggggacatttgaagataataggtttaagtcagagtcaaagaaaccaacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101555" stop="102711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101855" g_stop="101903" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101985" g_stop="102179" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="244" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102265" g_stop="102411" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="391" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E338034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101855" e_stop="101903"/>
          <exon e_start="101985" e_stop="102179"/>
          <exon e_start="102265" e_stop="102411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTGGTATCCATTTTCATGATCTTCGCTAATTCATTGAATCATATTGAGAAACTAAACTTGGGTTGGTTTTCATGAATGTTCTAGGAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCA</genome_strand>
        <mrna_strand>GGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG.................................................................................GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274603" ref_strand="+" ref_description="SGN-E274603 [cLEN-11-D17]">
      <seq>caacattgaaatctttggatattcttggactgggtactggacctgagatagagaagaaaatcaagtatgcagcagatgtctgtgcaggtgttatactcggaagagagcttgtcaatgcacccgccaatgttcttacgcctgcggtacttgctgaagaggccaaaaagattgcgtccacttatagcgatgtcttttctgcaaacatcttggatgttgagcagtgcaaagaattgaaaatgggatcctatttagctgtcgctgcagcttctgcaaatcctgctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcggcttgtgagaatatgatcagtgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101739" stop="103201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102039" g_stop="102179" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102265" g_stop="102490" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="367" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="494" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102857" g_stop="102901" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="539" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E274603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102039" e_stop="102179"/>
          <exon e_start="102265" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTGGTTAGTGTTCTTTCAATGCATTTCCTTGTCCCTTTTATTAGCATGCCTATAACCATGTTATTAACATGCTGACTTTTCGCTGCAGCGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACA</genome_strand>
        <mrna_strand>CAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG.....................................................................................CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCGGCTTGTGAGAATATGATCAGTGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699673" ref_strand="+" ref_description="SGN-E699673 [FA10DE07]">
      <seq>ctcatttcatccatttgtgttataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaatagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtccctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctaccaattagaaccagtcatcatctgatggctaaaacatatgagggaagttatgtttaccattttataagaaaaaaaaacttatgaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102103" stop="105938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102403" g_stop="102490" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="215" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="311" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="389" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="450" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="638" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105424" g_stop="105638" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="854" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E699673" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102403" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGT-CCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGG-AGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTG</genome_strand>
        <mrna_strand>CTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACCAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAAGTTATG-TTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319369" ref_strand="+" ref_description="SGN-E319369 [cTOB-15-C22]">
      <seq>ataagcctagtagtggagaaataaaaaagaagatagccttggttggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102124" stop="104994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102424" g_stop="102490" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="194" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="290" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="368" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="429" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104674" g_stop="104694" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="450" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E319369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102424" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATG</genome_strand>
        <mrna_strand>ATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286643" ref_strand="+" ref_description="SGN-E286643 [cLES-12-H13]">
      <seq>ggaaagggattaacttttgacagtggtggctacaacatcaagactggacctggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggctaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagctgatttggcaacattaactggtgcttgagtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51995" stop="104997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102468" g_stop="102490" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102633" g_stop="102759" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="150" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="246" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="324" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="385" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="104674" g_stop="104697" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="409" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E286643" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102468" e_stop="102490"/>
          <exon e_start="102633" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGGATTAACTTTTGACAGGTAATGCCATCTTCTATAAGTTGGATAAATAGAAATTGATTTCTGACCTGGCTGCAGTGATATCGTTTCTTTTATTATTGCTACTTTTTTTTTTTAAACTCTTATGTTGTGATTGCTTGAACAATTCTTTTTATGTTCCCAGTGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACC</genome_strand>
        <mrna_strand>GGAAAGGGATTAACTTTTGACAG..............................................................................................................................................TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGATTTGGCAACATTAACTGGTGCTTGAGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725856" ref_strand="+" ref_description="SGN-E725856 [LA08CB03]">
      <seq>ggttgttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102361" stop="105111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102661" g_stop="102759" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="195" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="273" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="334" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104674" g_stop="104811" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="472" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E725856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102661" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACA</genome_strand>
        <mrna_strand>GGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716354" ref_strand="+" ref_description="SGN-E716354 [FB16DC08]">
      <seq>gttctattgagctaatgaagtttgacatgggaggggctgcagctgttttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagatttgcatcaagtttttatgaataaatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102365" stop="106005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102665" g_stop="102759" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="191" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="269" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="330" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="518" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105424" g_stop="105705" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="799" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E716354" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102665" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGG</genome_strand>
        <mrna_strand>GTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAG-ATTTGCATCAAGTTTTTATGAATAAATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548019" ref_strand="+" ref_description="SGN-E548019 [TUS-57-D24](-)">
      <seq>tgcagctgtttgggtgcagcaaaagctcttggtcagataaaacccgctggagtagaggtgcatttcattgttgcagcttgtgagaatatgatcagtgggacaggcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacacggatgctgagggtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttttgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctcttttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccccgggttttggtgtttcaactttggtggaatgggtgctgaagaactttacaaattagaaccagtcatcatttgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102402" stop="140629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102702" g_stop="102759" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102857" g_stop="102952" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="153" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="231" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="292" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="480" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105424" g_stop="105727" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="784" r_length="304" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105728" i_stop="108263" i_length="2536">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="108264" g_stop="108296" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="817" r_length="33" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E548019" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102702" e_stop="102759"/>
          <exon e_start="102857" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105727"/>
          <exon e_start="108264" e_stop="108296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAGGTGAGTCCTTTATCATCATTCAAGAAAAAACAAGTATTTACTCGAAGTGAGTGTATTCAATTATTCTCTTTTCTCCAAACTAATTACCATGCTGCAGGTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCTATTCATGCATGTCTGGTAGAGATCGTATTCACTGTGGTACCATAGTAGGTAAACTTGAAGGTGATTCTAAAGATCGACATTCTAAAATGAGTAGTGTTCATGACATCAACACGACTAACGTATATCCACCTTTATGTGTTAAGACATCGTTCTAAACACGTTCAATAAAATTTTCCAAATGAGGTGCTGTTGCATGACGTAACTTCAACTAACGTGTATTTGTCTCTTTGTTGTCTTCAAATCTTGAGTTCGTTTCTAAGTCATAGTATTGTTCCTTTAATTTTTGCTCTTAAATTTATGTTCTTATTTCTTATATTTAAATTGTCATATTATATTGTTATATAAATTGTTTAAAATATCTTTTTATTAAATTCGAAAAAAAAAATCCTTCTTATACTCAAATTTATCACTCACCCTTTAGCAAATTTTTAAGTACTAAATTTACGGGTCGCTTGGGAGGTCTATAATTATTTTTCTTGAATTTTTTCTCCTTAGGTTTCAAAGAAGTATCAATAAATAGAATCATCCGATTTCAACTTTTTTCTTAAGACCTATTTGCAATCAATTGTTTTACAGTCCGGTAGTAAATCAATTAGTTTCCAAGTTTTTTTCGAAATTAGTTATTCTATTTCATCATTTATAGCCTCTTTCCAAAAAATAAAATCATGTGAAGATAATGCTTCTTTCAACGTTAGTGGTCATCTTCAACATTAAACACATAAAATCAGGACCAAAATCTTTTTATACTCTAACTCTTTTACTTCTTCTTAACTCAAAATCATCAAATTCTTTATTTTTCAAAGTAGAAGTAGAAGAACTAGATAGCGACAAAATATTTTGTTCAATATTTTAACCCCCATTATTTTTAGAATCAAAATGAAATTTATTTTCATGAAAAATAGCATCACCCGATACTGTCATAGTATTATCTTCATAATTAAAAAATCTATAGGTTGTACTATTTGAAGCATAACTAAGAAAAACACAAGTAGTAACTTTCTTACCCGACTTTGTAATCATGGGATCCATTAGCCTCATAAAGACTAGACAACACTAAACCCTTAGTTTTATGAATTATTCCCAATGATCTAACAAAAGAATTAAACTCATTTGAGTCATATTCACGGCCTCTATCACTTCTATTTTTTTTATTTTTCTTCCAAACTGATTTTCAATCTCATGGAGATAAGTTTTGAAATTTTCAAAAGCATCACTTTTATTTTTCATCAAGTAAACATATGTAAACTTAGAAAAATTATCAATGTAAGTGATAAAATATATATTACCTTTACGAGTTAGAATCCCACCAAGTTCACAAATATGAATATAAACTGATTCTAACAAATAAGTTTTTTTTTTCAACTTGAAAATGAGGCCTTTTAGTGATTTTAGCTTTACTACAAGCCTCACATTTTTTAAAATTCTTTTTAACCATTGGGATTAATTCTAAACTATTCATGATTCCAACATAACGATCATTAATATGATGCCAAAAACTGGTAGAAGAAAGCACATAAACATAAGGAGAAGTTTTATTCATCTCAACATTCAACTTAAATATCCATCACATGCATACCTCTTCCCCTCAAAATACCTTTCTTCACTATTACATATTGATCAGATACAATAATTTGTTTAAGGCCTGCTTTATTAAGAAGAAAATTAGAAATCCATTTTTTTCTCATGGAAGAAGTATAAAGTAGAGTTCGGAGTCAAAAAGGCAAAAAAAAATTATCAAAAATTCTAAAAGGGAATATCAATTCTTTTTAGCCAAAAGGACAAAATCGCTCTTGACAAAGCCATTTTCTTCTGACAAAATTGATACCGTAACTTTTTTTTGTAATATCGCTGCATGCGTAGCGTTTTTTAAAAATAAATAAATAGATTTCTTTTTCCTATCTTTGCAGCAAGCCATCAATAGAGGCTGCCAGCTTTGTTTACCTCTTTGTAAATTTTTTTTTTTTGGATGAAATCGCTACCACAACAGAGATTTTTTTGGTGTTTGTTTTAAAAAATTAACATGTCAATTTTATCAGAAGAAAATCGTTCCGCCGGGAACGATTTTGTGCTTTTGATTTTAAAAAAAAATTGATGTACCCTTTTGCAATTTTTGACAATTTTTTTCCCTTTTGGCTTCCGAACATCTTTTAAAGTTAAAACCCTTCCTGAAGTAAAACACAATTCTACATCTCCTTTTCCAAGCACTTGAATAGTGTGAGCATCACCAAGCATGATAGTTTTGAGCTCCTCAAAATGAGTATATCTTTTAAACCAATCTTTATCATAACAGACATAACGGTTTGCACCAAAATCAACCTACCATCCATCAACATTCTCAACCATGTTTATGTCGATAATCGCCCGCAACAACAAGGTTCTTCCGGAAAAGTTTTATAAATATAAATTTGGAAGCTAAATTTATTTAAAAAAAAATTACCAAGCCCAAACCTTAAAAACAAAAAAAACCAAGAAAAAAAAAACAAAAAAAAA</genome_strand>
        <mrna_strand>TGCAGCTG-TTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG.................................................................................................GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTTTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTTTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCCCGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTTTACAAATTAGAACCAGTCATCATTTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694122" ref_strand="+" ref_description="SGN-E694122 [LH_Ea03B16](-)">
      <seq>gcatgaggcctggagacattatcactgcttcaaatgggaagacaattgaggttaacaacccggatgctgagggtagactcccccttgctgatgcgttggtatatccctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacccctagcgatgccctagctaaggaggtggttgaagcttttgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactttatgaaatcaggagtggctgatatggtgaacccgggaggtcgtccaggtggtgcgataactgctgcttttttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtttggagcgataaaaagaaaaaccccccgggatttggtgtttcaactttggtggaatgggtgctgaagaactttacaaattagagccagtcatcatttgatggctaaaacccctgcgggagttatgttaaccattttataagaaaaaaaacttatgagggagttgtaatttcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaatgggggtgaaaatggtggaaaagaaaagcgccctacttaaaggagtattgatttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102603" stop="131262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102903" g_stop="102952" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103659" g_stop="103736" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="189" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="377" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105424" g_stop="105761" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="714" r_length="337" r_score="0.899"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105762" i_stop="108460" i_length="2699">
            <donor d_prob="0.000" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="108461" g_stop="108488" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="742" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E694122" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102903" e_stop="102952"/>
          <exon e_start="103659" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105761"/>
          <exon e_start="108461" e_stop="108488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAGGTAAGCTCATTTTTGGGGCTCTTAGGGGTTTGATTTAATTGGGTCTCTCCTTCACCCCACTTTCACAACAAGCTCTATTTGAAGATTGTTCATCAACCTTCCTATTCAATCTGTTTTCTTTTGTGGTATTCGTGATTGGTTGAGGTGTTTAGAACTGAAGATAATACTGAAACACCTGTTTTATAAGTTCTCTAGATTTTTTGTATAACTCAAGTTGTTTCCTTATTTTCTTTTTGCTGAAAGATTGTCACTTTTCTGCATAATTGAGGTATTTTAACTTTTAGAGTGAGTGAAAAGTGTCCCCTATCTATTTGTCAAAAAAAAAATGTCCCTTATCTGTCAATGATTAAGTTATCATGTATCAATCATGCTTCTCAGTGGCCAGACACATGGCATATGTGGAAGTGCACTAGCTTCAGGAATGCATCTTATTCCCTAGACTACAAAAACATTGAAATACAACCTTTAAAAAGTGGATGATTCAAACTTCCATCTTGACATTTTCACAGTAGATACATTGCACTTGGGTAGATAGTTTATATAGGATAGGATTTTCTTTTATAGTTTATTTTTGATAGGCTATCATTTATTTGATTGTTTACCTATTAGTTTAGGACCAATATGATGCAAGCCTTGGTGCTTATTTTCTGTTTTGCTTTATCTGACTGTTTCGTGGTTACTGTTGGTGCCTTCATATTTATGGTAGGTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGA-AAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAG-GCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCTATTCATGCATGTCTGGTAGAGATCGTATTCACTGTGGTACCATAGTAGGTAAACTTGAAGGTGATTCTAAAGATCGACATTCTAAAATGAGTAGTGTTCATGACATCAACACGACTAACGTATATCCACCTTTATGTGTTAAGACATCGTTCTAAACACGTTCAATAAAATTTTCCAAATGAGGTGCTGTTGCATGACGTAACTTCAACTAACGTGTATTTGTCTCTTTGTTGTCTTCAAATCTTGAGTTCGTTTCTAAGTCATAGTATTGTTCCTTTAATTTTTGCTCTTAAATTTATGTTCTTATTTCTTATATTTAAATTGTCATATTATATTGTTATATAAATTGTTTAAAATATCTTTTTATTAAATTCGAAAAAAAAAATCCTTCTTATACTCAAATTTATCACTCACCCTTTAGCAAATTTTTAAGTACTAAATTTACGGGTCGCTTGGGAGGTCTATAATTATTTTTCTTGAATTTTTTCTCCTTAGGTTTCAAAGAAGTATCAATAAATAGAATCATCCGATTTCAACTTTTTTCTTAAGACCTATTTGCAATCAATTGTTTTACAGTCCGGTAGTAAATCAATTAGTTTCCAAGTTTTTTTCGAAATTAGTTATTCTATTTCATCATTTATAGCCTCTTTCCAAAAAATAAAATCATGTGAAGATAATGCTTCTTTCAACGTTAGTGGTCATCTTCAACATTAAACACATAAAATCAGGACCAAAATCTTTTTATACTCTAACTCTTTTACTTCTTCTTAACTCAAAATCATCAAATTCTTTATTTTTCAAAGTAGAAGTAGAAGAACTAGATAGCGACAAAATATTTTGTTCAATATTTTAACCCCCATTATTTTTAGAATCAAAATGAAATTTATTTTCATGAAAAATAGCATCACCCGATACTGTCATAGTATTATCTTCATAATTAAAAAATCTATAGGTTGTACTATTTGAAGCATAACTAAGAAAAACACAAGTAGTAACTTTCTTACCCGACTTTGTAATCATGGGATCCATTAGCCTCATAAAGACTAGACAACACTAAACCCTTAGTTTTATGAATTATTCCCAATGATCTAACAAAAGAATTAAACTCATTTGAGTCATATTCACGGCCTCTATCACTTCTATTTTTTTTATTTTTCTTCCAAACTGATTTTCAATCTCATGGAGATAAGTTTTGAAATTTTCAAAAGCATCACTTTTATTTTTCATCAAGTAAACATATGTAAACTTAGAAAAATTATCAATGTAAGTGATAAAATATATATTACCTTTACGAGTTAGAATCCCACCAAGTTCACAAATATGAATATAAACTGATTCTAACAAATAAGTTTTTTTTTTCAACTTGAAAATGAGGCCTTTTAGTGATTTTAGCTTTACTACAAGCCTCACATTTTTTAAAATTCTTTTTAACCATTGGGATTAATTCTAAACTATTCATGATTCCAACATAACGATCATTAATATGATGCCAAAAACTGGTAGAAGAAAGCACATAAACATAAGGAGAAGTTTTATTCATCTCAACATTCAACTTAAATATCCATCACATGCATACCTCTTCCCCTCAAAATACCTTTCTTCACTATTACATATTGATCAGATACAATAATTTGTTTAAGGCCTGCTTTATTAAGAAGAAAATTAGAAATCCATTTTTTTCTCATGGAAGAAGTATAAAGTAGAGTTCGGAGTCAAAAAGGCAAAAAAAAATTATCAAAAATTCTAAAAGGGAATATCAATTCTTTTTAGCCAAAAGGACAAAATCGCTCTTGACAAAGCCATTTTCTTCTGACAAAATTGATACCGTAACTTTTTTTTGTAATATCGCTGCATGCGTAGCGTTTTTTAAAAATAAATAAATAGATTTCTTTTTCCTATCTTTGCAGCAAGCCATCAATAGAGGCTGCCAGCTTTGTTTACCTCTTTGTAAATTTTTTTTTTTTGGATGAAATCGCTACCACAACAGAGATTTTTTTGGTGTTTGTTTTAAAAAATTAACATGTCAATTTTATCAGAAGAAAATCGTTCCGCCGGGAACGATTTTGTGCTTTTGATTTTAAAAAAAAATTGATGTACCCTTTTGCAATTTTTGACAATTTTTTTCCCTTTTGGCTTCCGAACATCTTTTAAAGTTAAAACCCTTCCTGAAGTAAAACACAATTCTACATCTCCTTTTCCAAGCACTTGAATAGTGTGAGCATCACCAAGCATGATAGTTTTGAGCTCCTCAAAATGAGTATATCTTTTAAACCAATCTTTATCATAACAGACATAACGGTTTGCACCAAAATCAACCTACCATCCATCAACATTCTCAACCATGTTTATGTCGATAATCGCCCGCAACAACAAGGTTCTTCCGGAAAAGTTTTATAAATATAAATTTGGAAGCTAAATTTATTTAAAAAAAAATTACCAAGCCCAAACCTTAAAAACAAAAAAAACCAAGAAAAAAAAAACAAAAAAAAATTTAAAAATTTTTTTTAAAGAAAAAATTTTTTTATCCTTTAAACAAAAACAATATTTCCCAATGAAAATTTAAAATTCCTCCTTGGTTTTTAATTAAAATACCCCCCCAAAAAAAAAATAAAAAGGGTATCCCTTAAAACCCAAAAAAAAAAAAAAACCCCCCCAAAAAAAAAAAAAAAAAAAATAAATAAA</genome_strand>
        <mrna_strand>GCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACAACCCGGATGCTGAGGGTAGACTCCCCCTTGCTGATGCGTTGGTATATCCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACCCCTAGCGATGCCCTAGCTAAGGAGGTGGTTGAAGCTTTTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTTTATGAAATCAGGAGTGGCTGATATGGTGAACCCGGGAGGTCGTCCAGGTGGTGCGATAACTGCTGCTTTTTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTTTGGAGCGATAAAAAGAAAAACCCCCCGGGATTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTTTACAAATTAGAGCCAGTCATCATTTGATGGCTAAAACCCCTGCGGGAGTTATG-TTAACCATTTTATAAG-AAAAAAAACTTATGAGGGAGTTGTAATTTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAATGGGGGTGAAAATGGTGGAAAAGAAAAGCGCCCTACTTAAAGGAG-TATTGATTTACAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713438" ref_strand="+" ref_description="SGN-E713438 [FB08CE08]">
      <seq>gtagactcacacttgctgatgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103381" stop="106027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103681" g_stop="103736" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="117" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="305" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105424" g_stop="105734" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="616" r_length="311" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E713438" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103681" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTA</genome_strand>
        <mrna_strand>GTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256468" ref_strand="-" ref_description="SGN-E256468 [cLEG-38-H1]">
      <seq>tgcgttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103400" stop="131266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103700" g_stop="103736" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="98" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="286" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105424" g_stop="105712" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="575" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E256468" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256468" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103700" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAA</genome_strand>
        <mrna_strand>TGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257965" ref_strand="-" ref_description="SGN-E257965 [cLEG-48-M14]">
      <seq>ttggtatatgcctgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctctggggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103404" stop="131266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103704" g_stop="103736" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="94" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="282" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105424" g_stop="105712" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="571" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E257965" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257965" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103704" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTATATGCCTGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAA</genome_strand>
        <mrna_strand>TTGGTATATGCCTGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTGGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252952" ref_strand="-" ref_description="SGN-E252952 [cLEG-25-I2]">
      <seq>tgtaaccaaggtgtagaaaagatagttgatttggcaacattaactggtgcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103416" stop="106027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103716" g_stop="103736" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104247" g_stop="104307" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="82" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="270" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105424" g_stop="105732" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="579" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E252952" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252952" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="103716" e_stop="103736"/>
          <exon e_start="104247" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCAAGGTGTAGAAAAGGTATTAATTGAACATTATAATAGTGCATCTGTTGCTTTCGGACATCACTTGACAATGTTTACCATCTAATATGTTTTCTTTGCTTTCCCCTCCCACTTTACACCCCAAAAGTGAAATGTTTCCTTTGAATACATAATTGGAAACATATGAACTTCCATTGGTCAATGTTCTTGTAGCTATCAATATGATTGATCAGTTAAATGCTTAAAATAGACTTGACTATAAAGCCACGTATACTATGAAAATTACAAGCAATAAGACGCGAATTAGAAATAAGATTATCTTTTAACTATAACTTTATTTCTGCAATAACCAATACCTACCAAAATTAGATGTTGTAGCTATCAGAAGAAGTTCCCAGATTTCCAACCTAAGATGTAATAAAAAATGTTGTGAGATCCTCTGCTTTGATCTCCAAAGCTTCGCTCTTGCTAAGAAAGGTTGTACAGTAGTTGGATGTTTACTCAATACCTTGGCATGTGTTAAATGACATGTTTTATTGTTATGCAGATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCAC</genome_strand>
        <mrna_strand>TGTAACCAAGGTGTAGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225366" ref_strand="+" ref_description="SGN-E225366 [cLEL-17-D24](-)">
      <seq>gcttgtgtggttgctcttgggccttcaattgctggtatttttacacctagcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatgcaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttacccttttataagagaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatccagtttttatgaataaatttggggtgaaaatggtggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103974" stop="106027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104274" g_stop="104307" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="222" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105424" g_stop="105737" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="536" r_length="314" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E225366" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104274" e_stop="104307"/>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTGGTATATTTGCTTGTGCCTCTTTTTTTTCTCTTCTTTTTTGGTATATGTGATGGTTGAATAATGGTGAACATTTAGCTGAGGGTCTATCGGAAACAACCTCTCTGCTTTACAATGGTAGGGGTAAGGTCTGTGTACATCCTACCCTTCCCAGCCCCCCTTGTGGGATTGCACTGGGTATGTTGTTGTTGTGATGATCAGTTTATTATTTAATGTTCTAATTTATACATATATTACTTTGATTGCACTAAAATAATTGTGACACCAATTGCACGTGTTGGATGACGAAAGATGCTACGGTGAATCTCTGACTGATATATAAACTATGAATTTCTAATGTACTGGAACTTTATTGGATTTCTTGTACAGGTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTA</genome_strand>
        <mrna_strand>GCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG..............................................................................................................................................................................................................................................................................................................................................................................GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGCAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCCTTTTATAAGAGAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCCAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261773" ref_strand="-" ref_description="SGN-E261773 [cLEG-61-C3]">
      <seq>tcaattgctggtatttttacacctagcgatgccctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104369" stop="131266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104674" g_stop="104861" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="198" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105712" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="487" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E261773" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261773" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104674" e_stop="104861"/>
          <exon e_start="105424" e_stop="105712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAA</genome_strand>
        <mrna_strand>GTATTTTTACACCTAGCGATGCCCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215239" ref_strand="+" ref_description="SGN-E215239 [cLEL-20-M11](-)">
      <seq>gcgatgacctagctaaggaggtggttgcagcttctgaggtaagcggtgaaaaactatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccccgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104389" stop="108788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104689" g_stop="104861" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105737" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="487" r_length="314" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E215239" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104689" e_stop="104861"/>
          <exon e_start="105424" e_stop="105737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTA</genome_strand>
        <mrna_strand>GCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCCCGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224209" ref_strand="+" ref_description="SGN-E224209 [cLEL-19-D14](-)">
      <seq>ctagctaagaaggtggttgcagcttttaaggtaagcggtgaaaaactatgaaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacggaaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104397" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104697" g_stop="104861" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105713" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="455" r_length="290" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224209" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104697" e_stop="104861"/>
          <exon e_start="105424" e_stop="105713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAAT</genome_strand>
        <mrna_strand>CTAGCTAAGAAGGTGGTTGCAGCTTTTAAGGTAAGCGGTGAAAAACTATGAAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGAAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230689" ref_strand="+" ref_description="SGN-E230689 [cLEL-35-I17](-)">
      <seq>actatggaggttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104441" stop="131269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104741" g_stop="104861" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105726" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="424" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E230689" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104741" e_stop="104861"/>
          <exon e_start="105424" e_stop="105726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAA</genome_strand>
        <mrna_strand>ACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234272" ref_strand="+" ref_description="SGN-E234272 [cLEL-8-E21](-)">
      <seq>ttgccgatggaggatagctactgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggcactagtagacttagatattgatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104451" stop="140939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104751" g_stop="104861" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105771" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="459" r_length="348" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E234272" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104751" e_stop="104861"/>
          <exon e_start="105424" e_stop="105771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATT</genome_strand>
        <mrna_strand>TTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230617" ref_strand="+" ref_description="SGN-E230617 [cLEL-35-I17](-)">
      <seq>gctactgggactctatgaatcaggagtggctgatatggtgaacacgggaggtcgtaccaggtggtgcgataaccgcctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaccaaccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104467" stop="106009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104767" g_stop="104861" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105726" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="399" r_length="303" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E230617" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104767" e_stop="104861"/>
          <exon e_start="105424" e_stop="105726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGT-CCAGGTGGTGCGATAACCG-CTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAA</genome_strand>
        <mrna_strand>GCTACTGGGACTCTATG-AATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTACCAGGTGGTGCGATAACCGCCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGACCAACCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224046" ref_strand="+" ref_description="SGN-E224046 [cLEL-19-D14](-)">
      <seq>ctgggactctatgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctaaagcagtttgttaacgagaaggtccaatggatgcatatagacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104471" stop="108780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104771" g_stop="104861" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105713" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="381" r_length="290" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E224046" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104771" e_stop="104861"/>
          <exon e_start="105424" e_stop="105713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAAT</genome_strand>
        <mrna_strand>CTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTAAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATAGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251791" ref_strand="-" ref_description="SGN-E251791 [cLEG-15-L24]">
      <seq>atgaaatcaggagtggctgatatggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggcactagtagacttagatattgatttataaaatgcctaatattgccatcttacatatggaatttattacccctatcctaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104481" stop="131275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104781" g_stop="104861" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105806" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="464" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105807" i_stop="108276" i_length="2470">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108277" g_stop="108306" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="494" r_length="30" r_score="0.767"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E251791" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251791" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104781" e_stop="104861"/>
          <exon e_start="105424" e_stop="105806"/>
          <exon e_start="108277" e_stop="108306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCTATTCATGCATGTCTGGTAGAGATCGTATTCACTGTGGTACCATAGTAGGTAAACTTGAAGGTGATTCTAAAGATCGACATTCTAAAATGAGTAGTGTTCATGACATCAACACGACTAACGTATATCCACCTTTATGTGTTAAGACATCGTTCTAAACACGTTCAATAAAATTTTCCAAATGAGGTGCTGTTGCATGACGTAACTTCAACTAACGTGTATTTGTCTCTTTGTTGTCTTCAAATCTTGAGTTCGTTTCTAAGTCATAGTATTGTTCCTTTAATTTTTGCTCTTAAATTTATGTTCTTATTTCTTATATTTAAATTGTCATATTATATTGTTATATAAATTGTTTAAAATATCTTTTTATTAAATTCGAAAAAAAAAATCCTTCTTATACTCAAATTTATCACTCACCCTTTAGCAAATTTTTAAGTACTAAATTTACGGGTCGCTTGGGAGGTCTATAATTATTTTTCTTGAATTTTTTCTCCTTAGGTTTCAAAGAAGTATCAATAAATAGAATCATCCGATTTCAACTTTTTTCTTAAGACCTATTTGCAATCAATTGTTTTACAGTCCGGTAGTAAATCAATTAGTTTCCAAGTTTTTTTCGAAATTAGTTATTCTATTTCATCATTTATAGCCTCTTTCCAAAAAATAAAATCATGTGAAGATAATGCTTCTTTCAACGTTAGTGGTCATCTTCAACATTAAACACATAAAATCAGGACCAAAATCTTTTTATACTCTAACTCTTTTACTTCTTCTTAACTCAAAATCATCAAATTCTTTATTTTTCAAAGTAGAAGTAGAAGAACTAGATAGCGACAAAATATTTTGTTCAATATTTTAACCCCCATTATTTTTAGAATCAAAATGAAATTTATTTTCATGAAAAATAGCATCACCCGATACTGTCATAGTATTATCTTCATAATTAAAAAATCTATAGGTTGTACTATTTGAAGCATAACTAAGAAAAACACAAGTAGTAACTTTCTTACCCGACTTTGTAATCATGGGATCCATTAGCCTCATAAAGACTAGACAACACTAAACCCTTAGTTTTATGAATTATTCCCAATGATCTAACAAAAGAATTAAACTCATTTGAGTCATATTCACGGCCTCTATCACTTCTATTTTTTTTATTTTTCTTCCAAACTGATTTTCAATCTCATGGAGATAAGTTTTGAAATTTTCAAAAGCATCACTTTTATTTTTCATCAAGTAAACATATGTAAACTTAGAAAAATTATCAATGTAAGTGATAAAATATATATTACCTTTACGAGTTAGAATCCCACCAAGTTCACAAATATGAATATAAACTGATTCTAACAAATAAGTTTTTTTTTTCAACTTGAAAATGAGGCCTTTTAGTGATTTTAGCTTTACTACAAGCCTCACATTTTTTAAAATTCTTTTTAACCATTGGGATTAATTCTAAACTATTCATGATTCCAACATAACGATCATTAATATGATGCCAAAAACTGGTAGAAGAAAGCACATAAACATAAGGAGAAGTTTTATTCATCTCAACATTCAACTTAAATATCCATCACATGCATACCTCTTCCCCTCAAAATACCTTTCTTCACTATTACATATTGATCAGATACAATAATTTGTTTAAGGCCTGCTTTATTAAGAAGAAAATTAGAAATCCATTTTTTTCTCATGGAAGAAGTATAAAGTAGAGTTCGGAGTCAAAAAGGCAAAAAAAAATTATCAAAAATTCTAAAAGGGAATATCAATTCTTTTTAGCCAAAAGGACAAAATCGCTCTTGACAAAGCCATTTTCTTCTGACAAAATTGATACCGTAACTTTTTTTTGTAATATCGCTGCATGCGTAGCGTTTTTTAAAAATAAATAAATAGATTTCTTTTTCCTATCTTTGCAGCAAGCCATCAATAGAGGCTGCCAGCTTTGTTTACCTCTTTGTAAATTTTTTTTTTTTGGATGAAATCGCTACCACAACAGAGATTTTTTTGGTGTTTGTTTTAAAAAATTAACATGTCAATTTTATCAGAAGAAAATCGTTCCGCCGGGAACGATTTTGTGCTTTTGATTTTAAAAAAAAATTGATGTACCCTTTTGCAATTTTTGACAATTTTTTTCCCTTTTGGCTTCCGAACATCTTTTAAAGTTAAAACCCTTCCTGAAGTAAAACACAATTCTACATCTCCTTTTCCAAGCACTTGAATAGTGTGAGCATCACCAAGCATGATAGTTTTGAGCTCCTCAAAATGAGTATATCTTTTAAACCAATCTTTATCATAACAGACATAACGGTTTGCACCAAAATCAACCTACCATCCATCAACATTCTCAACCATGTTTATGTCGATAATCGCCCGCAACAACAAGGTTCTTCCGGAAAAGTTTTATAAATATAAATTTGGAAGCTAAATTTATTTAAAAAAAAATTACCAAGCCCAAACCTTAAAAACAAAAAAAACCAAGAAAAAAAAAACAAAAAAAAATTTAAAAATT</genome_strand>
        <mrna_strand>ATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234022" ref_strand="+" ref_description="SGN-E234022 [cLEL-8-E21](-)">
      <seq>tggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggcactagtagacttagatattgatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104503" stop="140939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104803" g_stop="104861" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105771" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="407" r_length="348" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E234022" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104803" e_stop="104861"/>
          <exon e_start="105424" e_stop="105771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATT</genome_strand>
        <mrna_strand>TGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225246" ref_strand="+" ref_description="SGN-E225246 [cLEL-17-D24](-)">
      <seq>tggtgaacacgggaggtcgtccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttgcccttttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104503" stop="108779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104803" g_stop="104861" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105737" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="373" r_length="314" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E225246" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104803" e_stop="104861"/>
          <exon e_start="105424" e_stop="105737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTA</genome_strand>
        <mrna_strand>TGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTGCCCTTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221947" ref_strand="+" ref_description="SGN-E221947 [cLEL-10-I22](-)">
      <seq>tccaggtggtgcgataaccgctgctctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccacgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggcactagtagacttagatattgatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104522" stop="140939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104822" g_stop="104861" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105771" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="388" r_length="348" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E221947" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104822" e_stop="104861"/>
          <exon e_start="105424" e_stop="105771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATT</genome_strand>
        <mrna_strand>TCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228632" ref_strand="+" ref_description="SGN-E228632 [cLEL-29-A4](-)">
      <seq>tctcttcctgaagcagtttgttaacgagaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgcccccgggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttacccttttataagaaaaaaaaacttatggaaagttgttatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgacataaatttggggtgaaaatggtggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104546" stop="106027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104846" g_stop="104861" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105424" g_stop="105735" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="330" r_length="314" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228632" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104846" e_stop="104861"/>
          <exon e_start="105424" e_stop="105735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTGAAGCAGGTAATCATCTGATCACTCTTAATAGTAATGTGTAATTATTTTAGTCATATCGAAATTCACTATGTTATCCCATGAAAATTCTGTCTTGATGCCTTCTTACGGGCAGACCTATGTTGCTCAGTCTCTACAAAAATGCTTCTACATCGAATCCTCCAAAATTTATACTTAAATATGTTAGGTGAAAGTTAGAAGTATAGAATTGCCAAAAGAATTTAAAAAAGAGACGTTCTTTTTGAAACAAACTATAAACAAAAGTAAAACAAACAAATCGAAACTGAGGGAGTTACTACTTTTGGAGGAACAAAAATGATCTGGACTTTCTGTTCTAGCAGCAATGCAAGCTTATGTTTAGTAGAGCCAAAAGTTTCTTCTTACATCATAAACAGAATAAAAGTGACGAGGACGGGAACTTAAAAACATTATTGAAAGGCTAAGGGCCTTCGTTTACAGCTACCAATTATTCGTTACTAGGATCTCTCTGGCCCTCTCCTTTTATAGCGGGTTTTATAAAAGTAGAAATCTTTGAGACGAGAAACTTGACATAATTTTATTCATTTTGCAGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACG-CCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGA-ATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAG</genome_strand>
        <mrna_strand>TCTCTTCCTGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCCCCGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCCTTTTATAAGAAAAAAAAACTTATGGAAAGTTGTTATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGACATAAATTTGGGGTGAAAATGGTGGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218577" ref_strand="+" ref_description="SGN-E218577 [cLEL-18-G22](-)">
      <seq>agtttgttaacgaaaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccaacggttttggtgtttcaactttggtggaatgggtgctgaagaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttaccattttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggcactagtagacttagatattgatttacaaaatgcctaatattgccatcttaaaaaaagnaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="105122" stop="106089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105422" g_stop="105781" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="378"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E218577" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105422" e_stop="105781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTAC</genome_strand>
        <mrna_strand>AGTTTGTTAACGAAAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCAACGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTACAAAATGCCTAATATTGCCATCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E221537" ref_strand="+" ref_description="SGN-E221537 [cLEL-10-I22](-)">
      <seq>agtttgttaacgaaaaggtccaatggatgcatatcgacttagctggtcctgtctggagtgataaaaagaaaaacgccccgggttttggtgtttcaactttggtggaatgggtgctgaaaaactctacaaattagaaccagtcatcatctgatggctaaaacatatgagggagttatgttttacccttttataagaaaaaaaaacttatgaaaagttgtaatctcaagggacttatggatgtttgagaaaagaatttgcatcaagtttttatgaataaatttggggtgaaaatggtggaaaagaaaaggccctagtagacttagatattgatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="105122" stop="140939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105422" g_stop="105771" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E221537" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105422" e_stop="105771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATT</genome_strand>
        <mrna_strand>AGTTTGTTAACGAAAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCCCGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAAAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCCTTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCCCTAGTAGACTTAGATATTGATTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="113730" stop="112323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113430" g_stop="112623" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113430" e_stop="112623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGACTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="114389" stop="113141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114089" g_stop="113441" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114089" e_stop="113441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="114388" stop="113404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114088" g_stop="113704" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114088" e_stop="113704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228446" ref_strand="+" ref_description="SGN-E228446 [cLED-3-K11]">
      <seq>aaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120488" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120188" g_stop="120064" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="420" r_length="295" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118906" i_length="764">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118905" g_stop="118890" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="436" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118889" i_stop="117415" i_length="1475">
