<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:40:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0165F06-TSQRQ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0165F06-TSQRQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0165F06-TSQRQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7071" ref_strand="+" ref_description="SGN-M7071 C2_At1g76450 [cosii_markers]">
      <seq>gaaggtgatggagtaaggtcactcttagctttctatcctccagaagcttctaactcaaatgtcagcatagtaatcacaagccttggtgctgatttcaccaagttggaatctttcgggaaagttgatgcttttgctgagaatctggtcagcggatttgatagaagctggcaaaggcctccgggagtgaaagcaaaactcatagatagcaaagcttctaaagggttgtattacatcgagtacactctccaaaatcccggtgaaagtctcagacatctattttcagtgcttgggatagcaaacaatgggatttacaacagactgtatactctcactggacagtttgtagacgaggaggcagagaaatatggtgccaaaatacagaaggctgtttcttctttcagattaatatgatgacatgaacagagagcgcgatatcgcaaattttggcttgagcttctggtttttctcgtttggtgaatggtaaacataattgagagcgcgatatcacagattcaagttctggttaaggtatattatgacgactcgagaaaaaactggagttgtaagtatgaactagcaacttgatcaatgttagagttagtatttgcataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0165F06-TSQRQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C12HBa0165F06.1" temp_strand="-" temp_description="C12HBa0165F06.1  AC216399.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0165F06 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79559" stop="76864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79259" g_stop="79199" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79198" i_stop="79112" i_length="87">
            <donor d_prob="0.251" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79111" g_stop="79029" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="144" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79028" i_stop="78926" i_length="103">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78925" g_stop="78850" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="220" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78849" i_stop="78483" i_length="367">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78482" g_stop="78364" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="339" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78363" i_stop="78239" i_length="125">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78238" g_stop="78194" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="384" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78193" i_stop="77393" i_length="801">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77392" g_stop="77167" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="610" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77166" i_stop="77015" i_length="152">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77014" g_stop="77004" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="621" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0165F06.1" gen_strand="-" ref_id="SGN-M7071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0165F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79259" e_stop="79199"/>
          <exon e_start="79111" e_stop="79029"/>
          <exon e_start="78925" e_stop="78850"/>
          <exon e_start="78482" e_stop="78364"/>
          <exon e_start="78238" e_stop="78194"/>
          <exon e_start="77392" e_stop="77167"/>
          <exon e_start="77014" e_stop="77004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATGGTATTAGTTGGACATTAGTGATGGATCGATTCATTTGAGCTTTATTACATTGTTGTGTATATTAACTCGATCATCATGTTGTTTCAGTCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTGGTGCGTCTTAATCCATCCCTATTATGAAAGAAACTCTCCGTTCCTTCTTCTTTTTTTTATTTTAATTCACGTTCTTACTTCGGCCCTCAATGATTTTTAACAGGTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAGGTATATAAGACTATCGAAAGTCACTTGCTAAACTTGCCTCGATGCAATGGTTATCTGAGGTTTACATATAAATCGAACAGTGTGTTTATAAAGCCATGAAATGAATGCATACTATTGTACCTACACAATTAGAAAGTGCTTTTATGAAATGATTTTCGACGAGTCAAGAAGAAAAGCTCTCATTCCTAGAATTTAGAACACGTAAATTTAAAATCCTGCATCTGTCTCTGTCATTAAGAAACTAAGTGATTTTATCTCACTGAAGTAGTTGTAACTTTGCTTCAACGCTTAGGAGTTTATACTTGCACATGATGTGAGGACGTTTAATTTTTTAAGCCGTTTAATAATTGTCACTCTTATTAATCAGGGