<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:43:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313280" ref_strand="+" ref_description="SGN-U313280        Tomato 200607 #1 [53 ESTs aligned] arabidopsis/peptide: AT4G27440.2 | Symbol: None | similar to protochlorophyllide reductase A, chloroplast / PCR A / NADPH-protochlorophyllide oxidoreductase A (PORA) [Arabidopsis thaliana] (TAIR:At5g54190.1); similar to NADPH-protochlorophyllide oxidoreductase [Cucumis sativus] (GB:BAA21089.1); similar to protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea (GB:S20941); similar to protochlorophyllide reductase [Pisum sativum] (GB:CAA44786.1); similar to NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum] (GB:BAB93003.1); similar to NADPH:protochlorophyllide oxidoreductase [Daucus carota] (GB:AAF20949.1); contains InterPro domain Glucose/ribitol dehydrogenase (InterPro:IPR002347); contains InterPro domain Light-dependent protochlorophyllide reductase (InterPro:IPR005979); contains InterPro domain Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198) | chr4:13725552-13727358 FORWARD | Aliases: None (evalue: 2e-174, score=609) genbank/nr: gi|21068893|dbj|BAB93003.1| NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum](evalue: 0, score=674)">
      <seq>caaattcttactacacacactatcagtccaaaaatcattttttaaaatctccatcttacaattttttcaaaacaaaaatcattttcctaatataatcatggctcttcaagctgctgcattgcttccttctactttctctattccaaaggaggggaaaactagtgcatctttgaaggattcgagtctctttggaatttctctctctgaccatgttaaatctgattttggctcttcattcaaaatcaagagcggaagaaagtcatccctcggagctattagagccgagacaatggttgcatctcccggtgtaacgagtacccctgtgacaggaaagaaaaccttaagaaaaggttgtgtagtaatcactggagcgtcttcaggactaggactagctacagcaaaagctctggctgagacagggaaatggcatgtaattatggcatgtagagactttcttaaagctgaaagagcagcaaaatcagcagggatgcctaaggagaattatacaataatgcatttagaccttgcatcgcttgacagcgtcagacaatttgtcgataactttaggagatcaggcaatcctcttgatgtattggtttgcaatgcagctgtttatcagcctaccgcgaaagagccttcgtttacagctgaaggatttgagcttagtgttgggactaaccatcttggtcatttccttctttcgagattgttgattgatgatttgaagcagtctgattacccttcaaagagactcatcattgttggttcgattacaggaaacacaaacacattggctggaaatgtacctccaaaggccaacctcggggacttgaggggtttagcaagggggctcgatggacttaacagctcagccatgattgacggtggtgactttgatggtgccaaagcttacaaagacagcaaggtttgcaatatgctcactatgcaggaattccatagacgataccacgaagagactggcatcacatttgcctccctataccctggctgcatcgcgacaacagggctattcagggagcatatccccttgtttaggctccttttccctccattccagaagtttatcaccaaaggattcgtctccgaggcagaatctggaaagagacttgcacaggttgttagtgatccaagtcttacaaaatcaggtgtgtactggagctggaacaagaactcttcctcctttgagaaccagttgtcagaagaagctagtgacgttgagaaagcgcgtaaagtgtgggaagtcagtgagaaactcgtgggattggcttagattttttgctgattgagttcaaccatcaccaagacgaacacgaaaaaggagttgatgaaggagaatttgaatcgagtctgttttgttgtagttaaaaagttgtcacttcgtaaaatttttgagttaggaataaatatcattcatccttttagaatcgagcgcttaccaacacgccaacaattatagcgctcacaactttaagtccacccaacaagcgtcatgttcgatcaatgactcactcaacaatttccagtatgaatgatcatgtgaattatgattccgtattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10904" stop="14364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11204" g_stop="11354" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11355" i_stop="11697" i_length="343">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11698" g_stop="11793" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="247" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11794" i_stop="12292" i_length="499">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12293" g_stop="12821" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="776" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12822" i_stop="12921" i_length="100">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.759" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12922" g_stop="13280" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="1135" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13281" i_stop="13620" i_length="340">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13621" g_stop="14065" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1580" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U313280" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11204" e_stop="11354"/>
          <exon e_start="11698" e_stop="11793"/>
          <exon e_start="12293" e_stop="12821"/>
          <exon e_start="12922" e_stop="13280"/>
          <exon e_start="13621" e_stop="14065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAGGTTTGTCTTTCATTATATTATCTTCGATTTAATTTACGTGACACTTTTCGTTTCCTAAAATTTGAATATCTACGTCTCCATCTATGTTGGTGTAACTATAAATCATTTCAGTAAAAATAAAATAAACATTTTACAGTTAAATTGCTACTAAATATAAAAAATATGTCATTATTTTAACTGATTAAAAATGAAAGCCTGACGATCGCGTAAATTAGAATAGGGAAAGTATGTATAAATTTTGACCAATGATATTAAGTTGATCTAGTTCAATTTAATTTCGAGATAAATTGACTCTAAAAAAGCCAAAGAAATACTTTTTTTACTCATTTATGTGATGTTGCAGGGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGGTATAATTTTAGCTTTCAGGTGGTTTAATTCGATGCAACGCAAAAATAAAAATTGTCATTAAACTTTACCTACTGTGTAACACTAAAGTCACAAAACACTGTTTTCTGTCACATTATAAAGTAAATTAACTTTACAAGGTATACTATTACATTTAGTGATGATATAGGTGAAATTAACCTACTGTAATTTCGTTACAGATTGGAGGAAAGTAATCCCCCGTTGCTATTAGAGCCGAGACAATTGTCACAACACACATTTTTTTGTCATATTATAAAGTAACTAAACTTAACGAGCAATTCTAGTACACATACGTGAAATTAACCTGTTAGAATTTCATTACAGAAACAAGTCATCCCTCAGAGCTATTAGAGCCAAGACGATGTCACAACTCACAACACACATTCCTTTTGTCACATTATGAAGCAACTGAACTTTCCAAACTATACTAGTGCATTCAGTGACCATACGTGAAATTAACCTGTTGTAATTTCGTTACAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAGGTAACAGTCAGACCTCTTTATAACAACATCGTTTGTCTAGATAGTTTTGATACTCATTTTAGTGGGAGACTAATCGTTGTTACTGAAAATCAAATATCAGGAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAGGTAATATTTATTAGTGTCAGTTTCACGTATAACCACTGAACTTTATCCACTATAACAGTAACCGTAAAGATAAGATACCTGGCCTAACTCAATCTCAAAAGTTAGCTCGTGAGGAGAGGATTGCTCGAGTCTATATTAGGAGAGCACCAATCCATTCATCAACCAATGTGAGACTTTTATTCACTCTAACACTCCCCTTCACGCCCATGCCCAACTGAAGCGTAGACTGGGAGCCCAAAGAGGGATACCATGTAAAGATGATTTTAGGCCTAACCAAGAAACTAATTTTTGTCACACTAAAGTTACTAAACATAAGATGTTGTTTGTTTGTTATTTACAGGTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAC</genome_strand>
        <mrna_strand>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG....................................................................................................GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG....................................................................................................................................................................................................................................................................................................................................................GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313769" ref_strand="+" ref_description="SGN-U313769        Tomato 200607 #1 [65 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50(evalue: 7e-108, score=387) genbank/nr: gi|18416995|ref|NP_567775.1| expressed protein [Arabidopsis thaliana] gi|14030723|gb|AAK53036.1| AT4g27450/F27G19_50 [Arabidopsis thaliana] gi|15028057|gb|AAK76559.1| unknown protein [Arabidopsis thaliana] gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis thaliana] gi|21593019|gb|AAM64968.1| unknown [Arabidopsis thaliana](evalue: 5e-106, score=387)">
      <seq>atttcatcttgaagctaaaaaaaacaaaaaaaaaaacaaacgatgttggctatatttcacaaggcatttgctcatcctcctgaagaattaaatagtcctgcatcaaaaaaatgtttacttccacaacaaacgctacaaaaattcgtatcgactcgtccatttgacacctcttatgttacttttggagatgttgctgctcttgcttttgttcgtcctaattgcacctccttgctcaatcacaaacaaaggtatttttgtggttatgatgatatttactgtttgttcatggggagtttgaacaatttgtgtgcacaaatcaaacaatatgggctatcaccaaaaggtacaaatgaagccatgctagtcattgaagcctacaggacacttagagacaggggaccttatccagctgatcaagttattaaggattttgaaggaagttttgcttttgttatctatgatagtaaaactggaactgtatttgttgctttgggttcagatggtggggtgaagttattttggggtattgctgctgatggatctgtggtgatttctgatgatgtagaggttattaaagctggatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaacaagatgagggctatgccaagagtagatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctagagttggcagtgaagctaactggtctgactggaacacttcttactaagtcgattctctgcaattttcaaacttcctttagtgtttgttctgttttggttagattttcgagtttgttttaggtttggtttctttcctgtacgtgctttgcacctgtgtataacgcttgaaaaataaatgaaacattagaaatgattcagcttattcgatgaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16866" stop="13978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16566" g_stop="16319" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16318" i_stop="15574" i_length="745">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.367" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15573" g_stop="15330" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="492" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15329" i_stop="14934" i_length="396">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14933" g_stop="14813" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="613" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14812" i_stop="14639" i_length="174">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14638" g_stop="14281" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="971" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="972" polyA_stop="990"/>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U313769" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>971</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16566" e_stop="16319"/>
          <exon e_start="15573" e_stop="15330"/>
          <exon e_start="14933" e_stop="14813"/>
          <exon e_start="14638" e_stop="14281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAGGTAAAATAATTACTACTAATTTTACTACTTTTTCGGTTTATTTTATATGATACTGTTTGATTTTGATTTGATAATAACATAAAATTGTATTATAAAATTTTTCTTGTATTAGGGTATAGGTGGATCGCGCTCCCTAGGAATTAGTATGAAAATTTGTTTAGTCTGATTTAGTTGTCAATGTATGTAAAAAATAATTAGTTTAAAATATTTTTTTAATTTAATAAATCAAGAAAAAAGTACTATTTTTGTTCAATTTAATGTAAAACTATTTGACTCTGAAATGATATTTAAGGAGAAAAAAAGGAAGATTATCGAAGTTTGTGCTCTAAAATAATATTTAGATGTTTTTGTGGTTGGTAATCATTTCATCATTCGGAGTAAAAATGATATTTGAAAGTTAAATTGTGCATAGTAATGTGATATTATTTTTGGAAGAGACTAAGAATGAAAAGTATTCCACATAAAATGAGACCAAATTTTGCCCTTAATATTAGTTATTTTCGAATTTAGAGAAGTGAAGTAAATAAAGACTAAAATAGTTCATAAGATATATATATATATCAGTCAAATTACACCCCATAACTTCTTAAGAATTGTGTAAAACAATAGCATAACGAGACAACTAAACAGGAACAGAAGGAGTAGCTCGTAGCTAGCTGTCTATGAATTTTGTTGTTTAGCTGAAAGAATGCTTTTTTGTATTGAATTTCATGGAATTGAAGCGCGATTATAATTATTGTTGTAGGTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</genome_strand>
        <mrna_strand>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334587" ref_strand="-" ref_description="SGN-U334587        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to auxin down-regulated protein ARG10 (Vigna radiata) GI:2970051, wali7 (aluminum-induced protein) (Triticum aestivum) GI:451193 | chr4:13727493-13728892 REVERSE | Aliases: F27G19.50, F27G19_50(evalue: 5e-72, score=268) genbank/nr: gi|18416995|ref|NP_567775.1| expressed protein [Arabidopsis thaliana] gi|14030723|gb|AAK53036.1| AT4g27450/F27G19_50 [Arabidopsis thaliana] gi|15028057|gb|AAK76559.1| unknown protein [Arabidopsis thaliana] gi|20259059|gb|AAM14245.1| unknown protein [Arabidopsis thaliana] gi|21593019|gb|AAM64968.1| unknown [Arabidopsis thaliana](evalue: 4e-70, score=268)">
      <seq>atccagctgatcaagttattaaggattttgaaggaagtttagcttttgttatctatgatagtaaagctccacctgtatttgtagctttgggttcagatggtcgggtaaagttattttggggtatcgccgctgatgcatctgtggtaatttctcatgatgtagaggttattaaagctgtatgtgctaagtcatttgcaccctttcccacaggttgtatgttccatagtgagaaaggactaatgaatttcgagcacccgatgaccaagatgagggctatgccaagagtacatagtgaaggggtaatgtgtggagccaacttcaaagtggatatgtattcaagagttaatagcatccctatagttggcagtgaagctaactggtctgactggtcacacttcttactaagtcgattctctgcaattttcaaacttcctccagtgtgtgctctgctatggttagattttcgagtctgcattaggatcggcttctttcctgtacgtgctttgcacctgtgcataacgcttgaagaataaatgaaccattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15718" stop="14004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15418" g_stop="15330" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15329" i_stop="14934" i_length="396">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14933" g_stop="14813" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="210" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14812" i_stop="14639" i_length="174">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14638" g_stop="14304" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="546" r_length="336" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U334587" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U334587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15418" e_stop="15330"/>
          <exon e_start="14933" e_stop="14813"/>