            <donor d_prob="0.644" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117414" g_stop="117375" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="476" r_length="40" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E228446" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120188" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118905" e_stop="118890"/>
          <exon e_start="117414" e_stop="117375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACTTTTTACTACATTTTTCACTATTAATTCTTATTTTTAACAAAGTACAAAAAAATGTTAAAGTGGATAAAATATTAATTTTTAAAAAAATTATACTTTCTATTATAAATTAAAAAAAATTCTATAAAAATTTTAACACATAATTTAATCTTGACAAAAATTTGGGACCCCCAAATTAGGCAAAGGCCTTAAATTCCAAAGCATTGAGCCGCCGTGAAAGTAGTGATCAAACCACTAGTCCGCGAAATAAACTTCATCCAAGTATGACATTTAATTCATATTTATATGTTAGAACTACTTGTTGAAATTTAATTCAAAAATACCACTTGAAGTGTGAGCAGGTACTTTTAAGCGAATCCCCAAATTAAACAGAGCTTCAAACGAATCCATAAGATAGACAATATTTTTACGGTCTTCTACTATGATCCCCAGTTCATATCCGAACATCTCAATACTTCGGTGGGCAAGTACGAATAGTGTTGAAGATGAAGGAAACTGACAATCGGAACATGTGAAAATAACAAGTCCAACGCAGTTGACTGACTGGTCAACAACAAGTGTTGATGAAGACGGAAGCTGAAGATTGGAACATGTTGAAGAAACAGGTCCAACGAATCTGACTAGTGAGTTACAACATTAATAAAGAATTAGAGTCGTACTAAAATTAGACTACCTATGTTAATTAGAATTATATTTCGTTTAGAATTATTTTTATAATTAGGATTATAGTACAACTAGGATTAGATTATTTATAGTTGCATTATTATTATTATTATTACTATAGTAGTGATAAGTATTGTAGTTTGACTCTAAGTATAGTTAACTTAGGACTCTACAATTCTCTCCTATATAAGGAGTATGTTATTAACATTATTATTTATCAATAACATCATTATTGATCAATACGATCAATACTACAAATATTGATCAACATATCAATACTATCGATATTGATCAGCATATCAATATATCAATATTGATCAACCTATCAATATTGATCAGTACTATTAACCTATCAATAGATCAATACATTCCTTGATTTATCTACGTGAGATTTTTACACGGTGTCGGAGCTTAAAGCTCTTCCGCTCTCTGAGTATTGATAAAAAATGAAAAAACACACACATTGCAATGACCTCTTCTACCAAAAACCATGTCAATCTCCTTACTTCACCAAATAATTATCGCTTGCTCCATTAAATTTAAGTCAGCAAACTACCTCATAAAGAGGAGACACATATCCCAATTGATTTATATCACAGAGTATGAACCAAGTAAAAGTAGTTAATCTACTCGATAGACTGCTAGGGGAGTTGTAGCGACTAAGAAGAATGCAAAAGCTAGTGACACCATTGATGATCAAAAGGAGAAAAATGTGTTACTAAGGAGTTGGATCTCAAACACCTTGATCGAAGAAAGCACGCAACTAATTGTGGGTTACTCATATGCCAAAGAGATGTGGGAATACTATAAAAAAAACTTATATTCAAAAAAAAAAAAAGAGAGAA</genome_strand>
        <mrna_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224282" ref_strand="+" ref_description="SGN-E224282 [cLEL-19-D11](-)">
      <seq>ttgggacctggtaatggcggtgcaataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatccattcagtagctggccccgtatggttagattaaaaaaaaaacgcctggggttatggtggtacaactctgggggaatgggtcttcaggaactagtcaagatgtttgtggctaagcatatgagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgggtttttaaatgaataaaatgcctaaatataattgcccctttaaaaaaataaatactccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120414" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120114" g_stop="120064" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119702" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="316" r_length="265" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119701" i_stop="118800" i_length="902">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118799" g_stop="118765" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="351" r_length="35" r_score="0.686"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E224282" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120114" e_stop="120064"/>
          <exon e_start="119964" e_stop="119702"/>
          <exon e_start="118799" e_stop="118765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGAC-GTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTT-GTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACTTTTTACTACATTTTTCACTATTAATTCTTATTTTTAACAAAGTACAAAAAAATGTTAAAGTGGATAAAATATTAATTTTTAAAAAAATTATACTTTCTATTATAAATTAAAAAAA</genome_strand>
        <mrna_strand>TTGGGACCTGGTAATGGCGGTGCAATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCCATTCAGTAGCTGGCCCCGTATGGTTAGATTAAAAAAAAAACGCCTGGGGTTATGGTGGTACAACTCTGGGGGAATGGGTCTTCAGGAACTAGTCAAGATGTTTGTGGCTAAGCATATGAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGGGTTTTTAAATGAATAAAATGCCTAAATATAATTGCCCCTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATAAATACTCCCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327576" ref_strand="-" ref_description="SGN-E327576 [cTOC-20-I10]">
      <seq>agtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttttagatgaataaaatgcctaaataaaattgcccctttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattccctctagtatcgtaacttggagatgaaagagatatatatttgttttactgcttgatgattttgttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120447" stop="85512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120147" g_stop="120064" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119568" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="481" r_length="397" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119567" i_stop="118920" i_length="648">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118919" g_stop="118880" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="520" r_length="39" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E327576" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="120147" e_stop="120064"/>
          <exon e_start="119964" e_stop="119568"/>
          <exon e_start="118919" e_stop="118880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACT</genome_strand>
        <mrna_strand>AGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTTTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCCCTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGGAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACCA-GACTAGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227649" ref_strand="+" ref_description="SGN-E227649 [cLEL-30-O13](-)">
      <seq>aggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcccccataaaattgccactttaccttttggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120518" stop="96464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120218" g_stop="120064" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="432" r_length="277" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118906" i_length="782">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118905" g_stop="118893" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="445" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E227649" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120218" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118905" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>AGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCCCCATAAAATTGCCACTTTACCTTTTGGAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222160" ref_strand="+" ref_description="SGN-E222160 [cLEL-16-B17](-)">
      <seq>caagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120497" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120197" g_stop="120064" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="411" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118923" i_length="765">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118922" g_stop="118893" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="441" r_length="30" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E222160" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120197" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118922" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>CAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCCAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225251" ref_strand="+" ref_description="SGN-E225251 [cLEL-17-E14](-)">
      <seq>agtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120495" stop="96462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120195" g_stop="120064" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="409" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118893" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="427" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E225251" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120195" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>AGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226641" ref_strand="+" ref_description="SGN-E226641 [cLEL-26-A24](-)">
      <seq>aaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120488" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120188" g_stop="120064" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="402" r_length="277" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118912" i_length="776">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118893" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="421" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E226641" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120188" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118911" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>AAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215308" ref_strand="+" ref_description="SGN-E215308 [cLEL-20-I3](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120474" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120174" g_stop="120064" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="406" r_length="295" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118911" i_length="759">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118893" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="424" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E215308" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120174" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118910" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215404" ref_strand="+" ref_description="SGN-E215404 [cLEL-20-I3](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120474" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120174" g_stop="120064" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="406" r_length="295" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118911" i_length="759">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118893" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="424" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E215404" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120174" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118910" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226782" ref_strand="+" ref_description="SGN-E226782 [cLEL-26-P16](-)">
      <seq>tgggagagtatgaaatcaggagtggctgattatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120453" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120153" g_stop="120064" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="386" r_length="295" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118920" i_length="750">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118919" g_stop="118893" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="413" r_length="27" r_score="0.741"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E226782" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120153" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118919" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAGTATGAAATCAGGTGTGGCTGA-TATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>TGGGAGAGTATGAAATCAGGAGTGGCTGATTATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220898" ref_strand="+" ref_description="SGN-E220898 [cLEL-22-A7](-)">
      <seq>tgggagagtataaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120453" stop="96462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120153" g_stop="120064" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119669" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="386" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119668" i_stop="118912" i_length="757">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118893" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="405" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E220898" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120153" e_stop="120064"/>
          <exon e_start="119964" e_stop="119669"/>
          <exon e_start="118911" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>TGGGAGAGTATAAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224690" ref_strand="+" ref_description="SGN-E224690 [cLEL-27-J8](-)">
      <seq>aaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120441" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120141" g_stop="120064" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="373" r_length="295" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118920" i_length="750">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118919" g_stop="118893" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="400" r_length="27" r_score="0.741"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E224690" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120141" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118919" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223881" ref_strand="+" ref_description="SGN-E223881 [cLEL-19-D11](-)">
      <seq>ctgatatgattaacttgggacctggtaatggcggtgctataagtggggctctcttcctcaaacaatttgttgacgaaaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccccttttaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120428" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120128" g_stop="120064" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119704" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="326" r_length="261" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119703" i_stop="118930" i_length="774">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118929" g_stop="118893" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="363" r_length="37" r_score="0.649"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E223881" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120128" e_stop="120064"/>
          <exon e_start="119964" e_stop="119704"/>
          <exon e_start="118929" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>CTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAAGTGGGGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAAAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCCCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224614" ref_strand="+" ref_description="SGN-E224614 [cLEL-27-J8](-)">
      <seq>cctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccccgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120408" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120108" g_stop="120064" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="340" r_length="295" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118920" i_length="750">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118919" g_stop="118893" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="367" r_length="27" r_score="0.741"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E224614" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120108" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118919" e_stop="118893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</genome_strand>
        <mrna_strand>CCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCCCGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228622" ref_strand="-" ref_description="SGN-E228622 [cLEL-29-O7](-)">
      <seq>ttttttttttttttttttttttttttctccaaaaggtaaagtggcaattttatttaggcattttattaatcaggataccaggaaggcctatcctatggcctttattcatacaacttgatgcatttatttttccaaacatcattagtccctaatatgtttagccatcaacatcttgactagttcctcagcacccattccaccagagttgaaacaccataacccggggcgtttttcttttcatcgctccatacggggccagctacatcgagatgcaaccactgaaccttctcgtcaacaaactgcataaacaaagaccaaatgtcatgtttctcgtctgaaaataaagatatgtagaatgtaccaaaatgtcagtcgtagagtgatgatgggatgagtacttgttgaggaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96463" stop="120379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118893" g_stop="118919" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.741"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118920" i_stop="119692" i_length="773">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119693" g_stop="120079" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="413" r_length="386" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E228622" ref_strand="-">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228622" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118893" e_stop="118919"/>
          <exon e_start="119693" e_stop="120079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTTATTTCTTTTTAAATTTTAGTTTCAAGCACTACCAGAGTATAAGCATATTAAAATGAGGTATATCAAGTCATCAACTTGTTGAGTCAAATTGTATGGTTCTTAGTGTTATCTTTATTTAATATTTATCAACTTAATACTTTTGTCATTACGTTAAAATACATATAAAAATTGTCTCATTTAAAGGATGTTTTTCAATGTTGAGTTGATAAAATCTTACCTAAAACTAGTAACTGGCTAAAAAAAATATTAAGTACTAATAATTTCCATCTAAATAGTGTAAAAAATAAATTTTGAATAAACAAGTATATAAAGTGTATTTTAATATTAGGCCGCAAGTTGAAATTTCGCTTTAGGCCCCCAATTACGTTGAGCTGTCCCTGCTTCTTTACATATGTTAGGTTGAGTATTTAAACTAAAGGTATGTAAAATGTATTCAAATGCCTTTTATTTTTATGATTTCAAACATGTCATGTGAAAAAAATTAAAATTAAGAATTAGCAAAAAAAAAGTAAGAGATCCTGTCGTAACCTTAAAAAACGACTTTCATTGTACCAAACTCACAAACACTGATCATGTGCATGGTTGCATGGTTTTACTATCTTTATTCAATAGAAGACTTACTACAGTGATCCAGTCTCAAAGTGAAATAAATACTATAACTTCAATCTTGTTCAACAAAATCATCAAGCAGTAAAACAAATATATATCTCTTTCATCTCCAAGTTACGATACTAGAGTGAATATAATCTCTATCAGACATACGTAAATAAGACGGGAATAATAAATTTCATTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTGTTTGAGGAAGAGA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTAATCAGGATACCAGGAAGGCCTATCCTATGGCCTTTATTCATACAACTTGATGCATTTATTTTTCCAAACATCATTAGTCCCTAATATGTTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGGGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACATCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCATAAACAAAGACCAAATGTCATGTTTCTCGTCTGAAAATAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTG-TTGAGGAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227896" ref_strand="+" ref_description="SGN-E227896 [cLEL-39-C13](-)">
      <seq>gtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120446" stop="96463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120146" g_stop="120064" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="360" r_length="277" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118912" i_length="776">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118894" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="378" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E227896" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120146" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118911" e_stop="118894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGA</genome_strand>
        <mrna_strand>GTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216809" ref_strand="+" ref_description="SGN-E216809 [cLEL-1-C20](-)">
      <seq>tgatatgattaacacggggcctggtaatgacggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaataattgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120427" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120127" g_stop="120064" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="360" r_length="296" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118912" i_length="758">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118894" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="378" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E216809" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120127" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118911" e_stop="118894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGA-TGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGA</genome_strand>
        <mrna_strand>TGATATGATTAACACGGGGCCTGGTAATGACGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATAATTGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222765" ref_strand="+" ref_description="SGN-E222765 [cLEL-16-B17](-)">
      <seq>ttaacttgggacctggtaatggcggtgctataaatggggctctcttccccaaacaatttgtttcgaagaaggttcagtggttgcatctcaacgtagctggccccgtatggagcgatgaaaaaaaaaaccccccggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgcccctttaccttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120419" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="120064" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="333" r_length="277" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118924" i_length="764">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118923" g_stop="118894" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="363" r_length="30" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E222765" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118923" e_stop="118894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGA</genome_strand>
        <mrna_strand>TTAACTTGGGACCTGGTAATGGCGGTGCTATAAATGGGGCTCTCTTCCCCAAACAA...................................................................................................TTTGTTTCGAAGAAGGTTCAGTGGTTGCATCTCAACGTAGCTGGCCCCGTATGGAGCGATGAAAAAAAAAACCCCCCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCCCTTTACCTTTTCCAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229294" ref_strand="-" ref_description="SGN-E229294 [cLEL-29-O7](-)">
      <seq>ttttttttttttttttttttttttttttacaaaaggaaaaggggcaattttatttaggcattttattaatcaagataacaggaaggcctatactatggcctttattcatacaactggatgcatttatttttccaaacatcattagtccctaatatgtttagccatcaacatcttgactagttcctcagcacccattccaccagagtggaaacaccataccccggggggttttttttttcatcgctccatacggggccagctacatcgagatgcaaccactgaaccttttggtcaacaaactgcataaacaaagaccaaatgtcatgtttctcgtctgaaaataaagatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="96462" stop="120317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118894" g_stop="118919" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.731"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118920" i_stop="119691" i_length="772">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119692" g_stop="120017" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="352" r_length="326" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E229294" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229294" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118894" e_stop="118919"/>
          <exon e_start="119692" e_stop="120017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTATTTCTTTTTAAATTTTAGTTTCAAGCACTACCAGAGTATAAGCATATTAAAATGAGGTATATCAAGTCATCAACTTGTTGAGTCAAATTGTATGGTTCTTAGTGTTATCTTTATTTAATATTTATCAACTTAATACTTTTGTCATTACGTTAAAATACATATAAAAATTGTCTCATTTAAAGGATGTTTTTCAATGTTGAGTTGATAAAATCTTACCTAAAACTAGTAACTGGCTAAAAAAAATATTAAGTACTAATAATTTCCATCTAAATAGTGTAAAAAATAAATTTTGAATAAACAAGTATATAAAGTGTATTTTAATATTAGGCCGCAAGTTGAAATTTCGCTTTAGGCCCCCAATTACGTTGAGCTGTCCCTGCTTCTTTACATATGTTAGGTTGAGTATTTAAACTAAAGGTATGTAAAATGTATTCAAATGCCTTTTATTTTTATGATTTCAAACATGTCATGTGAAAAAAATTAAAATTAAGAATTAGCAAAAAAAAAGTAAGAGATCCTGTCGTAACCTTAAAAAACGACTTTCATTGTACCAAACTCACAAACACTGATCATGTGCATGGTTGCATGGTTTTACTATCTTTATTCAATAGAAGACTTACTACAGTGATCCAGTCTCAAAGTGAAATAAATACTATAACTTCAATCTTGTTCAACAAAATCATCAAGCAGTAAAACAAATATATATCTCTTTCATCTCCAAGTTACGATACTAGAGTGAATATAATCTCTATCAGACATACGTAAATAAGACGGGAATAATAAATTTCATTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAAAAGGAAAAGGGGCAATTTTATTTAGGCATTTTATTAATCAAGATAACAGGAAGGCCTATACTATGGCCTTTATTCATACAACTGGATGCATTTATTTTTCCAAACATCATTAGTCCCTAATATGTTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTGGAAACACCATACCCCGGGGGGTTTTTTTTTTCATCGCTCCATACGGGGCCAGCTACATCGAGATGCAACCACTGAACCTTTTGGTCAACAAACTGCATAAACAAAGACCAAATGTCATGTTTCTCGTCTGAAAATAAAGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226880" ref_strand="+" ref_description="SGN-E226880 [cLEL-26-P16](-)">
      <seq>ctctcttcctcaaacaatttgttgacaagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120267" stop="96458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120080" g_stop="120064" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="312" r_length="295" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119669" i_stop="118922" i_length="748">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118921" g_stop="118895" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="339" r_length="27" r_score="0.704"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E226880" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120080" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
          <exon e_start="118921" e_stop="118895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAG</genome_strand>
        <mrna_strand>CTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACAAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222553" ref_strand="+" ref_description="SGN-E222553 [cLEL-16-K21](-)">
      <seq>gctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttacctttcccaactgaaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120664" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120364" g_stop="120343" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="210" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119964" g_stop="119669" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="507" r_length="297" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119668" i_stop="118912" i_length="757">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118911" g_stop="118896" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="523" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E222553" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120364" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119669"/>
          <exon e_start="118911" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTT-TCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTCCCAACTGAAATTTATTATTCCCGTCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219685" ref_strand="+" ref_description="SGN-E219685 [cLEL-24-C20](-)">
      <seq>gctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcnaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120664" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120364" g_stop="120343" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="210" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="487" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="502" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E219685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120364" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCNAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224117" ref_strand="+" ref_description="SGN-E224117 [cLEL-19-J12](-)">
      <seq>tagcaagggaggttgttgaagctgctgaggcaagtggtaaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120527" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120227" g_stop="120064" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="441" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="456" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E224117" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120227" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTAAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224235" ref_strand="+" ref_description="SGN-E224235 [cLEL-19-J12](-)">
      <seq>ggtgaaaaactatgaaggatgcctatggaggaaagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcgaatgagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120492" stop="54372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120192" g_stop="120064" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="406" r_length="277" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="421" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E224235" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120192" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GGTGAAAAACTATGAAGGATGCCTATGGAGGAAAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCGAATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215659" ref_strand="+" ref_description="SGN-E215659 [cLEL-15-M22](-)">
      <seq>atgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120474" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120174" g_stop="120064" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="388" r_length="277" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="403" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E215659" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120174" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>ATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220021" ref_strand="+" ref_description="SGN-E220021 [cLEL-24-C20](-)">
      <seq>gtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120446" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120146" g_stop="120064" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="360" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="375" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E220021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120146" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217977" ref_strand="+" ref_description="SGN-E217977 [cLEL-23-B24](-)">
      <seq>gaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgtcgagaaggttcagtggttgcatttcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccgcggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatggaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120442" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120142" g_stop="120064" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119669" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="375" r_length="296" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119668" i_stop="118912" i_length="757">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118896" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="391" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E217977" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120142" e_stop="120064"/>
          <exon e_start="119964" e_stop="119669"/>
          <exon e_start="118911" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGTCGAGAAGGTTCAGTGGTTGCATTTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCGCGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGGAATTTATTATTCCCGTCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229634" ref_strand="+" ref_description="SGN-E229634 [cLEL-4-K7](-)">
      <seq>aaatcaggagtggctgatatgattaacacggggcctggtaatggcggtactataactggtgctctcttcctcaaacaatttgttgacgaaaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacggggtatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcttcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120441" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120141" g_stop="120064" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119688" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="355" r_length="277" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="370" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E229634" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120141" e_stop="120064"/>
          <exon e_start="119964" e_stop="119688"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>AAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTACTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAAAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGGTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCTTCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAAAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215870" ref_strand="+" ref_description="SGN-E215870 [cLEL-15-N22](-)">
      <seq>atcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120439" stop="66046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120139" g_stop="120064" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119693" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="348" r_length="272" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119692" i_stop="118911" i_length="782">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118910" g_stop="118896" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="363" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E215870" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120139" e_stop="120064"/>
          <exon e_start="119964" e_stop="119693"/>
          <exon e_start="118910" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>ATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222469" ref_strand="+" ref_description="SGN-E222469 [cLEL-16-K21](-)">
      <seq>gatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcctgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaatgaaatttattattcccgtcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120426" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120126" g_stop="120064" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119669" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="359" r_length="296" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119668" i_stop="118912" i_length="757">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118911" g_stop="118896" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="375" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E222469" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120126" e_stop="120064"/>
          <exon e_start="119964" e_stop="119669"/>
          <exon e_start="118911" e_stop="118896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAGATTGAAGTTATAGTATTTATTTCACTTTGAGACTGGATCACTGTAGTAAGTCTTCTATTGAATAAAGATAGTAAAACCATGCAACCATGCACATGATCAGTGTTTGTGAGTTTGGTACAATGAAAGTCGTTTTTTAAGGTTACGACAGGATCTCTTACTTTTTTTTTGCTAATTCTTAATTTTAATTTTTTTCACATGACATGTTTGAAATCATAAAAATAAAAGGCATTTGAATACATTTTACATACCTTTAGTTTAAATACTCAACCTAACATATGTAAAGAAGCAGGGACAGCTCAACGTAATTGGGGGCCTAAAGCGAAATTTCAACTTGCGGCCTAATATTAAAATACACTTTATATACTTGTTTATTCAAAATTTATTTTTTACACTATTTAGATGGAAATTATTAGTACTTAATATTTTTTTTAGCCAGTTACTAGTTTTAGGTAAGATTTTATCAACTCAACATTGAAAAACATCCTTTAAATGAGACAATTTTTATATGTATTTTAACGTAATGACAAAAGTATTAAGTTGATAAATATTAAATAAAGATAACACTAAGAACCATACAATTTGACTCAACAAGTTGATGACTTGATATACCTCATTTTAATATGCTTATACTCTGGTAGTGCTTGAAACTAAAATTTAAAAAGAAATAAAAAA</genome_strand>
        <mrna_strand>GATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCCTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541135" ref_strand="-" ref_description="SGN-E541135 [TUS-61-M8]">
      <seq>aaaaaaaaaaaaaaaactcgagagaactagttctcgagttttttttttttttttaagacgggaataataaatttcattgaaaaggtaaagtggcaattttatttaggcatttattcatctagaaaacaagaaagcctattctattgcctttattcatacaacttgatgcatttattttctcaaacatcatgagtccctaatatgcttagccatcaacatcttgactagttcctcagcacccattccaccagagttgaaacaccataacccgtggcgtttttcttttcatcgctccatacggggccagctacgtcgagatgcaaccactgaaccttctcgtcaacaaactgcaaagacaacgaccaaatgtcatgtttctcgtctcaaactaaagatatgtagaatgtaccaaaatgtcagtcgtagagtgatgatgggatgagtacttgtttgaggaagagagcaccagttatagcaccgccattaccaggtcccaagttaatcatatcagccacacctgatttcatactctcccagtaactctcctccataggcatcctccatagtttttcaccacttgcctcagcagcttcaacaacctcccttgctaggtcatcattaggtgtaaaagcacctgtattcgtatacgagatatccaatgaagttcaagcagagtagacgtacaacgtgtaccaaacaaagaatagagtcacaaacaaatataccagcaactgaaggtccaagagcaaccataatagcaccagttaatgttgccagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37315" stop="120698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119398" g_stop="119409" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119410" i_stop="119628" i_length="219">
            <donor d_prob="0.078" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.51"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119629" g_stop="120398" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="781" r_length="769" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E541135" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119398" e_stop="119409"/>
          <exon e_start="119629" e_stop="120398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAAAAAAAGTAAGAGATCCTGTCGTAACCTTAAAAAACGACTTTCATTGTACCAAACTCACAAACACTGATCATGTGCATGGTTGCATGGTTTTACTATCTTTATTCAATAGAAGACTTACTACAGTGATCCAGTCTCAAAGTGAAATAAATACTATAACTTCAATCTTGTTCAACAAAATCATCAAGCAGTAAAACAAATATATATCTCTTTCATCTCCAAGTTACGATACTAGAGTGAATATAATCTCTA-TCAGACATACGTAAATAAGACGGGAATAATAAATTTCATTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTGTTTGAGGAAGAGAGCACCAGTTATAGCACCGCCATTACCAGGTCCCAAGTTAATCATATCAGCCACACCTGATTTCATACTCTCCCAGTAACTCTCCTCCATAGGCATCCTCCATAGTTTTTCACCACTTGCCTCAGCAGCTTCAACAACCTCCCTTGCTAGGTCATCATTAGGTGTAAAAGCACCTGTATTCGTATACGAGATATCCAATGAAGTTCAAGCAGAGTAGACGTACAACGTGTACCAAACAAAGAATAGAGTCACAAACAAATATACCAGCAACTGAAGGTCCAAGAGCAACCATAATAGCACCAGTTAATGTTGCCAGATCA</genome_strand>
        <mrna_strand>AAAAAAAAAAAA...........................................................................................................................................................................................................................AAAACTCGAGAGAACTAGTTCTCGAGTTTTTTTTTTTTTTTTAAGACGGGAATAATAAATTTCA-TTGAAAAGGTAAAGTGGCAATTTTATTTAGGCA-TTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTGTTTGAGGAAGAGAGCACCAGTTATAGCACCGCCATTACCAGGTCCCAAGTTAATCATATCAGCCACACCTGATTTCATACTCTCCCAGTAACTCTCCTCCATAGGCATCCTCCATAGTTTTTCACCACTTGCCTCAGCAGCTTCAACAACCTCCCTTGCTAGGTCATCATTAGGTGTAAAAGCACCTGTATTCGTATACGAGATATCCAATGAAGTTCAAGCAGAGTAGACGTACAACGTGTACCAAACAAAGAATAGAGTCACAAACAAATATACCAGCAACTGAAGGTCCAAGAGCAACCATAATAGCACCAGTTAATGTTGCCAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219234" ref_strand="+" ref_description="SGN-E219234 [cLEL-11-J22](-)">
      <seq>tatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacaccacagggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttatttacgtatgtctgatagagattatattcaaaaatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120445" stop="119339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120145" g_stop="120064" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119639" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="409" r_length="327" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="427"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E219234" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120145" e_stop="120064"/>
          <exon e_start="119964" e_stop="119639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCAC-GGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCA</genome_strand>
        <mrna_strand>TATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACACCACAGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326458" ref_strand="+" ref_description="SGN-E326458 [cTOC-14-H20]">
      <seq>tcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaagaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaattgccactttaccttttcaaatgaaatttattattcccgtcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120889" stop="119369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120589" g_stop="120491" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="160" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="348" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119964" g_stop="119670" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="643" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="644" polyA_stop="653"/>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E326458" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120589" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT</genome_strand>
        <mrna_strand>TCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAAGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215730" ref_strand="+" ref_description="SGN-E215730 [cLEL-15-N22](-)">
      <seq>agagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaccttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120449" stop="85523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120149" g_stop="120064" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119678" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="373" r_length="287" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E215730" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120149" e_stop="120064"/>
          <exon e_start="119964" e_stop="119678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATT</genome_strand>
        <mrna_strand>AGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376692" ref_strand="+" ref_description="SGN-E376692 [TUS-19-C12]">
      <seq>agctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121088" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120788" g_stop="120755" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="457" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119964" g_stop="119686" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="736" r_length="279" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E376692" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120788" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAAT</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228859" ref_strand="+" ref_description="SGN-E228859 [cLEL-29-G1](-)">
      <seq>tgcttttacacctaatatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactggaagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgcccctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120550" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120250" g_stop="120064" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119686" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="465" r_length="279" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E228859" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120250" e_stop="120064"/>
          <exon e_start="119964" e_stop="119686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAAT</genome_strand>
        <mrna_strand>TGCTTTTACACCTAAT-ATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGAAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCCCTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228955" ref_strand="+" ref_description="SGN-E228955 [cLEL-29-G1](-)">
      <seq>aagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120496" stop="66303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120196" g_stop="120064" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119686" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="412" r_length="279" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E228955" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120196" e_stop="120064"/>
          <exon e_start="119964" e_stop="119686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAAT</genome_strand>
        <mrna_strand>AAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234222" ref_strand="+" ref_description="SGN-E234222 [cLEL-8-L87](-)">
      <seq>aaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgtaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaagcatattagggactcatgatgtttgagaaaataaatgcatcaagttgtatgaataaaggcaatagaataggctttcttgttttctagatgaataaaatgcctaaataaaagtgccactttaccttttccaatgaaagaagagagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120252" stop="119387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119952" g_stop="119688" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E234222" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119952" e_stop="119688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA</genome_strand>
        <mrna_strand>AAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGTAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAAGTGCCACTTTACCTTTTCCAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222706" ref_strand="+" ref_description="SGN-E222706 [cLEL-16-H10](-)">
      <seq>tatggttgctctggacctcagttgctgggcttttacacctaatatgacctagcaaggaggttgttaagctgctaggcaagtggtaaaacctatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgaaacattaccttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120556" stop="119392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120371" g_stop="120343" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="209" r_length="182" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119964" g_stop="119689" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="485" r_length="276" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E222706" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120371" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGA</genome_strand>