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAGGTCAGCTAAACGAAGCAAAAATACATGCATTAAACTTACTTGGCTTTTCAATTTTCCATTACGAGAGGATGATGATGAAGAGACGATAGACTGTAAAATTGATTAAGATTTGATTTATCTCGCAGTTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAGGTAAGTTTAAGTTCATTTTCTTCTTGTTTTGTGTGTGCTAGTTTTTTGAGTGAAGATATGCATCACAAAAATGTCTATAGTATCTCAAAAGAAAGCCTCCCTCGTGGATTAGGAAGAACTCTCTTTTTCGTTATAAGGAATTGTAAACTTCGACAGCTTTGTAAAAAGATATAGAAGAAAAAAGAAATATGTGCTTATACATATGAGAAACGGGATTGAAGGCGAAAGAGGTGGATTTGCCCCTCTTCCCCTGCACGCGAGATATATATCATATATGAGGCCTAATCCAGTTCTGATTCTTCTTTTCTTTCTAAGCTTGTGAGTAATTTTGAATCCTGGATTCCATAATCCTTTCCCGAACCAAACATGAATCTATGCATTCATTTGTCTCTCACGAGACAGTGTCATCAAGGACACACCTCAAGCTAGAAGAAGCTTTCTGTGATTATATTATACAGTTTCTGTGATATGTTGAAGTAAGTTGCATCACATTTCATATATATTAACTCTGTATATGTATAATTAGAAGTTGTCTTCAGCAGAAATTGTCAAGTTTTTGCAAAATGTTGTGTAGCTTGACGGATATATTTTCACAGTTTACCTATACATACACGTCAATCTCCTTTCTAAGCCTGTTTAGTATCCCGGATTGAGTTAGATCACCATGTTAAGTGATGAAAGACGGAAAAACCTGAGTGCACTGATCTCAACTGTTGAACGTTTTCACGATTTCTTAAGAAAATGTTCATTGTCTATTCCACATGATTGGAATCAATGTCTGAAGTTTCTTGCAATGTGCAGGCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCATATATCGTTATATACCAAAACTGTATCGATTTTTTGATAAAAATATGACCTTAGTGCAAATAATTTGATGCTCAAGTTTTGATTATATATTTGTACTCTACTCAGGACCTTAAATCGGTTATTTGAGCTTTATTGTCATCTTCCTTTGTGAAGCAATAAATACA</genome_strand>
        <mrna_strand>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATG.......................................................................................TCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTG.......................................................................................................GTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAG...............................................................................................................................................................................................................................................................................................................................................................................GGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAG.............................................................................................................................TTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCAT........................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="79259" PGL_stop="77004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79259" e_stop="79199"/>
            <exon e_start="79111" e_stop="79029"/>
            <exon e_start="78925" e_stop="78850"/>
            <exon e_start="78482" e_stop="78364"/>
            <exon e_start="78238" e_stop="78194"/>
            <exon e_start="77392" e_stop="77167"/>
            <exon e_start="77014" e_stop="77004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.251" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.815" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79259" e_stop="79199" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.251" acc_prob="0.932">
            <gDNA_intron_boundary i_start="79198" i_stop="79112" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79111" e_stop="79029" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.862" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79028" i_stop="78926" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78925" e_stop="78850" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.926">
            <gDNA_intron_boundary i_start="78849" i_stop="78483" i_length="367"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78482" e_stop="78364" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.897">
            <gDNA_intron_boundary i_start="78363" i_stop="78239" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78238" e_stop="78194" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78193" i_stop="77393" i_length="801"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77392" e_stop="77167" e_length="226"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.815">