          <exon e_start="14638" e_stop="14304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTGGTAAGTATCTGTATTACTCCCTCCGTCCTATTTTATACGAGTCAGTTTGACTATTGACACGAAGTTTAATATAGTTTAGAATAAGTTGATACAATATTTGTTTGTGTGCCTATAAATTATTTCATTAAGGATAAAATAGTCTATATAGAAATATGTCATTTTTTCAACAGTGACTATAAAAGACACTGAGTCATATAAACTGGGATAGAGGGGAGAGAGGGAGTATTACTTGTTTGTTCATTTACTCAGCTCAGTTTCAATATGTTTGTTTGATTTTGACTTGATATGAAGTTTAAGAAAGTAAAAGACGGAGTTTTGAATCTTGTTGTGTTTAAACTAAAGATATTTTGGATGTATCAAAATGTGGTTTAATCTGTTGTCGTCATACAAGTGCAGGGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAGGTAACATCTATAAGGAATTTCATATTTTATAGATGGAGGAATATTTTGGTTTCTTCGTTTCGTAGTAAATAGGAGAGGAAGTTGAATTTAGTTCTTCGATTTTACAAAATTTGATTCACTGACTTGGCTACATCAGCCCCCTCGTCTACTTAACGTTCCAATTGAAATGTACAGGTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGG-AACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGA</genome_strand>
        <mrna_strand>ATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTAGCTTTTGTTATCTATGATAGTAAAGCTCCACCTGTATTTGTAGCTTTG............................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATGGTCGGGTAAAGTTATTTTGGGGTATCGCCGCTGATGCATCTGTGGTAATTTCTCATGATGTAGAGGTTATTAAAGCTGTATGTGCTAAGTCATTTGCACCCTTTCCCACAG..............................................................................................................................................................................GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGACCAAGATGAGGGCTATGCCAAGAGTACATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTATAGTTGGCAGTGAAGCTAACTGGTCTGACTGGTCACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTCCAGTGTGTGCTCTGCTATGGTTAGATTTTCGAGTCTGCATTAGGATCGGCTTCTTTCCTGTACGTGCTTTGCACCTGTGCATAACGCTTGAAGAATAAATGAACCATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314009" ref_strand="+" ref_description="SGN-U314009        Tomato 200607 #1 [54 ESTs aligned] arabidopsis/peptide: AT4G38540.1 | Symbol: None | monooxygenase, putative (MO2), identical to GI:3426064 | chr4:18023173-18025021 FORWARD | Aliases: F20M13.100, F20M13_100 (evalue: 9e-112, score=400) genbank/nr: gi|24745927|dbj|BAC23045.1| monooxygenase [Solanum tuberosum](evalue: 0, score=671)">
      <seq>ttaattaaaaattaaattgggagaaacagagaaataatggagactgaagaaaatattgtaattgttggtgctggtatagctggtcttgctacttctttggcccttcacagattggggctgcggagtattgtgttggaatcagctgattcgttgcgagctactggatttgcattggcgttgtggactaatgcctggagagctttggatgcattggacattggggactctcttagacaacgttctttatccattactgggtttaaaagtttctcagcggaatcaggtgcacctatcacggaggtatcatttgtggggaataacagtgtggagtatgaaagtcgttgtgtgagaagaaaagatctgttggagacattagctaatgaactgcctcaaggcgctattagatattcttctaaggtagattccgttgaagtatctggaccattgaaattggtacatcttgcagatggttgcactattagaaccaaggccttaattgggtgtgacggagtcaattctgtggtggcaaactggcttgggcttcagaaacctgtctattctgggcgctctgcaattagaggctttgttgagtatcccgaaaaacatggttatcagcctaagttccacgcatattttggaggtggagttcggtttggatttcttcctagtgatgagaagagtttatactggttttgcacattcacaccatctgttgttcattttgatggaaatgcagaacaagatccaattaaattgaagcaattcgtgttgaacaaggccagtaatgtgtctaaagaactctccaccgttatagacagaacaactctcgactctatatctattgctcagctgaaattgagagtaccatggaatgttctgtttgggaatattttgaaaaataacgtctgtgtggtaggtgatgcacttcatcccatgactcctgatcttggtcaaggtggatgttctgctttagaggacagtgttgttatcgcaaagtgccttgcagaagccttgataaaaccgataacagaacaagaagacgatgaatctatgaggattagaaaaggactcgagaaatatgctaaagagaggagatggagaagttttacatttatcagtgctgcttatttatctggtttcatacaagagactgataacaagataatcagtttcttaagacaacattttttaggtggagttactatatcagttacactaaaaattgctaacttcgactgcggaaaactagctgtttcttagtagctccaattggatcctttagaggctatgaatatcttttatggactttgtttaatatctatctagcatacatgttccggtttagttgtgtctaaagaattgtaagaccgagtcggatccttattttgcaataatgaaattgtgtactacatcaaagatatccaagaacatcagttgtttagaagcaaatatggtaacatctgcattttataattatcatggaatagaaaaaaaaaaaaaaaannnaacccccaaattttttcccccaacccccaaaatcccttttcaattttccaaaaaccataaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="23183" stop="75332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23483" g_stop="23592" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23593" i_stop="24079" i_length="487">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24080" g_stop="24226" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="257" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24227" i_stop="24364" i_length="138">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24365" g_stop="24430" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="323" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24431" i_stop="24889" i_length="459">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24890" g_stop="25055" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="489" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25056" i_stop="25154" i_length="99">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25155" g_stop="25386" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="721" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25387" i_stop="25713" i_length="327">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25714" g_stop="26487" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="1495" r_length="774" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26488" i_stop="29131" i_length="2644">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.358" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29132" g_stop="29145" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1496" r_stop="1509" r_length="14" r_score="0.500"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29146" i_stop="29353" i_length="208">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.710" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29354" g_stop="29369" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1510" r_stop="1525" r_length="16" r_score="0.688"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29370" i_stop="30822" i_length="1453">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.586" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30823" g_stop="30846" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1526" r_stop="1549" r_length="24" r_score="0.417"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30847" i_stop="31179" i_length="333">
            <donor d_prob="0.731" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="31180" g_stop="31201" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1550" r_stop="1571" r_length="22" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U314009" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23483" e_stop="23592"/>
          <exon e_start="24080" e_stop="24226"/>
          <exon e_start="24365" e_stop="24430"/>
          <exon e_start="24890" e_stop="25055"/>
          <exon e_start="25155" e_stop="25386"/>
          <exon e_start="25714" e_stop="26487"/>
          <exon e_start="29132" e_stop="29145"/>
          <exon e_start="29354" e_stop="29369"/>
          <exon e_start="30823" e_stop="30846"/>
          <exon e_start="31180" e_stop="31201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTAAAAATTAAATTGGGAGAAACAGAGAAATAATGGAGACTGAAGAAAATATTGTAATTGTTGGTGCTGGTATAGCTGGTCTTGCTACTTCTTTGGCCCTTCACAGGTAATAATTTCTATTCTATTACTTGTTCAATAATTCTAAAATTTTGATTTAGAAGAACTTGATCTCAACGAGCAATTATGTCCTCAAATTTTGGACGTACCTAAGTAGTAATACGCGTAGGATGTCAGGTAAGCAGGGTTCATCCGAACCCCTTCAGCAGAAAATTATATTATTTATACGTAGTTAAAATAATTTGTTATGTATATATAGTAGATGTCGAACCACCTTAAGCTACTTCGTGAATCTATTTCTGCAGATTTTGAATCCCCTGGTCAAACTGTTAGATAAGATGTCACATTGGACGTTGTGTTAACTTGTTCAACTTTTGAGTAGTTTAAGTGTTACTTGGACATATTCAGAGTTGGAGGATATAGATGTGGGGCTAAGTTAGATGATGTATTTATATATTATGATGATTTTTTGGTATAATAGTGCTGTTAGTTGAGTGACGATTTGAGAAATAACTTGGCGGAAGGTGTGTATGTAGATTGGGGCTGCGGAGTATTGTGTTGGAATCAGCTGATTCGTTGCGAGCTACTGGATTTGCATTGGCGTTGTGGACTAATGCCTGGAGAGCTTTGGATGCATTGGACATTGGGGACTCTCTTAGACAACGTTCTTTATCCATTACTGGGTGAGTTACCTCTATATTATTAGTTAGGATTTACGATTACTAGCAACTTGAAGTTCAATTTCGTATTTTTATGGTCAAATGTGTTTTGCGGAGTTCTAGCTCTGAAAAATAACGTTACTGATTGTCCAAAATGTGCAGGTTTAAAAGTTTCTCAGCGGAATCAGGTGCACCTATCACGGAGGTATCATTTGTGGGGAATAACAGGTTAGCGTTATATCAATTTTCGTATTAGTTGGGGTCGGTTATATAAGTCCTTTTATCTATTCGTTTTATGTATCTTCATTTTCTTCTAAACACTTGATAATTTAGTTTGTAAGGCAAATTCGAATCTGAACTCTATATAGAGATGTATAAATTTCTAACCATCGATTTAAAAGTTCCTCACAAACGTCGAAGTAATTCAAGTACAGTAAGAACCAGTAACGTATTTAACCTCCGGTTCTCACAGCATCGATATTTGTAGAGAACAATCACATCTGTTTACGAAGGACTTATGAATCAAGGATGCTGCATACTGAATTTTCTAAATTGTTCACTAGTACTGAGTTGACGTGGTTTTGTATGTCTTTCTTCCGACTATTGGATGGACTGATCATTCGTCAGCTAACATTTTCTATTTTTGAAGTCAATAGTCATCTAAGGTCAGTTATATTATCGTTGCAGTGTGGAGTATGAAAGTCGTTGTGTGAGAAGAAAAGATCTGTTGGAGACATTAGCTAATGAACTGCCTCAAGGCGCTATTAGATATTCTTCTAAGGTAGATTCCGTTGAAGTATCTGGACCATTGAAATTGGTACATCTTGCAGATGGTTGCACTATTAGAACCAAGGTAAATCTTTCACTGATATATCAGACGTGTTTTTGACCATTATATCAATTCCTTACGTTAGTCTTAACACGTGACTAACTTTAATAAGCTTCAATTAAGGCCTTAATTGGGTGTGACGGAGTCAATTCTGTGGTGGCAAACTGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATTGTAAGCCACCTCTTACATACCGTTTCTTTTGAAGATTTACTTTTTGAAGGATATTGGTGTTGGCTAGAGAGCTTAACTCTCTGAAGTGGGAGCCTTGACGTAATTGGTAAAGTTACTGTCATGTGACCTAGAGGTTACGGATCCGAGCTGTAGAAACAGCCTCTTGCAGAAATGCAGGTTAAGATTGCATACATTAGTTCCCTGTGGTCCAGGCCTTCCCCCGAACCCTGTGCATAGCAGGCGCTTAGTGCACCGAGCTGTCTAGATATCTTACATCTCATAAACTAGTCATGTTTAGTTGTTCATTTTAATTGGGATTTTATGCAGTTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTTAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCGAGAAATATGCTAAAGAGAGGAGATGGAGAAGTTTTACATTTATCAGTGCTGCTTATTTATCTGGTTTCATACAAGAGACTGATAACAAGATAATCAGTTTCTTAAGACAACATTTTTTAGGTGGAGTTACTATATCAGTTACACTAAAAATTGCTAACTTCGACTGCGGAAAACTAGCTGTTTCTTAGTAGCTCCAATTGGATCCTTTAGAGGCTATGAATATCTTTTATGGACTTTGTTTAATATCTATCTAGCATACATGTTCCGGTTTAGTTGTGTCTAAAGAATTGTAAGACCGAGTCGGATCCTTATTTTGCAATAATGAAATTGTGTACTACATCAAAGATATCCAAGAACATCAGTTGTTTAGAAGCAAATATGGTAACATCTGCATTTTATAATTATCATGGAATAGAATAAGTGTTTTCTTATCTGAGATTATTTTGTGCAATTAGATATACTTCATCTATTTCAACTTGTTTATCTGATTTTGATTTGACACGAAGTTTAAGAAAGTAAAGAAATTTTCTTTATCTTAGCGTGGACCACTACTTTGGTTCAATGACTTCCAAATTACACAAGGTATCATTGTTTTGTTACATACTCTAAGTAGATAATCTGAGTAGATGTAGGAGGAAATGCAGGTGTCAAATCATGTCTTTAATTAATGTTGTATAGTTTCTCATTGGAAATTTGTTAGAAGTCTGCAGAGAATTTCTGTACAGGGTGTGTTACGTAATGGGACCAATTCACATCGTCTAGCGTAACACACACTGCAAAGATAGTCGATGACCTCGAAATGAAAACAATATTTACAGAAAGTTAGAACATAGTGAGTATTATTTGGTGAAGTATCTTCGTCCTCTAAAAAGTAGGGTTTAGGTTTTCGAGTTTGGGGTTTCGAGTTTAGGGTTTAAAGGACCTGGTCCCTGGACTCTTGGTGGCTTCATATGATTCATGACTCAATCCTTAACTGGTTTGGCAATATGAGATGAGATTCATTGTCGTACCTAAACCTTTACATAATTCACCTACGGGATATATATTATAGATCTCGTATAATATTAACAAGCAATGTTGGAATAATGTCATGAATAAGAACCTTGTTATTCTTAGCATTTGCTTCAACTACTGCTTTAGTTATTTTCCATCTCATCATATTTGAAAAATTCCACATGGTATCATTAATTCACATTGTCTTTGGTGACACGAACGGCAGAGATAGTCGATGACCTCGAAATGGAAACATTATTTAGAGAAAACAAATAAGGAATAATTGGTACTAGCCACCAAGAGTGAAACATTTAATTGAAATTTTGTTTATAACTAATAATTTGAGATTTATAGTTAATAGCGTGAAAGTAATTAATTCTAGCATAAAAACTCACATTTGATGTTTCTTGTCATAGTACTGTTAAAAATTTAATTATGACGGATCATCTGTGACTTGTTAATTGGTCATGTTATCGGATTGGAACTTAGTTGCAGTCTGCCTAATTTAATATATGGAAAAAAATAATTGAACTTTTTCCTAAATTTTTTCCCATTTGTAATAATAATAATAATAATAATTTTTTTATATTATGTTTTTAATAAAAGTTGGTTTTTTAAGAAATCGTAATTGACTCTTGTTTTTTCATATTCTCTTTCTAATAAATAACTTACAATTCAAAAATAATTAAAAAAATATTATTTAATTAATTAGATGTTTAATTTAGTCTAGGGATAAAATAATAATTTAATTTTTCATCTTTGGAGCTTCCCATTTGTAATAATACTAGTCTTGGTTACGTGCATTTGCACGTATATATATTCTATTAATTATATTTTAATGCTAGTTTCCAAAGATAATAAATCATATATTTTAATAGAGTTATATTTATAGAGTTCAAATATAAATTAATAGTTACTTTATGTTAAACATGTATACATGTTAGTCTATGATGCAAAAGAATACAATATTTTTTAAAAATGTATTTCTTTATAGTAGATTTGAGAATAATAAGTTACATGTAAATGCTTTTTTTTTTTTGGTTTCCCACCCGGTGTTTGGTTACATGTAAATGCTTCCTTGTCCACTTGCATTTGTTCATTTGACAGGCCCTACACCCATTTAAACAATTTAGTGATCCACCCACGTAATCCGATCCATTAAAAAACATGATATGACCTATTTTATTTTGTCTTTAATCCTAATTCAAGGTTTAAAGAGAGAGATTAATTTAGGATTAAAGATAAAATAAAATGGGTCATATCATATTTTTTAATGGGTCGGGTTAGGTGGGTGGATCACTAAATGATTTAATTTATTTTTTAAAATTTTTGGTTTGTTATATAAATAATTAATATCAATAAATTTTAATTAAAAAATAATTTAATAGATTGAGTGACTTTCTGAGGAAAGAGTGAATAGTTGAGTGACTTTTGAGTTAAAATTCAAAGTTGAGTGACTTTCAGAGAAAGAAGTGCATAGTTGAGTGACTTTTGAGTAAAAATTGAAAGTTGAGTGACTTTCTGAGAGAAGAGTGCATAGTTGAGTGACCATCTGAGGTATTAACTCTACACATTCATATAAATATTTATTAAGAAACACTATAAATTATCATAAGTTTACATATTTAAAATTTGAGAGTTATGAGGAGTTGTAAAGATTATGGAAATATAAATTTAGAGCCTAAGATTCTGTGGTCAAGAATTGATCTCTTGAACATGACTAACTAAAAAGCAAGAAAAAATCATTATACATAATTCATAAGATTTTCCTCTATCATGAGTACATCAAATATGAATGACAATACAATAACATTTGCTTAAAAAAAGATTGTCCTACAATACACATTTATATAGATATTCATTGAGAAACACAATATATTATCATAAGTTTACACATTTAAAATTTGAGAGTTATGAGGAGTTATAGAGATTATAGAAATATAAGTTATGAAGATAAAGAAATACATATTTCTTAGTTTAAGAAGGGAAAATTAATGAGATAATTTTAGAGAATGCTAAATTCAAAGTTCCAATTATGTTTGTAAGATTAGTTTCTCCCTTATATATTTAATAGGAGAAAATGAAAAGGTAAGAAACTTAAAATGTTAATAACAACAAATTACAATAAAAAAGTTCTCTAATCGAAATTAATTTTATTAGTCACAAATTTACATATCATTACTAACTTAAAAAATACGTTGTTTCGGATTTTCATAAAGACACCTTAACTTTGTGACTGTCCTATTACATCACTAAACAATTTTGAACAGATGTTATCATACCATTTTTCGATCAGCCCTAAATTTTAACAAGCAAGTGAGTTCACACCCCAATCATTACGTGACACGTGTTAATTAAAATTATTAAAAAAAATTCATTTAAAATTTTTCCTTTATCTCTTTCTTTTTTTATTTTTCTCTCTCTTACTTTTAAATTTTAATTTTGATTTATCTTAAATTTCATTTAATCTTCCACCTTCCACTTTCATCCCTTCATTTTCTTTTTTTCTTCACCCTCCAGCCTCCCATGTCAAATTGAAACTCATTTTCATTTTCTTCTTCTTTTTTGTTCTTCTTCTCCAGTCAAATTCTTTATAAAATTCATACAATTATTTAAACTTTATTGAATTATTGATAACAAAATTAATTATTTTTTAAGAAAATCTAAAAGTACGAAGGTATTATCAACTACTCATTTTCATATACATTCAAAATTAGAAATGGAAATTTTAAAAGAATCAATGAATTTCTCAAAAATTGAAAGAACTTAATTGAAGTTGAATAAAAAAACTATATGATGATTCCTAATCATCTTCAAATCTAATGAATTTATCGAATTGTTCGAAATGTAAAAAAATATTTAGATAAAATTTTAAAACTAAAGAGAGTAAAACTAATAGTAATAAAAAGTAAAAAGTGAAGTTGTGGTAAAAATGATATTGAACATAAGAAGTTTCAATGGACGGAGATGAAAATCAATTTTGAAAAGAAAGAGAAAAATAAAAAGGAAAAAAAATTAAAATAATAAGAAAAATAAGAAAATATATTTTATAACAAAATACTTATAAAAATAAAATTGTATTAGTTATTTTAGGGTGCTCACTCTTTGTTGAGAGAGTGCACACTACTCTCTTGTTAGATGAACGAAAAATGATGCAATTATATCTATTCAAAATTGTTTAGTGGGGTAATAAGACGATTGTAAAGTTAAGGTGTCTTTTTAAAAATTCGGGACAATTTCAGTTCTGACTTTATGTCTTTTCTCTAATTAAAACAACAAAAATATAGTGTATTCTTACAAAGTGCTATCGGGTGTGCTCAATTAGAATATATCATTAAAAATATTCAATACTAAAAAAATATATGTATTCATTTATTTTGTGATTGATTACTAATATAATATACCATATCATATATTTTTAGGGACAAAAAGATTCAGTAGATACTATAGATAATATACCTTTAATTCAACCATGGAAAAATCTAAAATATTAATTAGATAGAAATATATATAATCATTTTTTTGTTCATGAAGAAATAAAATAAAAGAGAATAAAATAATATTAATTGAAATCAAAATAATACAACAATGAATCTTCAAAATGTTTGAAAATCAATCAAATTAATACAACAATGAATCTTCAAAAGGTTTGAAAATCAATCAAACTTTTATACTACTACAACTCACGCATGAATCTCCAAGATAATTAAGTTTCTTTCTTCAATTTGTTGAACTTGTACCAAATAATGTGATGAATCTTTCAAGAATATACCGATGATCTTCATCAAAGTGAAGATCATATCGTGATATCATCGTTTCTATGTCTTCTTTTTTGATTACTTAACTACATGCTTGATGAAGAGAAAAATGAAGAAAATAAAATTAAAAGATTATACTACTAAAAATAAAGAATGAAAAAATGGAAATGAACATGCAATATCTCCATAGATAATTGGTATTTATAGATAAAATAAGTCATAAAAATAGTTAAAAGGGAATTGAAAAGACATGCTATTTAAGTGGAGAATGTCAATAGATGGAGTTTTTTGTAACTCATTTCATATGATTACAATATTAAATATGATTGAATTTTATAATTAATAAAAAATTTTATATGAAAAGAATTAAAAAAATGACAAAAAAG</genome_strand>