        <mrna_strand>TATGGTTGCTC-TGGACC-TCAGTTGCTG...........................................................................................G-GCTTTTACACCTAAT-ATGACCTAGCAA-GGAGGTTGTT-AAGCTGCT-AGGCAAGTGGT-AAAACCTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGAAACATTACCTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225374" ref_strand="+" ref_description="SGN-E225374 [cLEL-17-E14](-)">
      <seq>ctggccccgtatggatcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataaaattgccactttacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120224" stop="119396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119924" g_stop="119696" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E225374" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119924" e_stop="119696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTT</genome_strand>
        <mrna_strand>CTGGCCCCGTATGGATCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229183" ref_strand="+" ref_description="SGN-E229183 [cLEL-29-L23](-)">
      <seq>cggcacgaggggtgtgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120525" stop="119415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120227" g_stop="120064" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119715" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="411" r_length="249" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E229183" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120227" e_stop="120064"/>
          <exon e_start="119964" e_stop="119715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>CGGCACGAG-GGGTG-TGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTGGA-AAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235029" ref_strand="+" ref_description="SGN-E235029 [cLEL-6-K5](-)">
      <seq>ggcaagtggtaacaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctaatatgattaacacggggcctggtaatgacggtgctataactggtgctctcttcctcaaacaattttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttgattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120499" stop="119415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120199" g_stop="120064" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119715" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="387" r_length="251" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E235029" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120199" e_stop="120064"/>
          <exon e_start="119964" e_stop="119715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAG-TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACT-CATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>GGCAAGTGGTAACAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTAATATGATTAACACGGGGCCTGGTAATGACGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAAATGATGTTGGA-AAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228703" ref_strand="+" ref_description="SGN-E228703 [cLEL-29-L23](-)">
      <seq>gtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgttggaaaaataaatgcatcaagttgtatgaataaaggcaatagtataggctttcttgttatcttcattaataaaatgcctaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120491" stop="119415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120191" g_stop="120064" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119964" g_stop="119715" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="377" r_length="249" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E228703" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120191" e_stop="120064"/>
          <exon e_start="119964" e_stop="119715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAA</genome_strand>
        <mrna_strand>GTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTGGA-AAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTCATTAATAAAATGCCTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325875" ref_strand="+" ref_description="SGN-E325875 [cTOC-12-P18]">
      <seq>gacaattgaggtgaacaatagtgatgctgagggtaggctcacactcgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgctgaggaactagtcaagatgttgatggctaaacatattagggactaatgatgtttggaaaaataaatgcatcaagttgtatgaataaaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120878" stop="119460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120578" g_stop="120491" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="149" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119964" g_stop="119760" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="542" r_length="205" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E325875" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120578" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAAT</genome_strand>
        <mrna_strand>GACAATTGAGGTGAACAATAGTGATGCTGAGGGTAGGCTCACACTCGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238601" ref_strand="+" ref_description="SGN-E238601 [cLED-17-H22]">
      <seq>gtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatggtgtttcaactctggtggaatgggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120846" stop="119553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120546" g_stop="120491" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="117" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="305" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119964" g_stop="119853" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="417" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E238601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120546" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGC</genome_strand>
        <mrna_strand>GTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328926" ref_strand="+" ref_description="SGN-E328926 [cTOC-24-P17]">
      <seq>aacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaaagaaaacgccacggggtatggtgtttcactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121194" stop="119566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120884" g_stop="120755" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="139" r_length="128" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="313" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="562" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119964" g_stop="119866" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="659" r_length="97" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E328926" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120884" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTG</genome_strand>
        <mrna_strand>GTGGTGGCTACAACCT-CAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGC-AAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAG-AAAACGCCACGGGGTATGGTGTTTC-ACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291098" ref_strand="+" ref_description="SGN-E291098 [cLET-8-I10]">
      <seq>tcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggccccgtatggagcgatgaaaagaaaaacgccacgggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120897" stop="119580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120597" g_stop="120491" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="168" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="356" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119964" g_stop="119880" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="441" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E291098" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120597" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATG</genome_strand>
        <mrna_strand>TCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295151" ref_strand="+" ref_description="SGN-E295151 [cLET-20-B23]">
      <seq>gatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtatatttgtttgtgactctattctttgtttggtacacgttgtacgtctactctgcttgaacttcattggatatctcgtatacgaatacaggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgattaacttgggacctggtaatggcggtgctataactggtgctctcttcctcaaacaagtactcatcccatcatcactctacgactgacattttggtacattctacatatctttagtttgagacgagaaacatgacatttggtcgttgtctttgcagtttgttgacgagaaggttcagtggttgcatctcgacgtagctggccccgtatggagcgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120697" stop="119601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120397" g_stop="119901" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E295151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120397" e_stop="119901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAA</genome_strand>
        <mrna_strand>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232080" ref_strand="+" ref_description="SGN-E232080 [cLED-7-L7]">
      <seq>aaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggngcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcatctcgatgtagctggnccccgtatggagcgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121090" stop="119602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120790" g_stop="120755" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="210" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="271" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="459" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119964" g_stop="119902" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E232080" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120790" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGG-CCCCGTATGGAGCGATGAA</genome_strand>
        <mrna_strand>AAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGNGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGNCCCCGTATGGAGCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231781" ref_strand="+" ref_description="SGN-E231781 [cLED-4-P20]">
      <seq>agctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttgacgagaaggttcagtggttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121088" stop="119635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120788" g_stop="120755" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="457" r_length="188" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119964" g_stop="119935" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="487" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E231781" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120788" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCAT</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGACGAGAAGGTTCAGTGGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323886" ref_strand="+" ref_description="SGN-E323886 [cTOC-5-P10]">
      <seq>gacattgtcttagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcangagtggctgatatgattaacacggggcctggtaatggcggtgctataactggtgctctcttcctcaaacaatttgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="120904" stop="119762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120604" g_stop="120491" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="175" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120251" g_stop="120064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="363" r_length="188" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119964" g_stop="119957" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="371" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E323886" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120604" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120064"/>
          <exon e_start="119964" e_stop="119957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGA</genome_strand>
        <mrna_strand>GACATTGTCTTAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCANGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA...................................................................................................TTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326359" ref_strand="+" ref_description="SGN-E326359 [cTOC-14-P12]">
      <seq>aacctttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaacgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcaaaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctancaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121192" stop="119815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120884" g_stop="120755" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="139" r_length="128" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="313" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="374" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120114" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="512" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E326359" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120884" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACT</genome_strand>
        <mrna_strand>GTGGTGGCTACAACCT-CAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAACGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGC-AAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAAAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTANCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237539" ref_strand="+" ref_description="SGN-E237539 [cLED-19-H5]">
      <seq>tcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggagtggctgatatgattaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121085" stop="119815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120785" g_stop="120755" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="205" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="266" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120114" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="404" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E237539" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120785" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACT</genome_strand>
        <mrna_strand>TCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300464" ref_strand="+" ref_description="SGN-E300464 [cLET-45-J15]">
      <seq>aaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctatcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgggagagtatgaaatcaggtgtggctgatatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121166" stop="119817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120866" g_stop="120755" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="285" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="346" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120117" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="481" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E300464" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120866" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTA</genome_strand>
        <mrna_strand>AAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGC-AAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTATCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232115" ref_strand="+" ref_description="SGN-E232115 [cLED-7-J14]">
      <seq>ggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctatggaggagagttactgtgagagtatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121179" stop="119838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120879" g_stop="120755" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="297" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120138" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="472" r_length="114" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E232115" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120879" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAAT</genome_strand>
        <mrna_strand>GGCTACAACCT-CAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGC-AAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGTGAGAGTATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240192" ref_strand="+" ref_description="SGN-E240192 [cLED-25-O23]">
      <seq>agctcttggtgaaattaggccttccagagtagaggggcatttcattgtctcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaggttgttgaagctgctgacgcaagtggtgaaaaactatggaggatgcctatggagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121088" stop="119861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120788" g_stop="120755" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="208" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="269" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120251" g_stop="120161" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="360" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E240192" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120788" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGA</genome_strand>
        <mrna_strand>AGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GGGCATTTCATTGTCTCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGACGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318772" ref_strand="+" ref_description="SGN-E318772 [cTOB-11-M13]">
      <seq>aacaaagttagccttggttggaaagggattaacttttgacagtggtggctacaacctcaaggtcggagctggttcgaggattgagctaatgaagaatgacatgggaggggctgctgctgttttaggtgcagcaaaagctcttggtgaaattaggccttccagagtagaggtgcatttcattgtcgcagcatgtgaaaatatgatcagtgcagaaggcatgaggcctggagacattgtcacagcttcaaatggtaagacaattgaggttaacaatactgatgctgagggtaggctcacacttgctgatgctttgatatatgcctgtaaccaaggtgttgagaagataattgatctggcaacattaactggtgctattatggttgctcttggaccttcagttgctggtgcttttacacctaatgatgacctagcaagggaagttgttgaagctgctgaggcaagtggtgaaaaactatggaggatgcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121282" stop="119867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120998" g_stop="120958" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120884" g_stop="120755" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="169" r_length="128" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120664" g_stop="120491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="343" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120403" g_stop="120343" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="404" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120251" g_stop="120167" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="489" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E318772" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120998" e_stop="120958"/>
          <exon e_start="120884" e_stop="120755"/>
          <exon e_start="120664" e_stop="120491"/>
          <exon e_start="120403" e_stop="120343"/>
          <exon e_start="120251" e_stop="120167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACCGGGAAAAAAAATTTCTATTCTTCTTTTATTCTTACGTAAAGATTGGCTGAACATTGGTTTTTGTGTTCCCTAGTTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAGGTGAGTCCTTCTTTTATCATGCATCATTCGAGAATGTATGTATTTACTCGGAAGTGCATGTATTCAATTATCGTGTATGTTACGTTGCAGGTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAGGTATTAATTCAACATTGTTATTATGCATCGGTCATCGATCACTTCAATGTGTATGTTTCCCCTGATTCACTGATTGAATTTATGCAGATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTAT</genome_strand>
        <mrna_strand>AACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACA.........................................................................GTGGTGGCTACAACCT-CAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGC-AAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG..........................................................................................GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG.......................................................................................ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG...........................................................................................GTGCTTTTACACCTAATGATGACCTAGCAAGGGAAGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121085" stop="122134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121385" g_stop="121833" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121385" e_stop="121833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAGACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAAGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTC-AAAAATAATTTATGTATGAAAAAAAATTAAAATATAAATTGAACTTTGATAGAAGAATCATATATACCCTTAAATA-ATTTTTTAAGAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGATATATATGAGCCACTTTTATAACGAGGGGTTTATTAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTTTAATTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG--AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317836" ref_strand="+" ref_description="SGN-E317836 [cTOA-30-J3]">
      <seq>aaacctaaaggagcttagccgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccnctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctggtttgtatggtaaatatgagctcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122570" stop="123696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122870" g_stop="123396" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E317836" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122870" e_stop="123396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACC-CTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGAC</genome_strand>
        <mrna_strand>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCNCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGGTTTGTATGGTAAATATGAGCTCGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709889" ref_strand="+" ref_description="SGN-E709889 [FA53CC07]">
      <seq>ccttttaaggtcgccgnngntgagnnnacaaaccctagagccattaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctgttttgtatggtaaatatgagctcggacgagttttgggtcaaggttctttcgctaaagtataccatgctcgtaacgtggtaacaggggagaatatagcaatgaaagttgttggaaaagagaaggtgataaaagtaggaatgatggagcaaatcaaaagagaaatctccgtcatgaaaatggtgaaaacatccaaacatagtcgagcttcacgaagttatggcaagcaaaacgaagatttacttccccatggaatacgttaaaggcggtgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122603" stop="123940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122873" g_stop="123640" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E709889" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122873" e_stop="123640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTG-AAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCGCCATGGAATACGTTAAAGGCGGTGAATT</genome_strand>
        <mrna_strand>CCT-TTTAAG-GTCGCCGNNGNTGAG-NNNACAAACCCTAGAGCCATTAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTGAAAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCCCCATGGAATACGTTAAAGGCGGTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339676" ref_strand="+" ref_description="SGN-E339676 [cTOE-16-K1]">
      <seq>gagcttagccgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctgttttgtatggtaaatatgagctcggacgagttttgggtcaaggttctttcgctaaagtataccatgctcgtaacgtggtaacaggggagaatatagcaatgaaagttgttggaaaagagaaggtgataaaagtaggaatgatggagcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122580" stop="123821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122880" g_stop="123521" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E339676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122880" e_stop="123521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATC</genome_strand>
        <mrna_strand>GAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326875" ref_strand="+" ref_description="SGN-E326875 [cTOC-25-I16]">
      <seq>gagcttagccgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccctgttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctgttttgtatggtaaatatgagctcggacgagttttgggtcaaggttctttcgctaaagtataccatgctcgtaacgaggtaaccggggagaatatagccatgaaagttgttggaaaagcaaagtgataaaagtaggaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122580" stop="123811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122880" g_stop="123511" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E326875" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122880" e_stop="123511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCT-TTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGAT</genome_strand>
        <mrna_strand>GAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTGTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGAGGTAACCGGGGAGAATATAGCCATGAAAGTTGTTGGAAAAG-CAAAGTGATAAAAGTAGGAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323856" ref_strand="+" ref_description="SGN-E323856 [cTOC-5-N21]">
      <seq>gagcttagccgtcgttgagtgttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122580" stop="123443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122880" g_stop="123143" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E323856" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122880" e_stop="123143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTT</genome_strand>
        <mrna_strand>GAGCTTAGCCGTCGTTGAGTGTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394137" ref_strand="+" ref_description="SGN-E394137 [TUS-40-N23]">
      <seq>ccgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaagaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccccctacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122588" stop="123538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122888" g_stop="123238" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E394137" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122888" e_stop="123238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCT</genome_strand>
        <mrna_strand>CCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAGAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCCCCTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330343" ref_strand="+" ref_description="SGN-E330343 [cTOD-4-N14]">
      <seq>cgtcgttgagttttacaaaccctagagagacaaaacctaaacctcagtttttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattcaccaaaaccccctttttcagttataaaccaaaacccattctttttttcttaacaaaaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctacctcatttcacttccatttaaacccatcaatttttttttcaaaaatcgaacacccttttcgatcttgcttcagaaaagttgctaaatttcgcagaaccagtgttttataatggggacagaagaaaaatgtgctgttttgtatggtaaatatgagctcggacgagttttgggtcaaggttctttcgctaaagtataccatgctcgtaacgtggtaacaggggagaatatagcaatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122589" stop="123774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122889" g_stop="123474" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E330343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122889" e_stop="123474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAG</genome_strand>
        <mrna_strand>CGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697471" ref_strand="+" ref_description="SGN-E697471 [FA03AC05]">
      <seq>tttggttccgattttgggaatgcagagagatgataggcaaatcccttctttctagtttgattttcggaggcttaaagccccaaatttcacttcccggagttagccggaattgccatcggaattgtcaccggaaacacgtagaagacgggtgaactcattccccaaaaccccctttttcagttataaaccaaaacccattctttttttcttatcaaaaagtatataccctttttgaatttcgttcgtcggcggccggagtttccaccggaaacacgtcggagacgagtaaacccacctatctcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="122638" stop="123543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122938" g_stop="123243" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E697471" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122938" e_stop="123243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTT</genome_strand>
        <mrna_strand>TTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCCCCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTATCAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTATCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707149" ref_strand="-" ref_description="SGN-E707149 [FA32AG09]">
      <seq>ttttttttttttttttttttttaaaaattcatttacagagaattcaagaacatattcagagatgagtctcatttcaattctaacataaccaggaacaaaactaacaaatngcaatgctttaataacatgaaactcagcaaatgttggattctcaggtgcggatttccaacaaatgtccttgagtgctggcctaagctctttgctgcagaattgattatattccaatgtatcaccacaagctttcttcacctccacaaccagaaatgaaggtgtcacagcaaatatatcagcagatattcccaacttccctttcctcccactctcttgcccctgcaatctaacactagaatcactccttttcaagctgaatttcgacgttttagctacttcctcgagcttcgaaatcacactactagctggctttgttgttgcaaatctcaactgttccttctccttcttcttcttttcctcaaacaaaggagacaaatcaaacccctccgacaatgaaatgatatgaaaagcattcaaagactcaatctttttcgccttccctacacaatcttcgtctcccacatgagaaaactcttcctccaccttactcctcaaagtccttggcacagtcttcttgaaccaattagactccataatctttgaagcagtaattcgagttctcggattcggatccaacatctttacaatcaacttctttgcatcagatgacatccaaggtggacacttgaaatcacccttgtgaattttcttatacatagccatgatattatcatcttgaaatggtaaaaaaccagctaaaagcacataaagaatcactccacatgaccaaatatctgatgttgcaccatcatatccatgattaccaagtacttcaggggcaacataagcaggagtaccacaagttgtatgcaataaaccatcttgccttaaatgatcagtaaaagcactaagtccgaaatcggttaccttaagattgccttcttcatctaacagcaaattctcaggctttaaatctctgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="-" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131269" stop="123442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125966" g_stop="125927" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125926" i_stop="124747" i_length="1180">
            <donor d_prob="0.851" d_score="0.62"/>
            <acceptor a_prob="0.347" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124746" g_stop="123741" g_length="1006"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="1035" r_length="997" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="-" ref_id="SGN-E707149" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>1046</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125966" e_stop="125927"/>
          <exon e_start="124746" e_stop="123741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTATTGTTGTATTCTAAGTCATATAAATTCATAGGTATATTTTTTTCCCCTTGTTTCCTATTTTCATTTCTTTGAATGGACTAATTTTACGAAGTATTTTGCTACTTTCCATCAACACATGAAATATCTTTAGCGCTTTGTTTATTTTCCCTCAAGTGAAGTCTGAAAAGGATGGAGTACGTGCAAAACTTAACCTATCTTAACGAAACAAAAGAGATTATTTTCAAAAAATTCTTGACGTTAAGTTTATAATAGTGTCAATAATGGATACAAAGTGAGGATAGGTTAAAAGTGCTGTTGAATTATCAGGCCATGGCCTAACAAAGAAAAGCAATTGCCATCATACCAACAAAGTGGATAATACACACCAGATAAAAAAACAAAAGACATTAAGCTATCTTTTCGGGGTCCAATATAGATATCAAACACCGATTAGAAAATGAGCAACCAATTCTCAAGAAGCCAATATACCTTTTACAAGCTGCTAACATATATACAATCTTTACTATGTTCTCTTAACACATGTATTCTAGAGACCTTCAGAATTCAGTCACAATCTCAACAATACATGTCCATTCATCGCAAAGGATTCAATCTAGCCACAAGTTCACATACAGGCTATCTTGTTACGACTTCACCCCACTCGAAGACCAAATAGTGGTCACCAAATTTGACTACTTTTTGTAATGAAGGGACAAATTGATAAAGATAAGGTAACTCCCATGTGTATGAAAACACAAGTAGGGCCCTAGTCAAAATATGATAGCATATGGGGTTTGCAAGGATGAAGATATTATAGTGGTTTGGGTCCTACTACCACAAGAACCAAGGATAAAACTGAACAAATTCAATCCTCTTTAACACATGAATTCAAGAAACATACTATAGATTCCATCTTAATTTCAAGAATACATCAAACAACAAGAACAAAACCAAATGATTCAATCGCTCAAATACATGAACTCAAGAGACATACAAAGTCTCGATTTCAAGAATACATCTAACAGCAAGAACAAGAACAAAACTAAACGATTCAATCACTCAAACACGCAATTTCAGGAGATGTGATTCAAGAGATTCCAGTCTCAATTTCAAGAACATATCTGAATAACAAGAATAGAACTAAACGATTCAAGAGACACCGTCTCAATTTCAAGAACACATCACTAAACAACAAGAATAAGAACAAAAACTAAACAAATTCAATCTAACAGATGAATTCAAGAGACATACTTCAGAGATGAAGTCTCAATTTCAAATCTAAACAATAACAAGAACAAAAACTAAACAAAT-GCAATTGCTCTAATAACATGAAACTCAAGCAATTGTTGGATTCTCAGGTGCGGATTTCCAAACAATGTCCTTGAGTGCTGGCCTAAGCTCTTTGCTGCAGAATTGATTATATTCCAATGTATCACCACAAGCTTTCTTCACCTCCACAACCAGAAATGAAGGTGTCACAGCAAATATATCAGCAGATATTCCCAACTTCCCTTTCCTCCCACTCTCTTGCCCCTGCAATCTAACACTAGAATCACTCCTTTTCAAGCTGAATTTCGACGTTTTAGCTACTTCCTCGAGCTTCGAAATCACACTACTAGCTGGCTTTGTTGTTGCAAATCTCAACTGTTCCTTCTCCTTCTTCTTCTTTTCCTCAAACAAAGGAGACAAATCAAACCCCTCCGACAATGAAATGATATGAAAAGCATTCAAAGACTCAATCTTTTTCGCCTTCCCTACACAATCTTCGTCTCCCACATGAGAAAACTCTTCCTCCACCTTACTCCTCAAAGTCCTTGGCACAGTCTTCTTGAACCAATTAGACTCCATAATCTTTGAAGCAGTAATTCGAGTTCTCGGATTCGGATCCAACATCTTTACAATCAACTTCTTTGCATCAGATGACATCCAAGGTGGACACTTGAAATCACCCTTGTGAATTTTCTTATACATAGCCATGATATTATCATCTTGAAATGGTAAAAAACCAGCTAAAAGCACATAAAGAATCACTCCACATGACCAAATATCTGATGTTGCACCATCATATCCATGATTACCAAGTACTTCAGGGGCAACATAAGCAGGAGTACCACAAGTTGTATGCAATAAACCATCTTGCCTTAAATGATCAGTAAAAGCACTAAGTCCGAAATCGGTTACCTTAAGATTGCCTTCTTCATCTAACAGCAAATTCTCAGGCTTTAAATCTCTGTGATA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTA--AAAATTCATTTACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GAATTCAAGA-ACATA-TTCAGAGATG-AGTCTC-ATTTCAATTCT-AACATAACCAGGAAC-AAAACT-AACAAATNGCAA-TGCTTTAATAACATGAAACTCA-GCAAATGTTGGATTCTCAGGTGCGGATTTCCAACAAATGTCCTTGAGTGCTGGCCTAAGCTCTTTGCTGCAGAATTGATTATATTCCAATGTATCACCACAAGCTTTCTTCACCTCCACAACCAGAAATGAAGGTGTCACAGCAAATATATCAGCAGATATTCCCAACTTCCCTTTCCTCCCACTCTCTTGCCCCTGCAATCTAACACTAGAATCACTCCTTTTCAAGCTGAATTTCGACGTTTTAGCTACTTCCTCGAGCTTCGAAATCACACTACTAGCTGGCTTTGTTGTTGCAAATCTCAACTGTTCCTTCTCCTTCTTCTTCTTTTCCTCAAACAAAGGAGACAAATCAAACCCCTCCGACAATGAAATGATATGAAAAGCATTCAAAGACTCAATCTTTTTCGCCTTCCCTACACAATCTTCGTCTCCCACATGAGAAAACTCTTCCTCCACCTTACTCCTCAAAGTCCTTGGCACAGTCTTCTTGAACCAATTAGACTCCATAATCTTTGAAGCAGTAATTCGAGTTCTCGGATTCGGATCCAACATCTTTACAATCAACTTCTTTGCATCAGATGACATCCAAGGTGGACACTTGAAATCACCCTTGTGAATTTTCTTATACATAGCCATGATATTATCATCTTGAAATGGTAAAAAACCAGCTAAAAGCACATAAAGAATCACTCCACATGACCAAATATCTGATGTTGCACCATCATATCCATGATTACCAAGTACTTCAGGGGCAACATAAGCAGGAGTACCACAAGTTGTATGCAATAAACCATCTTGCCTTAAATGATCAGTAAAAGCACTAAGTCCGAAATCGGTTACCTTAAGATTGCCTTCTTCATCTAACAGCAAATTCTCAGGCTTTAAATCTCTGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707150" ref_strand="+" ref_description="SGN-E707150 [FA32AG10]">
      <seq>ctctcagagatttaaagcctgagaatttgctgttagatgaagaaggcaatcttaaggtaaccgatttcggacttagtgcttttactgatcatttaaggcaagatggtttattgcatacaacttgtggtactcctgcttatgttgcccctgaagtacttggtaatcatggatatgatggtgcaacatcagatatttggtcatgtggagtgattctttatgtgcttttagctggttttttaccatttcaagatgataatatcatggctatgtataagaaaattcacaagggtgatttcaagtgtccaccttggatgtcatctgatgcaaagaagttgattgtaaagatgttggatccgaatccgagaactcgaattactgcttcaaagattatggagtctaattggttcaagaagactgtgccaaggactttgaggagtaaggtggaggaagagttttctcatgtgggagacgaagattgtgtagggaaggcgaaaaagattgagtctttgaatgcttttcatatcatttcattgtcggaggggtttgatttgtctcctttgtttgaggaaaagaagaagaaggagaaggaacagttgagatttgcaacaacaaagccagctagtagtgtgatttcgaagctcgaggaagtagctaaaacgtcgaaattcagcttgaaaaggagtgattctagtgttagattgcaggggcaagagagtgggaggaaagggaagttgggaatatctgctgatatatttgctgtgacaccttcatttctggttgtggaggtgaagaaagcttgtggtgatacattggaatataatcaattctgcagcaaagagctaggccagcactcaaggacattgtttggaaatccgcacctgagaatccacaattgcttgagtttcatgttattagagcaattgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="123443" stop="124972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123742" g_stop="124672" g_length="931"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="929" r_length="929" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E707150" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>931</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123742" e_stop="124672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTG</genome_strand>
        <mrna_strand>CTCTCAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGC-TAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCC-ACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713644" ref_strand="+" ref_description="SGN-E713644 [FB09AH03]">
      <seq>ggaaggcgaaaaagattgagtctttgaatgcttttcatatcatttcattgtcggaggggtttgatttgtctcctttgtttgaggaaaagaagaagaaggagaaggaacagttgagatttgcaacaacaaagccagctagtagtgtgatttcgaagctcgaggaagtagctaaaacgtcgaaattcagcttgaaaaggagtgattctagtgttagattgcaggggcaagagagtgggaggaaagggaagttgggaatatctgctgatatatttgctgtgacaccttcatttctggttgtggaggtgaagaaagcttgtggtgatacattggaatataatcaattctgcagcaaagagcttaggccagcactcaaggacattgtttggaaatccgcacctgagaatccaacaattgcttgagtttcatgttattagagcaattgcatttgtttagtttttgttcttgttattgtttagatttgaaattgagacttcatctctgaagtatgtctcttgaattcatctgttagattgaatttgtttagtttttgttcttattcttgttgtttagtgatgtgttcttgaaattgagacggtgtctcttgaatcgtttagttctattcttgttattcagatatgttcttgaaattgagactggaatctcttgaatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="123925" stop="125197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124225" g_stop="124896" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E713644" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124225" e_stop="124896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGATATGTTCTTGAAATTGAGACTGGAATCTCTTGAATCAC</genome_strand>
        <mrna_strand>GGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGATATGTTCTTGAAATTGAGACTGGAATCTCTTGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713613" ref_strand="+" ref_description="SGN-E713613 [FB09AE06]">
      <seq>gcaagagagtgggaggaaagggaagttgggaatatctgctgatatatttgctgtgacaccttcatttctggttgtggaggtgaagaaagcttgtggtgatacattggaatataatcaattctgcagcaaagagcttaggccagcactcaaggacattgtttggaaatccgcacctgagaatccaacaattgcttgagtttcatgttattagagcaattgcatttgtttagtttttgttcttgttattgtttagatttgaaattgagacttcatctctgaagtatgtctcttgaattcatctgttagattgaatttgtttagtttttgttcttattcttgttgtttagtgatgtgttcttgaaattgagacggtgtctcttgaatcgtttagttctattcttgttattcagaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="124148" stop="131266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124448" g_stop="124858" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124859" i_stop="131048" i_length="6190">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131049" g_stop="131074" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="437" r_length="26" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E713613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124448" e_stop="124858"/>
          <exon e_start="131049" e_stop="131074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGATATGTTCTTGAAATTGAGACTGGAATCTCTTGAATCACATCTCCTGAAATTGCGTGTTTGAGTGATTGAATCGTTTAGTTTTGTTCTTGTTCTTGCTGTTAGATGTATTCTTGAAATCGAGACTTTGTATGTCTCTTGAGTTCATGTATTTGAGCGATTGAATCATTTGGTTTTGTTCTTGTTGTTTGATGTATTCTTGAAATTAAGATGGAATCTATAGTATGTTTCTTGAATTCATGTGTTAAAGAGGATTGAATTTGTTCAGTTTTATCCTTGGTTCTTGTGGTAGTAGGACCCAAACCACTATAATATCTTCATCCTTGCAAACCCCATATGCTATCATATTTTGACTAGGGCCCTACTTGTGTTTTCATACACATGGGAGTTACCTTATCTTTATCAATTTGTCCCTTCATTACAAAAAGTAGTCAAATTTGGTGACCACTATTTGGTCTTCGAGTGGGGTGAAGTCGTAACAAGATAGCCTGTATGTGAACTTGTGGCTAGATTGAATCCTTTGCGATGAATGGACATGTATTGTTGAGATTGTGACTGAATTCTGAAGGTCTCTAGAATACATGTGTTAAGAGAACATAGTAAAGATTGTATATATGTTAGCAGCTTGTAAAAGGTATATTGGCTTCTTGAGAATTGGTTGCTCATTTTCTAATCGGTGTTTGATATCTATATTGGACCCCGAAAAGATAGCTTAATGTCTTTTGTTTTTTTATCTGGTGTGTATTATCCACTTTGTTGGTATGATGGCAATTGCTTTTCTTTGTTAGGCCATGGCCTGATAATTCAACAGCACTTTTAACCTATCCTCACTTTGTATCCATTATTGACACTATTATAAACTTAACGTCAAGAATTTTTTGAAAATAATCTCTTTTGTTTCGTTAAGATAGGTTAAGTTTTGCACGTACTCCATCCTTTTCAGACTTCACTTGAGGGAAAATAAACAAAGCGCTAAAGATATTTCATGTGTTGATGGAAAGTAGCAAAATACTTCGTAAAATTAGTCCATTCAAAGAAATGAAAATAGGAAACAAGGGGAAAAAAATATACCTATGAATTTATATGACTTAGAATACAACAATAATAAAAAGTTACTCATCAAGAACACTTGAACAACACACACCAGTTAAATAAGAAGTGAAATTTGACATACAACTCACAATCTTATCTGTAAATTGGATCATACACTATGTTTACGAGTAGAGGTGAATTCAAAATTTAAAGATATTCAATGAACGAACATACATGATTTGCTCCAAAGTAACTCAAACCCGTACTTCTCATGCTAGCTCCGTCCCAAAGGCCTATCCAGGCAAGAGAACCAGACTACAGAAACTCCCCCAGCCTCATTTATACCAAGCTCCGCGCAACATTGGATATCTTACTCATTGATCTCTGTAAGTACATTCATCTGCATTGCACGTCTTCTATACATTGACGAAGCTCTGGAGACCAATTCGAGGTGTATGAGTCAGTTAAGACTACAGATGCTTGCACCTGGAATAACAGTAAAAATGTTACACTAAGATTTGCAGCAACTAGTATCAAGCGTTGTCAATGAATAAAGACTCGCGATAAAATTAAGGCTCTTTAGCTGAGAAATGAATGAGGGAATTGTTCGGATGGTTAGCCATCATAGTGTAACTCCTATAAATTCACTAAAAGTCTCACATCATCTGATGCTTTTTCGAGTCTAGAGCACCCGAATACTGTTCTTAAGACACTTCTATCTAAAATTACAGCTTGGAAGATTGTCAAGATGCTTGCAGTTAGAACTCAATAGATTCGACTAGTTCTCCCAAAACGATTCATTTCTTCTTCTATTTTTTCAGCAACTTTACGAGTTTTAAGCAGCTTGATAGAATCAAAACCTCAACACTTTAAAGATTATGAGTACCTGAAAAATCCGGGGTCCTTAGTAGCTTCTGTGATTGGAAAAGGTTGACGAAACAAATCAACCTTACTACAACCTGTCACAGTGAAACAAATCAAACAGCAAGAAAGCAAAACAGCCGGATAATTAGTACTCCGACTATATATAAATGTTGGAGCCTTGCCAAAGTTGTGTAAATCGGCTATCTTTCAACTTCAAACCAACAAGCTTTTCTCCCCCATATCCAACTCAACTCAACACGATGAAAATCAGGACGTTGACGATCTGCACTACAAGTTCAGTCACATGCCTTCGATCTTTTCAACGCCCTGATTATTAAGAAAGAACGAAAAGGCAAGAAAGAAAAATGGAGAAACAAGTATGAGTATGGATATTTATTAAGTTACATCATACATCAGCTGTTGCTTGAACTAATAACTTATTAGAAATCATCATTTGTGCACTATGTTGCTCAGACTCTCCAAAGTTGATGCCGCAAACGTGTTGGATCCTCCGAAAATACACTACTTTTGGAGGATCCAACAGGTACCTGCTACTCTTTTTAAAGAGTCCGAGCAACATAGTTTGTGTAAACACTTACCAAATCTCCTTTAACAACCTACTATATCTTCTTTAATCATCCGAAACATCTTGTTGAATAATATACCAACCGATTTCTCATAACCAAAGAGTATAAAGACTAAGTTTTGAAACTGAAAGAAGCCCTTATAGGAATTAAAGCTTCGTCAAGACCATGGATTTCAACTTTTACCATTTATGCACATAAGAACACTTTTTGATAAACAAGATGGAAACGGAGGTATTCTCGTCCTTTTTGCTCATGTTGTCTCCTATGGAGATCGATTGATACGGGTTTTCTACTTTCTTATAACCTTTTCATTTCTGCTCAACTGTTCAACGAGCGCTATAATGATCCAATGGAATTTCTCCTGGCTCAACACTAGTCAACATTGTGTGGTGTCACATACCATGTAAACGACAACCACAACTATCAATAATTTCACCAAGGGTACGGTGTGCTTAATTGTGGTCAATAAAGTGAGAGGAGAACTACGAGATCTCAGGTTCATACCTCCGTGGAGGCAAGGTGTTTTGCTCTCATTTGTTAAATCTTGGTGGACAAAGTTACCCGGTGAGCTAGTACATATGTTGGTGAAATCAAGCAAGTGATGACAGTAATCACATATCTTCAAATATCTTAGCATTGGACTCATGAAGTTTATACAAGCTAGATACAAGAAAACTCTAAAGCAGAATAGCATGTCACGAATGAAATCGCACAAGCAACAGTATATGATCGCAAGAGTACCACTGGCTACTATTTCATGGAAGACACAACAACAATATATCATCGATACAATATTCTACGTAATCCGGAAGCATCAAGAAGAAAGAAGTAGAATTCACTTCAAGTAACTATGATCACTTCACTGACATATTTAGTAAGGCATTGAAGTAGAGGGCAAGATTTAGTTGATTCTTAATGCTATATTTGTTCAATCAAAACCAAATCCCCAAATTTTTAATTAGTCAAATTAGATCTATCTGGAGTCTGAACAAAGTAATCACTAAGAAATGCGATACTACTGAATCAGACCGAACCATGAACATCCTTAGACACGAGAAATGATAACTATGTTATTTCTTCAGGAGGAAAGCTATTATATCATGAATGAAGTAACAAAATCAATCCAAGGTCCTATTTCATTCGAAGATGCATCGATAAGAAAGAATTCAAACTCATTTATATCAAGACTTTGATCAAGTAAGTCATATATTTTCTATGGCTAACAAGATTTTCGTCTTTTGATGAAGTCCCAAGCTAAGACGGAAGTTTAACAAATGAAGTAGATTAATTTAATTTACTTTACATTTTTCGGTTCATTGGAGCAAATCAAGCAAGAAGAGGAAATATCAACTCTACATATGTTTCTTCCTTCTAACCTTCTACTTTTTACCATTTCCCCTCCGCGATATTTTAGGGAGAATACTTTCGAGTTGGACTTTATATATATCGTATAGTGTATTAGTTTGATTATTCAAAGCCATTATATAGATCTTTTAAGTGTTTTGCAGGATAACACTTACTTAAAGAGTACATAAGAACTTGGATGATTGATGGAAGAACGTACTCTTGACTCATCGATATGTCAAAGGTGATTAAATCAATTATAGACTATTGACTTTCTCCATATTTTCGAACTTTGTTGGCAAATGGCAACACTGAAAGGGGTGAATCAAATGAGTACTACTGGTTTTGTGTTTCTTATGGAAGACTCGACATTTACTTTGTGTTCAAACAAGAAACTCTTCGAGTGTTTCTACTTTCAAAGATAATAATGTCCCATTTAGCCTCATTCATAGTGCAATTTGAGTTCAGAAATTGTTGGAGACTCTACATATTGTCACAACAAATCAAAACCTTATCATATTATGTAGAAAATAACTCTAATATTGCTTTCGGAGAAACCTACCTTATATGAACTGAACGTAAGCACGTCACTGCAATGTTTCATTTCTCATTTGAAAGCATCAATAAGAAGGAAATAGAATCACTTATATAAAAACTATGATCACGTAACTTAATAATAACCTATACAGATACATCTATTTAACAACAGGTTCATCTGAACACAATACTTCCTTACGTGTAAAAACTACAAAGGGTTCAATGATAAAAATCTTAAACAGGCTGAACCTAGAAAGCTTACATCCTGAATCTTTCTCCGCGTCTACTCCAAAAATTGCTTTTCTATGCAAAATGCTAATACTAGGTCCTCGCGAAGTCCCCCTATGTAACATATCTCTCGATTAATTTCGAAAAGATAACATCTTTACTGCCTCAAGTTACAGTAACACATCTCTATGGTATCACTAATTCCACCAAAAACAAAAATCCCCAAATCTTGACTACTCAAAATAGATCTGTTTGAAACAAAGTTATCACTTCATACCCAATCACCCAATATCCAAAGATACAAACTTGAAACTAACCGATATCATTAAGGATTATATGATATGCTTGAACTCTTCAAGAATGTCAACGAGTGCGTGTCAGACATCACTTTTAAGGGATTCGACACGAGTACAACAACATAAATAGAAATTCCAAGCTATATAGCCAAAAACACAACATAACCATTAGAATTGAAACCTAAACCACATTATATGATATGCTTGAACTCTTCAAAAATGTCAACGCGCGCGTGTCAGACATCACTTTTAGGGGATTCGACACGAGTACAATATAACATTTTTGGAAATTCCGAGCTACATAGCCCAAAACACAATATAACCATTAGAATTGAAACCTAAACCACATTATAAACTTCAAAATTTATCAAATACAAACAAAACCTCACAATTTGAAAAAAAACTCCTAACCTGTAAGAGGAACTTTTTCAACTTCCATTGATAGCAATATTCAAAGTTGTAATCTTTACTAATTTTCTTCCTTGCCCTCTACAAAAGAACCAAAAAAACATATATAATTACTTCATAATATTGAGACTAAAGTAGCTCATCAAAACCTACATAAAATATAACATGATCCCACATATAAAAACTAAGCAAATCCTTAGCATTTCAATAAACAAATCAACTTACAACACAGATTTCATGTCATCCTACATACAAGTGTCGGTGGCGGCTCCAGAATTTTCACAACGAAGTTCAAAATATGAAAAGTAAACATTCAAAGATCCAAAATATATATATATATATATATATATATATATATATATAATATGCATAAAAGATAACTTTGATCACATATATAAATACTATAATTTTTCACTAAAAAAGATTCGAATATACCCTTTTTCCCTACTTTACTCCGTGAATACTCAGTGTAACTCCACGAATGAAACTCTACAAAAAAATAGATGCAAGGAAAATCTCACCCTAATTAACTCTGTAAAAGAAAATAGAGATTGGTTTTTAATACCCCCCTCCATTTCAATAAATATCAAAATTAATTTCTCAAAATATAAATAAAAAATATTAAATTTTTTGCCGTTTTTTTTTTTCCGGATATAAAAGAAAAAACAAAAAAAAAGGAATTACCCTTTACAAATTCCATAAAAACCCCCAAAGACTGGGAAAACCTTTAACTTTTTTCTTTGATTTTGCGTTTCTTTGCTAAAATTATTTTTTCCCCAAAAAAAAAAAAAAATAAACTAAAAAAAAAAAAAAAAAAATTTAAAAAACCTTTGGAAAAAATGAAAAAATAATTTTTATTTATAAAAAAAAAAAAATTTTTTTTTTTCTCCTATAAACAAAAAAAAGTAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>GCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275368" ref_strand="+" ref_description="SGN-E275368 [cLEN-10-A14]">
      <seq>cgtattggaggaagaaatcgacgagggaaatgataagagaagtgttgaagttaaagaaattagagtgcaagaacagaataagcttaaaaagattgtgattgaagagaagagatttcagtacaataataaaaggcaaatgccaattacttcaattaatatgaaacagtcacctcctactttaggcaatgctaatattcatcaaagtgcaacaagaaccaaatcaggtaaaatgcttgcatttctttttatgttttgcttcattcaattttgctcgtattctctataaatgttgttgtacacgtgttgcatcatccttaaatgcgctacttgacctacgtttcattttgactctttgttttcaaagcttgattctgaattcctcttttgcatcttgttgcattttcagatgaattccagtctaaacaacatagcaaactacaaagcttggttgatttagtgatgtggagaaatgtatcaaaatcagcattagtctttggaattggaacgtttgtaatcatttcatcttcatatactcaagatctcaatatcagctttatttctgcgctcgcctacttgggtctgatctatcttgctgcaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133303" stop="135268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133603" g_stop="134050" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134699" g_stop="134801" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="551" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134916" g_stop="134968" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="604" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E275368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133603" e_stop="134050"/>