            <gDNA_intron_boundary i_start="77166" i_stop="77015" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="0.636">
            <gDNA_exon_boundary e_start="77014" e_stop="77004" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79259" stop="79199"/>
              <exon start="79111" stop="79029"/>
              <exon start="78925" stop="78850"/>
              <exon start="78482" stop="78364"/>
              <exon start="78238" stop="78194"/>
              <exon start="77392" stop="77167"/>
              <exon start="77014" stop="77004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGTGATGGAGTAAGGTCACTCTTAGCTTTCTATCCTCCAGAAGCTTCTAACTCAAATG : TCAGCATAGTAATCACAAGCCTTGGTGCTGATTTCACCAAGTTGGAATCTTTCGGGAAAGTTGATGCTTTTGCTGAGAATCTG : GTCAGCGGATTTGATAGAAGCTGGCAAAGGCCTCCGGGAGTGAAAGCAAAACTCATAGATAGCAAAGCTTCTAAAG : GGTTGTATTACATCGAGTACACTCTCCAAAATCCCGGTGAAAGTCTCAGACATCTATTTTCAGTGCTTGGGATAGCAAACAATGGGATTTACAACAGACTGTATACTCTCACTGGACAG : TTTGTAGACGAGGAGGCAGAGAAATATGGTGCCAAAATACAGAAG : GCTGTTTCTTCTTTCAGATTAATATGATGACATGAACAGAGAGCGCGATATCGCAAATTTTGGCTTGAGCTTCTGGTTTTTCTCGTTTGGTGAATGGTAAACATAATTGAGAGCGCGATATCACAGATTCAAGTTCTGGTTAAGGTATATTATGACGACTCGAGAAAAAACTGGAGTTGTAAGTATGAACTAGCAACTTGATCAATGTTAGAGTTAGTATTTGCAT : CAATAAATACA</gDNA_template>
            <first_frame> E  G  D  G  V  R  S  L  L  A  F  Y  P  P  E  A  S  N  S  N   : V  S  I  V  I  T  S  L  G  A  D  F  T  K  L  E  S  F  G  K  V  D  A  F  A  E  N  L  :  V  S  G  F  D  R  S  W  Q  R  P  P  G  V  K  A  K  L  I  D  S  K  A  S  K   : G  L  Y  Y  I  E  Y  T  L  Q  N  P  G  E  S  L  R  H  L  F  S  V  L  G  I  A  N  N  G  I  Y  N  R  L  Y  T  L  T  G  Q  :  F  V  D  E  E  A  E  K  Y  G  A  K  I  Q  K  :  A  V  S  S  F  R  L  I  *  *  H  E  Q  R  A  R  Y  R  K  F  W  L  E  L  L  V  F  L  V  W  *  M  V  N  I  I  E  S  A  I  S  Q  I  Q  V  L  V  K  V  Y  Y  D  D  S  R  K  N  W  S  C  K  Y  E  L  A  T  *  S  M  L  E  L  V  F  A   : S  I  N  T </first_frame>
            <second_frame>  K  V  M  E  *  G  H  S  *  L  S  I  L  Q  K  L  L  T  Q  M  :  S  A  *  *  S  Q  A  L  V  L  I  S  P  S  W  N  L  S  G  K  L  M  L  L  L  R  I  W :   S  A  D  L  I  E  A  G  K  G  L  R  E  *  K  Q  N  S  *  I  A  K  L  L  K  :  G  C  I  T  S  S  T  L  S  K  I  P  V  K  V  S  D  I  Y  F  Q  C  L  G  *  Q  T  M  G  F  T  T  D  C  I  L  S  L  D  S :   L  *  T  R  R  Q  R  N  M  V  P  K  Y  R  R :   L  F  L  L  S  D  *  Y  D  D  M  N  R  E  R  D  I  A  N  F  G  L  S  F  W  F  F  S  F  G  E  W  *  T  *  L  R  A  R  Y  H  R  F  K  F  W  L  R  Y  I  M  T  T  R  E  K  T  G  V  V  S  M  N  *  Q  L  D  Q  C  *  S  *  Y  L  H  :  Q  *  I   </second_frame>
            <third_frame>   R  *  W  S  K  V  T  L  S  F  L  S  S  R  S  F  *  L  K  C :   Q  H  S  N  H  K  P  W  C  *  F  H  Q  V  G  I  F  R  E  S  *  C  F  C  *  E  S   : G  Q  R  I  *  *  K  L  A  K  A  S  G  S  E  S  K  T  H  R  *  Q  S  F  *  R :   V  V  L  H  R  V  H  S  P  K  S  R  *  K  S  Q  T  S  I  F  S  A  W  D  S  K  Q  W  D  L  Q  Q  T  V  Y  S  H  W  T   : V  C  R  R  G  G  R  E  I  W  C  Q  N  T  E   : G  C  F  F  F  Q  I  N  M  M  T  *  T  E  S  A  I  S  Q  I  L  A  *  A  S  G  F  S  R  L  V  N  G  K  H  N  *  E  R  D  I  T  D  S  S  S  G  *  G  I  L  *  R  L  E  K  K  L  E  L  *  V  *  T  S  N  L  I  N  V  R  V  S  I  C  I :   N  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0165F06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79259" stop="79199"/>
                    <exon start="79111" stop="79029"/>
                    <exon start="78925" stop="78850"/>
                    <exon start="78482" stop="78364"/>
                    <exon start="78238" stop="78194"/>
                    <exon start="77392" stop="77366"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGDGVRSLLAFYPPEASNSNVSIVITSLGADFTKLESFGKVDAFAENLVSGFDRSWQRPPGVKAKLIDSKASKGLYYIEYTLQNPGESLRHLFSVLGIANNGIYNRLYTLTGQFVDEEAEKYGAKIQKAVSSFRLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 2024 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5720 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 32 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:40:09
-->