        <mrna_strand>TTAATTAAAAATTAAATTGGGAGAAACAGAGAAATAATGGAGACTGAAGAAAATATTGTAATTGTTGGTGCTGGTATAGCTGGTCTTGCTACTTCTTTGGCCCTTCACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGCTGCGGAGTATTGTGTTGGAATCAGCTGATTCGTTGCGAGCTACTGGATTTGCATTGGCGTTGTGGACTAATGCCTGGAGAGCTTTGGATGCATTGGACATTGGGGACTCTCTTAGACAACGTTCTTTATCCATTACTGG..........................................................................................................................................GTTTAAAAGTTTCTCAGCGGAATCAGGTGCACCTATCACGGAGGTATCATTTGTGGGGAATAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGTATGAAAGTCGTTGTGTGAGAAGAAAAGATCTGTTGGAGACATTAGCTAATGAACTGCCTCAAGGCGCTATTAGATATTCTTCTAAGGTAGATTCCGTTGAAGTATCTGGACCATTGAAATTGGTACATCTTGCAGATGGTTGCACTATTAGAACCAAG...................................................................................................GCCTTAATTGGGTGTGACGGAGTCAATTCTGTGGTGGCAAACTGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATT.......................................................................................................................................................................................................................................................................................................................................TTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTTAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCGAGAAATATGCTAAAGAGAGGAGATGGAGAAGTTTTACATTTATCAGTGCTGCTTATTTATCTGGTTTCATACAAGAGACTGATAACAAGATAATCAGTTTCTTAAGACAACATTTTTTAGGTGGAGTTACTATATCAGTTACACTAAAAATTGCTAACTTCGACTGCGGAAAACTAGCTGTTTCTTAGTAGCTCCAATTGGATCCTTTAGAGGCTATGAATATCTTTTATGGACTTTGTTTAATATCTATCTAGCATACATGTTCCGGTTTAGTTGTGTCTAAAGAATTGTAAGACCGAGTCGGATCCTTATTTTGCAATAATGAAATTGTGTACTACATCAAAGATATCCAAGAACATCAGTTGTTTAGAAGCAAATATGGTAACATCTGCATTTTATAATTATCATGGAATAGAAAAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAANNNAAC................................................................................................................................................................................................................CCCCAAATTTTTTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCCCCAAAATCCCTTTTCAA.............................................................................................................................................................................................................................................................................................................................................TTTTCCAAAAACCATAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314010" ref_strand="+" ref_description="SGN-U314010        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G38540.1 | Symbol: None | monooxygenase, putative (MO2), identical to GI:3426064 | chr4:18023173-18025021 FORWARD | Aliases: F20M13.100, F20M13_100 (evalue: 9e-32, score=134) genbank/nr: gi|24745927|dbj|BAC23045.1| monooxygenase [Solanum tuberosum](evalue: 2e-59, score=231)">
      <seq>tggcttgggcttcagaaacctgtctattctgggcgctctgcaattagaggctttgttgagtatcccgaaaaacatggttatcagcctaagttccacgcatattttggaggtggagttcggtttggatttcttcctagtgatgagaagagtttatactggttttgcacattcacaccatctgttgttcattgtaagccacctcttacataccgtttcttttgaagatttactttttgaaggatattggtgttggctagagagcttaactctctgaagtgggagccttgacgtaattggtaaagttactgtcatgtgacctagaggttacggatccgagctgtagaaacagcctcttgcagaaatgcaggttaagattgcatacattagttccctgtggtccaggccttcccccgaaccctgtgcatagcaggcgcttagtgcaccgagctgtctagatatcttacatctcataaactagtcatgtttagttgttcattttaattgggattttatgcagttgatggaaatgcagaacaagatccaattaaattgaagcaattcgtgttgaacaaggccagtaatgtgtctaaagaactctccaccgttatagacagaacaactctcgactctatatctattgctcagctgaaattgagagtaccatggaatgttctgtttgggaatattttgaaaaataacgtctgtgtggtaggtgatgcacttcatcccatgactcctgatcttggtcaaggtggatgttctgcttcagaggacagtgttgttatcgcaaagtgccttgcagaagccttgataaaaccgataacagaacaagaagacgatgaatctatgaggattagaaaaggactccagaaatatgctaaagagaggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="24897" stop="26389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25197" g_stop="26089" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U314010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25197" e_stop="26089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATTGTAAGCCACCTCTTACATACCGTTTCTTTTGAAGATTTACTTTTTGAAGGATATTGGTGTTGGCTAGAGAGCTTAACTCTCTGAAGTGGGAGCCTTGACGTAATTGGTAAAGTTACTGTCATGTGACCTAGAGGTTACGGATCCGAGCTGTAGAAACAGCCTCTTGCAGAAATGCAGGTTAAGATTGCATACATTAGTTCCCTGTGGTCCAGGCCTTCCCCCGAACCCTGTGCATAGCAGGCGCTTAGTGCACCGAGCTGTCTAGATATCTTACATCTCATAAACTAGTCATGTTTAGTTGTTCATTTTAATTGGGATTTTATGCAGTTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTTAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCGAGAAATATGCTAAAGAGAGGAGATG</genome_strand>
        <mrna_strand>TGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATTGTAAGCCACCTCTTACATACCGTTTCTTTTGAAGATTTACTTTTTGAAGGATATTGGTGTTGGCTAGAGAGCTTAACTCTCTGAAGTGGGAGCCTTGACGTAATTGGTAAAGTTACTGTCATGTGACCTAGAGGTTACGGATCCGAGCTGTAGAAACAGCCTCTTGCAGAAATGCAGGTTAAGATTGCATACATTAGTTCCCTGTGGTCCAGGCCTTCCCCCGAACCCTGTGCATAGCAGGCGCTTAGTGCACCGAGCTGTCTAGATATCTTACATCTCATAAACTAGTCATGTTTAGTTGTTCATTTTAATTGGGATTTTATGCAGTTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTCAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCCAGAAATATGCTAAAGAGAGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342484" ref_strand="+" ref_description="SGN-U342484        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-90, score=315)">
      <seq>ttttgtatcatccggggaaggccaatgttgtggccgatgctttgagtaggaagactcatagcatggggagtcttgcatctcttagtgttgaggaaagaccattggctagagatgttcaattgttagctaacagtcttgtccgattacagatctcagaggagagtgatgggatgattgcttttattgaggctcgatcttctttagtcaagcagattcgtgcacaccagtttgatgacgaaaaattatgtctcattcgagacaaagtattgagaggggaagctaaggaggttgtccttgattctgatggtgtcttgaggatcggaggcaggatttgtgtgcccaagacaggcgatttgattagattgatccttgaggaggcccattgttctcgatattctatgcatccgggagaggcgaaaatgtatcatgatctgagtcagcattactggtggtgtgggatgaagagagatattacagactttgttttgaggtgtttgacttgccagttggtcaagtgtgagcaccagtggcctgggggtgtatctcaaaggatgcctattcttacttggacgtgggagtggattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="38468" stop="37283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38168" g_stop="37583" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U342484" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38168" e_stop="37583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATCCAGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAGATACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTTAGAAGAGAGTGATAGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTG--CACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAAGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCAATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATCCATCCGGGTGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCAGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</genome_strand>
        <mrna_strand>TTTTGTATCATCCGGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAAAGACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTCAGAGGAGAGTGATGGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCAAGCAGATTCGTGCACACCAGTTTGATGACGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAGGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCGATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATGCATCCGGGAGAGGCGAAAATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTACAGACTTTGTTTTGAGGTGTTTGACTTGCCAGTTGGTCAAGTGTGAGCACCAGTGGCCTGGGGGTGTATCTCAAAGGATGCCTATTCTTACTTGGACGTGGGAGTGGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339520" ref_strand="+" ref_description="SGN-U339520        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 2e-24, score=115)">
      <seq>ggtggtacctctaccccaactttgctgagctccaacaccactactagaaactctatcaccctacctgactgtactctgcaacgacctctaccctgtagagctagtggtctagtatggaatgaagaattaggtcgaggcccaccacgacccctttaagaagtacactgccgcattagatgatcgggatctccacaagtaaaacaaaatctctaacctgggaactgctgtgtggaccctgaaaacccacaataattgcctcgccctgaaggtcgctgctgtgaaccgtacgagccctgaaccaggacataagaacccctagatgtttggccaccctcaaatattgtcttagatgcatgaataggtccccgctgctgaaaagaaccactcactctctgtgatcccctacctccagatgaatcaccatgaaactgacttgatatacgggcccttatagggtccccaaactcctccctctcttcatcaattccaactctttggaggcgctcataatggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="39721" stop="40797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40021" g_stop="40537" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U339520" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40021" e_stop="40537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTACCTCTACCCCCACTTTGCTGAGCTGCAACACCACTACTAGAAACTCTGTCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGAGCTGGTGGTCTAGTCTGGAATGAAGAATTAGGTCGAGGACCACCACGACCCCTTTGAGAAGTACACTGCCTCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACTATAATTGCCTCGCCCTGTAGGTCGCTGCTGTGAACCATACGAGCCTTGAACTGGTTCATAAGAACCCCTAGATGTCTGGCCAGCCTCAAATGTCGGCATAGATGCATGAATAGGTCCTCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCT--CTCTCTCCATCAATTCCGCCTATTTGGCGGCGCTCACAATGGACTGG</genome_strand>
        <mrna_strand>GGTGGTACCTCTACCCCAACTTTGCTGAGCTCCAACACCACTACTAGAAACTCTATCACC-CTACCTGACTGTACTCTGCAACGACCTCTACCCTGTAGAGCTAGTGGTCTAGTATGGAATGAAGAATTAGGTCGAGGCCCACCACGACCCCTTTAAGAAGTACACTGCCGCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTAACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACAATAATTGCCTCGCCCTGAAGGTCGCTGCTGTGAACCGTACGAGCCCTGAACCAGGACATAAGAACCCCTAGATGTTTGGCCACCCTCAAATATTGTCTTAGATGCATGAATAGGTCCCCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAATCACCATGAAACTGACTTGATATACGGGCCCTTATAGGGTCCCCAAACTCCTCCCTCTCTTCATCAATTCCAACTCTTTGGAGGCGCTCATAATGGACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339521" ref_strand="+" ref_description="SGN-U339521        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 0.0001, score=50.4)">
      <seq>gcacgagttgagagtctgagacaggatggtttatcggttacagagtgtaaggcgcgtttttgccagttgtctaggcatgcgttggccattattccaaatgaaacagagaggatccgtagatttgtgaggggattgactttctctatcaggtcagctgtgtttcggacatctaggggggacttctttccagtctattgtgagcgccgccaaagaggcagaattgatggagagagaggagtttggggaccctaaaagagctcgtatatcaggtcaatttcagggtgcctcatctggaggtaggggatcacagagagtgagtggttcttttcagcagcggggacctattcatgcatctatgccgacatttgagggtggccagacatctaagggttcttatggcccgggtcatggctcgtacggttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41027" stop="39999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40727" g_stop="40299" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U339521" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40727" e_stop="40299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAGGTTTGAGAGTCTGAGACAGGATGGTTTATCGGTTACAGAGTATGAGGCGCGTTTTTTCCAGTTATCTAGGCATGCGTTGGCCATTATTACAAATGAGACAGAGAGGATCCGCATATTTGTGAGGGGATTGACTTTATCTATCAGGTCAGCTGTGTTTCGGACATCTAGGGAGGGGACTTCTTTCCAGTCCATTGTGAGCGCCGCCAAATAGGCGGAATTGATGGAGAGAGAGGAGTTTGGGGACCCTAAAAGAGCTCGTATATCAGGTCAGTTTCAGGGTGCCTCATCTGGAGGTAGGGGATCACAGAGAGTGAGTGGTTCTTTTCAGCAGCGAGGACCTATTCATGCATCTATGCCGACATTTGAGGCTGGCCAGACATCTAGGGGTTCTTATGAACCAGTTCAAGGCTCGTATGGTTCAC</genome_strand>