          <exon e_start="134699" e_stop="134801"/>
          <exon e_start="134916" e_stop="134968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGGGTGAGTTGAATCTCTTAATATCTTTTTTAGAACTCAATGTTATACCGTATCGGCGGTAAAATTTATTTGTATTCTATATTTACACTAAATCAATGAATGCATGACATGTGTCTTTCATATGCACATTTTTCACTTGAATTTCAAGCTACTTGCGCCTATTATTTATAGGTCCAATGCCCTTACCGCTTACTCTATTAAAATGTTGGGGAAGTGTTGGGGAATTACCGGTATTCAGTACTAGCAGAGTTAAAACTGCTCATAGCTTTCGGACTTTGGCATTTCCTATTGCTCATATCCCGAAAAGACTGACCTCAATAATGTTTGCAATCATACCTTAGTTCAAGATCTACATACAAATATGTAGGACGAGATAATCTTTTCAAAGAAAAAGGAAACTAAACAATGAAAATTCACTTCATTAGTATTTCCGCTTACACAAATGTTGGAGCGAGAACAGGCACTTACTTTTGACCAACTCACTCACTTGAACTGGCCTAGGATAATTCGGAGGGGAAGTGTAGTATGTAACTCACTTTAATTTTTAATTGCTCAAGTTAAATTGGTTTTAGTATAAACATCATGTCCGTCGGGGTAAGTAACTACGCTACAACTATTAGCTCTGATTTCCTGTTAAAACATTTTCTGCAGTTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAGGTAATTAGGACCTTTAACTCAAAAAAAAACAAATCAGGTTTCTATTTCTTAATTCTTGAATCATTTTAACACAATATATTGAAGTGAACTATTCTTAATAATGGTGTTTTACAGCTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</genome_strand>
        <mrna_strand>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG..................................................................................................................CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706866" ref_strand="+" ref_description="SGN-E706866 [FA31AF06]">
      <seq>ggaggaagaaatcgacgagggaaatgataagagaagtgttgaagttaaagaaattagagtgcaagaacagaataagcttaaaaagattgtgattgaagagaagagatttcagtacaataataaaaggcaaatgccaattacttcaattaatatgaaacagtcacctcctactttaggcaatgctaatattcatcaaagtgcaacaagaaccaaatcagatgaattccagtctaaacaacatagcaaactacaaagcttggttgatttagtgatgtggagaaatgtatcaaaatcagcattagtctttggaattggaacgtttgtaatcatttcatcttcatatactcaagatctcaatatcagctttatttctgcgctcgcctacttgggtctgatctatcttgctgcaatctttctctttagatccctcattcacaggagagccgttgatgttggtgaatcaagcgaatgtgtagtagaagaagaagaagtaatgtggatactgaaattgatacttcctttaataaatgagtttcttttgaaaatcagagcccttttttctggggatccttcgactacaatgaagatggcggttctgctgtttcttttggctaagttcggcaactatataactatttggaaactgtataaattgggtttttttggagttttcgtcataccaaaagtttgctcttcttattcgacacagttaacttctcacggtacattttttataagatacattagagatgcttgggaatcatgtactcacaaaaaggctattggatttgcaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0180O10-FFemj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0180O10.1" temp_strand="+" temp_description="C12HBa0180O10.1  AC216346.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0180O10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133309" stop="137372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133609" g_stop="133826" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133827" i_stop="134008" i_length="182">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134009" g_stop="134050" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="260" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134699" g_stop="134801" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134916" g_stop="134990" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134991" i_stop="135424" i_length="434">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135425" g_stop="135572" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="586" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135573" i_stop="136115" i_length="543">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136116" g_stop="136185" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="656" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="136186" i_stop="136331" i_length="146">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136332" g_stop="136397" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="722" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="136398" i_stop="136996" i_length="599">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="136997" g_stop="137072" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="798" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0180O10.1" gen_strand="+" ref_id="SGN-E706866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0180O10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133609" e_stop="133826"/>
          <exon e_start="134009" e_stop="134050"/>
          <exon e_start="134699" e_stop="134801"/>
          <exon e_start="134916" e_stop="134990"/>
          <exon e_start="135425" e_stop="135572"/>
          <exon e_start="136116" e_stop="136185"/>
          <exon e_start="136332" e_stop="136397"/>
          <exon e_start="136997" e_stop="137072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGGGTGAGTTGAATCTCTTAATATCTTTTTTAGAACTCAATGTTATACCGTATCGGCGGTAAAATTTATTTGTATTCTATATTTACACTAAATCAATGAATGCATGACATGTGTCTTTCATATGCACATTTTTCACTTGAATTTCAAGCTACTTGCGCCTATTATTTATAGGTCCAATGCCCTTACCGCTTACTCTATTAAAATGTTGGGGAAGTGTTGGGGAATTACCGGTATTCAGTACTAGCAGAGTTAAAACTGCTCATAGCTTTCGGACTTTGGCATTTCCTATTGCTCATATCCCGAAAAGACTGACCTCAATAATGTTTGCAATCATACCTTAGTTCAAGATCTACATACAAATATGTAGGACGAGATAATCTTTTCAAAGAAAAAGGAAACTAAACAATGAAAATTCACTTCATTAGTATTTCCGCTTACACAAATGTTGGAGCGAGAACAGGCACTTACTTTTGACCAACTCACTCACTTGAACTGGCCTAGGATAATTCGGAGGGGAAGTGTAGTATGTAACTCACTTTAATTTTTAATTGCTCAAGTTAAATTGGTTTTAGTATAAACATCATGTCCGTCGGGGTAAGTAACTACGCTACAACTATTAGCTCTGATTTCCTGTTAAAACATTTTCTGCAGTTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAGGTAATTAGGACCTTTAACTCAAAAAAAAACAAATCAGGTTTCTATTTCTTAATTCTTGAATCATTTTAACACAATATATTGAAGTGAACTATTCTTAATAATGGTGTTTTACAGCTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAGGTATTACATTATAAAAGTTATTTAAATTACATGCATTAGCAGTGTAATTTTTTTTTATACTATCAATGTAATTTAACCGGTTATAACAAATTATTACCGAATTTTGTTGGTTCATATCATATTTTACATTAAGAGTTTACCTATTGTTATAAACTATGTTGTTCGGTGTCTCAAAAAAAGTTGTGACAGTCGTGTATGATCCTTAAAAGTTTACTACTTTTGGAGGATTCAACACACATTCATTGACTTTTTTGAAGAAACCGAACAATGTAGGTTATAAGTCTTTTAATCCGATGGTATCAAAAACATATACACCATCAATGCACAAAATCAAGTTCAGTGTCTAATTACCATCTCTTGAGATTATCCAATAACCTCTGTTTAGCATTCAATTTGACTTTTATATTATCTCCCCTTTTTGTGTGTGTAAATAGGAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAGGTAAAGAAAAGTTCATACATTTCCATTTGATTTCAATGTCCAATATAGTTTCTTTATTGTCCGCACTTGATGTTTACGCCAAATCATTATTATAGTGATTTGATGATGCCAACTTGTGCGTACGTCAACTAGTTACACGAGGTACCTGCAACCTTCCACCAACATAGGTACCGAGTAACTCAACTGACCATAGGAATTTGAGCTTGAGATTTGGTAGCTGTCAAACCATTCAGAAAAAAACATAAATTAATCATGGTTAAGTAATAGAAGTTATGTTGCCTTGACTCTTCAAAATGCACTTAGTCCATGATACATACTCCAAAACTAGTGCATTTATGGACGATCCAATACGGGTGTAAGAACATATTTTGAAAATTCGAGTAAACATAGGATAGAAGTCTATGTGCCTAAATATATATCATGTGTCTATTGGTCAATATAAATATCAAGTGCCGGTAAGTTTTATTGTTTTCCCATGTTACTTCAATTATTTACCTAATCTTGTGAACTTGCGGGAATTTGACAAGATCTTACCTCTGGCAGATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGGGTGAGAATTTTCTCTAAATTTCATATCTATAAGCAGTTCAAATAAAAATGACTTGTTCTAGTTTTTTCTTTTTGATCTTTCAGCAGACGATCATTACGAAAAATTATGCAATATGATATGAAGCTTATTGAATCCCTATTTTGCAGGTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACGGTAAGAAAGGAAAAAACTATCAATATATCCCGTGTAATCCCATAAGTGAATCTAGTGAGGTAGGATGTACGTAGAGCTTACCTTCTTACCCCTATCTTTGTGGGATAGATAGCCTGTCACCGTTATAGTTATAATTACTCAAAAAATCCATCATAATCTTAAAAAGTCTATTCAGAAAACTACAACTTTGGTTTGATAGTGAATATCACTATTTTTTTTTAAAACTTCATGTATGTTTTGGATATAATACCGTTGGTGTGGGGCTAATTTGCCATAAATCATTATCAAATTTTGGCAGTTTTTGTCACAAGTATGCAGAGGCAGTACAACATGTAGGGCTTTTGCTATATATAACCAAATTTTGGAACATCTAATAAAGTTATAGTACACGGTGCGCGGAACATCATTTTTTGTTTTATGTTGGCTCATTTATATGTTAAACCAGAGTCAAGGGTCTACCAGAAACATTCTCTCTGCGTACATCATACCATTTTTTCAGACCCCACTTGTTTGATTATATTGAGTATGTGGTCGTCGTTGTTATGTTATATGACCAATTAATAATATTCAATATTGTGATTTATAATTTTTATGTGAAGGTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</genome_strand>
        <mrna_strand>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAG......................................................................................................................................................................................ATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG..................................................................................................................CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGG..................................................................................................................................................GTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>388</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="42500" PGL_stop="42051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42500" e_stop="42051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="42500" e_stop="42051" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42500" stop="42348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42499" stop="42051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGGAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCGCAATTGTATAATTCGTTGGCCTTTTTCTCGGCAATTTTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGTTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATAGAGAGTGGCGAGCGAGAATTCTGAGAGAGAGACGCTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTTCATTTATTTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  G  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  I  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  A  I  V  *  F  V  G  L  F  L  G  N  F  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  V  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  R  E  W  R  A  R  I  L  R  E  R  R  *  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  T  I  S  F  I  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  E  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  F  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  I  E  S  G  E  R  E  F  *  E  R  D  A  D  K  F  *  L  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  F  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  R  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  Y  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  R  N  C  I  I  R  W  P  F  S  R  Q  F  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  *  R  V  A  S  E  N  S  E  R  E  T  L  T  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  N  Y  F  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="50437" PGL_stop="55599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53605"/>
            <exon e_start="54346" e_stop="54366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.038" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52723" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52898" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52905" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53019" stop="53205"/>
              <exon start="53305" stop="53583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53051" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53070" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53073" stop="53205"/>
              <exon start="53305" stop="53583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53077" stop="53205"/>
              <exon start="53305" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53078" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53095" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53095" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53116" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53116" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53120" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53127" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53128" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53130" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53142" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53143" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53161" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53189" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC : ACAAACAAATTGAAACGAAAG</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L   : H  K  Q  I  E  T  K  </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  :  T  N  K  L  K  R  K </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T :   Q  T  N  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
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            <exon e_start="53018" e_stop="53205"/>
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            <exon e_start="54346" e_stop="54366"/>
            <exon e_start="55591" e_stop="55599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.070" e_score="0.667"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52605" e_stop="52778" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52866" e_stop="52926" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53018" e_stop="53205" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53305" e_stop="53581" e_length="277"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53582" i_stop="54345" i_length="764"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="54346" e_stop="54366" e_length="21"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.070">
            <gDNA_intron_boundary i_start="54367" i_stop="55590" i_length="1224"/>
          </intron>
          <exon e_serial="11" e_score="0.778">
            <gDNA_exon_boundary e_start="55591" e_stop="55599" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50437" stop="50862"/>
              <exon start="51325" stop="51465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50630" stop="50862"/>
              <exon start="51325" stop="51605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50651" stop="50862"/>
              <exon start="51325" stop="51594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50653" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50656" stop="50862"/>
              <exon start="51325" stop="51379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50666" stop="50862"/>
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              <exon start="51812" stop="51831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322630" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50666" stop="50862"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357992" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50669" stop="50862"/>
              <exon start="51325" stop="51603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50669" stop="50862"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324162" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50670" stop="50862"/>
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              <exon start="51812" stop="51930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328729" strand="+"/>
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          <PGS_line>
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              <exon start="50670" stop="50862"/>
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            <referenceDNA id="SGN-E328498" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E328500" strand="+"/>
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          <PGS_line>
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              <exon start="50670" stop="50862"/>
              <exon start="51325" stop="51672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50670" stop="50862"/>
              <exon start="51325" stop="51671"/>
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            <referenceDNA id="SGN-E325687" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E330165" strand="+"/>
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              <exon start="50691" stop="50862"/>
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            <referenceDNA id="SGN-E312017" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E325332" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E324791" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50718" stop="50862"/>
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          <PGS_line>
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              <exon start="50724" stop="50862"/>
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            <referenceDNA id="SGN-E318336" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E325617" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52306" stop="52317"/>
              <exon start="52388" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52306" stop="52317"/>
              <exon start="52388" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52392" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52404" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52479" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52481" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52481" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52484" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52665" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52672" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52691" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52723" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52898" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52905" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53051" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53070" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53072" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54366"/>
              <exon start="55591" stop="55599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53074" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53077" stop="53205"/>
              <exon start="53305" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53078" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53081" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53095" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53105" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53120" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53123" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53123" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53128" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53130" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53150" stop="53205"/>
              <exon start="53305" stop="53581"/>
              <exon start="54346" stop="54366"/>
              <exon start="55591" stop="55599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAA : ACAAACAAATTGAAACGAAAG : AAATAAGAA</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *   : N  K  Q  I  E  T  K   : E  I  R  </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  :  T  N  K  L  K  R  K  :  K  *  E </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K :   Q  T  N  *  N  E  R :   N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53691"/>
            <exon e_start="54524" e_stop="54572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52605" e_stop="52778" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52866" e_stop="52926" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53018" e_stop="53205" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="0.961">
            <gDNA_exon_boundary e_start="53305" e_stop="53691" e_length="387"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53692" i_stop="54523" i_length="832"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="54524" e_stop="54572" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50437" stop="50862"/>
              <exon start="51325" stop="51465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50630" stop="50862"/>
              <exon start="51325" stop="51605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50651" stop="50862"/>
              <exon start="51325" stop="51594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50653" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50656" stop="50862"/>
              <exon start="51325" stop="51379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50663" stop="50862"/>
              <exon start="51325" stop="51730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50665" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="52006"/>
              <exon start="52089" stop="52317"/>
              <exon start="52388" stop="52514"/>
              <exon start="52605" stop="52778"/>
              <exon start="52866" stop="52926"/>
              <exon start="53018" stop="53205"/>
              <exon start="53305" stop="53662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50666" stop="50862"/>
              <exon start="51325" stop="51730"/>
              <exon start="51812" stop="51831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50666" stop="50862"/>
              <exon start="51325" stop="51592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357992" strand="+"/>
          </PGS_line>
          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E225374" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGCGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTT : CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L  R  M  S  D  R  D  Y  I  H  S  S  I  V  T  W  R  *  K  R  Y  I  F  V  L  L  L  D  D  F  :  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  V  C  L  I  E  I  I  F  T  L  V  S  *  L  G  D  E  R  D  I  Y  L  F  Y  C  L  M  I  F :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T  Y  V  *  *  R  L  Y  S  L  *  Y  R  N  L  A  M  K  E  I  Y  I  C  F  T  A  *  *  F   : S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53605"/>
            <exon e_start="54589" e_stop="54638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.038" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52605" e_stop="52778" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52866" e_stop="52926" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53018" e_stop="53205" e_length="188"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53305" e_stop="53605" e_length="301"/>
          </exon>
          <intron i_serial="9" don_prob="0.038" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53606" i_stop="54588" i_length="983"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53077" stop="53205"/>
              <exon start="53305" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53078" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53081" stop="53205"/>
              <exon start="53305" stop="53605"/>
              <exon start="54589" stop="54638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53120" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53130" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAAAAAAAA</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L   : L  F  F  F  F  F  F  F  F  F  F  F  F  R  Q  K  K </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  :  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  K   </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T :   F  F  F  F  F  F  F  F  F  F  F  F  S  A  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53594"/>
            <exon e_start="54524" e_stop="54586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51325" e_stop="51730" e_length="406"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53019" stop="53205"/>
              <exon start="53305" stop="53583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53051" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53070" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53073" stop="53205"/>
              <exon start="53305" stop="53583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53077" stop="53205"/>
              <exon start="53305" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53078" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53120" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53130" stop="53205"/>
              <exon start="53305" stop="53576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53195" stop="53205"/>
              <exon start="53305" stop="53594"/>
              <exon start="54524" stop="54586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCC : CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S   : P  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  :  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="50437" e_stop="50862"/>
            <exon e_start="51325" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53562"/>
            <exon e_start="54524" e_stop="54563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="50437" e_stop="50862" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50863" i_stop="51324" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
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              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53070" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53078" stop="53205"/>
              <exon start="53305" stop="53554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53141" stop="53205"/>
              <exon start="53305" stop="53562"/>
              <exon start="54524" stop="54563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGACGTAGAATTATGTAGGTATCTACTTATTCAACTTTTGAATAGTTTAAGCACGTACTTGCTTGTGTATATTCAAAATTGAATGACATAGACGCGGTTAAAGAGTAGAGAATGAGTAAAACGTGTTGACATGCAAATATCTTGTTCTTTCTTCCATATAAGTGATGCAGAGAAAGACTTAAGTATACACAACAAATTTTCTTTATTTACAATGGCAACACTAAGAGTTTCTTCATTGTTTGCTTCTTCTTCTTCATCTTTGCATTCTAACCCTTCAGTTTTTACTAAATATCAATCTAGTCCCAAATGGGCTTTTTCATTTCCAGTTACACCCTTGTGTTCAAAAAGAAGTAAAAGAATAGTTCATTGCATTGCTGGTGATACTCTTGGTCTTACTAGGCCTAATGAAAGTGATGCCCCTAAG : ATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCA : CTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  D  V  E  L  C  R  Y  L  L  I  Q  L  L  N  S  L  S  T  Y  L  L  V  Y  I  Q  N  *  M  T  *  T  R  L  K  S  R  E  *  V  K  R  V  D  M  Q  I  S  C  S  F  F  H  I  S  D  A  E  K  D  L  S  I  H  N  K  F  S  L  F  T  M  A  T  L  R  V  S  S  L  F  A  S  S  S  S  S  L  H  S  N  P  S  V  F  T  K  Y  Q  S  S  P  K  W  A  F  S  F  P  V  T  P  L  C  S  K  R  S  K  R  I  V  H  C  I  A  G  D  T  L  G  L  T  R  P  N  E  S  D  A  P  K  :  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  :  L  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  R  T  *  N  Y  V  G  I  Y  L  F  N  F  *  I  V  *  A  R  T  C  L  C  I  F  K  I  E  *  H  R  R  G  *  R  V  E  N  E  *  N  V  L  T  C  K  Y  L  V  L  S  S  I  *  V  M  Q  R  K  T  *  V  Y  T  T  N  F  L  Y  L  Q  W  Q  H  *  E  F  L  H  C  L  L  L  L  L  H  L  C  I  L  T  L  Q  F  L  L  N  I  N  L  V  P  N  G  L  F  H  F  Q  L  H  P  C  V  Q  K  E  V  K  E  *  F  I  A  L  L  V  I  L  L  V  L  L  G  L  M  K  V  M  P  L  R :   Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H :   F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   G  R  R  I  M  *  V  S  T  Y  S  T  F  E  *  F  K  H  V  L  A  C  V  Y  S  K  L  N  D  I  D  A  V  K  E  *  R  M  S  K  T  C  *  H  A  N  I  L  F  F  L  P  Y  K  *  C  R  E  R  L  K  Y  T  Q  Q  I  F  F  I  Y  N  G  N  T  K  S  F  F  I  V  C  F  F  F  F  I  F  A  F  *  P  F  S  F  Y  *  I  S  I  *  S  Q  M  G  F  F  I  S  S  Y  T  L  V  F  K  K  K  *  K  N  S  S  L  H  C  W  *  Y  S  W  S  Y  *  A  *  *  K  *  C  P  *   : D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A   : T  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50554" stop="50862"/>
                    <exon start="51325" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1809</number_coding_nucleotides>
                  <number_encoded_amino_acids>603</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRVDMQISCSFFHISDAEKDLSIHNKFSLFTMATLRVSSLFASSSSSLHSNPSVFTKYQSSPKWAFSFPVTPLCSKRSKRIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="51321" e_stop="51730"/>
            <exon e_start="51812" e_stop="52006"/>
            <exon e_start="52089" e_stop="52317"/>
            <exon e_start="52388" e_stop="52514"/>
            <exon e_start="52605" e_stop="52778"/>
            <exon e_start="52866" e_stop="52926"/>
            <exon e_start="53018" e_stop="53205"/>
            <exon e_start="53305" e_stop="53605"/>
            <exon e_start="54346" e_stop="54366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.038" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51321" e_stop="51730" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51731" i_stop="51811" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51812" e_stop="52006" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52007" i_stop="52088" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52089" e_stop="52317" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52318" i_stop="52387" i_length="70"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52388" e_stop="52514" e_length="127"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52515" i_stop="52604" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52605" e_stop="52778" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="52779" i_stop="52865" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52866" e_stop="52926" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52927" i_stop="53017" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53018" e_stop="53205" e_length="188"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="53206" i_stop="53304" i_length="99"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="53305" e_stop="53605" e_length="301"/>
          </exon>
          <intron i_serial="8" don_prob="0.038" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53606" i_stop="54345" i_length="740"/>
          </intron>
          <exon e_serial="9" e_score="0.643">
            <gDNA_exon_boundary e_start="54346" e_stop="54366" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E226880" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E234222" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E225374" strand="+"/>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATATCAATTGGTGCTAAAGATACTGCTGTGGTGCAATGGCAAGGAGACTTACTTGCAATAGGCGCGACGGAGAATGACATGGCTAGAGATGAGAATTCTAAGTTCAAGAATCCACTATTGCAACAGCTTGATTCCGAATTGAATGGTTTATTGTCTGCAGCTTCTTCTGAGGAGGATTTTAGCGGAAAGTCTGGACAATCCGTAAATCTCAGGTTTCCTGGTGGAAGGATTACTCTAGTTGGTCTTGGCTCATCAGCATCATCACCTACTTCTTATCACAGTTTAGGACAGGCTGCTGCTGCTGCTGCCAAGTCTTCTCAGGCTCGTAATATTGCCGTTGCACTTGCTTCCACCGATGGACTCTCTGCAGAATCGAAGATTAACTCTGCCTCTGCCATAGCAACTG : GAGTTGTGCTAGGGTCATTTGAAGATAATAGGTTTAGGTCCGAGTCGAAGAAATCAACTTTGGAATCTTTGGATATTCTTGGACTGGGAACTGGACCTGAAATAGAGAGGAAAATCAAGTATGCAGAACATGTATGTGCAGGTGTTATACTCGGTAGAGAGCTCGTTAACGCACCAGCCAATATAGTTACGCCTG : CGGTACTTGCTGAAGAGGCTAAAAAGATTGCGTCCACTTATAGCGATGTCATTTCTGTTAACATTTTGGATGCTGAGCAGTGCAAAGAATTGAAAATGGGAGCCTACTTAGCTGTTGCTGCAGCAGCTACTGAAAATCCTCCTTACTTCATCCATTTATGTTTTAAAACTCCTACTAAGGAACGCAAAACAAAGTTAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACCTCAAGGTCGGAGCTGGTTCGAGGATTGAGCTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAGCTCTTGGTGAAATTAGGCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC : ACAAACAAATTGAAACGAAAG</gDNA_template>
            <first_frame> K  D  I  N  W  C  *  R  Y  C  C  G  A  M  A  R  R  L  T  C  N  R  R  D  G  E  *  H  G  *  R  *  E  F  *  V  Q  E  S  T  I  A  T  A  *  F  R  I  E  W  F  I  V  C  S  F  F  *  G  G  F  *  R  K  V  W  T  I  R  K  S  Q  V  S  W  W  K  D  Y  S  S  W  S  W  L  I  S  I  I  T  Y  F  L  S  Q  F  R  T  G  C  C  C  C  C  Q  V  F  S  G  S  *  Y  C  R  C  T  C  F  H  R  W  T  L  C  R  I  E  D  *  L  C  L  C  H  S  N  W :   S  C  A  R  V  I  *  R  *  *  V  *  V  R  V  E  E  I  N  F  G  I  F  G  Y  S  W  T  G  N  W  T  *  N  R  E  E  N  Q  V  C  R  T  C  M  C  R  C  Y  T  R  *  R  A  R  *  R  T  S  Q  Y  S  Y  A  C :   G  T  C  *  R  G  *  K  D  C  V  H  L  *  R  C  H  F  C  *  H  F  G  C  *  A  V  Q  R  I  E  N  G  S  L  L  S  C  C  C  S  S  Y  *  K  S  S  L  L  H  P  F  M  F  *  N  S  Y  *  G  T  Q  N  K  V  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  P  Q  G  R  S  W  F  E  D  *  A  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  S  S  W  *  N  *  A  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T :   Q  T  N  *  N  E   </first_frame>
            <second_frame>  K  I  S  I  G  A  K  D  T  A  V  V  Q  W  Q  G  D  L  L  A  I  G  A  T  E  N  D  M  A  R  D  E  N  S  K  F  K  N  P  L  L  Q  Q  L  D  S  E  L  N  G  L  L  S  A  A  S  S  E  E  D  F  S  G  K  S  G  Q  S  V  N  L  R  F  P  G  G  R  I  T  L  V  G  L  G  S  S  A  S  S  P  T  S  Y  H  S  L  G  Q  A  A  A  A  A  A  K  S  S  Q  A  R  N  I  A  V  A  L  A  S  T  D  G  L  S  A  E  S  K  I  N  S  A  S  A  I  A  T   : G  V  V  L  G  S  F  E  D  N  R  F  R  S  E  S  K  K  S  T  L  E  S  L  D  I  L  G  L  G  T  G  P  E  I  E  R  K  I  K  Y  A  E  H  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  I  V  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  I  S  V  N  I  L  D  A  E  Q  C  K  E  L  K  M  G  A  Y  L  A  V  A  A  A  A  T  E  N  P  P  Y  F  I  H  L  C  F  K  T  P  T  K  E  R  K  T  K  L  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  L  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  E  I  R  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L   : H  K  Q  I  E  T  K  </second_frame>
            <third_frame>   R  Y  Q  L  V  L  K  I  L  L  W  C  N  G  K  E  T  Y  L  Q  *  A  R  R  R  M  T  W  L  E  M  R  I  L  S  S  R  I  H  Y  C  N  S  L  I  P  N  *  M  V  Y  C  L  Q  L  L  L  R  R  I  L  A  E  S  L  D  N  P  *  I  S  G  F  L  V  E  G  L  L  *  L  V  L  A  H  Q  H  H  H  L  L  L  I  T  V  *  D  R  L  L  L  L  L  P  S  L  L  R  L  V  I  L  P  L  H  L  L  P  P  M  D  S  L  Q  N  R  R  L  T  L  P  L  P  *  Q  L  :  E  L  C  *  G  H  L  K  I  I  G  L  G  P  S  R  R  N  Q  L  W  N  L  W  I  F  L  D  W  E  L  D  L  K  *  R  G  K  S  S  M  Q  N  M  Y  V  Q  V  L  Y  S  V  E  S  S  L  T  H  Q  P  I  *  L  R  L  :  R  Y  L  L  K  R  L  K  R  L  R  P  L  I  A  M  S  F  L  L  T  F  W  M  L  S  S  A  K  N  *  K  W  E  P  T  *  L  L  L  Q  Q  L  L  K  I  L  L  T  S  S  I  Y  V  L  K  L  L  L  R  N  A  K  Q  S  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  L  L  V  K  L  G  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  :  T  N  K  L  K  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51322" stop="51730"/>
                    <exon start="51812" stop="52006"/>
                    <exon start="52089" stop="52317"/>
                    <exon start="52388" stop="52514"/>
                    <exon start="52605" stop="52778"/>
                    <exon start="52866" stop="52926"/>
                    <exon start="53018" stop="53205"/>
                    <exon start="53305" stop="53427"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPGGRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIATGVVLGSFEDNRFRSESKKSTLESLDILGLGTGPEIERKIKYAEHVCAGVILGRELVNAPANIVTPAVLAEEAKKIASTYSDVISVNILDAEQCKELKMGAYLAVAAAATENPPYFIHLCFKTPTKERKTKLALVGKGLTFDSGGYNLKVGAGSRIELMKNDMGGAAAVLGAAKALGEIRPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="52872" e_stop="53582"/>
            <exon e_start="54346" e_stop="54366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.967" e_score="0.980"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="52872" e_stop="53582" e_length="711"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="53583" i_stop="54345" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="0.619">
            <gDNA_exon_boundary e_start="54346" e_stop="54366" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52872" stop="53368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53190" stop="53582"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53252" stop="53582"/>
              <exon start="54346" stop="54366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAA : ACAAACAAATTGAAACGAAAG</gDNA_template>
            <first_frame> D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A  G  I  F  V  C  D  S  I  L  C  L  V  H  V  V  R  L  L  C  L  N  F  I  G  Y  L  V  Y  E  Y  R  C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T  S  T  H  P  I  I  T  L  R  L  T  F  W  Y  I  L  H  I  F  I  F  R  R  E  T  *  H  L  V  F  V  Y  A  V  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  :  T  N  K  L  K  R  K </first_frame>
            <second_frame>  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  V  Y  L  F  V  T  L  F  F  V  W  Y  T  L  Y  V  Y  S  A  *  T  S  L  D  I  S  Y  T  N  T  G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  V  L  I  P  S  S  L  Y  D  *  H  F  G  T  F  Y  I  S  L  F  S  D  E  K  H  D  I  W  S  L  F  M  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  K :   Q  T  N  *  N  E   </second_frame>
            <third_frame>   S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W  Y  I  C  L  *  L  Y  S  L  F  G  T  R  C  T  S  T  L  L  E  L  H  W  I  S  R  I  R  I  Q  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  K  Y  S  S  H  H  H  S  T  T  D  I  L  V  H  S  T  Y  L  Y  F  Q  T  R  N  M  T  F  G  L  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E   : N  K  Q  I  E  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52987" stop="53235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLDISYTNTGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQVLIPSSLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="52871" e_stop="53605"/>
            <exon e_start="54579" e_stop="54626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.038" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="52871" e_stop="53605" e_length="735"/>
          </exon>
          <intron i_serial="1" don_prob="0.038" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53606" i_stop="54578" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="54579" e_stop="54626" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52871" stop="53605"/>
              <exon start="54579" stop="54626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52872" stop="53368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53317" stop="53581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53345" stop="53573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGAGTGGCTGATATGATTAACACGGGGCCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTATTTTCAGACGAGAAACATGACATTTGGTCTTTGTTTATGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGATGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAACATATTAGGGACTAATGATGTTTGGAAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGTATAGGCTTTCTTGTTATCTTGATTAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTGAAATGAAATTTATTATTCCCGTCTTATTTAC : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W  Y  I  C  L  *  L  Y  S  L  F  G  T  R  C  T  S  T  L  L  E  L  H  W  I  S  R  I  R  I  Q  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  E  W  L  I  *  L  T  R  G  L  V  M  A  V  L  *  L  V  L  S  S  S  N  K  Y  S  S  H  H  H  S  T  T  D  I  L  V  H  S  T  Y  L  Y  F  Q  T  R  N  M  T  F  G  L  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  M  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  T  Y  *  G  L  M  M  F  G  K  I  N  A  S  S  C  M  N  K  G  N  S  I  G  F  L  V  I  L  I  N  K  M  P  K  *  N  C  H  F  T  F  *  N  E  I  Y  Y  S  R  L  I  Y  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </first_frame>
            <second_frame>  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A  G  I  F  V  C  D  S  I  L  C  L  V  H  V  V  R  L  L  C  L  N  F  I  G  Y  L  V  Y  E  Y  R  C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  S  G  *  Y  D  *  H  G  A  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T  S  T  H  P  I  I  T  L  R  L  T  F  W  Y  I  L  H  I  F  I  F  R  R  E  T  *  H  L  V  F  V  Y  A  V  C  *  R  E  G  S  V  V  A  S  R  C  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  *  *  C  L  E  K  *  M  H  Q  V  V  *  I  K  A  I  V  *  A  F  L  L  S  *  L  I  K  C  L  N  K  I  A  T  L  P  F  E  M  K  F  I  I  P  V  L  F  T :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  V  Y  L  F  V  T  L  F  F  V  W  Y  T  L  Y  V  Y  S  A  *  T  S  L  D  I  S  Y  T  N  T  G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  T  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  V  L  I  P  S  S  L  Y  D  *  H  F  G  T  F  Y  I  S  L  F  S  D  E  K  H  D  I  W  S  L  F  M  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  N  I  L  G  T  N  D  V  W  K  N  K  C  I  K  L  Y  E  *  R  Q  *  Y  R  L  S  C  Y  L  D  *  *  N  A  *  I  K  L  P  L  Y  L  L  K  *  N  L  L  F  P  S  Y  L   : L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52987" stop="53235"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLDISYTNTGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINTGPGNGGAITGALFLKQVLIPSSLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="55980" PGL_stop="66434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55980" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55980" e_stop="56165" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="59039" e_stop="59396" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55984" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55986" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55987" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55987" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55990" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55992" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55995" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
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              <exon start="56091" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56101" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56127" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58064" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58113" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58115" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58132" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58137" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58234" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58261" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58937" stop="58947"/>
              <exon start="59039" stop="59346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59039" stop="59371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="59385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATACTAGTAATTCTG</gDNA_template>
            <first_frame> I  P  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  *  Y  P  D  V  L  I  D  T  S  N  S  </first_frame>
            <second_frame>  S  P  G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  N  S  I  Q  M  C  *  L  I  L  V  I  L </second_frame>
            <third_frame>   P  L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *  I  V  S  R  C  V  D  *  Y  *  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55980" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPWFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55980" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59359"/>
            <exon e_start="64859" e_stop="64942"/>
            <exon e_start="66405" e_stop="66434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.387" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="0.555" e_score="0.536"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55980" e_stop="56165" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59039" e_stop="59359" e_length="321"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.387">
            <gDNA_intron_boundary i_start="59360" i_stop="64858" i_length="5499"/>
          </intron>
          <exon e_serial="6" e_score="0.536">
            <gDNA_exon_boundary e_start="64859" e_stop="64942" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.790" acc_prob="0.555">