        <mrna_strand>GCACGAG-T-TGAGAGTCTGAGACAGGATGGTTTATCGGTTACAGAGTGTAAGGCGCGTTTTTGCCAGTTGTCTAGGCATGCGTTGGCCATTATTCCAAATGAAACAGAGAGGATCCGTAGATTTGTGAGGGGATTGACTTTCTCTATCAGGTCAGCTGTGTTTCGGACATCTA-GG-GGGGACTTCTTTCCAGTCTATTGTGAGCGCCGCCAAAGAGGCAGAATTGATGGAGAGAGAGGAGTTTGGGGACCCTAAAAGAGCTCGTATATCAGGTCAATTTCAGGGTGCCTCATCTGGAGGTAGGGGATCACAGAGAGTGAGTGGTTCTTTTCAGCAGCGGGGACCTATTCATGCATCTATGCCGACATTTGAGGGTGGCCAGACATCTAAGGGTTCTTATGGCCCGGGTCATGGCTCGTACGGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344270" ref_strand="+" ref_description="SGN-U344270        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttgggtcggagcaccctctctagtacgagagtcatgtggtgtggtagtcgcaccaccaccctgataaaagccctctagaacacttaacaccctaaaaagtgtatcctgaagcaaaggtgtgactacaggatctggaggaacctggtcacctctgccatcaatttgaggttttgtagagacctctctagcacgacctctcactggtgctgctccacgtccacgacctctagctactatcgtactactagaacgacatctagctcgagacctacccctacccataactggggcctcaacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40846" stop="41748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41146" g_stop="41448" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U344270" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41146" e_stop="41448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAATCCCTCTAGCACACTTAACACCCTCAATAGTGTATCTTGAAGCAAAGGTGTGACTACAGGATCTGAAGGAACCTGGTCCTCCCTACCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</genome_strand>
        <mrna_strand>TTGGGTCGGAGCACCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGATAAAAGCCCTCTAGAACACTTAACACCCTAAAAAGTGTATCCTGAAGCAAAGGTGTGACTACAGGATCTGGAGGAACCTGGTCACCTCTGCCATCAATTTGAGGTTTTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTAGCTACTATCGTACTACTAGAACGACATCTAGCTCGAGACCTACCCCTACCCATAACTGGGGCCTCAACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333723" ref_strand="-" ref_description="SGN-U333723        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 3e-18, score=84.7) genbank/nr: putative(evalue: 5e-22, score=107)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44508" stop="76723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44808" g_stop="45006" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45007" i_stop="45426" i_length="420">
            <donor d_prob="0.774" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45427" g_stop="45994" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="739" r_length="550" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45995" i_stop="46233" i_length="239">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46234" g_stop="46251" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U333723" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333723" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44808" e_stop="45006"/>
          <exon e_start="45427" e_stop="45994"/>
          <exon e_start="46234" e_stop="46251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACACGTTCCTTGCTGAAAATGGCTATAAAATGAAGTCAAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAATAGTTTCTGTATTTAAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACATTCACATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATTTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGAAGGTCATAATTCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTAATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAA</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTC-AA-TTTTGA-TTTTCAAACACTGAAAA--TTTTCCTTCTCNGTATT-ATTTTTCTCT---AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGC-A-A-GA--TG----A-----ACAACAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCT--GTGCTGAATGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATAAATTT...............................................................................................................................................................................................................................................ATTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312594" ref_strand="+" ref_description="SGN-U312594        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 2e-31, score=133) genbank/nr: gi|14586969|gb|AAK70407.1| pol polyprotein [Citrus x paradisi](evalue: 2e-61, score=239)">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44527" stop="46422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44826" g_stop="45938" g_length="1113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1110" r_length="1110" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45939" i_stop="46010" i_length="72">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46011" g_stop="46122" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1222" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U312594" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>1225</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44826" e_stop="45938"/>
          <exon e_start="46011" e_stop="46122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGTTCCTTGCTGAAAATGGCTATAAAATGAAGTCAAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ATAGTTTCTGTATTTAAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACATTCACATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATTTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGAAGGTCATAATTCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTAATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAA-TTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTC--AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324842" ref_strand="+" ref_description="SGN-U324842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr2:3820372-3820734 REVERSE | Aliases: F7B19.19, F7B19_19(evalue: 4e-09, score=58.5) genbank/nr: gi|53689765|gb|AAU89775.1| pol polyprotein-like [Solanum tuberosum] (evalue: 2e-102, score=374)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45834" stop="150118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46134" g_stop="46842" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46843" i_stop="47778" i_length="936">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47779" g_stop="47813" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="744" r_length="35" r_score="0.657"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U324842" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46134" e_stop="46842"/>
          <exon e_start="47779" e_stop="47813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATAAATGCCGGGGTCCTAAGAAGAACAAGAAAAAGAAGGATCAAACAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATGTAGAAAAAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACTTTAGTGATGACCTTTTCAAACTCAATGTAATAGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTAGCTTGAGTCTAAATGTTTATGGCATGAACATTTGGGACACGTTAATAACAAAACCTTGCGAAAACTGATTAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCAAAATGTCAAATTTGTGTTGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGGAATTCAAATCCTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAACAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAATGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGAAAAAATCGAACTTTAAAAGAAATGATGAATGCATTACTTATAAGTTCAGGTTTACCACAGAACTTGTGGGGGGAAGCTATCCTTACAGCAAATCAGATACTTAATAGAGTGCCTCACTCAAAGACAAATGTAATTCCATATGAGAAATGGAAAGGTAGAAAACCCAATTTGAAATATTTCAAAGTGTGGGGGTGTCTAGCCAAAGTCCAAGTTCCTATACCTAAGAGGGTAAAAATAGGACCTAAGACTGTGGATTGTGTATTCATTGGATATGCCACAAACAGTAAGGCATGTCGTTTTTTGGTTCATAAGTCAGAACATCCGGATATTCATGATAATACGGTAATGGAATCAGATAGTGCTGAATTTTTTGAACATATCTATCCGTATAAAACTAGACTTGAGTCATCTAGTGGGGGATCTAAACAACCCAGAGAAGAACCAAAAGAGAATGAACAAAATGAAGAAA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324524" ref_strand="+" ref_description="SGN-U324524        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance family protein / LRR family protein, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to disease resistance protein (Lycopersicon esculentum) gi:3894383:gb:AAC78591 | chr3:3450548-3453689 REVERSE | Aliases: F9F8.17(evalue: 9e-33, score=137) genbank/nr: gi|30681577|ref|NP_187712.2| disease resistance protein family (LRR) [Arabidopsis thaliana](evalue: 6e-31, score=137)">
      <seq>tactttcacacagagctttttccttgtaccaaaattggaaaatctcaaattgggtgccaatgatcttctcaaaggagttttaccaaagatccacccgagcaacactactctattggagttggatatttctaacacaggaatctctggtgagctgactgattcaattggcaccttcagttccttgaatatcttgaacctcaaaggatgtcgattctctggttccattcctgattccattggcaatcttacacaaattaggtatttggatttcagttataatcatttcaccggccatattccttccacaatctctcaattgaagcacctcacatatctaagtctttcatccaactccttttcaggtgaacttcccgatattttttctaacctccaagagttacgttatttatatctttctaacaacagcttcatcggttcgtttccttctaaaattgtaagcttgacacatcttgaatgcttagacttgtcctacaacttaatgaatgggaccataccatcttcggtgtttagcctccctttgttaggtctgttgtggctcaataataatcgatttagtggactacccgatgagctcaaaacaaacccaacattggtacgcctgtttttaagccataatcaactcagttgttcttttcctcaatcactttcgaatctcacaaactttctatccttgaccttttcatcgatagcatcactgtcgatgagggaaatcaaatcacttttccctaactaaaagttttgatggtatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54520" stop="55892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54820" g_stop="55592" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U324524" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54820" e_stop="55592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTCACACAGAGCTTTTTCCTTGTACCAAAATTGGAAAATCTCAAATTGGGTGCCAATGATCTTCTCAAAGGAGTTTTACCAAAGATCCACCCGAGCAACACTACTCTATTGGAGTTGGATATTTCTAACACAGGAATCTCTGGTGAGCTGACTGATTCAATTGGCACCTTCAGTTCCTTGAATATCTTGAACCTCAAAGGATGTCGATTCTCTGGTTCCATTCCTGATTCCATTGGCAATCTTACACAAATTAGGTATTTGGATTTCAGTTATAATCATTTCACCGGCCATATTCCTTCCACAATCTCTCAATTGAAGCACCTCACATATCTAAGTCTTTCATCCAACTCCTTTTCAGGTGAACTTCCCGATATTTTTTCTAACCTCCAAGAGTTACGTTATTTATATCTTTCTAACAACAGCTTCATCGGTTCGTTTCCTTCTAAAATTGTAAGCTTGACACATCTTGAATGCTTAGACTTGTCCTACAACTTAATGAATGGGACCATACCATCTTCGGTGTTTAGCCTCCCTTTGTTAGGTCTGTTGTGGCTCAATAATAATCGATTTAGTGGACTACCCGATGAGCTCAAAACAAACCCAACATTGGTACGCCTGTTTTTAAGCCATAATCAACTCAGTTGTTCTTTTCCTCAATCACTTTCGAATCTCACAAACCTTTCTATCCTTGACC-TTTCATCGAATAGCATCACTGTCGATGAGGGAAATCAAATCACTTTCCCTAACCTAAAAGTTTTGATGTTATCAT</genome_strand>
        <mrna_strand>TACTTTCACACAGAGCTTTTTCCTTGTACCAAAATTGGAAAATCTCAAATTGGGTGCCAATGATCTTCTCAAAGGAGTTTTACCAAAGATCCACCCGAGCAACACTACTCTATTGGAGTTGGATATTTCTAACACAGGAATCTCTGGTGAGCTGACTGATTCAATTGGCACCTTCAGTTCCTTGAATATCTTGAACCTCAAAGGATGTCGATTCTCTGGTTCCATTCCTGATTCCATTGGCAATCTTACACAAATTAGGTATTTGGATTTCAGTTATAATCATTTCACCGGCCATATTCCTTCCACAATCTCTCAATTGAAGCACCTCACATATCTAAGTCTTTCATCCAACTCCTTTTCAGGTGAACTTCCCGATATTTTTTCTAACCTCCAAGAGTTACGTTATTTATATCTTTCTAACAACAGCTTCATCGGTTCGTTTCCTTCTAAAATTGTAAGCTTGACACATCTTGAATGCTTAGACTTGTCCTACAACTTAATGAATGGGACCATACCATCTTCGGTGTTTAGCCTCCCTTTGTTAGGTCTGTTGTGGCTCAATAATAATCGATTTAGTGGACTACCCGATGAGCTCAAAACAAACCCAACATTGGTACGCCTGTTTTTAAGCCATAATCAACTCAGTTGTTCTTTTCCTCAATCACTTTCGAATCTCACAAA-CTTTCTATCCTTGACCTTTTCATCG-ATAGCATCACTGTCGATGAGGGAAATCAAATCACTTTTCCCTAACTAAAAGTTTTGATGGTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332849" ref_strand="+" ref_description="SGN-U332849        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance family protein, contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-0B (Lycopersicon esculentum) gi:3894387:gb:AAC78593 | chr3:9116875-9119547 REVERSE | Aliases: K3G3.7(evalue: 4e-32, score=135) genbank/nr: gi|54397639|gb|AAV33691.1| Hcr9-OR2C [Lycopersicon pimpinellifolium] (evalue: 7e-36, score=153)">
      <seq>tcattgtacagatcgtatgaggattctgtgagtttggtgatcaaagnccaggacattgagctagaaagaatcagcacaattatgacaaccatagacctctcgagcaaccattttgaaggtgtcattccaaaaacactaaaggatctcagctcactttggctactcaatttatcccataacaatctcatcggtcatattccaatggaattggggcaattgaataagcttgaagcgttatatctctcctggaatcggctcacaggaaagattccaagggaattgataacaatgaagtttctagcagtcttaaacctctctcagaatcttcttattggatcgattcctcaaggtctacaattcaacacatttgaaaatgactcgtatggcggtaaccttgatctatgtggtcctcctttgtcaaagcaatgtggaacgagtgattcatcccatgttcctcaaccattggagtctgaagacgagtcatatttttttagtggatttacgtgggaatcagtagtcataggctacagctttggactagttgttggaactgttgtgtggagcctcgtgtttaaataccgtaagccagaatggtttgtcgaattttttgaaggcatttatcccaagaaaatgagaaggtcaatgaagagagctcggagacgacggacttaatggaagaatgtaagagtgaacttttctgtttttttagttatatttttgttgtttgtatatatgcttgataacaattaattgcatgtgttatattgtgaatttccactgaattaaaataagtgttcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="56048" stop="57447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56348" g_stop="57146" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="812"/>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U332849" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56348" e_stop="57146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGTACAGATCGTATGAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATCGGTCATATTCCAATGGAATTGGGGCAATTGAATAAGCTTGAAGCGTTATATCTCTCCTGGAATCGGCTCACAGGAAAGATTCCAAGGGAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGCGGTAACCTTGATCTATGTGGTCCTCCTTTGTCAAAGCAATGTGGAACGAGTGATTCATCCCATGTTCCTCAACCATTGGAGTCTGAAGACGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGAGCCTCGTGTTTAAATACCGTAAGCCAGAATGGTTTGTCGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCGGAGACGACGGACTTAATGGAAGAATGTAAGAGTGAACTTTTCTG-TTTTTTAGTTATATTTTTGTTGTTTGTATATATGCTTGATAACAATTAATTGCATGTGTTATATTGTGAATTTCCACTGAATTAAAATAAGTGTTCTTG</genome_strand>
        <mrna_strand>TCATTGTACAGATCGTATGAGGATTCTGTGAGTTTGGTGATCAAAGNCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATCGGTCATATTCCAATGGAATTGGGGCAATTGAATAAGCTTGAAGCGTTATATCTCTCCTGGAATCGGCTCACAGGAAAGATTCCAAGGGAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGCGGTAACCTTGATCTATGTGGTCCTCCTTTGTCAAAGCAATGTGGAACGAGTGATTCATCCCATGTTCCTCAACCATTGGAGTCTGAAGACGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGAGCCTCGTGTTTAAATACCGTAAGCCAGAATGGTTTGTCGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCGGAGACGACGGACTTAATGGAAGAATGTAAGAGTGAACTTTTCTGTTTTTTTAGTTATATTTTTGTTGTTTGTATATATGCTTGATAACAATTAATTGCATGTGTTATATTGTGAATTTCCACTGAATTAAAATAAGTGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316864" ref_strand="+" ref_description="SGN-U316864        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | (1-4)-beta-mannan endohydrolase, putative, similar to (1-4)-beta-mannan endohydrolase (Coffea arabica) GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5) | chr5:26555621-26558262 REVERSE | Aliases: K1F13.12, K1F13_12(evalue: 8e-32, score=133) genbank/nr: gi|10180974|gb|AAG14352.1| endo-beta-mannanase [Lycopersicon esculentum](evalue: 2e-78, score=293)">
      <seq>ttcattagtaaccatcttatcaatgaaattgattttgctacaatccatgcatacactgatcaatggttatctggacaaagtgatgaagcacaattggcgtggatggaaaagtggataagaagtcattgggaagatgcaagaaatatattgaagaaacctttagtgcttgctgaatttggaaagtctagtagatcaggtgaaggatcaagagatatatttatgagtagtgtgtatagaaatgtgtataatttggcaaaagaaggtggaacaatgggaggaagtttagtatggcaactaatggcacatggaatggagaattatgatgatggttattctattgttttgggactaaatccttcaactacacaaattatctcaaaccaagctcatatcatgactgctttggctcattctctcaatcatgagtgaagacatcataataatcaatttataatctatcatttttagtattattaatttgagatgatattaccaaacatgttcaagttgattaaacacaagaatgtaattgaataaattgttttagtaaaaaggaaagttatgttataaaaaaaaaaaaaaaaaaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="58134" stop="56884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57834" g_stop="57770" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57769" i_stop="57688" i_length="82">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57687" g_stop="57189" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="563" r_length="498" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="589"/>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U316864" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57834" e_stop="57770"/>
          <exon e_start="57687" e_stop="57189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAGTAACCATTTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATGGTATGTAGTATTTTATATGATCTTTCAGATCTGTACGTACATTTTTATAAGTTTAAATATTTATTTATATCGATGGTTATAGATTATCTGGACAAAGTGATGAAGCACAATTGGTGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATTCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTAT</genome_strand>
        <mrna_strand>TTCATTAGTAACCATCTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG..................................................................................GTTATCTGGACAAAGTGATGAAGCACAATTGGCGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTATAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAA-TCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344690" ref_strand="+" ref_description="SGN-U344690        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:19711729-19712991 FORWARD | Aliases: F14G24.18, F14G24_18(evalue: 4e-29, score=125) genbank/nr: gi|46092516|dbj|BAD14378.1| hypothetical protein [Solanum melongena] (evalue: 2e-34, score=149)">
      <seq>tggcgagtcgttgcttctgttttggaaaacctttgagccccggtggttcaaggggctgtgctgttctgttattcgtcatgtgttgggttacatttttcatcgcggaggtgtgtttgttggctggttcagttaggaacgcgtatcataccaagtatagatcatcgctcttgtttaatgatcgacctgtatcttgtgagactgtgagaaaaggcgtttttgctgctggagccgcgtttattttcttcactagcataatcaataagttttactttatcagttactccaacgctaagagtggagctggaccatatggtggagaagctggtgtgggaatggcagcctacaaatgaatatgatcaatcatgaagntctatatgtataataatttttcagtttttagttgtacttgacttcataatttggtacttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="70453" stop="69338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70153" g_stop="70069" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70068" i_stop="69990" i_length="79">
            <donor d_prob="0.622" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69989" g_stop="69638" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="437" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U344690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70153" e_stop="70069"/>
          <exon e_start="69989" e_stop="69638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAGTCGTTGCTTCTGTTTTGGAAAACCTTTGAGCCCCGGTGGTTCAAGGGGCTGTGCTGTTCTGTTATTCGTCATGTGTTGGTATTTGACTTACCACAATATAATTTTTTTCAGACTCAATATAATGTGATAATAATTAAGTTGTTAACCTATGTTTTAGGGTTACATTTTTCATCGCGGAGGTGTGTTTGTTGGCTGGTTCAGTTAGGAACGCGTATCATACCAAGTATAGATCATCGCTCTTGTTTAATGATCGACCTGTATCTTGTGAGACTGTGAGAAAAGGCGTTTTTGCTGCTGGAGCCGCGTTTATTTTCTTCACTAGCATAATCAATAAGTTTTACTTTATCAGTTACTCCAACGCTAAGAGTGGAGCTGGACCATATGGTGGAGAAGCTGGTGTGGGAATGGCAGCCTACAAATGAATATGATCAATCATGAAGTTCTATATGTATAATAATTTTTCAGTTTTTAGTTGTACTTGACTTCATAATTTGGTACTTTTTTTTTTT</genome_strand>
        <mrna_strand>TGGCGAGTCGTTGCTTCTGTTTTGGAAAACCTTTGAGCCCCGGTGGTTCAAGGGGCTGTGCTGTTCTGTTATTCGTCATGTGTTG...............................................................................GGTTACATTTTTCATCGCGGAGGTGTGTTTGTTGGCTGGTTCAGTTAGGAACGCGTATCATACCAAGTATAGATCATCGCTCTTGTTTAATGATCGACCTGTATCTTGTGAGACTGTGAGAAAAGGCGTTTTTGCTGCTGGAGCCGCGTTTATTTTCTTCACTAGCATAATCAATAAGTTTTACTTTATCAGTTACTCCAACGCTAAGAGTGGAGCTGGACCATATGGTGGAGAAGCTGGTGTGGGAATGGCAGCCTACAAATGAATATGATCAATCATGAAGNTCTATATGTATAATAATTTTTCAGTTTTTAGTTGTACTTGACTTCATAATTTGGTACTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317043" ref_strand="+" ref_description="SGN-U317043        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC072 | no apical meristem (NAM) family protein (RD26), contains Pfam PF02365: No apical meristem (NAM) domain; Arabidopsis thaliana nap gene,PID:e1234813; identical to cDNA RD26 mRNA for NAM-like protein GI:15375403 | chr4:13707246-13709128 REVERSE | Aliases: ANAC072(evalue: 4e-99, score=358) genbank/nr: gi|6175246|gb|AAF04915.1| jasmonic acid 2 [Lycopersicon esculentum](evalue: 0, score=659)">
      <seq>aaattttgaaaaaaaataatattttttttatgaaaaaaaaagaagttttttattaattaaaaaaaaaattatgggtgttcaagaaaaagatccacttttgcaattaagtttaccaccaggatttagattttatccaactgatgaagagcttttagttcaatatttatgtaagaaagttgctggacatgattttcctctacaaattattggtgaaattgatttatacaaatttgatccttgggttttacctagtaaggcgacatttggtgaaaaagaatggtatttcttcagtccgagggataggaagtatccgaatggatctagaccgaatcgagtagcaggttcgggttattggaaagcaacggggacggataaggtgataacttcgcaaggaagaaaagttggaattaagaaagctcttgtgttttatgtgggtaaagctccaaaaggatccaagacgaattggattatgcatgaatatagactttttgaatcttcaaggaaaaataatggaagttcaaagctagatgaatgggtgctttgtcgaatttataagaagaattcaagtggaccaaaacctctgatgtctggtttacacagcagtaatgaatacagccatggttcgtcgacttcgtcatcatcccaattcgatgatatgctcgaatcattaccagaaatggacgatcgattctccaatttaccgaggttgaactctctcaaggccgagaaattcaacctcgatcgtctggattcagccaatttcgattgggcaattctcgctgggctcaaaccaatgccggaattgggcccagcaaatcaagctccaggcgttcagggtcaggctcaggggcatgtcaataaccacattcacagcgacaacaacaatatgaattttctcaacgatgtttacgcccatcctccaaatttccgaggcaacacaaaggttgaaagtattaatctagacgaagaagttgaaagcgggaaaagaaatcaacggattgaccaatcgagttacttccaacagagtctcaatggattttcccaagcgtatacaaacaatgtggatcaattcgggatccaatgtccgaatcagacgttaaatctcgggttcaagcagtagaggatactggaaagtaagaaaagttgtagctcgaaatctgaatgccagtatactgtgtatatatacagaaggcctggatttagatttccttggcccaacggattcgaagaaagagcaagtacagtatcatgccaaggaaattaagtccttcgagggcacgtctgggcagacgtcgtggacgttatttgcaagttcttgcaattgtgtctgaagtcattaggctgagtggcacttcttatttgcaagttgtgtttgaagtcattaggccgaaggcacgtctgcgtggacgataaaataatgtacacaaacaggagatatatgcaggggcgtgtatattcttttaggaaactgggcttttagtttgttttattttatgatacatttccagatttggatgtattttgtaatttttacatttctgtgtagcaagttagaagatatatagaaagatacttttaaaatactttttataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76056" stop="123528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76356" g_stop="76606" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76607" i_stop="77402" i_length="796">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77403" g_stop="77674" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="523" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77675" i_stop="78455" i_length="781">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78456" g_stop="79542" g_length="1087"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="1610" r_length="1087" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U317043" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76356" e_stop="76606"/>
          <exon e_start="77403" e_stop="77674"/>
          <exon e_start="78456" e_stop="79542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGAAAAAAAATAATATTTTTTTTATGAAAAAAAAAGAAGTTTTTTATTAATTAAAAAAAAAATTATGGGTGTTCAAGAAAAAGATCCACTTTTGCAATTAAGTTTACCACCAGGATTTAGATTTTATCCAACTGATGAAGAGCTTTTAGTTCAATATTTATGTAAGAAAGTTGCTGGACATGATTTTCCTCTACAAATTATTGGTGAAATTGATTTATACAAATTTGATCCTTGGGTTTTACCTAGTAAGTTTCTAGTTTTATACAATCTTTTGTTTTTATTTTTTTCACTTACTCTCTCGAATTTGAGACCTCTGGATTAAGAATAAATGAAATTATATTCATTTCATAGTTTAATTAAAGTTTTGGTCCTATTGTTTTAGTTTTAATGGATGGATTCATGATTAAAGTCAATTTATATCTAAAATATAGAATTGAGTTTTAGTTATTTTGAATTGATTAATTAAAAAAAAATTGTTGTATGATAATAAAATGATGATTTATGTATTGGAATTTTGAATGAGGGAGGAAAACAAAAAAAACAACTTTTGAAACTTATATAAGTTTTAAGTAAGATTTGAAAGTTTGTCATTTAGACATTACAAGAAAATTTAATGTATTGTTTTGGATTAAATTTTAACTTAAATTATTTTTAATTACTGAAATGATGCAGGTGAAATATAAGTTAAATTATTTTTGATCATTAAAATGATGCAGGTTAAATGATATTATACTATTGGTACTTTTGAACTCGAGAGCTTAAATTTAAGTTAAATTACTTTCTTATTACTGAGACGACGCAATTTAAATTAAAATATTTTTTATTATTAAAATGTTGCAGGTCAAATGATATTGTACTATTTGATACTTTTGGATTTGATAGGCCAAATTTAAGTTAAATTATTTTTCGATTACTGAAATGATGCAAGTTAAATTTAAGTTAAATTATTTTCAATCACTGAAATGATGCAGGTCAAATGATATTGTACTATTGATATTTTGAATTCGATAAATGATGGATAATGTGTTACCTTTTGCATAGGTAAGGCGACATTTGGTGAAAAAGAATGGTATTTCTTCAGTCCGAGGGATAGGAAGTATCCGAATGGATCTAGACCGAATCGAGTAGCAGGTTCGGGTTATTGGAAAGCAACGGGGACGGATAAGGTGATAACTTCGCAAGGAAGAAAAGTTGGAATTAAGAAAGCTCTTGTGTTTTATGTGGGTAAAGCTCCAAAAGGATCCAAGACGAATTGGATTATGCATGAATATAGACTTTTTGAATCTTCAAGGAAAAATAATGGAAGTTCAAAGGTAATTTCATTGAAATATTATTCTCTCTATATTTTTGTTTTTGGATGAATATTTGCACTTTTAGTCCCTCAATTTCCATAAATTTATGCATTTAGTCCTTGATTAATTGAAATGTGTATTTAATTACCAAGTCCTTCCGTTGAGAGTATTTTATCCTTAACAAAAAAATTATGTTTGAGCTCCGAGTACAGAGAAATTCTGTCAGGAATGAGCCTTGTAGTGCGCAATTGGGATATTGTGAGTATCGGGGATTCAGAAATAATAAGCCCTATGTTTTTAAGCGTGTCAAAGATGTTCCACCACGAACTTTTTATCGTTCTATTAATGAATCGATTTAATTTTCCAGCTCAGTCAAGCAATGTTACATAAATTAGGAATTACTACTTATATTTTGAAGATGTTCCACTCCGAACTTTTTATTGTTTTATTAATGAATCGATTTAATTTTCCAGCTCGGTCAATCAATGTCACATAAATTAGAAATTACTACTATATTTTGTTATAATAGTTATACTATATGATGAATTTGTATTTGGTGTGCTCCATATGTTGATGGTAATGTGCTTTATCAACAGCCTGTTCTTTTGTATATAGAGAGACCAAAGAGCGTACATTTTAGTGATTGGAGGTCAAAATGTGCTATAGTTAAATAGTATAAGGGCTAAAGTCTAAATTGTCAATAACTGGAGGAGTAAATGTGCAATTATATTCCATTTTCAAATGTGTAATTGTTGCATTTCTTAATGTGTATCTAATTTTTCGTCATTTTTGTACATTTCAGCTAGATGAATGGGTGCTTTGTCGAATTTATAAGAAGAATTCAAGTGGACCAAAACCTCTGATGTCTGGTTTACACAGCAGTAATGAATACAGCCATGGTTCGTCGACTTCGTCATCATCCCAATTCGATGATATGCTCGAATCATTACCAGAAATGGACGATCGATTCTCCAATTTACCGAGGTTGAACTCTCTCAAGGCCGAGAAATTCAACCTCGATCGTCTGGATTCAGCCAATTTCGATTGGGCAATTCTCGCTGGGCTCAAACCAATGCCGGAATTGGGCCCAGCAAATCAAGCTCCAGGCGTTCAGGGTCAGGCTCAGGGGCATGTCAATAACCACATTCACAGCGACAACAACAATATGAATTTTCTCAACGATGTTTACGCCCATCCTCCAAATTTCCGAGGCAACACAAAGGTTGAAAGTATTAATCTAGACGAAGAAGTTGAAAGCGGGAAAAGAAATCAACGGATTGACCAATCGAGTTACTTCCAACAGAGTCTCAATGGATTTTCCCAAGCGTATACAAACAATGTGGATCAATTCGGGATCCAATGTCCGAATCAGACGTTAAATCTCGGGTTCAAGCAGTAGAGGATACTGGAAAGTAAGAAAAGTTGTAGCTCGAAATCTGAATGCCAGTATACTGTGTATATATACAGAAGGCCTGGATTTAGATTTCCTTGGCCCAACGGATTCGAAGAAAGAGCAAGTACAGTATCATGCCAAGGAAATTAAGTCCTTCGAGGGCACGTCTGGGCAGACGTCGTGGACGTTATTTGCAAGTTCTTGCAATTGTGTCTGAAGTCATTAGGCTGAGTGGCACTTCTTATTTGCAAGTTGTGTTTGAAGTCATTAGGCCGAAGGCACGTCTGCGTGGACGATAAAATAATGTACACAAACAGGAGATATATGCAGGGGCGTGTATATTCTTTTAGGAAACTGGGCTTTTAGTTTGTTTTATTTTATGATACATTTCCAGATTTGGATGTATTTTGTAATTTTTACATTTCTGTGTAGCAAGTTAGAAGATATATAGAAAGATACTTTTAAAATACTTTTTATAATTTGTCATTTTAATTAA</genome_strand>