            <gDNA_intron_boundary i_start="64943" i_stop="66404" i_length="1462"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="66405" e_stop="66434" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55984" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55986" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55990" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55992" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="56037" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56040" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56046" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56048" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56091" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56101" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56127" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59359"/>
              <exon start="64859" stop="64942"/>
              <exon start="66405" stop="66434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58113" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58937" stop="58947"/>
              <exon start="59039" stop="59346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAA : AAGCAACAAACAATCAAAATCCAAATATAGTAAATTTTGAAAAAAAGAACTACCAAGAACACACCTGTATTAGGTGTCACCCAG : AACTTCATTATTCTTTGAAGGAAACAAAAG</gDNA_template>
            <first_frame> I  P  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  :  K  Q  Q  T  I  K  I  Q  I  *  *  I  L  K  K  R  T  T  K  N  T  P  V  L  G  V  T  Q  :  N  F  I  I  L  *  R  K  Q  K </first_frame>
            <second_frame>  S  P  G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  K :   S  N  K  Q  S  K  S  K  Y  S  K  F  *  K  K  E  L  P  R  T  H  L  Y  *  V  S  P  R :   T  S  L  F  F  E  G  N  K   </second_frame>
            <third_frame>   P  L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *   : K  A  T  N  N  Q  N  P  N  I  V  N  F  E  K  K  N  Y  Q  E  H  T  C  I  R  C  H  P   : E  L  H  Y  S  L  K  E  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55980" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPWFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="55980" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59327"/>
            <exon e_start="60596" e_stop="60627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.695" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55980" e_stop="56165" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59039" e_stop="59327" e_length="289"/>
          </exon>
          <intron i_serial="5" don_prob="0.695" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59328" i_stop="60595" i_length="1268"/>
          </intron>
          <exon e_serial="6" e_score="0.625">
            <gDNA_exon_boundary e_start="60596" e_stop="60627" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55980" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55984" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55986" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55990" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55992" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295104" strand="+"/>
          </PGS_line>
          <PGS_line>
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            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59039" stop="59327"/>
              <exon start="60596" stop="60627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCCTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAA : CTAAGAGACAAAAAAATAATAATTAATACTAA</gDNA_template>
            <first_frame> I  P  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R   : T  K  R  Q  K  N  N  N  *  Y  * </first_frame>
            <second_frame>  S  P  G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  :  L  R  D  K  K  I  I  I  N  T   </second_frame>
            <third_frame>   P  L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  N :   *  E  T  K  K  *  *  L  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55980" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPWFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="55985" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59301"/>
            <exon e_start="59564" e_stop="59582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.939" e_score="1.000"/>
          <exon-only e_score="0.421"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55985" e_stop="56165" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59039" e_stop="59301" e_length="263"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.939">
            <gDNA_intron_boundary i_start="59302" i_stop="59563" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="0.421">
            <gDNA_exon_boundary e_start="59564" e_stop="59582" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55985" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55989" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55990" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55992" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55993" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55995" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55995" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55998" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281596" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281586" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56002" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56002" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56002" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56004" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56004" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56006" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56006" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56006" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56008" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56009" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56010" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56011" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59301"/>
              <exon start="59564" stop="59582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56013" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56013" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56013" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56019" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56021" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56023" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56026" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56031" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56032" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56036" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56046" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56048" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56091" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56101" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56127" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58113" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAG : TTCCATGGTAAGGGTAAGG</gDNA_template>
            <first_frame> L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  :  F  H  G  K  G  K  </first_frame>
            <second_frame>  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  S :   S  M  V  R  V  R </second_frame>
            <third_frame>   G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *   : V  P  W  *  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55986" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="55985" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59283"/>
            <exon e_start="60603" e_stop="60621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
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            <referenceDNA id="SGN-E337475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56032" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56046" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56048" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56091" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56101" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56127" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGTTCTCCACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA : ACAAAAAAATAATAATTAA</gDNA_template>
            <first_frame> L  V  L  H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  :  T  K  K  *  *  L  </first_frame>
            <second_frame>  W  F  S  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  * :   Q  K  N  N  N  * </second_frame>
            <third_frame>   G  S  P  Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N   : N  K  K  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55986" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFSTANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="58013" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="0.985"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="58013" e_stop="58143" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="59039" e_stop="59385" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58013" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58064" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58113" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58115" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58132" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58137" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58234" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58249" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58250" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58261" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58937" stop="58947"/>
              <exon start="59039" stop="59346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59039" stop="59371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="59385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAACAGGTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATAC</gDNA_template>
            <first_frame> L  N  R  L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  N  S  I  Q  M  C  *  L  I  </first_frame>
            <second_frame>  *  T  G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *  I  V  S  R  C  V  D  *  Y </second_frame>
            <third_frame>   E  Q  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  *  Y  P  D  V  L  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58015" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59039" stop="59143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="55994" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58284"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59022" e_stop="59385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55994" e_stop="56165" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58228" e_stop="58284" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58285" i_stop="58872" i_length="588"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58948" i_stop="59021" i_length="74"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="59022" e_stop="59385" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281596" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281586" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56000" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56004" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56006" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56019" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56031" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56070" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59022" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56070" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59022" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56070" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58284"/>
              <exon start="58873" stop="58947"/>
              <exon start="59022" stop="59327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59039" stop="59371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="59385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTT : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : CTCTCGACTATTTGTAGGTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATAC</gDNA_template>
            <first_frame> H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F   : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : A  L  D  Y  L  *  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  *  Y  P  D  V  L  I  D   </first_frame>
            <second_frame>  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  L  S  T  I  C  R  L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  N  S  I  Q  M  C  *  L  I  </second_frame>
            <third_frame>   Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  S :   S  R  L  F  V  G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *  I  V  S  R  C  V  D  *  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55995" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58284"/>
                    <exon start="58873" stop="58947"/>
                    <exon start="59022" stop="59084"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQLSTICRLKVDLRKERISFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="55994" e_stop="56165"/>
            <exon e_start="58021" e_stop="58143"/>
            <exon e_start="58228" e_stop="58584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55994" e_stop="56165" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56166" i_stop="58020" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58021" e_stop="58143" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58144" i_stop="58227" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="58228" e_stop="58584" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55994" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281596" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55999" stop="56165"/>
              <exon start="58021" stop="58126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281586" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56004" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56024" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56031" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56111" stop="56165"/>
              <exon start="58021" stop="58143"/>
              <exon start="58228" stop="58269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGCAAACACAGAGAAGTTCATAGCAGAAGAAGAGAGAGATTTAGCTATGTCTGATGAAGAACACCATTTTGAGTCCAAAGCTGATGCTGGTGCCTCAAAAACTTACCCTCAACAAGCTGGTACTATTCGCAAGAATGGTTATATAGTTATCAAAGGCAGACCTTGCAAG : GTTGTTGAGGTCTCCACTTCCAAAACTGGCAAGCATGGACATGCAAAATGTCACTTTGTGGCAATCGACATTTTCAATGCAAAAAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGAT : GTGCCACATGTCAATCGTACTGACTATCAGCTGATTGACATATCTGAAGATGGTTTTGTAAGTTTTCTTTTACCTAGTATATGAAGTGTATAAGTCATCCTCTTACTGGGGAAAAACTTATTGGATACAGTGCTACGTAGTTCTATTGATGACTTATTGCATCGTTTTGATGTCTCTAGTAGTTTCTTCATGAAATTGAGATTTGAATAATGATGAAGTTGTCTTACCTTTCTTTTGTGAGAGAATTCCTACGGGGATTCTTTTCTCAATGAGTCCTGTCGGCTCTTTCCCAAGGTTCCATTGAGGGTCAGTCCCCTCTGGGCTGGTCCTTTTGAAGTTCGATGATGCAACTGAACA</gDNA_template>
            <first_frame> H  S  K  H  R  E  V  H  S  R  R  R  E  R  F  S  Y  V  *  *  R  T  P  F  *  V  Q  S  *  C  W  C  L  K  N  L  P  S  T  S  W  Y  Y  S  Q  E  W  L  Y  S  Y  Q  R  Q  T  L  Q   : G  C  *  G  L  H  F  Q  N  W  Q  A  W  T  C  K  M  S  L  C  G  N  R  H  F  Q  C  K  K  A  *  R  Y  C  S  F  I  P  Q  L  *   : C  A  T  C  Q  S  Y  *  L  S  A  D  *  H  I  *  R  W  F  C  K  F  S  F  T  *  Y  M  K  C  I  S  H  P  L  T  G  E  K  L  I  G  Y  S  A  T  *  F  Y  *  *  L  I  A  S  F  *  C  L  *  *  F  L  H  E  I  E  I  *  I  M  M  K  L  S  Y  L  S  F  V  R  E  F  L  R  G  F  F  S  Q  *  V  L  S  A  L  S  Q  G  S  I  E  G  Q  S  P  L  G  W  S  F  *  S  S  M  M  Q  L  N  </first_frame>
            <second_frame>  T  A  N  T  E  K  F  I  A  E  E  E  R  D  L  A  M  S  D  E  E  H  H  F  E  S  K  A  D  A  G  A  S  K  T  Y  P  Q  Q  A  G  T  I  R  K  N  G  Y  I  V  I  K  G  R  P  C  K  :  V  V  E  V  S  T  S  K  T  G  K  H  G  H  A  K  C  H  F  V  A  I  D  I  F  N  A  K  K  L  E  D  I  V  P  S  S  H  N  C  D  :  V  P  H  V  N  R  T  D  Y  Q  L  I  D  I  S  E  D  G  F  V  S  F  L  L  P  S  I  *  S  V  *  V  I  L  L  L  G  K  N  L  L  D  T  V  L  R  S  S  I  D  D  L  L  H  R  F  D  V  S  S  S  F  F  M  K  L  R  F  E  *  *  *  S  C  L  T  F  L  L  *  E  N  S  Y  G  D  S  F  L  N  E  S  C  R  L  F  P  K  V  P  L  R  V  S  P  L  W  A  G  P  F  E  V  R  *  C  N  *  T </second_frame>
            <third_frame>   Q  Q  T  Q  R  S  S  *  Q  K  K  R  E  I  *  L  C  L  M  K  N  T  I  L  S  P  K  L  M  L  V  P  Q  K  L  T  L  N  K  L  V  L  F  A  R  M  V  I  *  L  S  K  A  D  L  A  R :   L  L  R  S  P  L  P  K  L  A  S  M  D  M  Q  N  V  T  L  W  Q  S  T  F  S  M  Q  K  S  L  K  I  L  F  L  H  P  T  I  V  M :   C  H  M  S  I  V  L  T  I  S  *  L  T  Y  L  K  M  V  L  *  V  F  F  Y  L  V  Y  E  V  Y  K  S  S  S  Y  W  G  K  T  Y  W  I  Q  C  Y  V  V  L  L  M  T  Y  C  I  V  L  M  S  L  V  V  S  S  *  N  *  D  L  N  N  D  E  V  V  L  P  F  F  C  E  R  I  P  T  G  I  L  F  S  M  S  P  V  G  S  F  P  R  F  H  *  G  S  V  P  S  G  L  V  L  L  K  F  D  D  A  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55995" stop="56165"/>
                    <exon start="58021" stop="58143"/>
                    <exon start="58228" stop="58311"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TANTEKFIAEEERDLAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSFLLPSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="58713" e_stop="58713"/>
            <exon e_start="58873" e_stop="58947"/>
            <exon e_start="59039" e_stop="59385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.582" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58713" e_stop="58713" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.582" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58714" i_stop="58872" i_length="159"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58873" e_stop="58947" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="59039" e_stop="59385" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58713" stop="58713"/>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58873" stop="58947"/>
              <exon start="59039" stop="59296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281386" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58937" stop="58947"/>
              <exon start="59039" stop="59346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59039" stop="59371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59072" stop="59385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="9" gDNA_strand="+"/>
          <translation>
            <gDNA_template>T : GTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATAGTTTCTGTTTGGCATAAGGCAATGAACTGGATTTGATAGCAGAAGTAATCTACATGTCACTTTTTTTTTACTTGAATAGTATCCAGATGTGTTGATTGATAC</gDNA_template>
            <first_frame>  : C  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  V  S  V  W  H  K  A  M  N  W  I  *  *  Q  K  *  S  T  C  H  F  F  F  T  *  I  V  S  R  C  V  D  *  Y </first_frame>
            <second_frame>  :  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  *  F  L  F  G  I  R  Q  *  T  G  F  D  S  R  S  N  L  H  V  T  F  F  L  L  E  *  Y  P  D  V  L  I  D   </second_frame>
            <third_frame>  :   C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N  S  F  C  L  A  *  G  N  E  L  D  L  I  A  E  V  I  Y  M  S  L  F  F  Y  L  N  S  I  Q  M  C  *  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="63309" e_stop="63528"/>
            <exon e_start="63596" e_stop="63952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="63309" e_stop="63528" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63529" i_stop="63595" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="63596" e_stop="63952" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63309" stop="63528"/>
              <exon start="63596" stop="63952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689646" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="10" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATTTCTGAAAGTTATGGTAGAGAGATGGCGAGGTAATGCAAGAAAGAACTCGGAAGACAAAACATAGCAGACCATCCTAGCCCAGGACAGGAGAACTAGAACTTGTTAATCCCTTTTATTGACAAGTAACATGAATAATTGGAAGCAGATCCTTAAAGGAAAAATATAGGCATAATTACATAAACACACACTCAAACTTGGCCTCAGTTTTGACGA : CTCCACCTTACAAAATGATTATCTAGACACCTTCAAATGTTATGTGTCACGTCTGCATCAAATGTCCACGAGACACGGTGAGGGTTGGAGTGTTTAGTTGTCAATTGAGACAAAGTTGAGGTGTCTCACTGTGCACTCTCAAAGTTTGAGTGCTTACTTGTGGATTGGGACCAAGTTTGAATGTGTATTATGTATTATGCCAAAAAATTAACTGTTTTCCTGGTGAAGAAGTAACACTTTCATCTATCAAATAAAAGAACTTATCCCAAACAGTACCTGAATATGTGCCTCTTGCAAAGAATGGAAGGCCAGGTGAGTTCAGCCAATGCCCCGCAAAGGACAAGGAGCTCGAATAGC</gDNA_template>
            <first_frame> *  N  F  *  K  L  W  *  R  D  G  E  V  M  Q  E  R  T  R  K  T  K  H  S  R  P  S  *  P  R  T  G  E  L  E  L  V  N  P  F  Y  *  Q  V  T  *  I  I  G  S  R  S  L  K  E  K  Y  R  H  N  Y  I  N  T  H  S  N  L  A  S  V  L  T   : T  P  P  Y  K  M  I  I  *  T  P  S  N  V  M  C  H  V  C  I  K  C  P  R  D  T  V  R  V  G  V  F  S  C  Q  L  R  Q  S  *  G  V  S  L  C  T  L  K  V  *  V  L  T  C  G  L  G  P  S  L  N  V  Y  Y  V  L  C  Q  K  I  N  C  F  P  G  E  E  V  T  L  S  S  I  K  *  K  N  L  S  Q  T  V  P  E  Y  V  P  L  A  K  N  G  R  P  G  E  F  S  Q  C  P  A  K  D  K  E  L  E  *  </first_frame>
            <second_frame>  K  I  S  E  S  Y  G  R  E  M  A  R  *  C  K  K  E  L  G  R  Q  N  I  A  D  H  P  S  P  G  Q  E  N  *  N  L  L  I  P  F  I  D  K  *  H  E  *  L  E  A  D  P  *  R  K  N  I  G  I  I  T  *  T  H  T  Q  T  W  P  Q  F  *  R  :  L  H  L  T  K  *  L  S  R  H  L  Q  M  L  C  V  T  S  A  S  N  V  H  E  T  R  *  G  L  E  C  L  V  V  N  *  D  K  V  E  V  S  H  C  A  L  S  K  F  E  C  L  L  V  D  W  D  Q  V  *  M  C  I  M  Y  Y  A  K  K  L  T  V  F  L  V  K  K  *  H  F  H  L  S  N  K  R  T  Y  P  K  Q  Y  L  N  M  C  L  L  Q  R  M  E  G  Q  V  S  S  A  N  A  P  Q  R  T  R  S  S  N  S </second_frame>
            <third_frame>   K  F  L  K  V  M  V  E  R  W  R  G  N  A  R  K  N  S  E  D  K  T  *  Q  T  I  L  A  Q  D  R  R  T  R  T  C  *  S  L  L  L  T  S  N  M  N  N  W  K  Q  I  L  K  G  K  I  *  A  *  L  H  K  H  T  L  K  L  G  L  S  F  D  D :   S  T  L  Q  N  D  Y  L  D  T  F  K  C  Y  V  S  R  L  H  Q  M  S  T  R  H  G  E  G  W  S  V  *  L  S  I  E  T  K  L  R  C  L  T  V  H  S  Q  S  L  S  A  Y  L  W  I  G  T  K  F  E  C  V  L  C  I  M  P  K  N  *  L  F  S  W  *  R  S  N  T  F  I  Y  Q  I  K  E  L  I  P  N  S  T  *  I  C  A  S  C  K  E  W  K  A  R  *  V  Q  P  M  P  R  K  G  Q  G  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="58776" e_stop="58947"/>
            <exon e_start="59039" e_stop="59283"/>
            <exon e_start="60603" e_stop="60617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58776" e_stop="58947" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58948" i_stop="59038" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="59039" e_stop="59283" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59284" i_stop="60602" i_length="1319"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="60603" e_stop="60617" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58776" stop="58947"/>
              <exon start="59039" stop="59283"/>
              <exon start="60603" stop="60617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281376" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="11" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTGTTCTAATTATAATCTTGAAGCTGGACTTGTTTTTGCTAATTCTTTTGTTATACCTGTTTTGAGTGTTGTCATCGGTTCATTCTTTTGGCTAGGTGTCTCTTCTTACTGAAAATGGAAACACCAAAGACGACCTCAGACTTCCCACCGATGACACCCTGTTGAACCAG : GTTAAAGGTGGATTTGAGGAAGGAAAGGATCTCGTTCTGTCTGTGATGTCTGCAATGGGTGAAGAGCAGATCTGTGCTGTGAAGGACATTGGTACCAAGACCTAGTTGTGTGCATTCTGCAGCATAAATAATTGCTTTTTAGCGAAGACGTTTTATATCTTGTTATCGTGGTACCTTTGCAATCTGTTTTATCGTGAAAACACCTTATATCTATTGGCATGGCTTGAATAGTTGAAACTCTAATA : ACAAAAAAATAATAA</gDNA_template>
            <first_frame> V  C  S  N  Y  N  L  E  A  G  L  V  F  A  N  S  F  V  I  P  V  L  S  V  V  I  G  S  F  F  W  L  G  V  S  S  Y  *  K  W  K  H  Q  R  R  P  Q  T  S  H  R  *  H  P  V  E  P   : G  *  R  W  I  *  G  R  K  G  S  R  S  V  C  D  V  C  N  G  *  R  A  D  L  C  C  E  G  H  W  Y  Q  D  L  V  V  C  I  L  Q  H  K  *  L  L  F  S  E  D  V  L  Y  L  V  I  V  V  P  L  Q  S  V  L  S  *  K  H  L  I  S  I  G  M  A  *  I  V  E  T  L  I  :  T  K  K  *  * </first_frame>
            <second_frame>  F  V  L  I  I  I  L  K  L  D  L  F  L  L  I  L  L  L  Y  L  F  *  V  L  S  S  V  H  S  F  G  *  V  S  L  L  T  E  N  G  N  T  K  D  D  L  R  L  P  T  D  D  T  L  L  N  Q  :  V  K  G  G  F  E  E  G  K  D  L  V  L  S  V  M  S  A  M  G  E  E  Q  I  C  A  V  K  D  I  G  T  K  T  *  L  C  A  F  C  S  I  N  N  C  F  L  A  K  T  F  Y  I  L  L  S  W  Y  L  C  N  L  F  Y  R  E  N  T  L  Y  L  L  A  W  L  E  *  L  K  L  *  * :   Q  K  N  N   </second_frame>
            <third_frame>   L  F  *  L  *  S  *  S  W  T  C  F  C  *  F  F  C  Y  T  C  F  E  C  C  H  R  F  I  L  L  A  R  C  L  F  L  L  K  M  E  T  P  K  T  T  S  D  F  P  P  M  T  P  C  *  T  R :   L  K  V  D  L  R  K  E  R  I  S  F  C  L  *  C  L  Q  W  V  K  S  R  S  V  L  *  R  T  L  V  P  R  P  S  C  V  H  S  A  A  *  I  I  A  F  *  R  R  R  F  I  S  C  Y  R  G  T  F  A  I  C  F  I  V  K  T  P  Y  I  Y  W  H  G  L  N  S  *  N  S  N   : N  K  K  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="56165" PGL_stop="55997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56165" e_stop="55997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="56165" e_stop="55997" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56165" stop="55997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281263" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCAAGGTCTGCCTTTGATAACTATATAACCATTCTTGCGAATAGTACCAGCTTGTTGAGGGTAAGTTTTTGAGGCACCAGCATCAGCTTTGGACTCAAAATGGTGTTCTTCATCAGACATAGCTAAATCTCTCTCTTCTTCTGCTATGAACTTCTCTGTGTTTGCT</gDNA_template>
            <first_frame> L  A  R  S  A  F  D  N  Y  I  T  I  L  A  N  S  T  S  L  L  R  V  S  F  *  G  T  S  I  S  F  G  L  K  M  V  F  F  I  R  H  S  *  I  S  L  F  F  C  Y  E  L  L  C  V  C  </first_frame>
            <second_frame>  L  Q  G  L  P  L  I  T  I  *  P  F  L  R  I  V  P  A  C  *  G  *  V  F  E  A  P  A  S  A  L  D  S  K  W  C  S  S  S  D  I  A  K  S  L  S  S  S  A  M  N  F  S  V  F  A </second_frame>
            <third_frame>   C  K  V  C  L  *  *  L  Y  N  H  S  C  E  *  Y  Q  L  V  E  G  K  F  L  R  H  Q  H  Q  L  W  T  Q  N  G  V  L  H  Q  T  *  L  N  L  S  L  L  L  L  *  T  S  L  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="65408" PGL_stop="62067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65254" e_stop="64923"/>
            <exon e_start="64085" e_stop="64028"/>
            <exon e_start="63955" e_stop="63872"/>
            <exon e_start="63291" e_stop="63150"/>
            <exon e_start="62329" e_stop="62067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65254" e_stop="64923" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64028" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63955" e_stop="63872" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="63871" i_stop="63292" i_length="580"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63291" e_stop="63150" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63149" i_stop="62330" i_length="820"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="62329" e_stop="62067" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65254" stop="64923"/>
              <exon start="64085" stop="64028"/>
              <exon start="63955" stop="63872"/>
              <exon start="63291" stop="63150"/>
              <exon start="62329" stop="62067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65253" stop="64923"/>
              <exon start="64085" stop="64028"/>
              <exon start="63955" stop="63872"/>
              <exon start="63291" stop="63150"/>
              <exon start="62329" stop="62071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG : ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA : GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAG : AGAAGTATTCGCAGATTTTGATCCCATAGTAGTGGCCAAGTTGAATGAAAAGAAGACTTTAGCTCCTGGAGGTACGGCATGCTCACTATTATCAGAACTTAAACTGCGTGGCATCATTGAAAATGCTCGTCAAATGTTGAAG : GTTATAGATGAATTTGGATCATTTGACAAGTATATCTGGAGCTTTGTGAACCACAAGCCTATAGTAAGTGGATTTAGATATCCTCGTCAAGTTCCGGTGAAGACAGCAAAAGCAGATCTGATTAGCAAAGACCTAATTAGGAGAGGTTTCCGGGGCGTGGGACCTACTGTGGTCTACTCTTTCATGCAGGTTGCTGGTATTACAAATGACCATCTTATTAGTTGCTTTAGATTTCCTGACTGTGTTGAATCTGCTGAAGGTAA</gDNA_template>
            <first_frame> S  E  V  K  R  G  A  *  D  G  *  *  K  W  S  P  A  I  P  F  I  A  S  F  *  C  S  F  D  T  *  A  T  R  V  I  V  F  Q  L  F  T  *  C  F  M  F  F  *  C  L  D  G  F  I  S  Q  Q  C  F  N  W  *  D  I  *  N  E  *  Y  L  K  Q  K  E  A  V  G  V  E  V  Q  K  D  S  F  R  *  Y  I  R  L  F  N  *  W  F  T  I  K  E  K  M  C  L  G  D  T  *  Y  R :   S  I  L  C  *  F  P  R  *  R  M  G  S  S  S  P  *  R  Q  :  E  A  I  R  A  P  C  P  L  R  G  I  G  *  T  H  L  A  F  H  S  L  Q  E  A  H  I  Q  :  R  S  I  R  R  F  *  S  H  S  S  G  Q  V  E  *  K  E  D  F  S  S  W  R  Y  G  M  L  T  I  I  R  T  *  T  A  W  H  H  *  K  C  S  S  N  V  E   : G  Y  R  *  I  W  I  I  *  Q  V  Y  L  E  L  C  E  P  Q  A  Y  S  K  W  I  *  I  S  S  S  S  S  G  E  D  S  K  S  R  S  D  *  Q  R  P  N  *  E  R  F  P  G  R  G  T  Y  C  G  L  L  F  H  A  G  C  W  Y  Y  K  *  P  S  Y  *  L  L  *  I  S  *  L  C  *  I  C  *  R  * </first_frame>
            <second_frame>  V  K  S  K  E  E  L  E  M  D  D  K  N  G  H  Q  P  S  P  S  L  L  P  F  D  V  P  S  I  L  R  R  Q  E  S  L  Y  S  N  F  S  L  S  A  S  C  S  S  D  A  S  T  D  S  Y  H  S  S  A  S  T  G  R  I  Y  R  M  N  S  T  S  S  R  R  K  Q  L  A  S  K  S  K  R  I  V  S  D  D  I  S  D  S  S  I  D  G  S  Q  S  K  K  R  C  A  W  V  T  P  N  T   : D  P  S  Y  A  N  F  H  D  E  E  W  G  V  P  V  H  D  D  K :   K  L  F  E  L  L  V  L  C  G  A  L  A  E  L  T  W  P  S  I  L  C  K  R  H  I  F  R :   E  V  F  A  D  F  D  P  I  V  V  A  K  L  N  E  K  K  T  L  A  P  G  G  T  A  C  S  L  L  S  E  L  K  L  R  G  I  I  E  N  A  R  Q  M  L  K  :  V  I  D  E  F  G  S  F  D  K  Y  I  W  S  F  V  N  H  K  P  I  V  S  G  F  R  Y  P  R  Q  V  P  V  K  T  A  K  A  D  L  I  S  K  D  L  I  R  R  G  F  R  G  V  G  P  T  V  V  Y  S  F  M  Q  V  A  G  I  T  N  D  H  L  I  S  C  F  R  F  P  D  C  V  E  S  A  E  G   </second_frame>
            <third_frame>   *  S  Q  K  R  S  L  R  W  M  I  K  M  V  T  S  H  P  L  H  C  F  L  L  M  F  L  R  Y  L  G  D  K  S  H  C  I  P  T  F  H  L  V  L  H  V  L  L  M  P  R  R  I  H  I  T  A  V  L  Q  L  V  G  Y  I  E  *  I  V  P  Q  A  E  G  S  S  W  R  R  S  P  K  G  *  F  Q  M  I  Y  Q  T  L  Q  L  M  V  H  N  Q  R  K  D  V  P  G  *  H  L  I  Q  :  I  H  L  M  L  I  S  T  M  K  N  G  E  F  Q  S  M  T  T   : R  S  Y  S  S  S  L  S  F  A  G  H  W  L  N  S  P  G  L  P  F  F  A  R  G  T  Y  S   : E  K  Y  S  Q  I  L  I  P  *  *  W  P  S  *  M  K  R  R  L  *  L  L  E  V  R  H  A  H  Y  Y  Q  N  L  N  C  V  A  S  L  K  M  L  V  K  C  *  R :   L  *  M  N  L  D  H  L  T  S  I  S  G  A  L  *  T  T  S  L  *  *  V  D  L  D  I  L  V  K  F  R  *  R  Q  Q  K  Q  I  *  L  A  K  T  *  L  G  E  V  S  G  A  W  D  L  L  W  S  T  L  S  C  R  L  L  V  L  Q  M  T  I  L  L  V  A  L  D  F  L  T  V  L  N  L  L  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65253" stop="64923"/>
                    <exon start="64085" stop="64028"/>
                    <exon start="63955" stop="63872"/>
                    <exon start="63291" stop="63150"/>
                    <exon start="62329" stop="62069"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKSKEELEMDDKNGHQPSPSLLPFDVPSILRRQESLYSNFSLSASCSSDASTDSYHSSASTGRIYRMNSTSSRRKQLASKSKRIVSDDISDSSIDGSQSKKRCAWVTPNTDPSYANFHDEEWGVPVHDDKKLFELLVLCGALAELTWPSILCKRHIFREVFADFDPIVVAKLNEKKTLAPGGTACSLLSELKLRGIIENARQMLKVIDEFGSFDKYIWSFVNHKPIVSGFRYPRQVPVKTAKADLISKDLIRRGFRGVGPTVVYSFMQVAGITNDHLISCFRFPDCVESAEG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65408" e_stop="64923"/>
            <exon e_start="64085" e_stop="64028"/>
            <exon e_start="63955" e_stop="63750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65408" e_stop="64923" e_length="486"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="64922" i_stop="64086" i_length="837"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64028" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64027" i_stop="63956" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63955" e_stop="63750" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65408" stop="64923"/>
              <exon start="64085" stop="64028"/>
              <exon start="63955" stop="63750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344047" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAGGGGAGTTTTGTTCAATGTCAGGAGCTTCAAGAGTAAGGTCAATGAATGTAGCTGATTCAGAAGCAAGGCCAGTTCTTGGACTAGCTGGGAATAAGGCACAGAGATCACCTGGTTCAAGAAAATCTATTTCGAAACCTACGAGAAAGATAGTGAAGTCAAAAGAGGAGCTTGAGATGGATGATAAAAATGGTCACCAGCCATCCCCTTCATTGCTTCCTTTTGATGTTCCTTCGATACTTAGGCGACAAGAGTCATTGTATTCCAACTTTTCACTTAGTGCTTCATGTTCTTCTGATGCCTCGACGGATTCATATCACAGCAGTGCTTCAACTGGTAGGATATATAGAATGAATAGTACCTCAAGCAGAAGGAAGCAGTTGGCGTCGAAGTCCAAAAGGATAGTTTCAGATGATATATCAGACTCTTCAATTGATGGTTCACAATCAAAGAAAAGATGTGCCTGGGTGACACCTAATACAG : ATCCATCTTATGCTAATTTCCACGATGAAGAATGGGGAGTTCCAGTCCATGACGACAA : GAAGCTATTCGAGCTCCTTGTCCTTTGCGGGGCATTGGCTGAACTCACCTGGCCTTCCATTCTTTGCAAGAGGCACATATTCAGGTACTGTTTGGGATAAGTTCTTTTATTTGATAGATGAAAGTGTTACTTCTTCACCAGGAAAACAGTTAATTTTTTGGCATAATACATAATACACATTCAAACTTGGTCCCAATCCACAAGTA</gDNA_template>
            <first_frame> A  E  G  S  F  V  Q  C  Q  E  L  Q  E  *  G  Q  *  M  *  L  I  Q  K  Q  G  Q  F  L  D  *  L  G  I  R  H  R  D  H  L  V  Q  E  N  L  F  R  N  L  R  E  R  *  *  S  Q  K  R  S  L  R  W  M  I  K  M  V  T  S  H  P  L  H  C  F  L  L  M  F  L  R  Y  L  G  D  K  S  H  C  I  P  T  F  H  L  V  L  H  V  L  L  M  P  R  R  I  H  I  T  A  V  L  Q  L  V  G  Y  I  E  *  I  V  P  Q  A  E  G  S  S  W  R  R  S  P  K  G  *  F  Q  M  I  Y  Q  T  L  Q  L  M  V  H  N  Q  R  K  D  V  P  G  *  H  L  I  Q  :  I  H  L  M  L  I  S  T  M  K  N  G  E  F  Q  S  M  T  T   : R  S  Y  S  S  S  L  S  F  A  G  H  W  L  N  S  P  G  L  P  F  F  A  R  G  T  Y  S  G  T  V  W  D  K  F  F  Y  L  I  D  E  S  V  T  S  S  P  G  K  Q  L  I  F  W  H  N  T  *  Y  T  F  K  L  G  P  N  P  Q  V </first_frame>
            <second_frame>  Q  R  G  V  L  F  N  V  R  S  F  K  S  K  V  N  E  C  S  *  F  R  S  K  A  S  S  W  T  S  W  E  *  G  T  E  I  T  W  F  K  K  I  Y  F  E  T  Y  E  K  D  S  E  V  K  R  G  A  *  D  G  *  *  K  W  S  P  A  I  P  F  I  A  S  F  *  C  S  F  D  T  *  A  T  R  V  I  V  F  Q  L  F  T  *  C  F  M  F  F  *  C  L  D  G  F  I  S  Q  Q  C  F  N  W  *  D  I  *  N  E  *  Y  L  K  Q  K  E  A  V  G  V  E  V  Q  K  D  S  F  R  *  Y  I  R  L  F  N  *  W  F  T  I  K  E  K  M  C  L  G  D  T  *  Y  R :   S  I  L  C  *  F  P  R  *  R  M  G  S  S  S  P  *  R  Q  :  E  A  I  R  A  P  C  P  L  R  G  I  G  *  T  H  L  A  F  H  S  L  Q  E  A  H  I  Q  V  L  F  G  I  S  S  F  I  *  *  M  K  V  L  L  L  H  Q  E  N  S  *  F  F  G  I  I  H  N  T  H  S  N  L  V  P  I  H  K   </second_frame>
            <third_frame>   R  G  E  F  C  S  M  S  G  A  S  R  V  R  S  M  N  V  A  D  S  E  A  R  P  V  L  G  L  A  G  N  K  A  Q  R  S  P  G  S  R  K  S  I  S  K  P  T  R  K  I  V  K  S  K  E  E  L  E  M  D  D  K  N  G  H  Q  P  S  P  S  L  L  P  F  D  V  P  S  I  L  R  R  Q  E  S  L  Y  S  N  F  S  L  S  A  S  C  S  S  D  A  S  T  D  S  Y  H  S  S  A  S  T  G  R  I  Y  R  M  N  S  T  S  S  R  R  K  Q  L  A  S  K  S  K  R  I  V  S  D  D  I  S  D  S  S  I  D  G  S  Q  S  K  K  R  C  A  W  V  T  P  N  T   : D  P  S  Y  A  N  F  H  D  E  E  W  G  V  P  V  H  D  D  K :   K  L  F  E  L  L  V  L  C  G  A  L  A  E  L  T  W  P  S  I  L  C  K  R  H  I  F  R  Y  C  L  G  *  V  L  L  F  D  R  *  K  C  Y  F  F  T  R  K  T  V  N  F  L  A  *  Y  I  I  H  I  Q  T  W  S  Q  S  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65406" stop="64923"/>
                    <exon start="64085" stop="64028"/>
                    <exon start="63955" stop="63856"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGEFCSMSGASRVRSMNVADSEARPVLGLAGNKAQRSPGSRKSISKPTRKIVKSKEELEMDDKNGHQPSPSLLPFDVPSILRRQESLYSNFSLSASCSSDASTDSYHSSASTGRIYRMNSTSSRRKQLASKSKRIVSDDISDSSIDGSQSKKRCAWVTPNTDPSYANFHDEEWGVPVHDDKKLFELLVLCGALAELTWPSILCKRHIFRYCLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="83452" PGL_stop="82668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83452" e_stop="83218"/>
            <exon e_start="82788" e_stop="82668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83452" e_stop="83218" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.932">
            <gDNA_intron_boundary i_start="83217" i_stop="82789" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82788" e_stop="82668" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83452" stop="83218"/>
              <exon start="82788" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCTAAGACATTTGTTCTTCTTTCTCTCTTATAGTATTTCACTTATACTCTTTTGGAGTGAAATAAATATTGGTTGTTTGTGTCCGAGGAGTAGGCAAAAGAAAACAAAAGTTTGCCGAACCTCATTAATTCCTGGTGTTCTTTCTCTTGTTGTCTCATTTACTATTTATTAGCTACCTTTAGATATAGTAGTTGTGATTCCATCACTCTCTATATATTCGACTTCCGCAACG : ACAGACAAAGCTTCAATGTTAGATGAGATCATCGATTATGTCAGGTTCCTCCAGCTCCAAGTCAAAGTACTCTCTCTCTCTTCACATTTATTGTTCTTTGGCTTAAAAATTGGAAACAGAT</gDNA_template>
            <first_frame> S  P  K  T  F  V  L  L  S  L  L  *  Y  F  T  Y  T  L  L  E  *  N  K  Y  W  L  F  V  S  E  E  *  A  K  E  N  K  S  L  P  N  L  I  N  S  W  C  S  F  S  C  C  L  I  Y  Y  L  L  A  T  F  R  Y  S  S  C  D  S  I  T  L  Y  I  F  D  F  R  N   : D  R  Q  S  F  N  V  R  *  D  H  R  L  C  Q  V  P  P  A  P  S  Q  S  T  L  S  L  F  T  F  I  V  L  W  L  K  N  W  K  Q   </first_frame>
            <second_frame>  L  L  R  H  L  F  F  F  L  S  Y  S  I  S  L  I  L  F  W  S  E  I  N  I  G  C  L  C  P  R  S  R  Q  K  K  T  K  V  C  R  T  S  L  I  P  G  V  L  S  L  V  V  S  F  T  I  Y  *  L  P  L  D  I  V  V  V  I  P  S  L  S  I  Y  S  T  S  A  T  :  T  D  K  A  S  M  L  D  E  I  I  D  Y  V  R  F  L  Q  L  Q  V  K  V  L  S  L  S  S  H  L  L  F  F  G  L  K  I  G  N  R  </second_frame>
            <third_frame>   S  *  D  I  C  S  S  F  S  L  I  V  F  H  L  Y  S  F  G  V  K  *  I  L  V  V  C  V  R  G  V  G  K  R  K  Q  K  F  A  E  P  H  *  F  L  V  F  F  L  L  L  S  H  L  L  F  I  S  Y  L  *  I  *  *  L  *  F  H  H  S  L  Y  I  R  L  P  Q  R :   Q  T  K  L  Q  C  *  M  R  S  S  I  M  S  G  S  S  S  S  K  S  K  Y  S  L  S  L  H  I  Y  C  S  L  A  *  K  L  E  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="89452" PGL_stop="91022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89452" e_stop="89556"/>
            <exon e_start="90315" e_stop="90573"/>
            <exon e_start="91003" e_stop="91022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.131" e_score="0.988"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="89452" e_stop="89556" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89557" i_stop="90314" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="90315" e_stop="90573" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.131">
            <gDNA_intron_boundary i_start="90574" i_stop="91002" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="0.700">
            <gDNA_exon_boundary e_start="91003" e_stop="91022" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89452" stop="89556"/>
              <exon start="90315" stop="90573"/>
              <exon start="91003" stop="91022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATAGACAAGGACACTTTCCCCAAAGACGCCCTAGAGATAACTGCATGGACAGAAGATGGTCTTGTAATGGCTGCTCGTCACAAAGTTTATAGACACATTCAG : GGGGTACAATTCCATCCGGAGAGCATCATCACAAGTGAAGGCAAGACAATAGTTTACAATTTTATCAAACTGATAGAGAGGAAGGAAGAAGCAGAATCTCAAAACTAGATAACTCTCTTTACTTGCTGTACAAATTTGTGGTTTCGCCTCGATAAACCGATGCAAAAATATGTTATCTGTCTTTGTTGTAACTTTGCTGAGTTAAGTTAGAAGTTGTCAATACTTGTCATGGATTTAATTTTGAAATTCTTTAGATAAC : AAAAATCAGAATAATAAAAT</gDNA_template>
            <first_frame> V  I  D  K  D  T  F  P  K  D  A  L  E  I  T  A  W  T  E  D  G  L  V  M  A  A  R  H  K  V  Y  R  H  I  Q  :  G  V  Q  F  H  P  E  S  I  I  T  S  E  G  K  T  I  V  Y  N  F  I  K  L  I  E  R  K  E  E  A  E  S  Q  N  *  I  T  L  F  T  C  C  T  N  L  W  F  R  L  D  K  P  M  Q  K  Y  V  I  C  L  C  C  N  F  A  E  L  S  *  K  L  S  I  L  V  M  D  L  I  L  K  F  F  R  *   : Q  K  S  E  *  *  N </first_frame>
            <second_frame>  *  *  T  R  T  L  S  P  K  T  P  *  R  *  L  H  G  Q  K  M  V  L  *  W  L  L  V  T  K  F  I  D  T  F  R :   G  Y  N  S  I  R  R  A  S  S  Q  V  K  A  R  Q  *  F  T  I  L  S  N  *  *  R  G  R  K  K  Q  N  L  K  T  R  *  L  S  L  L  A  V  Q  I  C  G  F  A  S  I  N  R  C  K  N  M  L  S  V  F  V  V  T  L  L  S  *  V  R  S  C  Q  Y  L  S  W  I  *  F  *  N  S  L  D  N  :  K  N  Q  N  N  K   </second_frame>
            <third_frame>   N  R  Q  G  H  F  P  Q  R  R  P  R  D  N  C  M  D  R  R  W  S  C  N  G  C  S  S  Q  S  L  *  T  H  S   : G  G  T  I  P  S  G  E  H  H  H  K  *  R  Q  D  N  S  L  Q  F  Y  Q  T  D  R  E  E  G  R  S  R  I  S  K  L  D  N  S  L  Y  L  L  Y  K  F  V  V  S  P  R  *  T  D  A  K  I  C  Y  L  S  L  L  *  L  C  *  V  K  L  E  V  V  N  T  C  H  G  F  N  F  E  I  L  *  I  T :   K  I  R  I  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89452" stop="89556"/>
                    <exon start="90315" stop="90422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIDKDTFPKDALEITAWTEDGLVMAARHKVYRHIQGVQFHPESIITSEGKTIVYNFIKLIERKEEAESQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="94153" PGL_stop="95276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94153" e_stop="94507"/>
            <exon e_start="94656" e_stop="94748"/>
            <exon e_start="95135" e_stop="95276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="0.966"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="94153" e_stop="94507" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="94508" i_stop="94655" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94656" e_stop="94748" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94749" i_stop="95134" i_length="386"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="95135" e_stop="95276" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94153" stop="94507"/>
              <exon start="94656" stop="94688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279228" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94264" stop="94507"/>
              <exon start="94656" stop="94748"/>
              <exon start="95135" stop="95276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTCATTTCAAAGCACCGGCGAAAATGGTGCTTCGTCCGGCGAACACATGAGTCATTCCCATTTCGATCCGTCGTCGTCTCACGACGACTTCCTCCAACAGATTCTCTCTTCCGTTCCTTCTTCTTCTCCCTGGCCAGAAATCTCCGGCGACGGTCACCCCTACAATTTCGACGACCATCAGTCAACTCTTCTGGCTTCCAAACTCCGGCAGCATCAGATCAACGGCGGTACCTCTGCTGCTGCAGCTGCTAAAGCGTTGATGCTTCAGCAGCAGCTTTTGCTTTCCAGAGGAATCGCTGGTAATGGCGGCTCTGGGATAAACGGCGATCAAAACGACGACGGTTTGAATTCG : GGGAATGATATTTCAGTTCAAGCTCTTTACAATGGATTCGCTGGATCTCTTGGTCAAACCTCTAATCAATCTCAGCATTTTCACCATTCTCAG : GCCCAGAGTTTCGGAGCTCCGGCGGCGTCGTTATCGATGAATCAAACGCCGGCGGCGAGTGGTTCAGCTGGTGGAGCGCAGCCAAAGCAACAGAAAGTTAGGGCTCGTAGAGGACAAGCAACTGATCCTCACAGCATTGCTG</gDNA_template>
            <first_frame> E  L  I  S  K  H  R  R  K  W  C  F  V  R  R  T  H  E  S  F  P  F  R  S  V  V  V  S  R  R  L  P  P  T  D  S  L  F  R  S  F  F  F  S  L  A  R  N  L  R  R  R  S  P  L  Q  F  R  R  P  S  V  N  S  S  G  F  Q  T  P  A  A  S  D  Q  R  R  Y  L  C  C  C  S  C  *  S  V  D  A  S  A  A  A  F  A  F  Q  R  N  R  W  *  W  R  L  W  D  K  R  R  S  K  R  R  R  F  E  F   : G  E  *  Y  F  S  S  S  S  L  Q  W  I  R  W  I  S  W  S  N  L  *  S  I  S  A  F  S  P  F  S   : G  P  E  F  R  S  S  G  G  V  V  I  D  E  S  N  A  G  G  E  W  F  S  W  W  S  A  A  K  A  T  E  S  *  G  S  *  R  T  S  N  *  S  S  Q  H  C   </first_frame>