        <mrna_strand>AAATTTTGAAAAAAAATAATATTTTTTTTATGAAAAAAAAAGAAGTTTTTTATTAATTAAAAAAAAAATTATGGGTGTTCAAGAAAAAGATCCACTTTTGCAATTAAGTTTACCACCAGGATTTAGATTTTATCCAACTGATGAAGAGCTTTTAGTTCAATATTTATGTAAGAAAGTTGCTGGACATGATTTTCCTCTACAAATTATTGGTGAAATTGATTTATACAAATTTGATCCTTGGGTTTTACCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGCGACATTTGGTGAAAAAGAATGGTATTTCTTCAGTCCGAGGGATAGGAAGTATCCGAATGGATCTAGACCGAATCGAGTAGCAGGTTCGGGTTATTGGAAAGCAACGGGGACGGATAAGGTGATAACTTCGCAAGGAAGAAAAGTTGGAATTAAGAAAGCTCTTGTGTTTTATGTGGGTAAAGCTCCAAAAGGATCCAAGACGAATTGGATTATGCATGAATATAGACTTTTTGAATCTTCAAGGAAAAATAATGGAAGTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATGAATGGGTGCTTTGTCGAATTTATAAGAAGAATTCAAGTGGACCAAAACCTCTGATGTCTGGTTTACACAGCAGTAATGAATACAGCCATGGTTCGTCGACTTCGTCATCATCCCAATTCGATGATATGCTCGAATCATTACCAGAAATGGACGATCGATTCTCCAATTTACCGAGGTTGAACTCTCTCAAGGCCGAGAAATTCAACCTCGATCGTCTGGATTCAGCCAATTTCGATTGGGCAATTCTCGCTGGGCTCAAACCAATGCCGGAATTGGGCCCAGCAAATCAAGCTCCAGGCGTTCAGGGTCAGGCTCAGGGGCATGTCAATAACCACATTCACAGCGACAACAACAATATGAATTTTCTCAACGATGTTTACGCCCATCCTCCAAATTTCCGAGGCAACACAAAGGTTGAAAGTATTAATCTAGACGAAGAAGTTGAAAGCGGGAAAAGAAATCAACGGATTGACCAATCGAGTTACTTCCAACAGAGTCTCAATGGATTTTCCCAAGCGTATACAAACAATGTGGATCAATTCGGGATCCAATGTCCGAATCAGACGTTAAATCTCGGGTTCAAGCAGTAGAGGATACTGGAAAGTAAGAAAAGTTGTAGCTCGAAATCTGAATGCCAGTATACTGTGTATATATACAGAAGGCCTGGATTTAGATTTCCTTGGCCCAACGGATTCGAAGAAAGAGCAAGTACAGTATCATGCCAAGGAAATTAAGTCCTTCGAGGGCACGTCTGGGCAGACGTCGTGGACGTTATTTGCAAGTTCTTGCAATTGTGTCTGAAGTCATTAGGCTGAGTGGCACTTCTTATTTGCAAGTTGTGTTTGAAGTCATTAGGCCGAAGGCACGTCTGCGTGGACGATAAAATAATGTACACAAACAGGAGATATATGCAGGGGCGTGTATATTCTTTTAGGAAACTGGGCTTTTAGTTTGTTTTATTTTATGATACATTTCCAGATTTGGATGTATTTTGTAATTTTTACATTTCTGTGTAGCAAGTTAGAAGATATATAGAAAGATACTTTTAAAATACTTTTTATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83285" stop="84533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83585" g_stop="84233" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83585" e_stop="84233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACGAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83944" stop="85351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84244" g_stop="85051" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84244" e_stop="85051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGACAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGACATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGTCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342544" ref_strand="+" ref_description="SGN-U342544        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding protein, similar to AR781 GI:1669593 from (Arabidopsis thaliana); AR781 complements pheromone receptor deficient mutant of Shizosaccharomyces pombe | chr2:6872692-6873959 REVERSE | Aliases: F9O13.1(evalue: 4e-14, score=75.9) genbank/nr: conserved(evalue: 2e-18, score=96.7)">
      <seq>actacaaaaaaaataaaaatgacagatttcaacttcgacagtacttgtacttctccatatataagtgcaccttcaagtcctcaacattttggtacaacattcttttttagtgctcctactagccctactcgtatctccgctcttcacagcgaatctaacgttgctgatcatgatcatgataacgataatgatgattttgcttttgaatttagcggatatgaaataatggagaaaagtacaatagcagctgacgagttatttgatggcgggaaaatcaaattaaagcaagtaatggtacctattgattcgccgaaaatgaaaaaaaacgacaaagatagtgtaaattctgaaccaaattcttctatgagagtatcgggtgttttgttaatcaatgaaaatgcggagaaaacagagtcctctgtttcgtcgttatggaaaagaagatggaaattgaaagatttattgttgtttagaagtgcttctgagagtcgagctagtagtaatacgatagagatgagtaagtatgcgttggtgaagaaagttcgtgaagaggaggggtcgagctcgagcttgaggataaggaagatggaatcgaattcggctcatgaattgcattataagatgaagaaggaggtgttgaaagatatgaagaagaaaacatttttaccatataagcaaagtgttcttagttggcatggttgttatggtcttgatgaaacaattacaatgtatatttctcctcgttcgtagtttattgtatgattattatcatgtttgattgtatatttatttgatattatacatttcgcttccgtgcaggatttgaacttgatgagtttaatttctgaatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="89014" stop="87561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88714" g_stop="87861" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U342544" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88714" e_stop="87861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAAAAAAAATAAAAATGACAGATTTCAACTTCGACAGTACTTGTACTTCTCCATATATAAGTGCACCTTCAAGTCCTCAACATTTTGGTACAACATTCTTTTTTAGTGCTCCTACTAGCCCTACTCGTATCTCCGCTCTTCACAGCGAATCTAACGTTGCTGATCATGATCATGATAACGATAATGATGATTTTGCTTTTGAATTTAGCGGATATGAAATAATGGAGAAAAGTACAATAGCAGCTGACGAGTTATTTGATGGCGGGAAAATCAAATTAAAGCAAGTAATGGTACCTATTGATTCGCCGAAAATGAAAAAAAACGACAAAGATAGTGTAAATTCTGAACCAAATTCTTCTATGAGAGTATCGGGTGTTTTGTTAATCAATGAAAATGCGGAGAAAACAGAGTCCTCTGTTTCGTCGTTATGGAAAAGAAGATGGAAATTGAAAGATTTATTGTTGTTTAGAAGTGCTTCTGAGAGTCGAGCTAGTAGTAATACGATAGAGATGAGTAAGTATGCGTTGGTGAAGAAAGTTCGTGAAGAGGAGGGGTCGAGCTCGAGCTTGAGGATAAGGAAGATGGAATCGAATTCGGCTCATGAATTGCATTATAAGATGAAGAAGGAGGTGTTGAAAGATATGAAGAAGAAAACATTTTTACCATATAAGCAAAGTGTTCTTAGTTGGCATGGTTGTTATGGTCTTGATGATACAATTACAATGTATATTTCTCCTCGTTCGTAGTTTATTGTATGATTATTATCATGTTTGATTGTATATTTATTTGATATTATACATTTCGCTTCCGTGCAGGATTTGAACTTGATGAGTTTAATTTCTGAATTTAA</genome_strand>
        <mrna_strand>ACTACAAAAAAAATAAAAATGACAGATTTCAACTTCGACAGTACTTGTACTTCTCCATATATAAGTGCACCTTCAAGTCCTCAACATTTTGGTACAACATTCTTTTTTAGTGCTCCTACTAGCCCTACTCGTATCTCCGCTCTTCACAGCGAATCTAACGTTGCTGATCATGATCATGATAACGATAATGATGATTTTGCTTTTGAATTTAGCGGATATGAAATAATGGAGAAAAGTACAATAGCAGCTGACGAGTTATTTGATGGCGGGAAAATCAAATTAAAGCAAGTAATGGTACCTATTGATTCGCCGAAAATGAAAAAAAACGACAAAGATAGTGTAAATTCTGAACCAAATTCTTCTATGAGAGTATCGGGTGTTTTGTTAATCAATGAAAATGCGGAGAAAACAGAGTCCTCTGTTTCGTCGTTATGGAAAAGAAGATGGAAATTGAAAGATTTATTGTTGTTTAGAAGTGCTTCTGAGAGTCGAGCTAGTAGTAATACGATAGAGATGAGTAAGTATGCGTTGGTGAAGAAAGTTCGTGAAGAGGAGGGGTCGAGCTCGAGCTTGAGGATAAGGAAGATGGAATCGAATTCGGCTCATGAATTGCATTATAAGATGAAGAAGGAGGTGTTGAAAGATATGAAGAAGAAAACATTTTTACCATATAAGCAAAGTGTTCTTAGTTGGCATGGTTGTTATGGTCTTGATGAAACAATTACAATGTATATTTCTCCTCGTTCGTAGTTTATTGTATGATTATTATCATGTTTGATTGTATATTTATTTGATATTATACATTTCGCTTCCGTGCAGGATTTGAACTTGATGAGTTTAATTTCTGAATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336534" ref_strand="+" ref_description="SGN-U336534        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase, cyclophylin-type; identical to SP:P82869 Thylakoid lumenal 38 kDa protein, chloroplast precursor (P38) {Arabidopsis thaliana} | chr3:5248936-5252439 REVERSE | Aliases: MJK13.18(evalue: 1e-56, score=145) genbank/nr: gi|50938427|ref|XP_478741.1| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa (japonica cultivar-group)] >gi|33146755|dbj|BAC79666.1| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa (japonica cultivar-group)] >gi|50508305|dbj|BAD30114.1| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa (japonica cultivar-group)] (evalue: 8e-63, score=160)">
      <seq>ttgttactttacaatattgttttgctgcagaatttgtgaaatcttatgcacttgtgatagtaacattgccggtttgcatgatcgtattccagtaatactctttatcatgcttgaatgtctgatatggtgtcaacgaaaccagtgaggatctcaaggattgatgttttcacagacttcttaaatttcttaagcaatcatctgaacagatgatatctttaaacacaaaccttactgcaatcaagatgaatttctttttatcttgtcagggtggattacagaaacttctacagtacataaaggataaagatccagataaagtatccgtttgtcttgcatctacattggatactattgcacagatggagttgttacaggccccaggcttatcatttttgttgcctcagcagtacgtgaaatacccaaggctcacagggagaggaatagttgaatttacagttgagaaagtagatggttcagcattttctcctgaatctgcaggtgaagccaaaagcactgcaaaaattcaggttgttatagatgggttttcagcaccactgactgcaggaaacttcgcaaactggtggtagatggggcatatgatgggatgaagctgacttgtgcaaaccaagcaattctttcggacagcgaggtgggaaagaccacaggatacagtgttccattggaaatcaagccagccggacaatttgagcctctttacagaacaacattaagcattcnagatggggagctgcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="135505" stop="132188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135205" g_stop="134832" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134831" i_stop="134535" i_length="297">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134534" g_stop="134485" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="424" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134484" i_stop="134132" i_length="353">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134131" g_stop="134029" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="527" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134028" i_stop="133409" i_length="620">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133408" g_stop="133355" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="580" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="133354" i_stop="132649" i_length="706">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132648" g_stop="132490" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="739" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="132489" i_stop="132397" i_length="93">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="132396" g_stop="132380" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="756" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U336534" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135205" e_stop="134832"/>
          <exon e_start="134534" e_stop="134485"/>
          <exon e_start="134131" e_stop="134029"/>
          <exon e_start="133408" e_stop="133355"/>
          <exon e_start="132648" e_stop="132490"/>
          <exon e_start="132396" e_stop="132380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACTTTACAATATTGTTTTGCTGCAGAATTTGTGAAATCTTATGCACTTGTGATAGTAACATTGCCGGTTTGCATGATCGTATTCCAGTAATACTCTTTATCATGCTTGAATGTCTGATATGGTGTCAACGAAACCAGTGAGGATCTCAAGGATTGATGTTTTCACAGACTTCTTAAATTTCTTAAGCAATCATCTGAACAGATGATATCTTTAAACACAAACCTTACTGCAATCAAGATGAATTTCTTTTTATCTTGTCAGGGTGGATTACAGAAACTTCTACAGTACATAAAGGATAAAGATCCAGATAAAGTATCCGTTTGTCTTGCATCTACATTGGATACTATTGCACAGATGGAGTTGTTACAGGTATTTATGAACTCCTTTGTACATTCTTTAGTGGTGTAAAGGGGAAAATCGGTAATGGAAAGAACAGTTACTGTGTTTGAATAGTTCAGAAGAAAAAAAAATGTACTAAGGTTCAACTTGTGCCCTTAGGAAGTGATACTGTTCTTTGAAGAATATAACAAAGGATAAAGCTTAAACGCAAAGAGTTCAAGTCTCTCATGCATTACGATTTTCACAATTATACATTCTCCAATAACATTTTCCATGTAAAGTTTTTAATGTAGTTAACAATATCTCAACGACATTATCTCTCTACAGGCCCCAGGCTTATCATTTTTGTTGCCTCAGCAGTACGTGAAATACCCAAGGTAAGGGCTGTCATTATTTCTCTTCTTAATATGGCATTTCTACTGATTGAAAAGCGAGTTGCTTAATGACAACCATGTACGTACATCGATTATCAAATCCGAGGACGATTACATCTTGCATATTAAATGTGCCGTTTTGATACTTATGGTGCCTTTGTATATCCAAATGTTCAGATCATGGTTTCTTATCACTTCATAAGCAGCATTGTTGCATAGCTATGTAGATAAATTTGAGTTGAGCTGTTCTTTTTAAGCACCCTGTGTTCACGTTACAACAACCATGTTAAAATAACTACTCAATGATTTCTTTGAGGAAGATGGGGTGTGTTATATTCTTCTACTAAATTCGTCAGGCTCACAGGGAGAGGAATAGTTGAATTTACAGTTGAGAAAGTAGATGGTTCAGCATTTTCTCCTGAATCTGCAGGTGAAGCCAAAAGCACTGCAAAAATTCAGGTATGTTAAATCCTTTATTCGAGAGTCAGTAAAAATATCTTGCACTGCCCATTTCTTTGTTTGATCCTTTGTTCTAAACTTGATGATTAAGCATCAATCGAGACCTTTAAGTTAAGAGACTGTTCCTTCTGGGAAGTTATTTGCTAATATGACTTGAATCTGTCATTTGTTTGTTTCTGTGATGGTCATCATCTCATGCAATAGCTTCATCGTTGAGACACTAGTGCAATTTAATCAAATCCCGAAATGGCTGTACTGTCTCTTTCTCTTTCTTTGAACCACCTGTCCTATATTGTGCATTGAGATAGAAGTGTGTTGCTTTTGTATGATGAAGTATTCCCCAATTAAACATTTGCTTCGTCTTTTCTGAGGGAGTTACAATTTCTGTCGTATAATAGAGCCTGCACTAGAAGAGTTTTTAATGTTATACTATTATAACTTCTAATATTCTCTCCTATGTGGTTTGCGAGCTATTGCAAAGGAGCGGGGGTTTTACCTTGTGCGCACCCAAAGGGTAGCCGCGGCGGGTTTCCCTTGTCATAAAAAAAAACGTCTAATATTCTTCAGATAGATATTTCGTCTAACACAAAAGTATTAAACTGTATAATGACATGATGCAGGTTGTTATAGATGGGTTTTCAGCACCACTGACTGCAGGAAACTTCGCAAAACTGGTAAGGTAGTGAAATCTCACATCATCCTTGTAAGTACTCATTATGCAACAAAAACAATAACTATGCCTCAATCCCAAACTAGTTAGGATTGGCCATATGATCCTTGATATAATTGTCGTCCATTTTGGGCCCTCTTCATTGTAATATCAGTAATTAAGAAATGAACTTTGTATCTAACTCAACTACAAAGGCTAGGGCATGAAGTAAGGATTTTCCATGACCATATAAGGAGGAAAACAACTCAATCACACACTGATGTGGGAGTCTTAACAACTTTCAATAATTTCTCCTTTCTTTCCCCTTTGAGGATGACTTTCTACTTCCGTTTGACAAATTGATCAGACTTCAGATATTTCTTCACATGAAGCATGTTCGACACCTAAAGGTGGCTTTTTATTCTTTCATTTCCCACATCTTTTTTGCTGGGCCCTGATAACTACTTGAAGAGTATGTATAGTTTTCTTTCCGTAGCTCTAGATTATTAACTTGCCACTGTGCTAAAATATGGAAAACCATCATCTTGATGTCTTAAGGAGTAATGTTTACACAATGAGAGCATGGGAAATAATTTATGAATTTCTTGATTATGGTATCCTTGCTGACCAAAGATGAGTACAACTAGCGGTCTCTGATGTTTCGAGCAAGGATTTCAGTATGATCTAATTCAGACATTTCTATATTGTAAAACAAATCTATAATTCTTTAGGTGGTAGATGGGGCATATGATGGGATGAAGCTGACTTGTGCAAACCAAGCAATTCTTTCGGACAGCGAGGTGGGAAAGACCACAGGATACAGTGTTCCATTGGAAATCAAGCCAGCCGGACAATTTGAGCCTCTTTACAGAACAACATTAAGCATTCAGGTACCCACATGTTTCATGGATAATAACAGACTGATCTTTGGCGTTTATATCTTTTGTGCTTGTGCTTATGGTTTATTCCTTTCGTTACGGAAGGATGGGGAGCTGCCTGT</genome_strand>
        <mrna_strand>TTGTTACTTTACAATATTGTTTTGCTGCAGAATTTGTGAAATCTTATGCACTTGTGATAGTAACATTGCCGGTTTGCATGATCGTATTCCAGTAATACTCTTTATCATGCTTGAATGTCTGATATGGTGTCAACGAAACCAGTGAGGATCTCAAGGATTGATGTTTTCACAGACTTCTTAAATTTCTTAAGCAATCATCTGAACAGATGATATCTTTAAACACAAACCTTACTGCAATCAAGATGAATTTCTTTTTATCTTGTCAGGGTGGATTACAGAAACTTCTACAGTACATAAAGGATAAAGATCCAGATAAAGTATCCGTTTGTCTTGCATCTACATTGGATACTATTGCACAGATGGAGTTGTTACAG.........................................................................................................................................................................................................................................................................................................GCCCCAGGCTTATCATTTTTGTTGCCTCAGCAGTACGTGAAATACCCAAG.................................................................................................................................................................................................................................................................................................................................................................GCTCACAGGGAGAGGAATAGTTGAATTTACAGTTGAGAAAGTAGATGGTTCAGCATTTTCTCCTGAATCTGCAGGTGAAGCCAAAAGCACTGCAAAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTATAGATGGGTTTTCAGCACCACTGACTGCAGGAAACTTCGC-AAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAGATGGGGCATATGATGGGATGAAGCTGACTTGTGCAAACCAAGCAATTCTTTCGGACAGCGAGGTGGGAAAGACCACAGGATACAGTGTTCCATTGGAAATCAAGCCAGCCGGACAATTTGAGCCTCTTTACAGAACAACATTAAGCATTCNA.............................................................................................GATGGGGAGCTGCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="-" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="146156" stop="145104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145856" g_stop="145417" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145856" e_stop="145417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAAGTAGTTTAAATTTTTTTCTTTAAACTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATA--ATTTTAAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTTCGTTAAATGAAGAGTATATGTGAGCCATTTTGTAACGGCAAGGGTATATGTGAGCCGTTTGTATAACGGTAAAGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATAAGACCCTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACAC-AAAAAAAA-TATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336535" ref_strand="+" ref_description="SGN-U336535        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase, cyclophylin-type; identical to SP:P82869 Thylakoid lumenal 38 kDa protein, chloroplast precursor (P38) {Arabidopsis thaliana} | chr3:5248936-5252439 REVERSE | Aliases: MJK13.18(evalue: 4e-28, score=122) genbank/nr: gi|42564190|ref|NP_188171.2| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (evalue: 3e-26, score=122)">
      <seq>agagagagagagaggccagaaagaaaaaaagaggagagagagagaaccccacaactcggtggcaatggctgcccacctatccacgaccattatctccccaaatctcactcatttggaccaaaataaagctttcttccagagccatcttccacttcggtccccaatttatgctacactcaatcgcattgccttgaagaagaatgcttccatggaattgacaaagaggctgactgctccttccattttgtcaacatatttggagagtacagtcaagcaatttcagagtttaatggcggcgatcattatatttactgaaattgcatctccaatacctttgcatggtttgcaagatttgtccatttcccctgccgaggcagtgctttattcccccgaaacaaaaacgctccctagaacaggagaattagctcttagaagagctatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0161H10-XSu8R/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0161H10.1" temp_strand="+" temp_description="C12HBa0161H10.1  AC216365.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0161H10 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="157633" stop="159836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157856" g_stop="158066" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="158067" i_stop="159302" i_length="1236">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="159303" g_stop="159536" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="445" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0161H10.1" gen_strand="+" ref_id="SGN-U336535" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0161H10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157856" e_stop="158066"/>
          <exon e_start="159303" e_stop="159536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGATAGGCTAGAAAGATAAAAAGAGGATAGAGATAGAACCTTACAACTCTGTTTCAATGGCTTCCCCTTTATCCTCTTCCATTTTCTCTCCAAATTTCACTCATTTGTACCAAAATAAAGCTTTCTTCCATAGCCATCTTCCACTTCGTTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATGGTTAGTTTAGTTCTGCTCAAAATTTAGATATTTTCATGTGTGAATTCTGTTAAAAATTTCATCATTCTTTTTGTGCGATGGCTTAATACATAAACAGACACTCGAACAAGCGGGCACTCCATCTTACAAAATGATCATCCAAATTTATTCAAAATTTATGTGTCACGTCAGCATTAGGTGTCCACGAGATAGGGCGGGGACAAATTGGAGTGTTTAGTTGTTAGCTGAGATCAAGTTGAAGTGTTTAGATGCATTGTGCCTTGTGTCATTCATTGTAGAATTATGAATAGTTCGATTGTATGATTCTACTCTATTTGTTTTCATTTATGTGATACGATTTTCTTTTTAGTCTGTTTCAAAAAGAATATCTTTTTTTTTCATATTGAGGAACAATTTACCAATTAATGACATGATTTGTAGCTACACAAATGTGTAAGATTTGTTTTAGATTGTAAGTTTCAATTGTCTTTATTCTAACTTAAACGCGGTATATCTAGTCAAACAGAACTGTTTTCTGATATTTAGTTTGGGCAAAGAATGCTGGTTCACCTCTAAAGTTTGATCTTTTACAAAATTTAAAGGACTGTTGGATCATCAAATGTAAGTCTTGCGATCATTTAGCGTGGGAGGAATCTGATTAGGAGGTAGAAAATGTGGAACTTTCGTGTTGGGACAAATATTAGGAATTGGTATTCCTGTTAAAGATTTGTACCATTTCATATCTTCTCAAGTGTATGAAAATGTTCATCATTGTGAAGGTTCTAGATAAGGCACGTAGTTTTCAAAGGTAAATACAACAACAACTACAAACACAGTGTAATTCTACGAGTTTGGGGAGGGTAACATGTATGCAGACGTACTCCTATATTTATGGGGTAGAGAGGTTGTTTCTGACCCTCGCAAACCCTCCTCCTTTATCTGTCTTGGGACCAGCAATGTGAACGAGTTCACACAGGCGGAGTTTGTCTTCAAAGGTAAATGTATCCATGAAATTAGTTAATGATGGAAATGCAAACTGTAACATAAGCTACCACTTTTCTGATTTTCCTTGTGACACTAGCATAATGCATTTGAAACCATATTTTGGGCTCTTTTTTTTTTCGTCGATTACATATTTGCACTTGCATAAACATCTTATTAGAGAACTCGTATTCACGATTCAGTGTTGCTTCGAAGATGATCAAAATACAATATTTATAACCCTCTCAGCTTCTTGATGGATTTTCAGTCATGCAGGAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGTGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGTATGGTTTGCAAGATTTGTCCATTTCTCCTGCCGAGGCAGTGCTTTATTCCCCTGAAACAAAAACTCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGGCCAGAAAGAAAAAAAGAGGAGAGAGAGAGAACCCCACAACTCGGTGGCAATGGCTGCCCACCTATCCACGACCATTATCTCCCCAAATCTCACTCATTTGGACCAAAATAAAGCTTTCTTCCAGAGCCATCTTCCACTTCGGTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGCGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGCATGGTTTGCAAGATTTGTCCATTTCCCCTGCCGAGGCAGTGCTTTATTCCCCCGAAACAAAAACGCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="11204" PGL_stop="14065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11204" e_stop="11354"/>
            <exon e_start="11698" e_stop="11793"/>
            <exon e_start="12293" e_stop="12821"/>
            <exon e_start="12922" e_stop="13280"/>
            <exon e_start="13621" e_stop="14065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.759" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11204" e_stop="11354" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11355" i_stop="11697" i_length="343"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11698" e_stop="11793" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.970">
            <gDNA_intron_boundary i_start="11794" i_stop="12292" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12293" e_stop="12821" e_length="529"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.759">
            <gDNA_intron_boundary i_start="12822" i_stop="12921" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12922" e_stop="13280" e_length="359"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13281" i_stop="13620" i_length="340"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="13621" e_stop="14065" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11204" stop="11354"/>
              <exon start="11698" stop="11793"/>
              <exon start="12293" stop="12821"/>
              <exon start="12922" stop="13280"/>
              <exon start="13621" stop="14065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTCTTACTACACACACTATCAGTCCAAAAATCATTTTTTAAAATCTCCATCTTACAATTTTTTCAAAACAAAAATCATTTTCCTAATATAATCATGGCTCTTCAAGCTGCTGCATTGCTTCCTTCTACTTTCTCTATTCCAAAGGAG : GGGAAAACTAGTGCATCTTTGAAGGATTCGAGTCTCTTTGGAATTTCTCTCTCTGACCATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAG : AGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGGTTGCATCTCCCGGTGTAACGAGTACCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCGTCTTCAGGACTAGGACTAGCTACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGAGACTTTCTTAAAGCTGAAAGAGCAGCAAAATCAGCAGGGATGCCTAAGGAGAATTATACAATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGAGATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTTACAGCTGAAGGATTTGAGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCGAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGAGACTCATCATTGTTGGTTCGATTACAG : GAAACACAAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTTTAGCAAGGGGGCTCGATGGACTTAACAGCTCAGCCATGATTGACGGTGGTGACTTTGATGGTGCCAAAGCTTACAAAGACAGCAAGGTTTGCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAAGAGACTGGCATCACATTTGCCTCCCTATACCCTGGCTGCATCGCGACAACAGGGCTATTCAGGGAGCATATCCCCTTGTTTAGGCTCCTTTTCCCTCCATTCCAGAAGTTTATCACCAAAGGATTCGTCTCCGAGGCAGAATCTGGAAAGAGACTTGCACAG : GTTGTTAGTGATCCAAGTCTTACAAAATCAGGTGTGTACTGGAGCTGGAACAAGAACTCTTCCTCCTTTGAGAACCAGTTGTCAGAAGAAGCTAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGATTGGCTTAGATTTTTTGCTGATTGAGTTCAACCATCACCAAGACGAACACGAAAAAGGAGTTGATGAAGGAGAATTTGAATCGAGTCTGTTTTGTTGTAGTTAAAAAGTTGTCACTTCGTAAAATTTTTGAGTTAGGAATAAATATCATTCATCCTTTTAGAATCGAGCGCTTACCAACACGCCAACAATTATAGCGCTCACAACTTTAAGTCCACCCAACAAGCGTCATGTTCGATCAATGACTCACTCAACAATTTCCAGTATGAATGATCATGTGAATTATGATTCCGTATTCAC</gDNA_template>
            <first_frame> Q  I  L  T  T  H  T  I  S  P  K  I  I  F  *  N  L  H  L  T  I  F  S  K  Q  K  S  F  S  *  Y  N  H  G  S  S  S  C  C  I  A  S  F  Y  F  L  Y  S  K  G   : G  E  N  *  C  I  F  E  G  F  E  S  L  W  N  F  S  L  *  P  C  *  I  *  F  W  L  F  I  Q  N  Q   : E  R  K  K  V  I  P  R  S  Y  *  S  R  D  N  G  C  I  S  R  C  N  E  Y  P  C  D  R  K  E  N  L  K  K  R  L  C  S  N  H  W  S  V  F  R  T  R  T  S  Y  S  K  S  S  G  *  D  R  E  M  A  C  N  Y  G  M  *  R  L  S  *  S  *  K  S  S  K  I  S  R  D  A  *  G  E  L  Y  N  N  A  F  R  P  C  I  A  *  Q  R  Q  T  I  C  R  *  L  *  E  I  R  Q  S  S  *  C  I  G  L  Q  C  S  C  L  S  A  Y  R  E  R  A  F  V  Y  S  *  R  I  *  A  *  C  W  D  *  P  S  W  S  F  P  S  F  E  I  V  D  *  *  F  E  A  V  *  L  P  F  K  E  T  H  H  C  W  F  D  Y  R :   K  H  K  H  I  G  W  K  C  T  S  K  G  Q  P  R  G  L  E  G  F  S  K  G  A  R  W  T  *  Q  L  S  H  D  *  R  W  *  L  *  W  C  Q  S  L  Q  R  Q  Q  G  L  Q  Y  A  H  Y  A  G  I  P  *  T  I  P  R  R  D  W  H  H  I  C  L  P  I  P  W  L  H  R  D  N  R  A  I  Q  G  A  Y  P  L  V  *  A  P  F  P  S  I  P  E  V  Y  H  Q  R  I  R  L  R  G  R  I  W  K  E  T  C  T   : G  C  *  *  S  K  S  Y  K  I  R  C  V  L  E  L  E  Q  E  L  F  L  L  *  E  P  V  V  R  R  S  *  *  R  *  E  S  A  *  S  V  G  S  Q  *  E  T  R  G  I  G  L  D  F  L  L  I  E  F  N  H  H  Q  D  E  H  E  K  G  V  D  E  G  E  F  E  S  S  L  F  C  C  S  *  K  V  V  T  S  *  N  F  *  V  R  N  K  Y  H  S  S  F  *  N  R  A  L  T  N  T  P  T  I  I  A  L  T  T  L  S  P  P  N  K  R  H  V  R  S  M  T  H  S  T  I  S  S  M  N  D  H  V  N  Y  D  S  V  F   </first_frame>
            <second_frame>  K  F  L  L  H  T  L  S  V  Q  K  S  F  F  K  I  S  I  L  Q  F  F  Q  N  K  N  H  F  P  N  I  I  M  A  L  Q  A  A  A  L  L  P  S  T  F  S  I  P  K  E  :  G  K  T  S  A  S  L  K  D  S  S  L  F  G  I  S  L  S  D  H  V  K  S  D  F  G  S  S  F  K  I  K  :  S  G  R  K  S  S  L  G  A  I  R  A  E  T  M  V  A  S  P  G  V  T  S  T  P  V  T  G  K  K  T  L  R  K  G  C  V  V  I  T  G  A  S  S  G  L  G  L  A  T  A  K  A  L  A  E  T  G  K  W  H  V  I  M  A  C  R  D  F  L  K  A  E  R  A  A  K  S  A  G  M  P  K  E  N  Y  T  I  M  H  L  D  L  A  S  L  D  S  V  R  Q  F  V  D  N  F  R  R  S  G  N  P  L  D  V  L  V  C  N  A  A  V  Y  Q  P  T  A  K  E  P  S  F  T  A  E  G  F  E  L  S  V  G  T  N  H  L  G  H  F  L  L  S  R  L  L  I  D  D  L  K  Q  S  D  Y  P  S  K  R  L  I  I  V  G  S  I  T   : G  N  T  N  T  L  A  G  N  V  P  P  K  A  N  L  G  D  L  R  G  L  A  R  G  L  D  G  L  N  S  S  A  M  I  D  G  G  D  F  D  G  A  K  A  Y  K  D  S  K  V  C  N  M  L  T  M  Q  E  F  H  R  R  Y  H  E  E  T  G  I  T  F  A  S  L  Y  P  G  C  I  A  T  T  G  L  F  R  E  H  I  P  L  F  R  L  L  F  P  P  F  Q  K  F  I  T  K  G  F  V  S  E  A  E  S  G  K  R  L  A  Q  :  V  V  S  D  P  S  L  T  K  S  G  V  Y  W  S  W  N  K  N  S  S  S  F  E  N  Q  L  S  E  E  A  S  D  V  E  K  A  R  K  V  W  E  V  S  E  K  L  V  G  L  A  *  I  F  C  *  L  S  S  T  I  T  K  T  N  T  K  K  E  L  M  K  E  N  L  N  R  V  C  F  V  V  V  K  K  L  S  L  R  K  I  F  E  L  G  I  N  I  I  H  P  F  R  I  E  R  L  P  T  R  Q  Q  L  *  R  S  Q  L  *  V  H  P  T  S  V  M  F  D  Q  *  L  T  Q  Q  F  P  V  *  M  I  M  *  I  M  I  P  Y  S  </second_frame>