            <second_frame>  N  S  F  Q  S  T  G  E  N  G  A  S  S  G  E  H  M  S  H  S  H  F  D  P  S  S  S  H  D  D  F  L  Q  Q  I  L  S  S  V  P  S  S  S  P  W  P  E  I  S  G  D  G  H  P  Y  N  F  D  D  H  Q  S  T  L  L  A  S  K  L  R  Q  H  Q  I  N  G  G  T  S  A  A  A  A  A  K  A  L  M  L  Q  Q  Q  L  L  L  S  R  G  I  A  G  N  G  G  S  G  I  N  G  D  Q  N  D  D  G  L  N  S  :  G  N  D  I  S  V  Q  A  L  Y  N  G  F  A  G  S  L  G  Q  T  S  N  Q  S  Q  H  F  H  H  S  Q  :  A  Q  S  F  G  A  P  A  A  S  L  S  M  N  Q  T  P  A  A  S  G  S  A  G  G  A  Q  P  K  Q  Q  K  V  R  A  R  R  G  Q  A  T  D  P  H  S  I  A  </second_frame>
            <third_frame>   T  H  F  K  A  P  A  K  M  V  L  R  P  A  N  T  *  V  I  P  I  S  I  R  R  R  L  T  T  T  S  S  N  R  F  S  L  P  F  L  L  L  L  P  G  Q  K  S  P  A  T  V  T  P  T  I  S  T  T  I  S  Q  L  F  W  L  P  N  S  G  S  I  R  S  T  A  V  P  L  L  L  Q  L  L  K  R  *  C  F  S  S  S  F  C  F  P  E  E  S  L  V  M  A  A  L  G  *  T  A  I  K  T  T  T  V  *  I  R :   G  M  I  F  Q  F  K  L  F  T  M  D  S  L  D  L  L  V  K  P  L  I  N  L  S  I  F  T  I  L  R :   P  R  V  S  E  L  R  R  R  R  Y  R  *  I  K  R  R  R  R  V  V  Q  L  V  E  R  S  Q  S  N  R  K  L  G  L  V  E  D  K  Q  L  I  L  T  A  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94154" stop="94507"/>
                    <exon start="94656" stop="94748"/>
                    <exon start="95135" stop="95275"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFQSTGENGASSGEHMSHSHFDPSSSHDDFLQQILSSVPSSSPWPEISGDGHPYNFDDHQSTLLASKLRQHQINGGTSAAAAAKALMLQQQLLLSRGIAGNGGSGINGDQNDDGLNSGNDISVQALYNGFAGSLGQTSNQSQHFHHSQAQSFGAPAASLSMNQTPAASGSAGGAQPKQQKVRARRGQATDPHSIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="96865" PGL_stop="108488"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98976" e_stop="99242"/>
            <exon e_start="101489" e_stop="101903"/>
            <exon e_start="101985" e_stop="102179"/>
            <exon e_start="102265" e_stop="102490"/>
            <exon e_start="102633" e_stop="102759"/>
            <exon e_start="102857" e_stop="102952"/>
            <exon e_start="103659" e_stop="103736"/>
            <exon e_start="104247" e_stop="104307"/>
            <exon e_start="104674" e_stop="104861"/>
            <exon e_start="105424" e_stop="105806"/>
            <exon e_start="108277" e_stop="108306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="0.996"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.767"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="98976" e_stop="99242" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101903" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101985" e_stop="102179" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102265" e_stop="102490" e_length="226"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102633" e_stop="102759" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102857" e_stop="102952" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103659" e_stop="103736" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104247" e_stop="104307" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="104674" e_stop="104861" e_length="188"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="105424" e_stop="105806" e_length="383"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105807" i_stop="108276" i_length="2470"/>
          </intron>
          <exon e_serial="11" e_score="0.767">
            <gDNA_exon_boundary e_start="108277" e_stop="108306" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98976" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98984" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99014" stop="99242"/>
              <exon start="101489" stop="101862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99032" stop="99242"/>
              <exon start="101489" stop="101849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99033" stop="99242"/>
              <exon start="101489" stop="101720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99037" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="101998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99040" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99042" stop="99242"/>
              <exon start="101489" stop="101864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99046" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99048" stop="99242"/>
              <exon start="101489" stop="101698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99053" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99062" stop="99242"/>
              <exon start="101489" stop="101544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99081" stop="99242"/>
              <exon start="101489" stop="101617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99120" stop="99242"/>
              <exon start="101489" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99176" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99181" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101903"/>
              <exon start="101985" stop="102175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101678" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101855" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102039" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102403" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102424" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102468" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102661" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102665" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103681" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103700" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103704" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103716" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104274" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104689" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104697" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104741" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104751" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104767" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104771" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104781" stop="104861"/>
              <exon start="105424" stop="105806"/>
              <exon start="108277" stop="108306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104803" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104803" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104822" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104846" stop="104861"/>
              <exon start="105424" stop="105735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG : ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG : GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG : CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG : GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG : GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG : ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG : GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG : TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCT : AAAAAAAAAACAAAAAAAAATTTAAAAATT</gDNA_template>
            <first_frame> P  F  R  S  L  Y  L  H  I  N  T  Q  K  I  P  L  S  M  A  A  L  R  V  S  S  A  L  A  C  S  S  S  S  S  F  H  S  Y  P  S  I  F  T  K  F  Q  S  S  P  I  W  S  F  S  I  S  V  T  P  L  C  S  R  R  A  K  R  M  A  H  S  I  A  R  D  T  L  G  L  T  H  T  N  Q  S  D  A  P  K  :  I  S  F  A  A  K  E  I  D  L  V  E  W  K  G  D  I  L  T  V  G  A  T  E  K  D  L  A  R  D  G  N  S  K  F  Q  N  P  L  L  Q  K  L  D  S  K  L  S  G  L  L  S  E  A  S  S  E  E  D  F  S  G  K  A  G  Q  S  T  I  L  R  L  P  G  L  G  S  K  R  I  A  L  V  G  L  G  S  P  T  S  S  T  A  A  Y  R  C  L  G  E  A  A  A  A  A  A  K  S  A  Q  A  S  N  I  A  I  A  L  A  S  T  D  G  L  S  A  E  L  K  L  S  S  A  S  A  I  T  T   : G  A  V  L  G  T  F  E  D  N  R  F  K  S  E  S  K  K  P  T  L  K  S  L  D  I  L  G  L  G  T  G  P  E  I  E  K  K  I  K  Y  A  A  D  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  V  L  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  F  S  A  N  I  L  D  V  E  Q  C  K  E  L  K  M  G  S  Y  L  A  V  A  A  A  S  A  N  P  A  H  F  I  H  L  C  Y  K  P  S  S  G  E  I  K  K  K  I  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  I  K  T  G  P  G  C  S  I  E  L  M  K  F  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  Q  I  K  P  A  G  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  G  T  G  M  R  P  G  D  I  I  T  A  S  N  G  K  T  I  E  :  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  V  Y  A  C  N  Q  G  V  E  K  :  I  V  D  L  A  T  L  T  G  A  C  V  V  A  L  G  P  S  I  A   : G  I  F  T  P  S  D  D  L  A  K  E  V  V  A  A  S  E  V  S  G  E  K  L  W  R  L  P  M  E  D  S  Y  W  D  S  M  K  S  G  V  A  D  M  V  N  T  G  G  R  P  G  G  A  I  T  A  A  L  F  L  K  Q  :  F  V  N  E  K  V  Q  W  M  H  I  D  L  A  G  P  V  W  S  D  K  K  K  N  A  T  G  F  G  V  S  T  L  V  E  W  V  L  K  N  S  T  N  *  N  Q  S  S  S  D  G  *  N  I  *  G  S  Y  V  L  P  F  Y  K  K  K  K  L  M  K  S  C  N  L  K  G  L  M  D  V  *  E  K  N  L  H  Q  V  F  M  N  K  F  G  V  K  M  V  E  K  K  R  H  *  *  T  *  I  L  I  Y  K  M  P  N  I  A  I  L  H  M  E  F  I  T  P  I  L :   K  K  K  Q  K  K  I  *  K   </first_frame>
            <second_frame>  P  L  G  L  S  I  Y  I  *  I  H  K  K  F  H  Y  Q  W  P  H  *  E  F  L  Q  H  W  L  V  H  L  L  H  L  F  T  H  T  L  Q  F  L  L  N  F  N  L  V  P  S  G  L  F  Q  F  Q  L  H  P  C  V  Q  E  E  L  K  E  W  L  I  L  L  L  V  I  L  L  V  L  L  I  L  I  K  V  M  L  L  R :   F  H  L  L  L  K  R  L  I  W  W  N  G  K  E  T  Y  L  Q  *  V  P  Q  R  R  T  W  L  E  T  G  I  L  S  S  R  I  H  Y  C  K  S  *  I  P  N  *  V  A  Y  C  L  K  L  H  L  R  R  I  L  V  E  R  L  D  N  P  Q  F  *  G  F  L  V  L  A  Q  K  G  L  L  *  L  G  L  A  H  Q  H  H  Q  L  L  L  I  A  V  *  G  R  L  L  L  Q  L  P  S  L  L  R  L  V  I  S  P  L  L  L  L  L  R  M  D  S  L  Q  S  *  S  L  A  L  P  L  P  *  Q  L  :  E  L  C  W  G  H  L  K  I  I  G  L  S  Q  S  Q  R  N  Q  H  *  N  L  W  I  F  L  D  W  V  L  D  L  R  *  R  R  K  S  S  M  Q  Q  M  S  V  Q  V  L  Y  S  E  E  S  L  S  M  H  P  P  M  F  L  R  L  :  R  Y  L  L  K  R  P  K  R  L  R  P  L  I  A  M  S  F  L  Q  T  S  W  M  L  S  S  A  K  N  *  K  W  D  P  I  *  L  S  L  Q  L  L  Q  I  L  L  I  S  S  I  C  V  I  S  L  V  V  E  K  *  K  R  R  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  L  D  L  V  V  L  L  S  *  *  S  L  T  W  E  G  L  Q  L  F  W  V  Q  Q  K  L  L  V  R  *  N  P  L  E  *  R :   C  I  S  L  L  Q  L  V  R  I  *  S  V  G  Q  A  *  G  L  E  T  L  S  L  L  Q  M  G  R  Q  L  R :   L  T  T  R  M  L  R  V  D  S  H  L  L  M  R  W  Y  M  P  V  T  K  V  *  K  R :   *  L  I  W  Q  H  *  L  V  L  V  W  L  L  L  G  L  Q  L  L  :  V  F  L  H  L  A  M  T  *  L  R  R  W  L  Q  L  L  R  *  A  V  K  N  Y  G  G  C  R  W  R  I  A  T  G  T  L  *  N  Q  E  W  L  I  W  *  T  R  E  V  V  Q  V  V  R  *  P  L  L  S  S  *  S  S :   L  L  T  R  R  S  N  G  C  I  S  T  *  L  V  L  S  G  V  I  K  R  K  T  P  R  V  L  V  F  Q  L  W  W  N  G  C  *  R  T  L  Q  I  R  T  S  H  H  L  M  A  K  T  Y  E  G  V  M  F  Y  H  F  I  R  K  K  N  L  *  K  V  V  I  S  R  D  L  W  M  F  E  K  R  I  C  I  K  F  L  *  I  N  L  G  *  K  W  W  K  R  K  G  T  S  R  L  R  Y  *  F  I  K  C  L  I  L  P  S  Y  I  W  N  L  L  P  L  S   : *  K  K  N  K  K  K  F  K  N  </second_frame>
            <third_frame>   L  *  V  S  L  S  T  Y  K  Y  T  K  N  S  I  I  N  G  R  I  E  S  F  F  S  I  G  L  F  I  F  F  I  F  S  L  I  P  F  N  F  Y  *  I  S  I  *  S  H  L  V  F  F  N  F  S  Y  T  L  V  F  K  K  S  *  K  N  G  S  F  Y  C  S  *  Y  S  W  S  Y  S  Y  *  S  K  *  C  S  *   : D  F  I  C  C  *  R  D  *  S  G  G  M  E  R  R  H  T  Y  S  R  C  H  R  E  G  L  G  *  R  R  E  F  *  V  P  E  S  T  I  A  K  A  R  F  Q  I  E  W  L  I  V  *  S  F  I  *  G  G  F  *  W  K  G  W  T  I  H  N  F  E  A  S  W  S  W  L  K  K  D  C  S  S  W  A  W  L  T  N  I  I  N  C  C  L  S  L  F  R  G  G  C  C  C  S  C  Q  V  C  S  G  *  *  Y  R  H  C  S  C  F  Y  G  W  T  L  C  R  V  E  A  *  L  C  L  C  H  N  N  W :   S  C  A  G  D  I  *  R  *  *  V  *  V  R  V  K  E  T  N  I  E  I  F  G  Y  S  W  T  G  Y  W  T  *  D  R  E  E  N  Q  V  C  S  R  C  L  C  R  C  Y  T  R  K  R  A  C  Q  C  T  R  Q  C  S  Y  A  C :   G  T  C  *  R  G  Q  K  D  C  V  H  L  *  R  C  L  F  C  K  H  L  G  C  *  A  V  Q  R  I  E  N  G  I  L  F  S  C  R  C  S  F  C  K  S  C  S  F  H  P  F  V  L  *  A  *  *  W  R  N  K  K  E  D  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  H  Q  D  W  T  W  L  F  Y  *  A  N  E  V  *  H  G  R  G  C  S  C  F  G  C  S  K  S  S  W  S  D  K  T  R  W  S  R   : G  A  F  H  C  C  S  L  *  E  Y  D  Q  W  D  R  H  E  A  W  R  H  Y  H  C  F  K  W  E  D  N  *   : G  *  Q  H  G  C  *  G  *  T  H  T  C  *  C  V  G  I  C  L  *  P  R  C  R  K   : D  S  *  F  G  N  I  N  W  C  L  C  G  C  S  W  A  F  N  C  W :   Y  F  Y  T  *  R  *  P  S  *  G  G  G  C  S  F  *  G  K  R  *  K  T  M  E  V  A  D  G  G  *  L  L  G  L  Y  E  I  R  S  G  *  Y  G  E  H  G  R  S  S  R  W  C  D  N  R  C  S  L  P  E  A   : V  C  *  R  E  G  P  M  D  A  Y  R  L  S  W  S  C  L  E  *  *  K  E  K  R  H  G  F  W  C  F  N  F  G  G  M  G  A  E  E  L  Y  K  L  E  P  V  I  I  *  W  L  K  H  M  R  E  L  C  F  T  I  L  *  E  K  K  T  Y  E  K  L  *  S  Q  G  T  Y  G  C  L  R  K  E  F  A  S  S  F  Y  E  *  I  W  G  E  N  G  G  K  E  K  A  L  V  D  L  D  I  D  L  *  N  A  *  Y  C  H  L  T  Y  G  I  Y  Y  P  Y  P  :  K  K  K  T  K  K  N  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98976" stop="99242"/>
                    <exon start="101489" stop="101903"/>
                    <exon start="101985" stop="102179"/>
                    <exon start="102265" stop="102490"/>
                    <exon start="102633" stop="102759"/>
                    <exon start="102857" stop="102952"/>
                    <exon start="103659" stop="103736"/>
                    <exon start="104247" stop="104307"/>
                    <exon start="104674" stop="104861"/>
                    <exon start="105424" stop="105555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFRSLYLHINTQKIPLSMAALRVSSALACSSSSSFHSYPSIFTKFQSSPIWSFSISVTPLCSRRAKRMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLGTFEDNRFKSESKKPTLKSLDILGLGTGPEIEKKIKYAADVCAGVILGRELVNAPANVLTPAVLAEEAKKIASTYSDVFSANILDVEQCKELKMGSYLAVAAASANPAHFIHLCYKPSSGEIKKKIALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGAAAVLGAAKALGQIKPAGVEVHFIVAACENMISGTGMRPGDIITASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIVDLATLTGACVVALGPSIAGIFTPSDDLAKEVVAASEVSGEKLWRLPMEDSYWDSMKSGVADMVNTGGRPGGAITAALFLKQFVNEKVQWMHIDLAGPVWSDKKKNATGFGVSTLVEWVLKNSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98976" e_stop="99242"/>
            <exon e_start="101489" e_stop="101903"/>
            <exon e_start="101985" e_stop="102179"/>
            <exon e_start="102265" e_stop="102490"/>
            <exon e_start="102633" e_stop="102759"/>
            <exon e_start="102857" e_stop="102952"/>
            <exon e_start="103659" e_stop="103736"/>
            <exon e_start="104247" e_stop="104307"/>
            <exon e_start="104674" e_stop="104861"/>
            <exon e_start="105424" e_stop="105761"/>
            <exon e_start="108461" e_stop="108488"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="0.996"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="98976" e_stop="99242" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101903" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101985" e_stop="102179" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102265" e_stop="102490" e_length="226"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102633" e_stop="102759" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102857" e_stop="102952" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103659" e_stop="103736" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104247" e_stop="104307" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="104674" e_stop="104861" e_length="188"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="105424" e_stop="105761" e_length="338"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105762" i_stop="108460" i_length="2699"/>
          </intron>
          <exon e_serial="11" e_score="0.929">
            <gDNA_exon_boundary e_start="108461" e_stop="108488" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98976" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98984" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99014" stop="99242"/>
              <exon start="101489" stop="101862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99032" stop="99242"/>
              <exon start="101489" stop="101849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99033" stop="99242"/>
              <exon start="101489" stop="101720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99037" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="101998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99040" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99042" stop="99242"/>
              <exon start="101489" stop="101864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99046" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99048" stop="99242"/>
              <exon start="101489" stop="101698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99053" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99062" stop="99242"/>
              <exon start="101489" stop="101544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99081" stop="99242"/>
              <exon start="101489" stop="101617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99120" stop="99242"/>
              <exon start="101489" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99176" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99181" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203862" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101903"/>
              <exon start="101985" stop="102175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316664" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101678" stop="101903"/>
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              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102932"/>
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            <referenceDNA id="SGN-E726679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="101903"/>
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              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
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              <exon start="102265" stop="102490"/>
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              <exon start="102857" stop="102913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
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              <exon start="102857" stop="102907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101855" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="102857" stop="102901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102403" stop="102490"/>
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              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102424" stop="102490"/>
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              <exon start="102857" stop="102952"/>
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              <exon start="104674" stop="104694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102468" stop="102490"/>
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              <exon start="104674" stop="104697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102661" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
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            <referenceDNA id="SGN-E725856" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102665" stop="102759"/>
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              <exon start="103659" stop="103736"/>
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              <exon start="105424" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102903" stop="102952"/>
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              <exon start="104247" stop="104307"/>
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              <exon start="105424" stop="105761"/>
              <exon start="108461" stop="108488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103681" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103700" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103704" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103716" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104274" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104689" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104697" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104741" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104767" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104771" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104803" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104846" stop="104861"/>
              <exon start="105424" stop="105735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG : ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG : GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG : CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG : GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG : GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG : ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG : GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG : TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAAT : AAAAAAAAAAAAAAAAAAAATAAATAAA</gDNA_template>
            <first_frame> P  F  R  S  L  Y  L  H  I  N  T  Q  K  I  P  L  S  M  A  A  L  R  V  S  S  A  L  A  C  S  S  S  S  S  F  H  S  Y  P  S  I  F  T  K  F  Q  S  S  P  I  W  S  F  S  I  S  V  T  P  L  C  S  R  R  A  K  R  M  A  H  S  I  A  R  D  T  L  G  L  T  H  T  N  Q  S  D  A  P  K  :  I  S  F  A  A  K  E  I  D  L  V  E  W  K  G  D  I  L  T  V  G  A  T  E  K  D  L  A  R  D  G  N  S  K  F  Q  N  P  L  L  Q  K  L  D  S  K  L  S  G  L  L  S  E  A  S  S  E  E  D  F  S  G  K  A  G  Q  S  T  I  L  R  L  P  G  L  G  S  K  R  I  A  L  V  G  L  G  S  P  T  S  S  T  A  A  Y  R  C  L  G  E  A  A  A  A  A  A  K  S  A  Q  A  S  N  I  A  I  A  L  A  S  T  D  G  L  S  A  E  L  K  L  S  S  A  S  A  I  T  T   : G  A  V  L  G  T  F  E  D  N  R  F  K  S  E  S  K  K  P  T  L  K  S  L  D  I  L  G  L  G  T  G  P  E  I  E  K  K  I  K  Y  A  A  D  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  V  L  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  F  S  A  N  I  L  D  V  E  Q  C  K  E  L  K  M  G  S  Y  L  A  V  A  A  A  S  A  N  P  A  H  F  I  H  L  C  Y  K  P  S  S  G  E  I  K  K  K  I  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  I  K  T  G  P  G  C  S  I  E  L  M  K  F  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  Q  I  K  P  A  G  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  G  T  G  M  R  P  G  D  I  I  T  A  S  N  G  K  T  I  E  :  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  V  Y  A  C  N  Q  G  V  E  K  :  I  V  D  L  A  T  L  T  G  A  C  V  V  A  L  G  P  S  I  A   : G  I  F  T  P  S  D  D  L  A  K  E  V  V  A  A  S  E  V  S  G  E  K  L  W  R  L  P  M  E  D  S  Y  W  D  S  M  K  S  G  V  A  D  M  V  N  T  G  G  R  P  G  G  A  I  T  A  A  L  F  L  K  Q  :  F  V  N  E  K  V  Q  W  M  H  I  D  L  A  G  P  V  W  S  D  K  K  K  N  A  T  G  F  G  V  S  T  L  V  E  W  V  L  K  N  S  T  N  *  N  Q  S  S  S  D  G  *  N  I  *  G  S  Y  V  L  P  F  Y  K  K  K  K  L  M  K  S  C  N  L  K  G  L  M  D  V  *  E  K  N  L  H  Q  V  F  M  N  K  F  G  V  K  M  V  E  K  K  R  H  *  *  T  *  I  L  I  Y  K  I :   K  K  K  K  K  K  I  N  K </first_frame>
            <second_frame>  P  L  G  L  S  I  Y  I  *  I  H  K  K  F  H  Y  Q  W  P  H  *  E  F  L  Q  H  W  L  V  H  L  L  H  L  F  T  H  T  L  Q  F  L  L  N  F  N  L  V  P  S  G  L  F  Q  F  Q  L  H  P  C  V  Q  E  E  L  K  E  W  L  I  L  L  L  V  I  L  L  V  L  L  I  L  I  K  V  M  L  L  R :   F  H  L  L  L  K  R  L  I  W  W  N  G  K  E  T  Y  L  Q  *  V  P  Q  R  R  T  W  L  E  T  G  I  L  S  S  R  I  H  Y  C  K  S  *  I  P  N  *  V  A  Y  C  L  K  L  H  L  R  R  I  L  V  E  R  L  D  N  P  Q  F  *  G  F  L  V  L  A  Q  K  G  L  L  *  L  G  L  A  H  Q  H  H  Q  L  L  L  I  A  V  *  G  R  L  L  L  Q  L  P  S  L  L  R  L  V  I  S  P  L  L  L  L  L  R  M  D  S  L  Q  S  *  S  L  A  L  P  L  P  *  Q  L  :  E  L  C  W  G  H  L  K  I  I  G  L  S  Q  S  Q  R  N  Q  H  *  N  L  W  I  F  L  D  W  V  L  D  L  R  *  R  R  K  S  S  M  Q  Q  M  S  V  Q  V  L  Y  S  E  E  S  L  S  M  H  P  P  M  F  L  R  L  :  R  Y  L  L  K  R  P  K  R  L  R  P  L  I  A  M  S  F  L  Q  T  S  W  M  L  S  S  A  K  N  *  K  W  D  P  I  *  L  S  L  Q  L  L  Q  I  L  L  I  S  S  I  C  V  I  S  L  V  V  E  K  *  K  R  R  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  L  D  L  V  V  L  L  S  *  *  S  L  T  W  E  G  L  Q  L  F  W  V  Q  Q  K  L  L  V  R  *  N  P  L  E  *  R :   C  I  S  L  L  Q  L  V  R  I  *  S  V  G  Q  A  *  G  L  E  T  L  S  L  L  Q  M  G  R  Q  L  R :   L  T  T  R  M  L  R  V  D  S  H  L  L  M  R  W  Y  M  P  V  T  K  V  *  K  R :   *  L  I  W  Q  H  *  L  V  L  V  W  L  L  L  G  L  Q  L  L  :  V  F  L  H  L  A  M  T  *  L  R  R  W  L  Q  L  L  R  *  A  V  K  N  Y  G  G  C  R  W  R  I  A  T  G  T  L  *  N  Q  E  W  L  I  W  *  T  R  E  V  V  Q  V  V  R  *  P  L  L  S  S  *  S  S :   L  L  T  R  R  S  N  G  C  I  S  T  *  L  V  L  S  G  V  I  K  R  K  T  P  R  V  L  V  F  Q  L  W  W  N  G  C  *  R  T  L  Q  I  R  T  S  H  H  L  M  A  K  T  Y  E  G  V  M  F  Y  H  F  I  R  K  K  N  L  *  K  V  V  I  S  R  D  L  W  M  F  E  K  R  I  C  I  K  F  L  *  I  N  L  G  *  K  W  W  K  R  K  G  T  S  R  L  R  Y  *  F  I  K   : *  K  K  K  K  K  K  *  I   </second_frame>
            <third_frame>   L  *  V  S  L  S  T  Y  K  Y  T  K  N  S  I  I  N  G  R  I  E  S  F  F  S  I  G  L  F  I  F  F  I  F  S  L  I  P  F  N  F  Y  *  I  S  I  *  S  H  L  V  F  F  N  F  S  Y  T  L  V  F  K  K  S  *  K  N  G  S  F  Y  C  S  *  Y  S  W  S  Y  S  Y  *  S  K  *  C  S  *   : D  F  I  C  C  *  R  D  *  S  G  G  M  E  R  R  H  T  Y  S  R  C  H  R  E  G  L  G  *  R  R  E  F  *  V  P  E  S  T  I  A  K  A  R  F  Q  I  E  W  L  I  V  *  S  F  I  *  G  G  F  *  W  K  G  W  T  I  H  N  F  E  A  S  W  S  W  L  K  K  D  C  S  S  W  A  W  L  T  N  I  I  N  C  C  L  S  L  F  R  G  G  C  C  C  S  C  Q  V  C  S  G  *  *  Y  R  H  C  S  C  F  Y  G  W  T  L  C  R  V  E  A  *  L  C  L  C  H  N  N  W :   S  C  A  G  D  I  *  R  *  *  V  *  V  R  V  K  E  T  N  I  E  I  F  G  Y  S  W  T  G  Y  W  T  *  D  R  E  E  N  Q  V  C  S  R  C  L  C  R  C  Y  T  R  K  R  A  C  Q  C  T  R  Q  C  S  Y  A  C :   G  T  C  *  R  G  Q  K  D  C  V  H  L  *  R  C  L  F  C  K  H  L  G  C  *  A  V  Q  R  I  E  N  G  I  L  F  S  C  R  C  S  F  C  K  S  C  S  F  H  P  F  V  L  *  A  *  *  W  R  N  K  K  E  D  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  H  Q  D  W  T  W  L  F  Y  *  A  N  E  V  *  H  G  R  G  C  S  C  F  G  C  S  K  S  S  W  S  D  K  T  R  W  S  R   : G  A  F  H  C  C  S  L  *  E  Y  D  Q  W  D  R  H  E  A  W  R  H  Y  H  C  F  K  W  E  D  N  *   : G  *  Q  H  G  C  *  G  *  T  H  T  C  *  C  V  G  I  C  L  *  P  R  C  R  K   : D  S  *  F  G  N  I  N  W  C  L  C  G  C  S  W  A  F  N  C  W :   Y  F  Y  T  *  R  *  P  S  *  G  G  G  C  S  F  *  G  K  R  *  K  T  M  E  V  A  D  G  G  *  L  L  G  L  Y  E  I  R  S  G  *  Y  G  E  H  G  R  S  S  R  W  C  D  N  R  C  S  L  P  E  A   : V  C  *  R  E  G  P  M  D  A  Y  R  L  S  W  S  C  L  E  *  *  K  E  K  R  H  G  F  W  C  F  N  F  G  G  M  G  A  E  E  L  Y  K  L  E  P  V  I  I  *  W  L  K  H  M  R  E  L  C  F  T  I  L  *  E  K  K  T  Y  E  K  L  *  S  Q  G  T  Y  G  C  L  R  K  E  F  A  S  S  F  Y  E  *  I  W  G  E  N  G  G  K  E  K  A  L  V  D  L  D  I  D  L  *  N  :  K  K  K  K  K  K  N  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98976" stop="99242"/>
                    <exon start="101489" stop="101903"/>
                    <exon start="101985" stop="102179"/>
                    <exon start="102265" stop="102490"/>
                    <exon start="102633" stop="102759"/>
                    <exon start="102857" stop="102952"/>
                    <exon start="103659" stop="103736"/>
                    <exon start="104247" stop="104307"/>
                    <exon start="104674" stop="104861"/>
                    <exon start="105424" stop="105555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFRSLYLHINTQKIPLSMAALRVSSALACSSSSSFHSYPSIFTKFQSSPIWSFSISVTPLCSRRAKRMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLGTFEDNRFKSESKKPTLKSLDILGLGTGPEIEKKIKYAADVCAGVILGRELVNAPANVLTPAVLAEEAKKIASTYSDVFSANILDVEQCKELKMGSYLAVAAASANPAHFIHLCYKPSSGEIKKKIALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGAAAVLGAAKALGQIKPAGVEVHFIVAACENMISGTGMRPGDIITASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIVDLATLTGACVVALGPSIAGIFTPSDDLAKEVVAASEVSGEKLWRLPMEDSYWDSMKSGVADMVNTGGRPGGAITAALFLKQFVNEKVQWMHIDLAGPVWSDKKKNATGFGVSTLVEWVLKNSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98976" e_stop="99242"/>
            <exon e_start="101489" e_stop="101903"/>
            <exon e_start="101985" e_stop="102179"/>
            <exon e_start="102265" e_stop="102490"/>
            <exon e_start="102633" e_stop="102759"/>
            <exon e_start="102857" e_stop="102952"/>
            <exon e_start="103659" e_stop="103736"/>
            <exon e_start="104247" e_stop="104307"/>
            <exon e_start="104674" e_stop="104861"/>
            <exon e_start="105424" e_stop="105727"/>
            <exon e_start="108264" e_stop="108296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="0.996"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.848"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="98976" e_stop="99242" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101903" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101985" e_stop="102179" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102265" e_stop="102490" e_length="226"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102633" e_stop="102759" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="102857" e_stop="102952" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="103659" e_stop="103736" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="104247" e_stop="104307" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="104674" e_stop="104861" e_length="188"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="105424" e_stop="105727" e_length="304"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105728" i_stop="108263" i_length="2536"/>
          </intron>
          <exon e_serial="11" e_score="0.848">
            <gDNA_exon_boundary e_start="108264" e_stop="108296" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98976" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98984" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99010" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99014" stop="99242"/>
              <exon start="101489" stop="101862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99032" stop="99242"/>
              <exon start="101489" stop="101849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99033" stop="99242"/>
              <exon start="101489" stop="101720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279131" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99036" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99037" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99039" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="101998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99040" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99041" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99042" stop="99242"/>
              <exon start="101489" stop="101864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99046" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99047" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99048" stop="99242"/>
              <exon start="101489" stop="101698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99051" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99053" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99054" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99055" stop="99242"/>
              <exon start="101489" stop="101814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99061" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99062" stop="99242"/>
              <exon start="101489" stop="101544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99063" stop="99242"/>
              <exon start="101489" stop="101777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99081" stop="99242"/>
              <exon start="101489" stop="101617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99120" stop="99242"/>
              <exon start="101489" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99176" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302495" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99181" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701685" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101903"/>
              <exon start="101985" stop="102175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101678" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735584" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="102857" stop="102907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101855" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102039" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102901"/>
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            <referenceDNA id="SGN-E274603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102403" stop="102490"/>
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              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102424" stop="102490"/>
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              <exon start="102857" stop="102952"/>
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              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102468" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
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              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286643" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102661" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
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              <exon start="104674" stop="104811"/>
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            <referenceDNA id="SGN-E725856" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102665" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
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              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102702" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105727"/>
              <exon start="108264" stop="108296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103700" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103704" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257965" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104697" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104741" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104767" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104771" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTTAGGTCTCTCTATCTACATATAAATACACAAAAAATTCCATTATCAATGGCCGCATTGAGAGTTTCTTCAGCATTGGCTTGTTCATCTTCTTCATCTTTTCACTCATACCCTTCAATTTTTACTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG : ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG : GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG : CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG : GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG : GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG : ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG : GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG : TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAA : AAAAAAAACCAAGAAAAAAAAAACAAAAAAAAA</gDNA_template>
            <first_frame> P  F  R  S  L  Y  L  H  I  N  T  Q  K  I  P  L  S  M  A  A  L  R  V  S  S  A  L  A  C  S  S  S  S  S  F  H  S  Y  P  S  I  F  T  K  F  Q  S  S  P  I  W  S  F  S  I  S  V  T  P  L  C  S  R  R  A  K  R  M  A  H  S  I  A  R  D  T  L  G  L  T  H  T  N  Q  S  D  A  P  K  :  I  S  F  A  A  K  E  I  D  L  V  E  W  K  G  D  I  L  T  V  G  A  T  E  K  D  L  A  R  D  G  N  S  K  F  Q  N  P  L  L  Q  K  L  D  S  K  L  S  G  L  L  S  E  A  S  S  E  E  D  F  S  G  K  A  G  Q  S  T  I  L  R  L  P  G  L  G  S  K  R  I  A  L  V  G  L  G  S  P  T  S  S  T  A  A  Y  R  C  L  G  E  A  A  A  A  A  A  K  S  A  Q  A  S  N  I  A  I  A  L  A  S  T  D  G  L  S  A  E  L  K  L  S  S  A  S  A  I  T  T   : G  A  V  L  G  T  F  E  D  N  R  F  K  S  E  S  K  K  P  T  L  K  S  L  D  I  L  G  L  G  T  G  P  E  I  E  K  K  I  K  Y  A  A  D  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  V  L  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  F  S  A  N  I  L  D  V  E  Q  C  K  E  L  K  M  G  S  Y  L  A  V  A  A  A  S  A  N  P  A  H  F  I  H  L  C  Y  K  P  S  S  G  E  I  K  K  K  I  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  I  K  T  G  P  G  C  S  I  E  L  M  K  F  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  Q  I  K  P  A  G  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  G  T  G  M  R  P  G  D  I  I  T  A  S  N  G  K  T  I  E  :  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  V  Y  A  C  N  Q  G  V  E  K  :  I  V  D  L  A  T  L  T  G  A  C  V  V  A  L  G  P  S  I  A   : G  I  F  T  P  S  D  D  L  A  K  E  V  V  A  A  S  E  V  S  G  E  K  L  W  R  L  P  M  E  D  S  Y  W  D  S  M  K  S  G  V  A  D  M  V  N  T  G  G  R  P  G  G  A  I  T  A  A  L  F  L  K  Q  :  F  V  N  E  K  V  Q  W  M  H  I  D  L  A  G  P  V  W  S  D  K  K  K  N  A  T  G  F  G  V  S  T  L  V  E  W  V  L  K  N  S  T  N  *  N  Q  S  S  S  D  G  *  N  I  *  G  S  Y  V  L  P  F  Y  K  K  K  K  L  M  K  S  C  N  L  K  G  L  M  D  V  *  E  K  N  L  H  Q  V  F  M  N  K  F  G  V  K  M  V  E  K  K   : K  K  K  P  R  K  K  K  Q  K  K  </first_frame>
            <second_frame>  P  L  G  L  S  I  Y  I  *  I  H  K  K  F  H  Y  Q  W  P  H  *  E  F  L  Q  H  W  L  V  H  L  L  H  L  F  T  H  T  L  Q  F  L  L  N  F  N  L  V  P  S  G  L  F  Q  F  Q  L  H  P  C  V  Q  E  E  L  K  E  W  L  I  L  L  L  V  I  L  L  V  L  L  I  L  I  K  V  M  L  L  R :   F  H  L  L  L  K  R  L  I  W  W  N  G  K  E  T  Y  L  Q  *  V  P  Q  R  R  T  W  L  E  T  G  I  L  S  S  R  I  H  Y  C  K  S  *  I  P  N  *  V  A  Y  C  L  K  L  H  L  R  R  I  L  V  E  R  L  D  N  P  Q  F  *  G  F  L  V  L  A  Q  K  G  L  L  *  L  G  L  A  H  Q  H  H  Q  L  L  L  I  A  V  *  G  R  L  L  L  Q  L  P  S  L  L  R  L  V  I  S  P  L  L  L  L  L  R  M  D  S  L  Q  S  *  S  L  A  L  P  L  P  *  Q  L  :  E  L  C  W  G  H  L  K  I  I  G  L  S  Q  S  Q  R  N  Q  H  *  N  L  W  I  F  L  D  W  V  L  D  L  R  *  R  R  K  S  S  M  Q  Q  M  S  V  Q  V  L  Y  S  E  E  S  L  S  M  H  P  P  M  F  L  R  L  :  R  Y  L  L  K  R  P  K  R  L  R  P  L  I  A  M  S  F  L  Q  T  S  W  M  L  S  S  A  K  N  *  K  W  D  P  I  *  L  S  L  Q  L  L  Q  I  L  L  I  S  S  I  C  V  I  S  L  V  V  E  K  *  K  R  R  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  L  D  L  V  V  L  L  S  *  *  S  L  T  W  E  G  L  Q  L  F  W  V  Q  Q  K  L  L  V  R  *  N  P  L  E  *  R :   C  I  S  L  L  Q  L  V  R  I  *  S  V  G  Q  A  *  G  L  E  T  L  S  L  L  Q  M  G  R  Q  L  R :   L  T  T  R  M  L  R  V  D  S  H  L  L  M  R  W  Y  M  P  V  T  K  V  *  K  R :   *  L  I  W  Q  H  *  L  V  L  V  W  L  L  L  G  L  Q  L  L  :  V  F  L  H  L  A  M  T  *  L  R  R  W  L  Q  L  L  R  *  A  V  K  N  Y  G  G  C  R  W  R  I  A  T  G  T  L  *  N  Q  E  W  L  I  W  *  T  R  E  V  V  Q  V  V  R  *  P  L  L  S  S  *  S  S :   L  L  T  R  R  S  N  G  C  I  S  T  *  L  V  L  S  G  V  I  K  R  K  T  P  R  V  L  V  F  Q  L  W  W  N  G  C  *  R  T  L  Q  I  R  T  S  H  H  L  M  A  K  T  Y  E  G  V  M  F  Y  H  F  I  R  K  K  N  L  *  K  V  V  I  S  R  D  L  W  M  F  E  K  R  I  C  I  K  F  L  *  I  N  L  G  *  K  W  W  K  R  K  :  K  K  N  Q  E  K  K  N  K  K  K </second_frame>
            <third_frame>   L  *  V  S  L  S  T  Y  K  Y  T  K  N  S  I  I  N  G  R  I  E  S  F  F  S  I  G  L  F  I  F  F  I  F  S  L  I  P  F  N  F  Y  *  I  S  I  *  S  H  L  V  F  F  N  F  S  Y  T  L  V  F  K  K  S  *  K  N  G  S  F  Y  C  S  *  Y  S  W  S  Y  S  Y  *  S  K  *  C  S  *   : D  F  I  C  C  *  R  D  *  S  G  G  M  E  R  R  H  T  Y  S  R  C  H  R  E  G  L  G  *  R  R  E  F  *  V  P  E  S  T  I  A  K  A  R  F  Q  I  E  W  L  I  V  *  S  F  I  *  G  G  F  *  W  K  G  W  T  I  H  N  F  E  A  S  W  S  W  L  K  K  D  C  S  S  W  A  W  L  T  N  I  I  N  C  C  L  S  L  F  R  G  G  C  C  C  S  C  Q  V  C  S  G  *  *  Y  R  H  C  S  C  F  Y  G  W  T  L  C  R  V  E  A  *  L  C  L  C  H  N  N  W :   S  C  A  G  D  I  *  R  *  *  V  *  V  R  V  K  E  T  N  I  E  I  F  G  Y  S  W  T  G  Y  W  T  *  D  R  E  E  N  Q  V  C  S  R  C  L  C  R  C  Y  T  R  K  R  A  C  Q  C  T  R  Q  C  S  Y  A  C :   G  T  C  *  R  G  Q  K  D  C  V  H  L  *  R  C  L  F  C  K  H  L  G  C  *  A  V  Q  R  I  E  N  G  I  L  F  S  C  R  C  S  F  C  K  S  C  S  F  H  P  F  V  L  *  A  *  *  W  R  N  K  K  E  D  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  H  Q  D  W  T  W  L  F  Y  *  A  N  E  V  *  H  G  R  G  C  S  C  F  G  C  S  K  S  S  W  S  D  K  T  R  W  S  R   : G  A  F  H  C  C  S  L  *  E  Y  D  Q  W  D  R  H  E  A  W  R  H  Y  H  C  F  K  W  E  D  N  *   : G  *  Q  H  G  C  *  G  *  T  H  T  C  *  C  V  G  I  C  L  *  P  R  C  R  K   : D  S  *  F  G  N  I  N  W  C  L  C  G  C  S  W  A  F  N  C  W :   Y  F  Y  T  *  R  *  P  S  *  G  G  G  C  S  F  *  G  K  R  *  K  T  M  E  V  A  D  G  G  *  L  L  G  L  Y  E  I  R  S  G  *  Y  G  E  H  G  R  S  S  R  W  C  D  N  R  C  S  L  P  E  A   : V  C  *  R  E  G  P  M  D  A  Y  R  L  S  W  S  C  L  E  *  *  K  E  K  R  H  G  F  W  C  F  N  F  G  G  M  G  A  E  E  L  Y  K  L  E  P  V  I  I  *  W  L  K  H  M  R  E  L  C  F  T  I  L  *  E  K  K  T  Y  E  K  L  *  S  Q  G  T  Y  G  C  L  R  K  E  F  A  S  S  F  Y  E  *  I  W  G  E  N  G  G  K  E  K :   K  K  T  K  K  K  K  T  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98976" stop="99242"/>
                    <exon start="101489" stop="101903"/>
                    <exon start="101985" stop="102179"/>
                    <exon start="102265" stop="102490"/>
                    <exon start="102633" stop="102759"/>
                    <exon start="102857" stop="102952"/>
                    <exon start="103659" stop="103736"/>
                    <exon start="104247" stop="104307"/>
                    <exon start="104674" stop="104861"/>
                    <exon start="105424" stop="105555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1782</number_coding_nucleotides>
                  <number_encoded_amino_acids>594</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFRSLYLHINTQKIPLSMAALRVSSALACSSSSSFHSYPSIFTKFQSSPIWSFSISVTPLCSRRAKRMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLGTFEDNRFKSESKKPTLKSLDILGLGTGPEIEKKIKYAADVCAGVILGRELVNAPANVLTPAVLAEEAKKIASTYSDVFSANILDVEQCKELKMGSYLAVAAASANPAHFIHLCYKPSSGEIKKKIALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGAAAVLGAAKALGQIKPAGVEVHFIVAACENMISGTGMRPGDIITASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIVDLATLTGACVVALGPSIAGIFTPSDDLAKEVVAASEVSGEKLWRLPMEDSYWDSMKSGVADMVNTGGRPGGAITAALFLKQFVNEKVQWMHIDLAGPVWSDKKKNATGFGVSTLVEWVLKNSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="96865" e_stop="96968"/>
            <exon e_start="98267" e_stop="98306"/>
            <exon e_start="98560" e_stop="98581"/>
            <exon e_start="99103" e_stop="99242"/>
            <exon e_start="101489" e_stop="101903"/>
            <exon e_start="101985" e_stop="102179"/>
            <exon e_start="102265" e_stop="102490"/>
            <exon e_start="102633" e_stop="102759"/>
            <exon e_start="102857" e_stop="102952"/>
            <exon e_start="103659" e_stop="103736"/>
            <exon e_start="104247" e_stop="104307"/>
            <exon e_start="104674" e_stop="104861"/>
            <exon e_start="105424" e_stop="105806"/>
            <exon e_start="108277" e_stop="108306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.700"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.989" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.767"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="96865" e_stop="96968" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96969" i_stop="98266" i_length="1298"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="98267" e_stop="98306" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98307" i_stop="98559" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.682">
            <gDNA_exon_boundary e_start="98560" e_stop="98581" e_length="22"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98582" i_stop="99102" i_length="521"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99103" e_stop="99242" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.961">
            <gDNA_intron_boundary i_start="99243" i_stop="101488" i_length="2246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="101489" e_stop="101903" e_length="415"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="101904" i_stop="101984" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="101985" e_stop="102179" e_length="195"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="102180" i_stop="102264" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="102265" e_stop="102490" e_length="226"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102491" i_stop="102632" i_length="142"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="102633" e_stop="102759" e_length="127"/>
          </exon>
          <intron i_serial="8" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102760" i_stop="102856" i_length="97"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="102857" e_stop="102952" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102953" i_stop="103658" i_length="706"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="103659" e_stop="103736" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.938" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103737" i_stop="104246" i_length="510"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="104247" e_stop="104307" e_length="61"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104308" i_stop="104673" i_length="366"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="104674" e_stop="104861" e_length="188"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="104862" i_stop="105423" i_length="562"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="105424" e_stop="105806" e_length="383"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105807" i_stop="108276" i_length="2470"/>
          </intron>
          <exon e_serial="14" e_score="0.767">
            <gDNA_exon_boundary e_start="108277" e_stop="108306" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96865" stop="96968"/>
              <exon start="98267" stop="98306"/>
              <exon start="98560" stop="98581"/>
              <exon start="99103" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99120" stop="99242"/>
              <exon start="101489" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99176" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99181" stop="99242"/>
              <exon start="101489" stop="101903"/>
              <exon start="101985" stop="102179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101580" stop="101903"/>
              <exon start="101985" stop="102159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101622" stop="101903"/>
              <exon start="101985" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101639" stop="101903"/>
              <exon start="101985" stop="102175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101678" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101702" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101855" stop="101903"/>
              <exon start="101985" stop="102179"/>
              <exon start="102265" stop="102411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102039" stop="102179"/>
              <exon start="102265" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102403" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102424" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102468" stop="102490"/>
              <exon start="102633" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102661" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102665" stop="102759"/>
              <exon start="102857" stop="102952"/>
              <exon start="103659" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103681" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103700" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256468" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103704" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257965" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103716" stop="103736"/>
              <exon start="104247" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252952" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104274" stop="104307"/>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104674" stop="104861"/>
              <exon start="105424" stop="105712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104689" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104697" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104741" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104751" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104767" stop="104861"/>
              <exon start="105424" stop="105726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104771" stop="104861"/>
              <exon start="105424" stop="105713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104781" stop="104861"/>
              <exon start="105424" stop="105806"/>
              <exon start="108277" stop="108306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251791" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104803" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104803" stop="104861"/>
              <exon start="105424" stop="105737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104822" stop="104861"/>
              <exon start="105424" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104846" stop="104861"/>
              <exon start="105424" stop="105735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAAAACTTTCAG : CGTTTATATTAATAGTCATAATATTGGTTTTTCTAAAAAA : AAAAAGAAAATAATTGATGATT : CTAAATTTCAATCTAGTCCCATCTGGTCTTTTTCAATTTCAGTTACACCCTTGTGTTCAAGAAGAGCTAAAAGAATGGCTCATTCTATTGCTCGTGATACTCTTGGTCTTACTCATACTAATCAAAGTGATGCTCCTAAG : ATTTCATTTGCTGCTAAAGAGATTGATCTGGTGGAATGGAAAGGAGACATACTTACAGTAGGTGCCACAGAGAAGGACTTGGCTAGAGACGGGAATTCTAAGTTCCAGAATCCACTATTGCAAAAGCTAGATTCCAAATTGAGTGGCTTATTGTCTGAAGCTTCATCTGAGGAGGATTTTAGTGGAAAGGCTGGACAATCCACAATTTTGAGGCTTCCTGGTCTTGGCTCAAAAAGGATTGCTCTAGTTGGGCTTGGCTCACCAACATCATCAACTGCTGCTTATCGCTGTTTAGGGGAGGCTGCTGCTGCAGCTGCCAAGTCTGCTCAGGCTAGTAATATCGCCATTGCTCTTGCTTCTACGGATGGACTCTCTGCAGAGTTGAAGCTTAGCTCTGCCTCTGCCATAACAACTG : GAGCTGTGCTGGGGACATTTGAAGATAATAGGTTTAAGTCAGAGTCAAAGAAACCAACATTGAAATCTTTGGATATTCTTGGACTGGGTACTGGACCTGAGATAGAGAAGAAAATCAAGTATGCAGCAGATGTCTGTGCAGGTGTTATACTCGGAAGAGAGCTTGTCAATGCACCCGCCAATGTTCTTACGCCTG : CGGTACTTGCTGAAGAGGCCAAAAAGATTGCGTCCACTTATAGCGATGTCTTTTCTGCAAACATCTTGGATGTTGAGCAGTGCAAAGAATTGAAAATGGGATCCTATTTAGCTGTCGCTGCAGCTTCTGCAAATCCTGCTCATTTCATCCATTTGTGTTATAAGCCTAGTAGTGGAGAAATAAAAAAGAAGATAGCCTTGGTTGGAAAGGGATTAACTTTTGACAG : TGGTGGCTACAACATCAAGACTGGACCTGGTTGTTCTATTGAGCTAATGAAGTTTGACATGGGAGGGGCTGCAGCTGTTTTGGGTGCAGCAAAAGCTCTTGGTCAGATAAAACCCGCTGGAGTAGAG : GTGCATTTCATTGTTGCAGCTTGTGAGAATATGATCAGTGGGACAGGCATGAGGCCTGGAGACATTATCACTGCTTCAAATGGGAAGACAATTGAG : GTTAACAACACGGATGCTGAGGGTAGACTCACACTTGCTGATGCGTTGGTATATGCCTGTAACCAAGGTGTAGAAAAG : ATAGTTGATTTGGCAACATTAACTGGTGCTTGTGTGGTTGCTCTTGGGCCTTCAATTGCTG : GTATTTTTACACCTAGCGATGACCTAGCTAAGGAGGTGGTTGCAGCTTCTGAGGTAAGCGGTGAAAAACTATGGAGGTTGCCGATGGAGGATAGCTACTGGGACTCTATGAAATCAGGAGTGGCTGATATGGTGAACACGGGAGGTCGTCCAGGTGGTGCGATAACCGCTGCTCTCTTCCTGAAGCAG : TTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTACATATGGAATTTATTACCCCTATCCT : AAAAAAAAAACAAAAAAAAATTTAAAAATT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  G  K  T  F  S :   V  Y  I  N  S  H  N  I  G  F  S  K  K  :  K  K  K  I  I  D  D   : S  K  F  Q  S  S  P  I  W  S  F  S  I  S  V  T  P  L  C  S  R  R  A  K  R  M  A  H  S  I  A  R  D  T  L  G  L  T  H  T  N  Q  S  D  A  P  K  :  I  S  F  A  A  K  E  I  D  L  V  E  W  K  G  D  I  L  T  V  G  A  T  E  K  D  L  A  R  D  G  N  S  K  F  Q  N  P  L  L  Q  K  L  D  S  K  L  S  G  L  L  S  E  A  S  S  E  E  D  F  S  G  K  A  G  Q  S  T  I  L  R  L  P  G  L  G  S  K  R  I  A  L  V  G  L  G  S  P  T  S  S  T  A  A  Y  R  C  L  G  E  A  A  A  A  A  A  K  S  A  Q  A  S  N  I  A  I  A  L  A  S  T  D  G  L  S  A  E  L  K  L  S  S  A  S  A  I  T  T   : G  A  V  L  G  T  F  E  D  N  R  F  K  S  E  S  K  K  P  T  L  K  S  L  D  I  L  G  L  G  T  G  P  E  I  E  K  K  I  K  Y  A  A  D  V  C  A  G  V  I  L  G  R  E  L  V  N  A  P  A  N  V  L  T  P   : A  V  L  A  E  E  A  K  K  I  A  S  T  Y  S  D  V  F  S  A  N  I  L  D  V  E  Q  C  K  E  L  K  M  G  S  Y  L  A  V  A  A  A  S  A  N  P  A  H  F  I  H  L  C  Y  K  P  S  S  G  E  I  K  K  K  I  A  L  V  G  K  G  L  T  F  D  S :   G  G  Y  N  I  K  T  G  P  G  C  S  I  E  L  M  K  F  D  M  G  G  A  A  A  V  L  G  A  A  K  A  L  G  Q  I  K  P  A  G  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  G  T  G  M  R  P  G  D  I  I  T  A  S  N  G  K  T  I  E  :  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  V  Y  A  C  N  Q  G  V  E  K  :  I  V  D  L  A  T  L  T  G  A  C  V  V  A  L  G  P  S  I  A   : G  I  F  T  P  S  D  D  L  A  K  E  V  V  A  A  S  E  V  S  G  E  K  L  W  R  L  P  M  E  D  S  Y  W  D  S  M  K  S  G  V  A  D  M  V  N  T  G  G  R  P  G  G  A  I  T  A  A  L  F  L  K  Q  :  F  V  N  E  K  V  Q  W  M  H  I  D  L  A  G  P  V  W  S  D  K  K  K  N  A  T  G  F  G  V  S  T  L  V  E  W  V  L  K  N  S  T  N  *  N  Q  S  S  S  D  G  *  N  I  *  G  S  Y  V  L  P  F  Y  K  K  K  K  L  M  K  S  C  N  L  K  G  L  M  D  V  *  E  K  N  L  H  Q  V  F  M  N  K  F  G  V  K  M  V  E  K  K  R  H  *  *  T  *  I  L  I  Y  K  M  P  N  I  A  I  L  H  M  E  F  I  T  P  I  L :   K  K  K  Q  K  K  I  *  K   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  A  K  L  S   : A  F  I  L  I  V  I  I  L  V  F  L  K  K :   K  R  K  *  L  M  I  :  L  N  F  N  L  V  P  S  G  L  F  Q  F  Q  L  H  P  C  V  Q  E  E  L  K  E  W  L  I  L  L  L  V  I  L  L  V  L  L  I  L  I  K  V  M  L  L  R :   F  H  L  L  L  K  R  L  I  W  W  N  G  K  E  T  Y  L  Q  *  V  P  Q  R  R  T  W  L  E  T  G  I  L  S  S  R  I  H  Y  C  K  S  *  I  P  N  *  V  A  Y  C  L  K  L  H  L  R  R  I  L  V  E  R  L  D  N  P  Q  F  *  G  F  L  V  L  A  Q  K  G  L  L  *  L  G  L  A  H  Q  H  H  Q  L  L  L  I  A  V  *  G  R  L  L  L  Q  L  P  S  L  L  R  L  V  I  S  P  L  L  L  L  L  R  M  D  S  L  Q  S  *  S  L  A  L  P  L  P  *  Q  L  :  E  L  C  W  G  H  L  K  I  I  G  L  S  Q  S  Q  R  N  Q  H  *  N  L  W  I  F  L  D  W  V  L  D  L  R  *  R  R  K  S  S  M  Q  Q  M  S  V  Q  V  L  Y  S  E  E  S  L  S  M  H  P  P  M  F  L  R  L  :  R  Y  L  L  K  R  P  K  R  L  R  P  L  I  A  M  S  F  L  Q  T  S  W  M  L  S  S  A  K  N  *  K  W  D  P  I  *  L  S  L  Q  L  L  Q  I  L  L  I  S  S  I  C  V  I  S  L  V  V  E  K  *  K  R  R  *  P  W  L  E  R  D  *  L  L  T   : V  V  A  T  T  S  R  L  D  L  V  V  L  L  S  *  *  S  L  T  W  E  G  L  Q  L  F  W  V  Q  Q  K  L  L  V  R  *  N  P  L  E  *  R :   C  I  S  L  L  Q  L  V  R  I  *  S  V  G  Q  A  *  G  L  E  T  L  S  L  L  Q  M  G  R  Q  L  R :   L  T  T  R  M  L  R  V  D  S  H  L  L  M  R  W  Y  M  P  V  T  K  V  *  K  R :   *  L  I  W  Q  H  *  L  V  L  V  W  L  L  L  G  L  Q  L  L  :  V  F  L  H  L  A  M  T  *  L  R  R  W  L  Q  L  L  R  *  A  V  K  N  Y  G  G  C  R  W  R  I  A  T  G  T  L  *  N  Q  E  W  L  I  W  *  T  R  E  V  V  Q  V  V  R  *  P  L  L  S  S  *  S  S :   L  L  T  R  R  S  N  G  C  I  S  T  *  L  V  L  S  G  V  I  K  R  K  T  P  R  V  L  V  F  Q  L  W  W  N  G  C  *  R  T  L  Q  I  R  T  S  H  H  L  M  A  K  T  Y  E  G  V  M  F  Y  H  F  I  R  K  K  N  L  *  K  V  V  I  S  R  D  L  W  M  F  E  K  R  I  C  I  K  F  L  *  I  N  L  G  *  K  W  W  K  R  K  G  T  S  R  L  R  Y  *  F  I  K  C  L  I  L  P  S  Y  I  W  N  L  L  P  L  S   : *  K  K  N  K  K  K  F  K  N  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  W  Q  N  F  Q  :  R  L  Y  *  *  S  *  Y  W  F  F  *  K   : K  K  E  N  N  *  *  F :   *  I  S  I  *  S  H  L  V  F  F  N  F  S  Y  T  L  V  F  K  K  S  *  K  N  G  S  F  Y  C  S  *  Y  S  W  S  Y  S  Y  *  S  K  *  C  S  *   : D  F  I  C  C  *  R  D  *  S  G  G  M  E  R  R  H  T  Y  S  R  C  H  R  E  G  L  G  *  R  R  E  F  *  V  P  E  S  T  I  A  K  A  R  F  Q  I  E  W  L  I  V  *  S  F  I  *  G  G  F  *  W  K  G  W  T  I  H  N  F  E  A  S  W  S  W  L  K  K  D  C  S  S  W  A  W  L  T  N  I  I  N  C  C  L  S  L  F  R  G  G  C  C  C  S  C  Q  V  C  S  G  *  *  Y  R  H  C  S  C  F  Y  G  W  T  L  C  R  V  E  A  *  L  C  L  C  H  N  N  W :   S  C  A  G  D  I  *  R  *  *  V  *  V  R  V  K  E  T  N  I  E  I  F  G  Y  S  W  T  G  Y  W  T  *  D  R  E  E  N  Q  V  C  S  R  C  L  C  R  C  Y  T  R  K  R  A  C  Q  C  T  R  Q  C  S  Y  A  C :   G  T  C  *  R  G  Q  K  D  C  V  H  L  *  R  C  L  F  C  K  H  L  G  C  *  A  V  Q  R  I  E  N  G  I  L  F  S  C  R  C  S  F  C  K  S  C  S  F  H  P  F  V  L  *  A  *  *  W  R  N  K  K  E  D  S  L  G  W  K  G  I  N  F  *  Q  :  W  W  L  Q  H  Q  D  W  T  W  L  F  Y  *  A  N  E  V  *  H  G  R  G  C  S  C  F  G  C  S  K  S  S  W  S  D  K  T  R  W  S  R   : G  A  F  H  C  C  S  L  *  E  Y  D  Q  W  D  R  H  E  A  W  R  H  Y  H  C  F  K  W  E  D  N  *   : G  *  Q  H  G  C  *  G  *  T  H  T  C  *  C  V  G  I  C  L  *  P  R  C  R  K   : D  S  *  F  G  N  I  N  W  C  L  C  G  C  S  W  A  F  N  C  W :   Y  F  Y  T  *  R  *  P  S  *  G  G  G  C  S  F  *  G  K  R  *  K  T  M  E  V  A  D  G  G  *  L  L  G  L  Y  E  I  R  S  G  *  Y  G  E  H  G  R  S  S  R  W  C  D  N  R  C  S  L  P  E  A   : V  C  *  R  E  G  P  M  D  A  Y  R  L  S  W  S  C  L  E  *  *  K  E  K  R  H  G  F  W  C  F  N  F  G  G  M  G  A  E  E  L  Y  K  L  E  P  V  I  I  *  W  L  K  H  M  R  E  L  C  F  T  I  L  *  E  K  K  T  Y  E  K  L  *  S  Q  G  T  Y  G  C  L  R  K  E  F  A  S  S  F  Y  E  *  I  W  G  E  N  G  G  K  E  K  A  L  V  D  L  D  I  D  L  *  N  A  *  Y  C  H  L  T  Y  G  I  Y  Y  P  Y  P  :  K  K  K  T  K  K  N  L  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96865" stop="96968"/>
                    <exon start="98267" stop="98306"/>
                    <exon start="98560" stop="98581"/>
                    <exon start="99103" stop="99242"/>
                    <exon start="101489" stop="101903"/>
                    <exon start="101985" stop="102179"/>
                    <exon start="102265" stop="102490"/>
                    <exon start="102633" stop="102759"/>
                    <exon start="102857" stop="102952"/>
                    <exon start="103659" stop="103736"/>
                    <exon start="104247" stop="104307"/>
                    <exon start="104674" stop="104861"/>
                    <exon start="105424" stop="105555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1821</number_coding_nucleotides>
                  <number_encoded_amino_acids>607</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFGKTFSVYINSHNIGFSKKKKKIIDDSKFQSSPIWSFSISVTPLCSRRAKRMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLGTFEDNRFKSESKKPTLKSLDILGLGTGPEIEKKIKYAADVCAGVILGRELVNAPANVLTPAVLAEEAKKIASTYSDVFSANILDVEQCKELKMGSYLAVAAASANPAHFIHLCYKPSSGEIKKKIALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGAAAVLGAAKALGQIKPAGVEVHFIVAACENMISGTGMRPGDIITASNGKTIEVNNTDAEGRLTLADALVYACNQGVEKIVDLATLTGACVVALGPSIAGIFTPSDDLAKEVVAASEVSGEKLWRLPMEDSYWDSMKSGVADMVNTGGRPGGAITAALFLKQFVNEKVQWMHIDLAGPVWSDKKKNATGFGVSTLVEWVLKNSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="105422" e_stop="105781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="105422" e_stop="105781" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105422" stop="105781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105422" stop="105771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221537" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTGTTAACGAGAAGGTCCAATGGATGCATATCGACTTAGCTGGTCCTGTCTGGAGTGATAAAAAGAAAAACGCCACGGGTTTTGGTGTTTCAACTTTGGTGGAATGGGTGCTGAAGAACTCTACAAATTAGAACCAGTCATCATCTGATGGCTAAAACATATGAGGGAGTTATGTTTTACCATTTTATAAGAAAAAAAAACTTATGAAAAGTTGTAATCTCAAGGGACTTATGGATGTTTGAGAAAAGAATTTGCATCAAGTTTTTATGAATAAATTTGGGGTGAAAATGGTGGAAAAGAAAAGGCACTAGTAGACTTAGATATTGATTTATAAAATGCCTAATATTGCCATCTTAC</gDNA_template>
            <first_frame> S  L  L  T  R  R  S  N  G  C  I  S  T  *  L  V  L  S  G  V  I  K  R  K  T  P  R  V  L  V  F  Q  L  W  W  N  G  C  *  R  T  L  Q  I  R  T  S  H  H  L  M  A  K  T  Y  E  G  V  M  F  Y  H  F  I  R  K  K  N  L  *  K  V  V  I  S  R  D  L  W  M  F  E  K  R  I  C  I  K  F  L  *  I  N  L  G  *  K  W  W  K  R  K  G  T  S  R  L  R  Y  *  F  I  K  C  L  I  L  P  S  Y </first_frame>
            <second_frame>  V  C  *  R  E  G  P  M  D  A  Y  R  L  S  W  S  C  L  E  *  *  K  E  K  R  H  G  F  W  C  F  N  F  G  G  M  G  A  E  E  L  Y  K  L  E  P  V  I  I  *  W  L  K  H  M  R  E  L  C  F  T  I  L  *  E  K  K  T  Y  E  K  L  *  S  Q  G  T  Y  G  C  L  R  K  E  F  A  S  S  F  Y  E  *  I  W  G  E  N  G  G  K  E  K  A  L  V  D  L  D  I  D  L  *  N  A  *  Y  C  H  L   </second_frame>
            <third_frame>   F  V  N  E  K  V  Q  W  M  H  I  D  L  A  G  P  V  W  S  D  K  K  K  N  A  T  G  F  G  V  S  T  L  V  E  W  V  L  K  N  S  T  N  *  N  Q  S  S  S  D  G  *  N  I  *  G  S  Y  V  L  P  F  Y  K  K  K  K  L  M  K  S  C  N  L  K  G  L  M  D  V  *  E  K  N  L  H  Q  V  F  M  N  K  F  G  V  K  M  V  E  K  K  R  H  *  *  T  *  I  L  I  Y  K  M  P  N  I  A  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="113430" PGL_stop="112623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113430" e_stop="112623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="113430" e_stop="112623" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113430" stop="112623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGACTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  D  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  T  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113428" stop="112625"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQTVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="114089" PGL_stop="113441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114089" e_stop="113441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="114089" e_stop="113441" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114089" stop="113441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114088" stop="113704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114088" stop="113441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="120998" PGL_stop="117375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119669"/>
            <exon e_start="118911" e_stop="118896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119669" e_length="296"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119668" i_stop="118912" i_length="757"/>
          </intron>
          <exon e_serial="7" e_score="0.875">
            <gDNA_exon_boundary e_start="118911" e_stop="118896" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120364" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119669"/>
              <exon start="118911" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120364" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120142" stop="120064"/>
              <exon start="119964" stop="119669"/>
              <exon start="118911" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120126" stop="120064"/>
              <exon start="119964" stop="119669"/>
              <exon start="118911" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTA : AAAAAGAAATAAAAAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S  * :   K  R  N  K  K </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L   : K  K  E  I  K   </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L  :  K  K  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119670"/>
            <exon e_start="118919" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.741"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119670" e_length="295"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119669" i_stop="118920" i_length="750"/>
          </intron>
          <exon e_serial="7" e_score="0.741">
            <gDNA_exon_boundary e_start="118919" e_stop="118893" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118919" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120153" stop="120064"/>
              <exon start="119964" stop="119669"/>
              <exon start="118911" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120141" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118919" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120108" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118919" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT : TAAAATTTAAAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   : L  K  F  K  K  K  *  K  R  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  :  *  N  L  K  R  N  K  K  E </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  F :   K  I  *  K  E  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119568"/>
            <exon e_start="118919" e_stop="118880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="119964" e_stop="119568" e_length="397"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119567" i_stop="118920" i_length="648"/>
          </intron>
          <exon e_serial="7" e_score="0.650">
            <gDNA_exon_boundary e_start="118919" e_stop="118880" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120147" stop="120064"/>
              <exon start="119964" stop="119568"/>
              <exon start="118919" stop="118880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120145" stop="120064"/>
              <exon start="119964" stop="119639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTTATTTACGTATGTCTGATAGAGATTATATTCACTCTAGTATCGTAACTTGGAGATGAAAGAGATATATATTTGTTTTACTGCTTGATGATTTTGTTGAACAAG : TAAAATTTAAAAAGAAATAAAAAAGAATTGGTAATTCACT</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S  Y  L  R  M  S  D  R  D  Y  I  H  S  S  I  V  T  W  R  *  K  R  Y  I  F  V  L  L  L  D  D  F  V  E  Q   : V  K  F  K  K  K  *  K  R  I  G  N  S   </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  I  Y  V  C  L  I  E  I  I  F  T  L  V  S  *  L  G  D  E  R  D  I  Y  L  F  Y  C  L  M  I  L  L  N  K  :  *  N  L  K  R  N  K  K  E  L  V  I  H  </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L  F  T  Y  V  *  *  R  L  Y  S  L  *  Y  R  N  L  E  M  K  E  I  Y  I  C  F  T  A  *  *  F  C  *  T  S :   K  I  *  K  E  I  K  K  N  W  *  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119670"/>
            <exon e_start="118921" e_stop="118895"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.704"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119670" e_length="295"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119669" i_stop="118922" i_length="748"/>
          </intron>
          <exon e_serial="7" e_score="0.704">
            <gDNA_exon_boundary e_start="118921" e_stop="118895" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120080" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118921" stop="118895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT : ACTAAAATTTAAAAAGAAATAAAAAAG</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   : Y  *  N  L  K  R  N  K  K  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  :  T  K  I  *  K  E  I  K  K </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L :   L  K  F  K  K  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119670"/>
            <exon e_start="118911" e_stop="118894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119670" e_length="295"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119669" i_stop="118912" i_length="758"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="118911" e_stop="118894" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120127" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118911" stop="118894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT : AAAAAGAAATAAAAAAGA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   : *  K  E  I  K  K  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  :  K  K  K  *  K  R </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L :   K  R  N  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119670"/>
            <exon e_start="118910" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.833"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119670" e_length="295"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119669" i_stop="118911" i_length="759"/>
          </intron>
          <exon e_serial="7" e_score="0.833">
            <gDNA_exon_boundary e_start="118910" e_stop="118893" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120174" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118910" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120174" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118910" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT : AAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   : *  K  K  *  K  R  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  :  K  R  N  K  K  E </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L :   K  E  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119670"/>
            <exon e_start="118905" e_stop="118890"/>
            <exon e_start="117414" e_stop="117375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.644" acc_prob="0.000" e_score="0.688"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="119964" e_stop="119670" e_length="295"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119669" i_stop="118906" i_length="764"/>
          </intron>
          <exon e_serial="7" e_score="0.688">
            <gDNA_exon_boundary e_start="118905" e_stop="118890" e_length="16"/>
          </exon>
          <intron i_serial="7" don_prob="0.644" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118889" i_stop="117415" i_length="1475"/>
          </intron>
          <exon e_serial="8" e_score="0.700">
            <gDNA_exon_boundary e_start="117414" e_stop="117375" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120589" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120250" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120196" stop="120064"/>
              <exon start="119964" stop="119686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120188" stop="120064"/>
              <exon start="119964" stop="119670"/>
              <exon start="118905" stop="118890"/>
              <exon start="117414" stop="117375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120149" stop="120064"/>
              <exon start="119964" stop="119678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAAATTTATTATTCCCGTCTT : AAATAAAAAAGAATTG : TATAAAAAAAACTTATATTCAAAAAAAAAAAAAGAGAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  N  L  L  F  P  S   : *  I  K  K  N  C :   I  K  K  T  Y  I  Q  K  K  K  K  R  E </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  I  Y  Y  S  R  L  :  K  *  K  R  I   : V  *  K  K  L  I  F  K  K  K  K  R  E   </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K  F  I  I  P  V  L :   N  K  K  E  L  :  Y  K  K  N  L  Y  S  K  K  K  K  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118910" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.867"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118911" i_length="777"/>
          </intron>
          <exon e_serial="7" e_score="0.867">
            <gDNA_exon_boundary e_start="118910" e_stop="118893" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120195" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120192" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120174" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120146" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120141" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  K  K  *  K  R  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  K  R  N  K  K  E </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   K  E  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118911" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118912" i_length="776"/>
          </intron>
          <exon e_serial="7" e_score="0.842">
            <gDNA_exon_boundary e_start="118911" e_stop="118893" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120188" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118911" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120146" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118911" stop="118894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AAAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  K  E  I  K  K   </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  K  K  K  *  K  R  </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   K  R  N  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118923" e_stop="118894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118924" i_length="764"/>
          </intron>
          <exon e_serial="7" e_score="0.733">
            <gDNA_exon_boundary e_start="118923" e_stop="118894" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118923" stop="118894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AAACTAAAATTTAAAAAGAAATAAAAAAGA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  T  K  I  *  K  E  I  K  K  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  K  L  K  F  K  K  K  *  K  R </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   N  *  N  L  K  R  N  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118922" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118923" i_length="765"/>
          </intron>
          <exon e_serial="7" e_score="0.733">
            <gDNA_exon_boundary e_start="118922" e_stop="118893" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120197" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118922" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AACTAAAATTTAAAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  L  K  F  K  K  K  *  K  R  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  N  *  N  L  K  R  N  K  K  E </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   T  K  I  *  K  E  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119688"/>
            <exon e_start="118905" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="119964" e_stop="119688" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119687" i_stop="118906" i_length="782"/>
          </intron>
          <exon e_serial="7" e_score="0.846">
            <gDNA_exon_boundary e_start="118905" e_stop="118893" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120371" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120218" stop="120064"/>
              <exon start="119964" stop="119688"/>
              <exon start="118905" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA : AAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *   : K  I  K  K   </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E  :  K  *  K  R  </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M  K :   N  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="13">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119693"/>
            <exon e_start="118910" e_stop="118896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.964">
            <gDNA_exon_boundary e_start="119964" e_stop="119693" e_length="272"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119692" i_stop="118911" i_length="782"/>
          </intron>
          <exon e_serial="7" e_score="0.933">
            <gDNA_exon_boundary e_start="118910" e_stop="118896" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120139" stop="120064"/>
              <exon start="119964" stop="119693"/>
              <exon start="118910" stop="118896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="13" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAA : AAAAGAAATAAAAAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K :   K  E  I  K   </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S   : K  K  K  *  K  </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  :  K  R  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="13" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="14">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119702"/>
            <exon e_start="118799" e_stop="118765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.686"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.964">
            <gDNA_exon_boundary e_start="119964" e_stop="119702" e_length="263"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119701" i_stop="118800" i_length="902"/>
          </intron>
          <exon e_serial="7" e_score="0.686">
            <gDNA_exon_boundary e_start="118799" e_stop="118765" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120114" stop="120064"/>
              <exon start="119964" stop="119702"/>
              <exon start="118799" stop="118765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="14" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTA : AAAAAAATTATACTTTCTATTATAAATTAAAAAAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  * :   K  K  L  Y  F  L  L  *  I  K  K  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F   : K  K  N  Y  T  F  Y  Y  K  L  K  K </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  :  K  K  I  I  L  S  I  I  N  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="14" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="15">
          <exon_coordinates>
            <exon e_start="120998" e_stop="120958"/>
            <exon e_start="120884" e_stop="120755"/>
            <exon e_start="120664" e_stop="120491"/>
            <exon e_start="120403" e_stop="120343"/>
            <exon e_start="120251" e_stop="120064"/>
            <exon e_start="119964" e_stop="119704"/>
            <exon e_start="118929" e_stop="118893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.960"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.649"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="120998" e_stop="120958" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="120957" i_stop="120885" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="120884" e_stop="120755" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="120754" i_stop="120665" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120664" e_stop="120491" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="120490" i_stop="120404" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120403" e_stop="120343" e_length="61"/>
          </exon>
          <intron i_serial="4" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="120342" i_stop="120252" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120251" e_stop="120064" e_length="188"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120063" i_stop="119965" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="119964" e_stop="119704" e_length="261"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119703" i_stop="118930" i_length="774"/>
          </intron>
          <exon e_serial="7" e_score="0.649">
            <gDNA_exon_boundary e_start="118929" e_stop="118893" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120998" stop="120958"/>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120884" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120879" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120866" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120790" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120788" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120785" stop="120755"/>
              <exon start="120664" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120604" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120597" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120578" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120546" stop="120491"/>
              <exon start="120403" stop="120343"/>
              <exon start="120251" stop="120064"/>
              <exon start="119964" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120227" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120199" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120191" stop="120064"/>
              <exon start="119964" stop="119715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120128" stop="120064"/>
              <exon start="119964" stop="119704"/>
              <exon start="118929" stop="118893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="15" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNGTTGGAAAGGGATTAACTTTTGACC : TTGGGGGCTACAACCTCCAAGGTCGGAGCTGGTTCGAGGATTGAGTTAATGAAGAATGACATGGGAGGGGCTGCTGCTGTTTTAGGTGCAGCAAAAAGCTTTTGGTGAAATTAGCCCTTCCAGAGTAGAG : GTGCATTTCATTGTCGCAGCATGTGAAAATATGATCAGTGCAGAAGGCATGAGGCCTGGAGACATTGTCACAGCTTCAAATGGTAAGACAATTGAGGTTAACAATACTGATGCTGAGGGTAGGCTCACACTTGCTGATGCTTTGATATATGCCTGTAACCAAGGTGTTGAGAAG : ATAATTGATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTG : GTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAA : TTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTT : TGCTTGAAACTAAAATTTAAAAAGAAATAAAAAAGAA</gDNA_template>
            <first_frame> F  F  F  F  F  C  W  K  G  I  N  F  *  P :   W  G  L  Q  P  P  R  S  E  L  V  R  G  L  S  *  *  R  M  T  W  E  G  L  L  L  F  *  V  Q  Q  K  A  F  G  E  I  S  P  S  R  V  E  :  V  H  F  I  V  A  A  C  E  N  M  I  S  A  E  G  M  R  P  G  D  I  V  T  A  S  N  G  K  T  I  E  V  N  N  T  D  A  E  G  R  L  T  L  A  D  A  L  I  Y  A  C  N  Q  G  V  E  K  :  I  I  D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A   : G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  :  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  :  C  L  K  L  K  F  K  K  K  *  K  R  </first_frame>
            <second_frame>  F  F  F  F  F  V  G  K  G  L  T  F  D   : L  G  G  Y  N  L  Q  G  R  S  W  F  E  D  *  V  N  E  E  *  H  G  R  G  C  C  C  F  R  C  S  K  K  L  L  V  K  L  A  L  P  E  *  R :   C  I  S  L  S  Q  H  V  K  I  *  S  V  Q  K  A  *  G  L  E  T  L  S  Q  L  Q  M  V  R  Q  L  R  L  T  I  L  M  L  R  V  G  S  H  L  L  M  L  *  Y  M  P  V  T  K  V  L  R  R :   *  L  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  :  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  N :   L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F :   A  *  N  *  N  L  K  R  N  K  K  E </second_frame>
            <third_frame>   F  F  F  F  L  L  E  R  D  *  L  L  T  :  L  G  A  T  T  S  K  V  G  A  G  S  R  I  E  L  M  K  N  D  M  G  G  A  A  A  V  L  G  A  A  K  S  F  W  *  N  *  P  F  Q  S  R   : G  A  F  H  C  R  S  M  *  K  Y  D  Q  C  R  R  H  E  A  W  R  H  C  H  S  F  K  W  *  D  N  *  G  *  Q  Y  *  C  *  G  *  A  H  T  C  *  C  F  D  I  C  L  *  P  R  C  *  E   : D  N  *  S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W :   C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T   : I  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T   : L  L  E  T  K  I  *  K  E  I  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="15" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120799" stop="120755"/>
                    <exon start="120664" stop="120491"/>
                    <exon start="120403" stop="120343"/>
                    <exon start="120251" stop="120064"/>
                    <exon start="119964" stop="119842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQQKAFGEISPSRVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACNQGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQFVDEKVQWLHLDVAGPVWSDEKKNATGYGVSTLVEWVLRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="16">
          <exon_coordinates>
            <exon e_start="120397" e_stop="119688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120397" e_stop="119688" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120397" stop="119901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119952" stop="119688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119924" stop="119696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="16" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGGCAACATTAACTGGTGCTATTATGGTTGCTCTTGGACCTTCAGTTGCTGGTATATTTGTTTGTGACTCTATTCTTTGTTTGGTACACGTTGTACGTCTACTCTGCTTGAACTTCATTGGATATCTCGTATACGAATACAGGTGCTTTTACACCTAATGATGACCTAGCAAGGGAGGTTGTTGAAGCTGCTGAGGCAAGTGGTGAAAAACTATGGAGGATGCCTATGGAGGAGAGTTACTGGGAGAGTATGAAATCAGGTGTGGCTGATATGATTAACTTGGGACCTGGTAATGGCGGTGCTATAACTGGTGCTCTCTTCCTCAAACAAGTACTCATCCCATCATCACTCTACGACTGACATTTTGGTACATTCTACATATCTTTAGTTTGAGACGAGAAACATGACATTTGGTCGTTGTCTTTGCAGTTTGTTGACGAGAAGGTTCAGTGGTTGCATCTCGACGTAGCTGGCCCCGTATGGAGCGATGAAAAGAAAAACGCCACGGGTTATGGTGTTTCAACTCTGGTGGAATGGGTGCTGAGGAACTAGTCAAGATGTTGATGGCTAAGCATATTAGGGACTCATGATGTTTGAGAAAATAAATGCATCAAGTTGTATGAATAAAGGCAATAGAATAGGCTTTCTTGTTTTCTAGATGAATAAAATGCCTAAATAAAATTGCCACTTTACCTTTTCAAATGAA</gDNA_template>
            <first_frame> D  L  A  T  L  T  G  A  I  M  V  A  L  G  P  S  V  A  G  I  F  V  C  D  S  I  L  C  L  V  H  V  V  R  L  L  C  L  N  F  I  G  Y  L  V  Y  E  Y  R  C  F  Y  T  *  *  *  P  S  K  G  G  C  *  S  C  *  G  K  W  *  K  T  M  E  D  A  Y  G  G  E  L  L  G  E  Y  E  I  R  C  G  *  Y  D  *  L  G  T  W  *  W  R  C  Y  N  W  C  S  L  P  Q  T  S  T  H  P  I  I  T  L  R  L  T  F  W  Y  I  L  H  I  F  S  L  R  R  E  T  *  H  L  V  V  V  F  A  V  C  *  R  E  G  S  V  V  A  S  R  R  S  W  P  R  M  E  R  *  K  E  K  R  H  G  L  W  C  F  N  S  G  G  M  G  A  E  E  L  V  K  M  L  M  A  K  H  I  R  D  S  *  C  L  R  K  *  M  H  Q  V  V  *  I  K  A  I  E  *  A  F  L  F  S  R  *  I  K  C  L  N  K  I  A  T  L  P  F  Q  M   </first_frame>
            <second_frame>  I  W  Q  H  *  L  V  L  L  W  L  L  L  D  L  Q  L  L  V  Y  L  F  V  T  L  F  F  V  W  Y  T  L  Y  V  Y  S  A  *  T  S  L  D  I  S  Y  T  N  T  G  A  F  T  P  N  D  D  L  A  R  E  V  V  E  A  A  E  A  S  G  E  K  L  W  R  M  P  M  E  E  S  Y  W  E  S  M  K  S  G  V  A  D  M  I  N  L  G  P  G  N  G  G  A  I  T  G  A  L  F  L  K  Q  V  L  I  P  S  S  L  Y  D  *  H  F  G  T  F  Y  I  S  L  V  *  D  E  K  H  D  I  W  S  L  S  L  Q  F  V  D  E  K  V  Q  W  L  H  L  D  V  A  G  P  V  W  S  D  E  K  K  N  A  T  G  Y  G  V  S  T  L  V  E  W  V  L  R  N  *  S  R  C  *  W  L  S  I  L  G  T  H  D  V  *  E  N  K  C  I  K  L  Y  E  *  R  Q  *  N  R  L  S  C  F  L  D  E  *  N  A  *  I  K  L  P  L  Y  L  F  K  *  </second_frame>
            <third_frame>   S  G  N  I  N  W  C  Y  Y  G  C  S  W  T  F  S  C  W  Y  I  C  L  *  L  Y  S  L  F  G  T  R  C  T  S  T  L  L  E  L  H  W  I  S  R  I  R  I  Q  V  L  L  H  L  M  M  T  *  Q  G  R  L  L  K  L  L  R  Q  V  V  K  N  Y  G  G  C  L  W  R  R  V  T  G  R  V  *  N  Q  V  W  L  I  *  L  T  W  D  L  V  M  A  V  L  *  L  V  L  S  S  S  N  K  Y  S  S  H  H  H  S  T  T  D  I  L  V  H  S  T  Y  L  *  F  E  T  R  N  M  T  F  G  R  C  L  C  S  L  L  T  R  R  F  S  G  C  I  S  T  *  L  A  P  Y  G  A  M  K  R  K  T  P  R  V  M  V  F  Q  L  W  W  N  G  C  *  G  T  S  Q  D  V  D  G  *  A  Y  *  G  L  M  M  F  E  K  I  N  A  S  S  C  M  N  K  G  N  R  I  G  F  L  V  F  *  M  N  K  M  P  K  *  N  C  H  F  T  F  S  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="16" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120282" stop="120034"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLDISYTNTGAFTPNDDLAREVVEAAEASGEKLWRMPMEESYWESMKSGVADMINLGPGNGGAITGALFLKQVLIPSSLYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="118893" PGL_stop="120398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118893" e_stop="118919"/>
            <exon e_start="119693" e_stop="120079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.741"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.741">
            <gDNA_exon_boundary e_start="118893" e_stop="118919" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118920" i_stop="119692" i_length="773"/>
          </intron>
          <exon e_serial="2" e_score="0.941">
            <gDNA_exon_boundary e_start="119693" e_stop="120079" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118893" stop="118919"/>
              <exon start="119693" stop="120079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228622" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTTTTATTTCTTTTTAAATTTTA : TTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTGTTTGAGGAAGAGA</gDNA_template>
            <first_frame> F  F  F  I  S  F  *  I  L  :  L  K  R  *  S  G  N  F  I  *  A  F  Y  S  S  R  K  Q  E  S  L  F  Y  C  L  Y  S  Y  N  L  M  H  L  F  S  Q  T  S  *  V  P  N  M  L  S  H  Q  H  L  D  *  F  L  S  T  H  S  T  R  V  E  T  P  *  P  V  A  F  F  F  S  S  L  H  T  G  P  A  T  S  R  C  N  H  *  T  F  S  S  T  N  C  K  D  N  D  Q  M  S  C  F  S  S  Q  T  K  D  M  *  N  V  P  K  C  Q  S  *  S  D  D  G  M  S  T  C  L  R  K  R </first_frame>
            <second_frame>  S  F  L  F  L  F  K  F  Y :   *  K  G  K  V  A  I  L  F  R  H  F  I  H  L  E  N  K  K  A  Y  S  I  A  F  I  H  T  T  *  C  I  Y  F  L  K  H  H  E  S  L  I  C  L  A  I  N  I  L  T  S  S  S  A  P  I  P  P  E  L  K  H  H  N  P  W  R  F  S  F  H  R  S  I  R  G  Q  L  R  R  D  A  T  T  E  P  S  R  Q  Q  T  A  K  T  T  T  K  C  H  V  S  R  L  K  L  K  I  C  R  M  Y  Q  N  V  S  R  R  V  M  M  G  *  V  L  V  *  G  R   </second_frame>
            <third_frame>   L  F  Y  F  F  L  N  F   : I  E  K  V  K  W  Q  F  Y  L  G  I  L  F  I  *  K  T  R  K  P  I  L  L  P  L  F  I  Q  L  D  A  F  I  F  S  N  I  M  S  P  *  Y  A  *  P  S  T  S  *  L  V  P  Q  H  P  F  H  Q  S  *  N  T  I  T  R  G  V  F  L  F  I  A  P  Y  G  A  S  Y  V  E  M  Q  P  L  N  L  L  V  N  K  L  Q  R  Q  R  P  N  V  M  F  L  V  S  N  *  R  Y  V  E  C  T  K  M  S  V  V  E  *  *  W  D  E  Y  L  F  E  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119784" stop="120059"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIYFLKHHESLICLAINILTSSSAPIPPELKHHNPWRFSFHRSIRGQLRRDATTEPSRQQTAKTTTKCHVSRLKLKICRMYQNVSRRVMMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119398" e_stop="119409"/>
            <exon e_start="119629" e_stop="120398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.078" acc_prob="0.000" e_score="0.833"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="119398" e_stop="119409" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.078" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119410" i_stop="119628" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="119629" e_stop="120398" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119398" stop="119409"/>
              <exon start="119629" stop="120398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541135" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAAAAAAAAA : GATACTAGAGTGAATATAATCTCTATCAGACATACGTAAATAAGACGGGAATAATAAATTTCATTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGTAGAATGTACCAAAATGTCAGTCGTAGAGTGATGATGGGATGAGTACTTGTTTGAGGAAGAGAGCACCAGTTATAGCACCGCCATTACCAGGTCCCAAGTTAATCATATCAGCCACACCTGATTTCATACTCTCCCAGTAACTCTCCTCCATAGGCATCCTCCATAGTTTTTCACCACTTGCCTCAGCAGCTTCAACAACCTCCCTTGCTAGGTCATCATTAGGTGTAAAAGCACCTGTATTCGTATACGAGATATCCAATGAAGTTCAAGCAGAGTAGACGTACAACGTGTACCAAACAAAGAATAGAGTCACAAACAAATATACCAGCAACTGAAGGTCCAAGAGCAACCATAATAGCACCAGTTAATGTTGCCAGATCA</gDNA_template>
            <first_frame> S  K  K  K  :  D  T  R  V  N  I  I  S  I  R  H  T  *  I  R  R  E  *  *  I  S  F  E  K  V  K  W  Q  F  Y  L  G  I  L  F  I  *  K  T  R  K  P  I  L  L  P  L  F  I  Q  L  D  A  F  I  F  S  N  I  M  S  P  *  Y  A  *  P  S  T  S  *  L  V  P  Q  H  P  F  H  Q  S  *  N  T  I  T  R  G  V  F  L  F  I  A  P  Y  G  A  S  Y  V  E  M  Q  P  L  N  L  L  V  N  K  L  Q  R  Q  R  P  N  V  M  F  L  V  S  N  *  R  Y  V  E  C  T  K  M  S  V  V  E  *  *  W  D  E  Y  L  F  E  E  E  S  T  S  Y  S  T  A  I  T  R  S  Q  V  N  H  I  S  H  T  *  F  H  T  L  P  V  T  L  L  H  R  H  P  P  *  F  F  T  T  C  L  S  S  F  N  N  L  P  C  *  V  I  I  R  C  K  S  T  C  I  R  I  R  D  I  Q  *  S  S  S  R  V  D  V  Q  R  V  P  N  K  E  *  S  H  K  Q  I  Y  Q  Q  L  K  V  Q  E  Q  P  *  *  H  Q  L  M  L  P  D   </first_frame>
            <second_frame>  A  K  K  K :   I  L  E  *  I  *  S  L  S  D  I  R  K  *  D  G  N  N  K  F  H  L  K  R  *  S  G  N  F  I  *  A  F  Y  S  S  R  K  Q  E  S  L  F  Y  C  L  Y  S  Y  N  L  M  H  L  F  S  Q  T  S  *  V  P  N  M  L  S  H  Q  H  L  D  *  F  L  S  T  H  S  T  R  V  E  T  P  *  P  V  A  F  F  F  S  S  L  H  T  G  P  A  T  S  R  C  N  H  *  T  F  S  S  T  N  C  K  D  N  D  Q  M  S  C  F  S  S  Q  T  K  D  M  *  N  V  P  K  C  Q  S  *  S  D  D  G  M  S  T  C  L  R  K  R  A  P  V  I  A  P  P  L  P  G  P  K  L  I  I  S  A  T  P  D  F  I  L  S  Q  *  L  S  S  I  G  I  L  H  S  F  S  P  L  A  S  A  A  S  T  T  S  L  A  R  S  S  L  G  V  K  A  P  V  F  V  Y  E  I  S  N  E  V  Q  A  E  *  T  Y  N  V  Y  Q  T  K  N  R  V  T  N  K  Y  T  S  N  *  R  S  K  S  N  H  N  S  T  S  *  C  C  Q  I  </second_frame>
            <third_frame>   Q  K  K   : R  Y  *  S  E  Y  N  L  Y  Q  T  Y  V  N  K  T  G  I  I  N  F  I  *  K  G  K  V  A  I  L  F  R  H  F  I  H  L  E  N  K  K  A  Y  S  I  A  F  I  H  T  T  *  C  I  Y  F  L  K  H  H  E  S  L  I  C  L  A  I  N  I  L  T  S  S  S  A  P  I  P  P  E  L  K  H  H  N  P  W  R  F  S  F  H  R  S  I  R  G  Q  L  R  R  D  A  T  T  E  P  S  R  Q  Q  T  A  K  T  T  T  K  C  H  V  S  R  L  K  L  K  I  C  R  M  Y  Q  N  V  S  R  R  V  M  M  G  *  V  L  V  *  G  R  E  H  Q  L  *  H  R  H  Y  Q  V  P  S  *  S  Y  Q  P  H  L  I  S  Y  S  P  S  N  S  P  P  *  A  S  S  I  V  F  H  H  L  P  Q  Q  L  Q  Q  P  P  L  L  G  H  H  *  V  *  K  H  L  Y  S  Y  T  R  Y  P  M  K  F  K  Q  S  R  R  T  T  C  T  K  Q  R  I  E  S  Q  T  N  I  P  A  T  E  G  P  R  A  T  I  I  A  P  V  N  V  A  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119784" stop="120059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIYFLKHHESLICLAINILTSSSAPIPPELKHHNPWRFSFHRSIRGQLRRDATTEPSRQQTAKTTTKCHVSRLKLKICRMYQNVSRRVMMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="118894" e_stop="118919"/>
            <exon e_start="119692" e_stop="120017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.731"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.731">
            <gDNA_exon_boundary e_start="118894" e_stop="118919" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="118920" i_stop="119691" i_length="772"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="119692" e_stop="120017" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118894" stop="118919"/>
              <exon start="119692" stop="120017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229294" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTTATTTCTTTTTAAATTTTA : TTTGAAAAGGTAAAGTGGCAATTTTATTTAGGCATTTTATTCATCTAGAAAACAAGAAAGCCTATTCTATTGCCTTTATTCATACAACTTGATGCATTTATTTTCTCAAACATCATGAGTCCCTAATATGCTTAGCCATCAACATCTTGACTAGTTCCTCAGCACCCATTCCACCAGAGTTGAAACACCATAACCCGTGGCGTTTTTCTTTTCATCGCTCCATACGGGGCCAGCTACGTCGAGATGCAACCACTGAACCTTCTCGTCAACAAACTGCAAAGACAACGACCAAATGTCATGTTTCTCGTCTCAAACTAAAGATATGT</gDNA_template>
            <first_frame> S  F  L  F  L  F  K  F  Y :   L  K  R  *  S  G  N  F  I  *  A  F  Y  S  S  R  K  Q  E  S  L  F  Y  C  L  Y  S  Y  N  L  M  H  L  F  S  Q  T  S  *  V  P  N  M  L  S  H  Q  H  L  D  *  F  L  S  T  H  S  T  R  V  E  T  P  *  P  V  A  F  F  F  S  S  L  H  T  G  P  A  T  S  R  C  N  H  *  T  F  S  S  T  N  C  K  D  N  D  Q  M  S  C  F  S  S  Q  T  K  D  M  </first_frame>
            <second_frame>  L  F  Y  F  F  L  N  F   : I  *  K  G  K  V  A  I  L  F  R  H  F  I  H  L  E  N  K  K  A  Y  S  I  A  F  I  H  T  T  *  C  I  Y  F  L  K  H  H  E  S  L  I  C  L  A  I  N  I  L  T  S  S  S  A  P  I  P  P  E  L  K  H  H  N  P  W  R  F  S  F  H  R  S  I  R  G  Q  L  R  R  D  A  T  T  E  P  S  R  Q  Q  T  A  K  T  T  T  K  C  H  V  S  R  L  K  L  K  I  C </second_frame>
            <third_frame>   F  F  I  S  F  *  I  L  :  F  E  K  V  K  W  Q  F  Y  L  G  I  L  F  I  *  K  T  R  K  P  I  L  L  P  L  F  I  Q  L  D  A  F  I  F  S  N  I  M  S  P  *  Y  A  *  P  S  T  S  *  L  V  P  Q  H  P  F  H  Q  S  *  N  T  I  T  R  G  V  F  L  F  I  A  P  Y  G  A  S  Y  V  E  M  Q  P  L  N  L  L  V  N  K  L  Q  R  Q  R  P  N  V  M  F  L  V  S  N  *  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119784" stop="120017"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIYFLKHHESLICLAINILTSSSAPIPPELKHHNPWRFSFHRSIRGQLRRDATTEPSRQQTAKTTTKCHVSRLKLKIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="121385" PGL_stop="121833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121385" e_stop="121833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="121385" e_stop="121833" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121385" stop="121833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATAGACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAAGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAATAATTTATGTATGAAAAAAAATTAAAATATAAATTGAACTTTGATAGAAGAATCATATATACCCTTAAATAATTTTTTAAGAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGATATATATGAGCCACTTTTATAACGAGGGGTTTATTAGCTCCAAATGACAAAGTTGAAGGGTATATCAGACCCTTTTCCCTTTAATTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  D  T  K  K  *  F  N  F  L  F  F  K  L  K  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  I  I  Y  V  *  K  K  I  K  I  *  I  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  *  E  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  D  K  D  I  Y  E  P  L  L  *  R  G  V  Y  *  L  Q  M  T  K  L  K  G  I  S  D  P  F  P  F  N   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  *  T  Q  K  N  S  L  I  F  Y  S  L  N  *  R  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  *  F  M  Y  E  K  K  L  K  Y  K  L  N  F  D  R  R  I  I  Y  T  L  K  *  F  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  I  R  I  Y  M  S  H  F  Y  N  E  G  F  I  S  S  K  *  Q  S  *  R  V  Y  Q  T  L  F  P  L  I  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  R  H  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  N  N  L  C  M  K  K  N  *  N  I  N  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  R  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  Y  I  *  A  T  F  I  T  R  G  L  L  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0180O10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="122870" PGL_stop="123640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122870" e_stop="123640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="122870" e_stop="123640" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122870" stop="123396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122873" stop="123640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122880" stop="123521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122880" stop="123511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122880" stop="123143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122888" stop="123238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122889" stop="123474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122938" stop="123243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTAAAGGAGCTTAGCCGTCGTTGAGTTTTACAAACCCTAGAGAGACAAAACCTAAACCTCAGTTTTTGGTTCCGATTTTGGGAATGCAGAGAGATGATAGGCAAATCCCTTCTTTCTAGTTTGATTTTCGGAGGCTTAAAGCCCCAAATTTCACTTCCCGGAGTTAGCCGGAATTGCCATCGGAATTGTCACCGGAAACACGTAGAAGACGGGTGAACTCATTCACCAAAACCCCCTTTTTCAGTTATAAACCAAAACCCATTCTTTTTTTCTTAACAAAAAGTATATACCCTTTTTGAATTTCGTTCGTCGGCGGCCGGAGTTTCCACCGGAAACACGTCGGAGACGAGTAAACCCACCTACCTCATTTCACTTCCATTTAAACCCATCAATTTTTTTTTCAAAAATCGAACACCCTTTTCGATCTTGCTTCAGAAAAGTTGCTAAATTTCGCAGAACCAGTGTTTTATAATGGGGACAGAAGAAAAATGTGCTGTTTTGTATGGTAAATATGAGCTCGGACGAGTTTTGGGTCAAGGTTCTTTCGCTAAAGTATACCATGCTCGTAACGTGGTAACAGGGGAGAATATAGCAATGAAAGTTGTTGGAAAAGAGAAGGTGATAAAAGTAGGAATGATGGAGCAAATCAAAAGAGAAATCTCCGTCATGAAAATGGTGAAACATCCAAACATAGTCGAGCTTCACGAAGTTATGGCAAGCAAAACGAAGATTTACTTCGCCATGGAATACGTTAAAGGCGGTGAATT</gDNA_template>
            <first_frame> K  P  K  G  A  *  P  S  L  S  F  T  N  P  R  E  T  K  P  K  P  Q  F  L  V  P  I  L  G  M  Q  R  D  D  R  Q  I  P  S  F  *  F  D  F  R  R  L  K  A  P  N  F  T  S  R  S  *  P  E  L  P  S  E  L  S  P  E  T  R  R  R  R  V  N  S  F  T  K  T  P  F  F  S  Y  K  P  K  P  I  L  F  F  L  T  K  S  I  Y  P  F  *  I  S  F  V  G  G  R  S  F  H  R  K  H  V  G  D  E  *  T  H  L  P  H  F  T  S  I  *  T  H  Q  F  F  F  Q  K  S  N  T  L  F  D  L  A  S  E  K  L  L  N  F  A  E  P  V  F  Y  N  G  D  R  R  K  M  C  C  F  V  W  *  I  *  A  R  T  S  F  G  S  R  F  F  R  *  S  I  P  C  S  *  R  G  N  R  G  E  Y  S  N  E  S  C  W  K  R  E  G  D  K  S  R  N  D  G  A  N  Q  K  R  N  L  R  H  E  N  G  E  T  S  K  H  S  R  A  S  R  S  Y  G  K  Q  N  E  D  L  L  R  H  G  I  R  *  R  R  *  I </first_frame>
            <second_frame>  N  L  K  E  L  S  R  R  *  V  L  Q  T  L  E  R  Q  N  L  N  L  S  F  W  F  R  F  W  E  C  R  E  M  I  G  K  S  L  L  S  S  L  I  F  G  G  L  K  P  Q  I  S  L  P  G  V  S  R  N  C  H  R  N  C  H  R  K  H  V  E  D  G  *  T  H  S  P  K  P  P  F  S  V  I  N  Q  N  P  F  F  F  S  *  Q  K  V  Y  T  L  F  E  F  R  S  S  A  A  G  V  S  T  G  N  T  S  E  T  S  K  P  T  Y  L  I  S  L  P  F  K  P  I  N  F  F  F  K  N  R  T  P  F  S  I  L  L  Q  K  S  C  *  I  S  Q  N  Q  C  F  I  M  G  T  E  E  K  C  A  V  L  Y  G  K  Y  E  L  G  R  V  L  G  Q  G  S  F  A  K  V  Y  H  A  R  N  V  V  T  G  E  N  I  A  M  K  V  V  G  K  E  K  V  I  K  V  G  M  M  E  Q  I  K  R  E  I  S  V  M  K  M  V  K  H  P  N  I  V  E  L  H  E  V  M  A  S  K  T  K  I  Y  F  A  M  E  Y  V  K  G  G  E   </second_frame>
            <third_frame>   T  *  R  S  L  A  V  V  E  F  Y  K  P  *  R  D  K  T  *  T  S  V  F  G  S  D  F  G  N  A  E  R  *  *  A  N  P  F  F  L  V  *  F  S  E  A  *  S  P  K  F  H  F  P  E  L  A  G  I  A  I  G  I  V  T  G  N  T  *  K  T  G  E  L  I  H  Q  N  P  L  F  Q  L  *  T  K  T  H  S  F  F  L  N  K  K  Y  I  P  F  L  N  F  V  R  R  R  P  E  F  P  P  E  T  R  R  R  R  V  N  P  P  T  S  F  H  F  H  L  N  P  S  I  F  F  S  K  I  E  H  P  F  R  S  C  F  R  K  V  A  K  F  R  R  T  S  V  L  *  W  G  Q  K  K  N  V  L  F  C  M  V  N  M  S  S  D  E  F  W  V  K  V  L  S  L  K  Y  T  M  L  V  T  W  *  Q  G  R  I  *  Q  *  K  L  L  E  K  R  R  *  *  K  *  E  *  W  S  K  S  K  E  K  S  P  S  *  K  W  *  N  I  Q  T  *  S  S  F  T  K  L  W  Q  A  K  R  R  F  T  S  P  W  N  T  L  K  A  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123321" stop="123638"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQNQCFIMGTEEKCAVLYGKYELGRVLGQGSFAKVYHARNVVTGENIAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKTKIYFAMEYVKGGE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123124" stop="123345"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKTHSFFLNKKYIPFLNFVRRRPEFPPETRRRRVNPPTSFHFHLNPSIFFSKIEHPFRSCFRKVAKFRRTSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="125966" PGL_stop="123741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125966" e_stop="125927"/>
            <exon e_start="124746" e_stop="123741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.347" e_score="0.625"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="125966" e_stop="125927" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.347">
            <gDNA_intron_boundary i_start="125926" i_stop="124747" i_length="1180"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="124746" e_stop="123741" e_length="1006"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125966" stop="125927"/>
              <exon start="124746" stop="123741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707149" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTATTATTGTTGTATTCTAAGTCATATAAATTCATAG : ATGAATTCAAGAGACATACTTCAGAGATGAAGTCTCAATTTCAAATCTAAACAATAACAAGAACAAAAACTAAACAAATGCAATTGCTCTAATAACATGAAACTCAAGCAATTGTTGGATTCTCAGGTGCGGATTTCCAAACAATGTCCTTGAGTGCTGGCCTAAGCTCTTTGCTGCAGAATTGATTATATTCCAATGTATCACCACAAGCTTTCTTCACCTCCACAACCAGAAATGAAGGTGTCACAGCAAATATATCAGCAGATATTCCCAACTTCCCTTTCCTCCCACTCTCTTGCCCCTGCAATCTAACACTAGAATCACTCCTTTTCAAGCTGAATTTCGACGTTTTAGCTACTTCCTCGAGCTTCGAAATCACACTACTAGCTGGCTTTGTTGTTGCAAATCTCAACTGTTCCTTCTCCTTCTTCTTCTTTTCCTCAAACAAAGGAGACAAATCAAACCCCTCCGACAATGAAATGATATGAAAAGCATTCAAAGACTCAATCTTTTTCGCCTTCCCTACACAATCTTCGTCTCCCACATGAGAAAACTCTTCCTCCACCTTACTCCTCAAAGTCCTTGGCACAGTCTTCTTGAACCAATTAGACTCCATAATCTTTGAAGCAGTAATTCGAGTTCTCGGATTCGGATCCAACATCTTTACAATCAACTTCTTTGCATCAGATGACATCCAAGGTGGACACTTGAAATCACCCTTGTGAATTTTCTTATACATAGCCATGATATTATCATCTTGAAATGGTAAAAAACCAGCTAAAAGCACATAAAGAATCACTCCACATGACCAAATATCTGATGTTGCACCATCATATCCATGATTACCAAGTACTTCAGGGGCAACATAAGCAGGAGTACCACAAGTTGTATGCAATAAACCATCTTGCCTTAAATGATCAGTAAAAGCACTAAGTCCGAAATCGGTTACCTTAAGATTGCCTTCTTCATCTAACAGCAAATTCTCAGGCTTTAAATCTCTGTGATA</gDNA_template>
            <first_frame> F  L  L  L  L  Y  S  K  S  Y  K  F  I   : D  E  F  K  R  H  T  S  E  M  K  S  Q  F  Q  I  *  T  I  T  R  T  K  T  K  Q  M  Q  L  L  *  *  H  E  T  Q  A  I  V  G  F  S  G  A  D  F  Q  T  M  S  L  S  A  G  L  S  S  L  L  Q  N  *  L  Y  S  N  V  S  P  Q  A  F  F  T  S  T  T  R  N  E  G  V  T  A  N  I  S  A  D  I  P  N  F  P  F  L  P  L  S  C  P  C  N  L  T  L  E  S  L  L  F  K  L  N  F  D  V  L  A  T  S  S  S  F  E  I  T  L  L  A  G  F  V  V  A  N  L  N  C  S  F  S  F  F  F  F  S  S  N  K  G  D  K  S  N  P  S  D  N  E  M  I  *  K  A  F  K  D  S  I  F  F  A  F  P  T  Q  S  S  S  P  T  *  E  N  S  S  S  T  L  L  L  K  V  L  G  T  V  F  L  N  Q  L  D  S  I  I  F  E  A  V  I  R  V  L  G  F  G  S  N  I  F  T  I  N  F  F  A  S  D  D  I  Q  G  G  H  L  K  S  P  L  *  I  F  L  Y  I  A  M  I  L  S  S  *  N  G  K  K  P  A  K  S  T  *  R  I  T  P  H  D  Q  I  S  D  V  A  P  S  Y  P  *  L  P  S  T  S  G  A  T  *  A  G  V  P  Q  V  V  C  N  K  P  S  C  L  K  *  S  V  K  A  L  S  P  K  S  V  T  L  R  L  P  S  S  S  N  S  K  F  S  G  F  K  S  L  *   </first_frame>
            <second_frame>  F  Y  Y  C  C  I  L  S  H  I  N  S  *  :  M  N  S  R  D  I  L  Q  R  *  S  L  N  F  K  S  K  Q  *  Q  E  Q  K  L  N  K  C  N  C  S  N  N  M  K  L  K  Q  L  L  D  S  Q  V  R  I  S  K  Q  C  P  *  V  L  A  *  A  L  C  C  R  I  D  Y  I  P  M  Y  H  H  K  L  S  S  P  P  Q  P  E  M  K  V  S  Q  Q  I  Y  Q  Q  I  F  P  T  S  L  S  S  H  S  L  A  P  A  I  *  H  *  N  H  S  F  S  S  *  I  S  T  F  *  L  L  P  R  A  S  K  S  H  Y  *  L  A  L  L  L  Q  I  S  T  V  P  S  P  S  S  S  F  P  Q  T  K  E  T  N  Q  T  P  P  T  M  K  *  Y  E  K  H  S  K  T  Q  S  F  S  P  S  L  H  N  L  R  L  P  H  E  K  T  L  P  P  P  Y  S  S  K  S  L  A  Q  S  S  *  T  N  *  T  P  *  S  L  K  Q  *  F  E  F  S  D  S  D  P  T  S  L  Q  S  T  S  L  H  Q  M  T  S  K  V  D  T  *  N  H  P  C  E  F  S  Y  T  *  P  *  Y  Y  H  L  E  M  V  K  N  Q  L  K  A  H  K  E  S  L  H  M  T  K  Y  L  M  L  H  H  H  I  H  D  Y  Q  V  L  Q  G  Q  H  K  Q  E  Y  H  K  L  Y  A  I  N  H  L  A  L  N  D  Q  *  K  H  *  V  R  N  R  L  P  *  D  C  L  L  H  L  T  A  N  S  Q  A  L  N  L  C  D  </second_frame>
            <third_frame>   F  I  I  V  V  F  *  V  I  *  I  H  R :   *  I  Q  E  T  Y  F  R  D  E  V  S  I  S  N  L  N  N  N  K  N  K  N  *  T  N  A  I  A  L  I  T  *  N  S  S  N  C  W  I  L  R  C  G  F  P  N  N  V  L  E  C  W  P  K  L  F  A  A  E  L  I  I  F  Q  C  I  T  T  S  F  L  H  L  H  N  Q  K  *  R  C  H  S  K  Y  I  S  R  Y  S  Q  L  P  F  P  P  T  L  L  P  L  Q  S  N  T  R  I  T  P  F  Q  A  E  F  R  R  F  S  Y  F  L  E  L  R  N  H  T  T  S  W  L  C  C  C  K  S  Q  L  F  L  L  L  L  L  L  F  L  K  Q  R  R  Q  I  K  P  L  R  Q  *  N  D  M  K  S  I  Q  R  L  N  L  F  R  L  P  Y  T  I  F  V  S  H  M  R  K  L  F  L  H  L  T  P  Q  S  P  W  H  S  L  L  E  P  I  R  L  H  N  L  *  S  S  N  S  S  S  R  I  R  I  Q  H  L  Y  N  Q  L  L  C  I  R  *  H  P  R  W  T  L  E  I  T  L  V  N  F  L  I  H  S  H  D  I  I  I  L  K  W  *  K  T  S  *  K  H  I  K  N  H  S  T  *  P  N  I  *  C  C  T  I  I  S  M  I  T  K  Y  F  R  G  N  I  S  R  S  T  T  S  C  M  Q  *  T  I  L  P  *  M  I  S  K  S  T  K  S  E  I  G  Y  L  K  I  A  F  F  I  *  Q  Q  I  L  R  L  *  I  S  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124561" stop="124259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYSNVSPQAFFTSTTRNEGVTANISADIPNFPFLPLSCPCNLTLESLLFKLNFDVLATSSSFEITLLAGFVVANLNCSFSFFFFSSNKGDKSNPSDNEMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124508" stop="124269"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCHSKYISRYSQLPFPPTLLPLQSNTRITPFQAEFRRFSYFLELRNHTTSWLCCCKSQLFLLLLLLFLKQRRQIKPLRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="123742" PGL_stop="131074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123742" e_stop="124896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="123742" e_stop="124896" e_length="1155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123742" stop="124672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124225" stop="124896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGATATGTTCTTGAAATTGAGACTGGAATCTCTTGAATCAC</gDNA_template>
            <first_frame> I  T  E  I  *  S  L  R  I  C  C  *  M  K  K  A  I  L  R  *  P  I  S  D  L  V  L  L  L  I  I  *  G  K  M  V  Y  C  I  Q  L  V  V  L  L  L  M  L  P  L  K  Y  L  V  I  M  D  M  M  V  Q  H  Q  I  F  G  H  V  E  *  F  F  M  C  F  *  L  V  F  Y  H  F  K  M  I  I  S  W  L  C  I  R  K  F  T  R  V  I  S  S  V  H  L  G  C  H  L  M  Q  R  S  *  L  *  R  C  W  I  R  I  R  E  L  E  L  L  L  Q  R  L  W  S  L  I  G  S  R  R  L  C  Q  G  L  *  G  V  R  W  R  K  S  F  L  M  W  E  T  K  I  V  *  G  R  R  K  R  L  S  L  *  M  L  F  I  S  F  H  C  R  R  G  L  I  C  L  L  C  L  R  K  R  R  R  R  R  R  N  S  *  D  L  Q  Q  Q  S  Q  L  V  V  *  F  R  S  S  R  K  *  L  K  R  R  N  S  A  *  K  G  V  I  L  V  L  D  C  R  G  K  R  V  G  G  K  G  S  W  E  Y  L  L  I  Y  L  L  *  H  L  H  F  W  L  W  R  *  R  K  L  V  V  I  H  W  N  I  I  N  S  A  A  K  S  L  G  Q  H  S  R  T  L  F  G  N  P  H  L  R  I  Q  Q  L  L  E  F  H  V  I  R  A  I  A  F  V  *  F  L  F  L  L  L  F  R  F  E  I  E  T  S  S  L  K  Y  V  S  *  I  H  L  L  D  *  I  C  L  V  F  V  L  I  L  V  V  *  *  C  V  L  E  I  E  T  V  S  L  E  S  F  S  S  I  L  V  I  Q  I  C  S  *  N  *  D  W  N  L  L  N  H </first_frame>
            <second_frame>  S  Q  R  F  K  A  *  E  F  A  V  R  *  R  R  Q  S  *  G  N  R  F  R  T  *  C  F  Y  *  S  F  K  A  R  W  F  I  A  Y  N  L  W  Y  S  C  L  C  C  P  *  S  T  W  *  S  W  I  *  W  C  N  I  R  Y  L  V  M  W  S  D  S  L  C  A  F  S  W  F  F  T  I  S  R  *  *  Y  H  G  Y  V  *  E  N  S  Q  G  *  F  Q  V  S  T  L  D  V  I  *  C  K  E  V  D  C  K  D  V  G  S  E  S  E  N  S  N  Y  C  F  K  D  Y  G  V  *  L  V  Q  E  D  C  A  K  D  F  E  E  *  G  G  G  R  V  F  S  C  G  R  R  R  L  C  R  E  G  E  K  D  *  V  F  E  C  F  S  Y  H  F  I  V  G  G  V  *  F  V  S  F  V  *  G  K  E  E  E  G  E  G  T  V  E  I  C  N  N  K  A  S  *  *  C  D  F  E  A  R  G  S  S  *  N  V  E  I  Q  L  E  K  E  *  F  *  C  *  I  A  G  A  R  E  W  E  E  R  E  V  G  N  I  C  *  Y  I  C  C  D  T  F  I  S  G  C  G  G  E  E  S  L  W  *  Y  I  G  I  *  S  I  L  Q  Q  R  A  *  A  S  T  Q  G  H  C  L  E  I  R  T  *  E  S  N  N  C  L  S  F  M  L  L  E  Q  L  H  L  F  S  F  C  S  C  Y  C  L  D  L  K  L  R  L  H  L  *  S  M  S  L  E  F  I  C  *  I  E  F  V  *  F  L  F  L  F  L  L  F  S  D  V  F  L  K  L  R  R  C  L  L  N  R  L  V  L  F  L  L  F  R  Y  V  L  E  I  E  T  G  I  S  *  I   </second_frame>
            <third_frame>   H  R  D  L  K  P  E  N  L  L  L  D  E  E  G  N  L  K  V  T  D  F  G  L  S  A  F  T  D  H  L  R  Q  D  G  L  L  H  T  T  C  G  T  P  A  Y  V  A  P  E  V  L  G  N  H  G  Y  D  G  A  T  S  D  I  W  S  C  G  V  I  L  Y  V  L  L  A  G  F  L  P  F  Q  D  D  N  I  M  A  M  Y  K  K  I  H  K  G  D  F  K  C  P  P  W  M  S  S  D  A  K  K  L  I  V  K  M  L  D  P  N  P  R  T  R  I  T  A  S  K  I  M  E  S  N  W  F  K  K  T  V  P  R  T  L  R  S  K  V  E  E  E  F  S  H  V  G  D  E  D  C  V  G  K  A  K  K  I  E  S  L  N  A  F  H  I  I  S  L  S  E  G  F  D  L  S  P  L  F  E  E  K  K  K  K  E  K  E  Q  L  R  F  A  T  T  K  P  A  S  S  V  I  S  K  L  E  E  V  A  K  T  S  K  F  S  L  K  R  S  D  S  S  V  R  L  Q  G  Q  E  S  G  R  K  G  K  L  G  I  S  A  D  I  F  A  V  T  P  S  F  L  V  V  E  V  K  K  A  C  G  D  T  L  E  Y  N  Q  F  C  S  K  E  L  R  P  A  L  K  D  I  V  W  K  S  A  P  E  N  P  T  I  A  *  V  S  C  Y  *  S  N  C  I  C  L  V  F  V  L  V  I  V  *  I  *  N  *  D  F  I  S  E  V  C  L  L  N  S  S  V  R  L  N  L  F  S  F  C  S  Y  S  C  C  L  V  M  C  S  *  N  *  D  G  V  S  *  I  V  *  F  Y  S  C  Y  S  D  M  F  L  K  L  R  L  E  S  L  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123744" stop="124643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRDLKPENLLLDEEGNLKVTDFGLSAFTDHLRQDGLLHTTCGTPAYVAPEVLGNHGYDGATSDIWSCGVILYVLLAGFLPFQDDNIMAMYKKIHKGDFKCPPWMSSDAKKLIVKMLDPNPRTRITASKIMESNWFKKTVPRTLRSKVEEEFSHVGDEDCVGKAKKIESLNAFHIISLSEGFDLSPLFEEKKKKEKEQLRFATTKPASSVISKLEEVAKTSKFSLKRSDSSVRLQGQESGRKGKLGISADIFAVTPSFLVVEVKKACGDTLEYNQFCSKELRPALKDIVWKSAPENPTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123742" e_stop="124858"/>
            <exon e_start="131049" e_stop="131074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="123742" e_stop="124858" e_length="1117"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124859" i_stop="131048" i_length="6190"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="131049" e_stop="131074" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123742" stop="124672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124448" stop="124858"/>
              <exon start="131049" stop="131074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACAGAGATTTAAAGCCTGAGAATTTGCTGTTAGATGAAGAAGGCAATCTTAAGGTAACCGATTTCGGACTTAGTGCTTTTACTGATCATTTAAGGCAAGATGGTTTATTGCATACAACTTGTGGTACTCCTGCTTATGTTGCCCCTGAAGTACTTGGTAATCATGGATATGATGGTGCAACATCAGATATTTGGTCATGTGGAGTGATTCTTTATGTGCTTTTAGCTGGTTTTTTACCATTTCAAGATGATAATATCATGGCTATGTATAAGAAAATTCACAAGGGTGATTTCAAGTGTCCACCTTGGATGTCATCTGATGCAAAGAAGTTGATTGTAAAGATGTTGGATCCGAATCCGAGAACTCGAATTACTGCTTCAAAGATTATGGAGTCTAATTGGTTCAAGAAGACTGTGCCAAGGACTTTGAGGAGTAAGGTGGAGGAAGAGTTTTCTCATGTGGGAGACGAAGATTGTGTAGGGAAGGCGAAAAAGATTGAGTCTTTGAATGCTTTTCATATCATTTCATTGTCGGAGGGGTTTGATTTGTCTCCTTTGTTTGAGGAAAAGAAGAAGAAGGAGAAGGAACAGTTGAGATTTGCAACAACAAAGCCAGCTAGTAGTGTGATTTCGAAGCTCGAGGAAGTAGCTAAAACGTCGAAATTCAGCTTGAAAAGGAGTGATTCTAGTGTTAGATTGCAGGGGCAAGAGAGTGGGAGGAAAGGGAAGTTGGGAATATCTGCTGATATATTTGCTGTGACACCTTCATTTCTGGTTGTGGAGGTGAAGAAAGCTTGTGGTGATACATTGGAATATAATCAATTCTGCAGCAAAGAGCTTAGGCCAGCACTCAAGGACATTGTTTGGAAATCCGCACCTGAGAATCCAACAATTGCTTGAGTTTCATGTTATTAGAGCAATTGCATTTGTTTAGTTTTTGTTCTTGTTATTGTTTAGATTTGAAATTGAGACTTCATCTCTGAAGTATGTCTCTTGAATTCATCTGTTAGATTGAATTTGTTTAGTTTTTGTTCTTATTCTTGTTGTTTAGTGATGTGTTCTTGAAATTGAGACGGTGTCTCTTGAATCGTTTAGTTCTATTCTTGTTATTCAGA : AAAAAAAAGTAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> I  T  E  I  *  S  L  R  I  C  C  *  M  K  K  A  I  L  R  *  P  I  S  D  L  V  L  L  L  I  I  *  G  K  M  V  Y  C  I  Q  L  V  V  L  L  L  M  L  P  L  K  Y  L  V  I  M  D  M  M  V  Q  H  Q  I  F  G  H  V  E  *  F  F  M  C  F  *  L  V  F  Y  H  F  K  M  I  I  S  W  L  C  I  R  K  F  T  R  V  I  S  S  V  H  L  G  C  H  L  M  Q  R  S  *  L  *  R  C  W  I  R  I  R  E  L  E  L  L  L  Q  R  L  W  S  L  I  G  S  R  R  L  C  Q  G  L  *  G  V  R  W  R  K  S  F  L  M  W  E  T  K  I  V  *  G  R  R  K  R  L  S  L  *  M  L  F  I  S  F  H  C  R  R  G  L  I  C  L  L  C  L  R  K  R  R  R  R  R  R  N  S  *  D  L  Q  Q  Q  S  Q  L  V  V  *  F  R  S  S  R  K  *  L  K  R  R  N  S  A  *  K  G  V  I  L  V  L  D  C  R  G  K  R  V  G  G  K  G  S  W  E  Y  L  L  I  Y  L  L  *  H  L  H  F  W  L  W  R  *  R  K  L  V  V  I  H  W  N  I  I  N  S  A  A  K  S  L  G  Q  H  S  R  T  L  F  G  N  P  H  L  R  I  Q  Q  L  L  E  F  H  V  I  R  A  I  A  F  V  *  F  L  F  L  L  L  F  R  F  E  I  E  T  S  S  L  K  Y  V  S  *  I  H  L  L  D  *  I  C  L  V  F  V  L  I  L  V  V  *  *  C  V  L  E  I  E  T  V  S  L  E  S  F  S  S  I  L  V  I  Q   : K  K  K  V  K  K  K  K  K </first_frame>
            <second_frame>  S  Q  R  F  K  A  *  E  F  A  V  R  *  R  R  Q  S  *  G  N  R  F  R  T  *  C  F  Y  *  S  F  K  A  R  W  F  I  A  Y  N  L  W  Y  S  C  L  C  C  P  *  S  T  W  *  S  W  I  *  W  C  N  I  R  Y  L  V  M  W  S  D  S  L  C  A  F  S  W  F  F  T  I  S  R  *  *  Y  H  G  Y  V  *  E  N  S  Q  G  *  F  Q  V  S  T  L  D  V  I  *  C  K  E  V  D  C  K  D  V  G  S  E  S  E  N  S  N  Y  C  F  K  D  Y  G  V  *  L  V  Q  E  D  C  A  K  D  F  E  E  *  G  G  G  R  V  F  S  C  G  R  R  R  L  C  R  E  G  E  K  D  *  V  F  E  C  F  S  Y  H  F  I  V  G  G  V  *  F  V  S  F  V  *  G  K  E  E  E  G  E  G  T  V  E  I  C  N  N  K  A  S  *  *  C  D  F  E  A  R  G  S  S  *  N  V  E  I  Q  L  E  K  E  *  F  *  C  *  I  A  G  A  R  E  W  E  E  R  E  V  G  N  I  C  *  Y  I  C  C  D  T  F  I  S  G  C  G  G  E  E  S  L  W  *  Y  I  G  I  *  S  I  L  Q  Q  R  A  *  A  S  T  Q  G  H  C  L  E  I  R  T  *  E  S  N  N  C  L  S  F  M  L  L  E  Q  L  H  L  F  S  F  C  S  C  Y  C  L  D  L  K  L  R  L  H  L  *  S  M  S  L  E  F  I  C  *  I  E  F  V  *  F  L  F  L  F  L  L  F  S  D  V  F  L  K  L  R  R  C  L  L  N  R  L  V  L  F  L  L  F  R  :  K  K  K  *  K  K  K  K   </second_frame>
            <third_frame>   H  R  D  L  K  P  E  N  L  L  L  D  E  E  G  N  L  K  V  T  D  F  G  L  S  A  F  T  D  H  L  R  Q  D  G  L  L  H  T  T  C  G  T  P  A  Y  V  A  P  E  V  L  G  N  H  G  Y  D  G  A  T  S  D  I  W  S  C  G  V  I  L  Y  V  L  L  A  G  F  L  P  F  Q  D  D  N  I  M  A  M  Y  K  K  I  H  K  G  D  F  K  C  P  P  W  M  S  S  D  A  K  K  L  I  V  K  M  L  D  P  N  P  R  T  R  I  T  A  S  K  I  M  E  S  N  W  F  K  K  T  V  P  R  T  L  R  S  K  V  E  E  E  F  S  H  V  G  D  E  D  C  V  G  K  A  K  K  I  E  S  L  N  A  F  H  I  I  S  L  S  E  G  F  D  L  S  P  L  F  E  E  K  K  K  K  E  K  E  Q  L  R  F  A  T  T  K  P  A  S  S  V  I  S  K  L  E  E  V  A  K  T  S  K  F  S  L  K  R  S  D  S  S  V  R  L  Q  G  Q  E  S  G  R  K  G  K  L  G  I  S  A  D  I  F  A  V  T  P  S  F  L  V  V  E  V  K  K  A  C  G  D  T  L  E  Y  N  Q  F  C  S  K  E  L  R  P  A  L  K  D  I  V  W  K  S  A  P  E  N  P  T  I  A  *  V  S  C  Y  *  S  N  C  I  C  L  V  F  V  L  V  I  V  *  I  *  N  *  D  F  I  S  E  V  C  L  L  N  S  S  V  R  L  N  L  F  S  F  C  S  Y  S  C  C  L  V  M  C  S  *  N  *  D  G  V  S  *  I  V  *  F  Y  S  C  Y  S  E :   K  K  S  K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123744" stop="124643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRDLKPENLLLDEEGNLKVTDFGLSAFTDHLRQDGLLHTTCGTPAYVAPEVLGNHGYDGATSDIWSCGVILYVLLAGFLPFQDDNIMAMYKKIHKGDFKCPPWMSSDAKKLIVKMLDPNPRTRITASKIMESNWFKKTVPRTLRSKVEEEFSHVGDEDCVGKAKKIESLNAFHIISLSEGFDLSPLFEEKKKKEKEQLRFATTKPASSVISKLEEVAKTSKFSLKRSDSSVRLQGQESGRKGKLGISADIFAVTPSFLVVEVKKACGDTLEYNQFCSKELRPALKDIVWKSAPENPTIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="133603" PGL_stop="137072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133603" e_stop="134050"/>
            <exon e_start="134699" e_stop="134801"/>
            <exon e_start="134916" e_stop="134968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133603" e_stop="134050" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.862">
            <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134699" e_stop="134801" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134916" e_stop="134968" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133603" stop="134050"/>
              <exon start="134699" stop="134801"/>
              <exon start="134916" stop="134968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTATTGGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAGGTAAAATGCTTGCATTTCTTTTTATGTTTTGCTTCATTCAATTTTGCTCGTATTCTCTATAAATGTTGTTGTACACGTGTTGCATCATCCTTAAATGCGCTACTTGACCTACGTTTCATTTTGACTCTTTGTTTTCAAAGCTTGATTCTGAATTCCTCTTTTGCATCTTGTTGCATTTTCAGATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG : TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG : CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTC</gDNA_template>
            <first_frame> R  I  G  G  R  N  R  R  G  K  *  *  E  K  C  *  S  *  R  N  *  S  A  R  T  E  *  A  *  K  D  C  D  *  R  E  E  I  S  V  Q  *  *  K  A  N  A  N  Y  F  N  *  Y  E  T  V  T  S  Y  F  R  Q  C  *  Y  S  S  K  C  N  K  N  Q  I  R  *  N  A  C  I  S  F  Y  V  L  L  H  S  I  L  L  V  F  S  I  N  V  V  V  H  V  L  H  H  P  *  M  R  Y  L  T  Y  V  S  F  *  L  F  V  F  K  A  *  F  *  I  P  L  L  H  L  V  A  F  S  D  E  F  Q  S  K  Q  H  S  K  L  Q  S  L   : V  D  L  V  M  W  R  N  V  S  K  S  A  L  V  F  G  I  G  T  F  V  I  I  S  S  S  Y  T  Q  D  L  N  I  S :   F  I  S  A  L  A  Y  L  G  L  I  Y  L  A  A  I  F  </first_frame>
            <second_frame>  V  L  E  E  E  I  D  E  G  N  D  K  R  S  V  E  V  K  E  I  R  V  Q  E  Q  N  K  L  K  K  I  V  I  E  E  K  R  F  Q  Y  N  N  K  R  Q  M  P  I  T  S  I  N  M  K  Q  S  P  P  T  L  G  N  A  N  I  H  Q  S  A  T  R  T  K  S  G  K  M  L  A  F  L  F  M  F  C  F  I  Q  F  C  S  Y  S  L  *  M  L  L  Y  T  C  C  I  I  L  K  C  A  T  *  P  T  F  H  F  D  S  L  F  S  K  L  D  S  E  F  L  F  C  I  L  L  H  F  Q  M  N  S  S  L  N  N  I  A  N  Y  K  A  W  :  L  I  *  *  C  G  E  M  Y  Q  N  Q  H  *  S  L  E  L  E  R  L  *  S  F  H  L  H  I  L  K  I  S  I  S   : A  L  F  L  R  S  P  T  W  V  *  S  I  L  L  Q  S  F </second_frame>
            <third_frame>   Y  W  R  K  K  S  T  R  E  M  I  R  E  V  L  K  L  K  K  L  E  C  K  N  R  I  S  L  K  R  L  *  L  K  R  R  D  F  S  T  I  I  K  G  K  C  Q  L  L  Q  L  I  *  N  S  H  L  L  L  *  A  M  L  I  F  I  K  V  Q  Q  E  P  N  Q  V  K  C  L  H  F  F  L  C  F  A  S  F  N  F  A  R  I  L  Y  K  C  C  C  T  R  V  A  S  S  L  N  A  L  L  D  L  R  F  I  L  T  L  C  F  Q  S  L  I  L  N  S  S  F  A  S  C  C  I  F  R  *  I  P  V  *  T  T  *  Q  T  T  K  L  G :   *  F  S  D  V  E  K  C  I  K  I  S  I  S  L  W  N  W  N  V  C  N  H  F  I  F  I  Y  S  R  S  Q  Y  Q  :  L  Y  F  C  A  R  L  L  G  S  D  L  S  C  C  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133604" stop="133888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLEEEIDEGNDKRSVEVKEIRVQEQNKLKKIVIEEKRFQYNNKRQMPITSINMKQSPPTLGNANIHQSATRTKSGKMLAFLFMFCFIQFCSYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133978" stop="134050"/>
                    <exon start="134699" stop="134801"/>
                    <exon start="134916" stop="134967"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPLLHLVAFSDEFQSKQHSKLQSLVDLVMWRNVSKSALVFGIGTFVIISSSYTQDLNISFISALAYLGLIYLAAIF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133785" stop="134012"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMLIFIKVQQEPNQVKCLHFFLCFASFNFARILYKCCCTRVASSLNALLDLRFILTLCFQSLILNSSFASCCIFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133609" e_stop="133826"/>
            <exon e_start="134009" e_stop="134050"/>
            <exon e_start="134699" e_stop="134801"/>
            <exon e_start="134916" e_stop="134990"/>
            <exon e_start="135425" e_stop="135572"/>
            <exon e_start="136116" e_stop="136185"/>
            <exon e_start="136332" e_stop="136397"/>
            <exon e_start="136997" e_stop="137072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133609" e_stop="133826" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.974">
            <gDNA_intron_boundary i_start="133827" i_stop="134008" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134009" e_stop="134050" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.862">
            <gDNA_intron_boundary i_start="134051" i_stop="134698" i_length="648"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134699" e_stop="134801" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="134802" i_stop="134915" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134916" e_stop="134990" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134991" i_stop="135424" i_length="434"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135425" e_stop="135572" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="135573" i_stop="136115" i_length="543"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="136116" e_stop="136185" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.446" acc_prob="0.971">
            <gDNA_intron_boundary i_start="136186" i_stop="136331" i_length="146"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="136332" e_stop="136397" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.940">
            <gDNA_intron_boundary i_start="136398" i_stop="136996" i_length="599"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="136997" e_stop="137072" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133609" stop="133826"/>
              <exon start="134009" stop="134050"/>
              <exon start="134699" stop="134801"/>
              <exon start="134916" stop="134990"/>
              <exon start="135425" stop="135572"/>
              <exon start="136116" stop="136185"/>
              <exon start="136332" stop="136397"/>
              <exon start="136997" stop="137072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGGAAGAAATCGACGAGGGAAATGATAAGAGAAGTGTTGAAGTTAAAGAAATTAGAGTGCAAGAACAGAATAAGCTTAAAAAGATTGTGATTGAAGAGAAGAGATTTCAGTACAATAATAAAAGGCAAATGCCAATTACTTCAATTAATATGAAACAGTCACCTCCTACTTTAGGCAATGCTAATATTCATCAAAGTGCAACAAGAACCAAATCAG : ATGAATTCCAGTCTAAACAACATAGCAAACTACAAAGCTTGG : TTGATTTAGTGATGTGGAGAAATGTATCAAAATCAGCATTAGTCTTTGGAATTGGAACGTTTGTAATCATTTCATCTTCATATACTCAAGATCTCAATATCAG : CTTTATTTCTGCGCTCGCCTACTTGGGTCTGATCTATCTTGCTGCAATCTTTCTCTTTAGATCCCTCATTCACAG : GAGAGCCGTTGATGTTGGTGAATCAAGCGAATGTGTAGTAGAAGAAGAAGAAGTAATGTGGATACTGAAATTGATACTTCCTTTAATAAATGAGTTTCTTTTGAAAATCAGAGCCCTTTTTTCTGGGGATCCTTCGACTACAATGAAG : ATGGCGGTTCTGCTGTTTCTTTTGGCTAAGTTCGGCAACTATATAACTATTTGGAAACTGTATAAATTGG : GTTTTTTTGGAGTTTTCGTCATACCAAAAGTTTGCTCTTCTTATTCGACACAGTTAACTTCTCACG : GTACATTTTTTATAAGATACATTAGAGATGCTTGGGAATCATGTACTCACAAAAAGGCTATTGGATTTGCAATCTT</gDNA_template>
            <first_frame> G  G  R  N  R  R  G  K  *  *  E  K  C  *  S  *  R  N  *  S  A  R  T  E  *  A  *  K  D  C  D  *  R  E  E  I  S  V  Q  *  *  K  A  N  A  N  Y  F  N  *  Y  E  T  V  T  S  Y  F  R  Q  C  *  Y  S  S  K  C  N  K  N  Q  I  R :   *  I  P  V  *  T  T  *  Q  T  T  K  L  G :   *  F  S  D  V  E  K  C  I  K  I  S  I  S  L  W  N  W  N  V  C  N  H  F  I  F  I  Y  S  R  S  Q  Y  Q  :  L  Y  F  C  A  R  L  L  G  S  D  L  S  C  C  N  L  S  L  *  I  P  H  S  Q  :  E  S  R  *  C  W  *  I  K  R  M  C  S  R  R  R  R  S  N  V  D  T  E  I  D  T  S  F  N  K  *  V  S  F  E  N  Q  S  P  F  F  W  G  S  F  D  Y  N  E   : D  G  G  S  A  V  S  F  G  *  V  R  Q  L  Y  N  Y  L  E  T  V  *  I  G :   F  F  W  S  F  R  H  T  K  S  L  L  F  L  F  D  T  V  N  F  S  R :   Y  I  F  Y  K  I  H  *  R  C  L  G  I  M  Y  S  Q  K  G  Y  W  I  C  N  L </first_frame>
            <second_frame>  E  E  E  I  D  E  G  N  D  K  R  S  V  E  V  K  E  I  R  V  Q  E  Q  N  K  L  K  K  I  V  I  E  E  K  R  F  Q  Y  N  N  K  R  Q  M  P  I  T  S  I  N  M  K  Q  S  P  P  T  L  G  N  A  N  I  H  Q  S  A  T  R  T  K  S   : D  E  F  Q  S  K  Q  H  S  K  L  Q  S  L   : V  D  L  V  M  W  R  N  V  S  K  S  A  L  V  F  G  I  G  T  F  V  I  I  S  S  S  Y  T  Q  D  L  N  I  S :   F  I  S  A  L  A  Y  L  G  L  I  Y  L  A  A  I  F  L  F  R  S  L  I  H  R :   R  A  V  D  V  G  E  S  S  E  C  V  V  E  E  E  E  V  M  W  I  L  K  L  I  L  P  L  I  N  E  F  L  L  K  I  R  A  L  F  S  G  D  P  S  T  T  M  K  :  M  A  V  L  L  F  L  L  A  K  F  G  N  Y  I  T  I  W  K  L  Y  K  L   : G  F  F  G  V  F  V  I  P  K  V  C  S  S  Y  S  T  Q  L  T  S  H   : G  T  F  F  I  R  Y  I  R  D  A  W  E  S  C  T  H  K  K  A  I  G  F  A  I   </second_frame>
            <third_frame>   R  K  K  S  T  R  E  M  I  R  E  V  L  K  L  K  K  L  E  C  K  N  R  I  S  L  K  R  L  *  L  K  R  R  D  F  S  T  I  I  K  G  K  C  Q  L  L  Q  L  I  *  N  S  H  L  L  L  *  A  M  L  I  F  I  K  V  Q  Q  E  P  N  Q  :  M  N  S  S  L  N  N  I  A  N  Y  K  A  W  :  L  I  *  *  C  G  E  M  Y  Q  N  Q  H  *  S  L  E  L  E  R  L  *  S  F  H  L  H  I  L  K  I  S  I  S   : A  L  F  L  R  S  P  T  W  V  *  S  I  L  L  Q  S  F  S  L  D  P  S  F  T   : G  E  P  L  M  L  V  N  Q  A  N  V  *  *  K  K  K  K  *  C  G  Y  *  N  *  Y  F  L  *  *  M  S  F  F  *  K  S  E  P  F  F  L  G  I  L  R  L  Q  *  R :   W  R  F  C  C  F  F  W  L  S  S  A  T  I  *  L  F  G  N  C  I  N  W  :  V  F  L  E  F  S  S  Y  Q  K  F  A  L  L  I  R  H  S  *  L  L  T  :  V  H  F  L  *  D  T  L  E  M  L  G  N  H  V  L  T  K  R  L  L  D  L  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0180O10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133610" stop="133826"/>
                    <exon start="134009" stop="134050"/>
                    <exon start="134699" stop="134801"/>
                    <exon start="134916" stop="134990"/>
                    <exon start="135425" stop="135572"/>
                    <exon start="136116" stop="136185"/>
                    <exon start="136332" stop="136397"/>
                    <exon start="136997" stop="137070"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEEIDEGNDKRSVEVKEIRVQEQNKLKKIVIEEKRFQYNNKRQMPITSINMKQSPPTLGNANIHQSATRTKSDEFQSKQHSKLQSLVDLVMWRNVSKSALVFGIGTFVIISSSYTQDLNISFISALAYLGLIYLAAIFLFRSLIHRRAVDVGESSECVVEEEEVMWILKLILPLINEFLLKIRALFSGDPSTTMKMAVLLFLLAKFGNYITIWKLYKLGFFGVFVIPKVCSSYSTQLTSHGTFFIRYIRDAWESCTHKKAIGFAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 591 chains have been computed
$ 
$ memory statistics:
$ 14352240 bytes spliced alignments in total
$ 388 spliced alignments have been stored
$ 36990 bytes was the average size of a spliced alignment
$ 53760 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 2986 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 692 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:39:12
-->