            <third_frame>   N  S  Y  Y  T  H  Y  Q  S  K  N  H  F  L  K  S  P  S  Y  N  F  F  K  T  K  I  I  F  L  I  *  S  W  L  F  K  L  L  H  C  F  L  L  L  S  L  F  Q  R  R :   G  K  L  V  H  L  *  R  I  R  V  S  L  E  F  L  S  L  T  M  L  N  L  I  L  A  L  H  S  K  S  R :   A  E  E  S  H  P  S  E  L  L  E  P  R  Q  W  L  H  L  P  V  *  R  V  P  L  *  Q  E  R  K  P  *  E  K  V  V  *  *  S  L  E  R  L  Q  D  *  D  *  L  Q  Q  K  L  W  L  R  Q  G  N  G  M  *  L  W  H  V  E  T  F  L  K  L  K  E  Q  Q  N  Q  Q  G  C  L  R  R  I  I  Q  *  C  I  *  T  L  H  R  L  T  A  S  D  N  L  S  I  T  L  G  D  Q  A  I  L  L  M  Y  W  F  A  M  Q  L  F  I  S  L  P  R  K  S  L  R  L  Q  L  K  D  L  S  L  V  L  G  L  T  I  L  V  I  S  F  F  R  D  C  *  L  M  I  *  S  S  L  I  T  L  Q  R  D  S  S  L  L  V  R  L  Q  :  E  T  Q  T  H  W  L  E  M  Y  L  Q  R  P  T  S  G  T  *  G  V  *  Q  G  G  S  M  D  L  T  A  Q  P  *  L  T  V  V  T  L  M  V  P  K  L  T  K  T  A  R  F  A  I  C  S  L  C  R  N  S  I  D  D  T  T  K  R  L  A  S  H  L  P  P  Y  T  L  A  A  S  R  Q  Q  G  Y  S  G  S  I  S  P  C  L  G  S  F  S  L  H  S  R  S  L  S  P  K  D  S  S  P  R  Q  N  L  E  R  D  L  H  R :   L  L  V  I  Q  V  L  Q  N  Q  V  C  T  G  A  G  T  R  T  L  P  P  L  R  T  S  C  Q  K  K  L  V  T  L  R  K  R  V  K  C  G  K  S  V  R  N  S  W  D  W  L  R  F  F  A  D  *  V  Q  P  S  P  R  R  T  R  K  R  S  *  *  R  R  I  *  I  E  S  V  L  L  *  L  K  S  C  H  F  V  K  F  L  S  *  E  *  I  S  F  I  L  L  E  S  S  A  Y  Q  H  A  N  N  Y  S  A  H  N  F  K  S  T  Q  Q  A  S  C  S  I  N  D  S  L  N  N  F  Q  Y  E  *  S  C  E  L  *  F  R  I  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11205" stop="11354"/>
                    <exon start="11698" stop="11793"/>
                    <exon start="12293" stop="12821"/>
                    <exon start="12922" stop="13280"/>
                    <exon start="13621" stop="13776"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLHTLSVQKSFFKISILQFFQNKNHFPNIIMALQAAALLPSTFSIPKEGKTSASLKDSSLFGISLSDHVKSDFGSSFKIKSGRKSSLGAIRAETMVASPGVTSTPVTGKKTLRKGCVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVDNFRRSGNPLDVLVCNAAVYQPTAKEPSFTAEGFELSVGTNHLGHFLLSRLLIDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLARGLDGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKFITKGFVSEAESGKRLAQVVSDPSLTKSGVYWSWNKNSSSFENQLSEEASDVEKARKVWEVSEKLVGLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16566" PGL_stop="14281"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16566" e_stop="16319"/>
            <exon e_start="15573" e_stop="15330"/>
            <exon e_start="14933" e_stop="14813"/>
            <exon e_start="14638" e_stop="14281"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.367" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16566" e_stop="16319" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.367">
            <gDNA_intron_boundary i_start="16318" i_stop="15574" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15573" e_stop="15330" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15329" i_stop="14934" i_length="396"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14933" e_stop="14813" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="14812" i_stop="14639" i_length="174"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="14638" e_stop="14281" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16566" stop="16319"/>
              <exon start="15573" stop="15330"/>
              <exon start="14933" stop="14813"/>
              <exon start="14638" stop="14281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15418" stop="15330"/>
              <exon start="14933" stop="14813"/>
              <exon start="14638" stop="14304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334587" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATCTTGAAGCTAAAAAAAACAAAAAAAAAAACAAACGATGTTGGCTATATTTCACAAGGCATTTGCTCATCCTCCTGAAGAATTAAATAGTCCTGCATCAAAAAAATGTTTACTTCCACAACAAACGCTACAAAAATTCGTATCGACTCGTCCATTTGACACCTCTTATGTTACTTTTGGAGATGTTGCTGCTCTTGCTTTTGTTCGTCCTAATTGCACCTCCTTGCTCAATCACAAACAAAG : GTATTTTTGTGGTTATGATGATATTTACTGTTTGTTCATGGGGAGTTTGAACAATTTGTGTGCACAAATCAAACAATATGGGCTATCACCAAAAGGTACAAATGAAGCCATGCTAGTCATTGAAGCCTACAGGACACTTAGAGACAGGGGACCTTATCCAGCTGATCAAGTTATTAAGGATTTTGAAGGAAGTTTTGCTTTTGTTATCTATGATAGTAAAACTGGAACTGTATTTGTTGCTTTG : GGTTCAGATGGTGGGGTGAAGTTATTTTGGGGTATTGCTGCTGATGGATCTGTGGTGATTTCTGATGATGTAGAGGTTATTAAAGCTGGATGTGCTAAGTCATTTGCACCCTTTCCCACAG : GTTGTATGTTCCATAGTGAGAAAGGACTAATGAATTTCGAGCACCCGATGAACAAGATGAGGGCTATGCCAAGAGTAGATAGTGAAGGGGTAATGTGTGGAGCCAACTTCAAAGTGGATATGTATTCAAGAGTTAATAGCATCCCTAGAGTTGGCAGTGAAGCTAACTGGTCTGACTGGAACACTTCTTACTAAGTCGATTCTCTGCAATTTTCAAACTTCCTTTAGTGTTTGTTCTGTTTTGGTTAGATTTTCGAGTTTGTTTTAGGTTTGGTTTCTTTCCTGTACGTGCTTTGCACCTGTGTATAACGCTTGAAAAATAAATGAAACATTAGAAATGATTCAGCTTATTCGATGAC</gDNA_template>
            <first_frame> I  S  S  *  S  *  K  K  Q  K  K  K  Q  T  M  L  A  I  F  H  K  A  F  A  H  P  P  E  E  L  N  S  P  A  S  K  K  C  L  L  P  Q  Q  T  L  Q  K  F  V  S  T  R  P  F  D  T  S  Y  V  T  F  G  D  V  A  A  L  A  F  V  R  P  N  C  T  S  L  L  N  H  K  Q  R :   Y  F  C  G  Y  D  D  I  Y  C  L  F  M  G  S  L  N  N  L  C  A  Q  I  K  Q  Y  G  L  S  P  K  G  T  N  E  A  M  L  V  I  E  A  Y  R  T  L  R  D  R  G  P  Y  P  A  D  Q  V  I  K  D  F  E  G  S  F  A  F  V  I  Y  D  S  K  T  G  T  V  F  V  A  L  :  G  S  D  G  G  V  K  L  F  W  G  I  A  A  D  G  S  V  V  I  S  D  D  V  E  V  I  K  A  G  C  A  K  S  F  A  P  F  P  T   : G  C  M  F  H  S  E  K  G  L  M  N  F  E  H  P  M  N  K  M  R  A  M  P  R  V  D  S  E  G  V  M  C  G  A  N  F  K  V  D  M  Y  S  R  V  N  S  I  P  R  V  G  S  E  A  N  W  S  D  W  N  T  S  Y  *  V  D  S  L  Q  F  S  N  F  L  *  C  L  F  C  F  G  *  I  F  E  F  V  L  G  L  V  S  F  L  Y  V  L  C  T  C  V  *  R  L  K  N  K  *  N  I  R  N  D  S  A  Y  S  M   </first_frame>
            <second_frame>  F  H  L  E  A  K  K  N  K  K  K  N  K  R  C  W  L  Y  F  T  R  H  L  L  I  L  L  K  N  *  I  V  L  H  Q  K  N  V  Y  F  H  N  K  R  Y  K  N  S  Y  R  L  V  H  L  T  P  L  M  L  L  L  E  M  L  L  L  L  L  L  F  V  L  I  A  P  P  C  S  I  T  N  K   : G  I  F  V  V  M  M  I  F  T  V  C  S  W  G  V  *  T  I  C  V  H  K  S  N  N  M  G  Y  H  Q  K  V  Q  M  K  P  C  *  S  L  K  P  T  G  H  L  E  T  G  D  L  I  Q  L  I  K  L  L  R  I  L  K  E  V  L  L  L  L  S  M  I  V  K  L  E  L  Y  L  L  L  W :   V  Q  M  V  G  *  S  Y  F  G  V  L  L  L  M  D  L  W  *  F  L  M  M  *  R  L  L  K  L  D  V  L  S  H  L  H  P  F  P  Q  :  V  V  C  S  I  V  R  K  D  *  *  I  S  S  T  R  *  T  R  *  G  L  C  Q  E  *  I  V  K  G  *  C  V  E  P  T  S  K  W  I  C  I  Q  E  L  I  A  S  L  E  L  A  V  K  L  T  G  L  T  G  T  L  L  T  K  S  I  L  C  N  F  Q  T  S  F  S  V  C  S  V  L  V  R  F  S  S  L  F  *  V  W  F  L  S  C  T  C  F  A  P  V  Y  N  A  *  K  I  N  E  T  L  E  M  I  Q  L  I  R  *  </second_frame>
            <third_frame>   F  I  L  K  L  K  K  T  K  K  K  T  N  D  V  G  Y  I  S  Q  G  I  C  S  S  S  *  R  I  K  *  S  C  I  K  K  M  F  T  S  T  T  N  A  T  K  I  R  I  D  S  S  I  *  H  L  L  C  Y  F  W  R  C  C  C  S  C  F  C  S  S  *  L  H  L  L  A  Q  S  Q  T  K  :  V  F  L  W  L  *  *  Y  L  L  F  V  H  G  E  F  E  Q  F  V  C  T  N  Q  T  I  W  A  I  T  K  R  Y  K  *  S  H  A  S  H  *  S  L  Q  D  T  *  R  Q  G  T  L  S  S  *  S  S  Y  *  G  F  *  R  K  F  C  F  C  Y  L  *  *  *  N  W  N  C  I  C  C  F   : G  F  R  W  W  G  E  V  I  L  G  Y  C  C  *  W  I  C  G  D  F  *  *  C  R  G  Y  *  S  W  M  C  *  V  I  C  T  L  S  H  R :   L  Y  V  P  *  *  E  R  T  N  E  F  R  A  P  D  E  Q  D  E  G  Y  A  K  S  R  *  *  R  G  N  V  W  S  Q  L  Q  S  G  Y  V  F  K  S  *  *  H  P  *  S  W  Q  *  S  *  L  V  *  L  E  H  F  L  L  S  R  F  S  A  I  F  K  L  P  L  V  F  V  L  F  W  L  D  F  R  V  C  F  R  F  G  F  F  P  V  R  A  L  H  L  C  I  T  L  E  K  *  M  K  H  *  K  *  F  S  L  F  D  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16548" stop="16319"/>
                    <exon start="15573" stop="15330"/>
                    <exon start="14933" stop="14813"/>
                    <exon start="14638" stop="14445"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKQKKKQTMLAIFHKAFAHPPEELNSPASKKCLLPQQTLQKFVSTRPFDTSYVTFGDVAALAFVRPNCTSLLNHKQRYFCGYDDIYCLFMGSLNNLCAQIKQYGLSPKGTNEAMLVIEAYRTLRDRGPYPADQVIKDFEGSFAFVIYDSKTGTVFVALGSDGGVKLFWGIAADGSVVISDDVEVIKAGCAKSFAPFPTGCMFHSEKGLMNFEHPMNKMRAMPRVDSEGVMCGANFKVDMYSRVNSIPRVGSEANWSDWNTSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23483" PGL_stop="31201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23483" e_stop="23592"/>
            <exon e_start="24080" e_stop="24226"/>
            <exon e_start="24365" e_stop="24430"/>
            <exon e_start="24890" e_stop="25055"/>
            <exon e_start="25155" e_stop="25386"/>
            <exon e_start="25714" e_stop="26487"/>
            <exon e_start="29132" e_stop="29145"/>
            <exon e_start="29354" e_stop="29369"/>
            <exon e_start="30823" e_stop="30846"/>
            <exon e_start="31180" e_stop="31201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.358" e_score="0.995"/>
          <exon-intron don_prob="0.960" acc_prob="0.710" e_score="0.500"/>
          <exon-intron don_prob="0.968" acc_prob="0.586" e_score="0.688"/>
          <exon-intron don_prob="0.731" acc_prob="0.959" e_score="0.417"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23483" e_stop="23592" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="23593" i_stop="24079" i_length="487"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24080" e_stop="24226" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="24227" i_stop="24364" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24365" e_stop="24430" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.972">
            <gDNA_intron_boundary i_start="24431" i_stop="24889" i_length="459"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24890" e_stop="25055" e_length="166"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25056" i_stop="25154" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25155" e_stop="25386" e_length="232"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25387" i_stop="25713" i_length="327"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="25714" e_stop="26487" e_length="774"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.358">
            <gDNA_intron_boundary i_start="26488" i_stop="29131" i_length="2644"/>
          </intron>
          <exon e_serial="7" e_score="0.500">
            <gDNA_exon_boundary e_start="29132" e_stop="29145" e_length="14"/>
          </exon>
          <intron i_serial="7" don_prob="0.960" acc_prob="0.710">
            <gDNA_intron_boundary i_start="29146" i_stop="29353" i_length="208"/>
          </intron>
          <exon e_serial="8" e_score="0.688">
            <gDNA_exon_boundary e_start="29354" e_stop="29369" e_length="16"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.586">
            <gDNA_intron_boundary i_start="29370" i_stop="30822" i_length="1453"/>
          </intron>
          <exon e_serial="9" e_score="0.417">
            <gDNA_exon_boundary e_start="30823" e_stop="30846" e_length="24"/>
          </exon>
          <intron i_serial="9" don_prob="0.731" acc_prob="0.959">
            <gDNA_intron_boundary i_start="30847" i_stop="31179" i_length="333"/>
          </intron>
          <exon e_serial="10" e_score="0.636">
            <gDNA_exon_boundary e_start="31180" e_stop="31201" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23483" stop="23592"/>
              <exon start="24080" stop="24226"/>
              <exon start="24365" stop="24430"/>
              <exon start="24890" stop="25055"/>
              <exon start="25155" stop="25386"/>
              <exon start="25714" stop="26487"/>
              <exon start="29132" stop="29145"/>
              <exon start="29354" stop="29369"/>
              <exon start="30823" stop="30846"/>
              <exon start="31180" stop="31201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTAAAAATTAAATTGGGAGAAACAGAGAAATAATGGAGACTGAAGAAAATATTGTAATTGTTGGTGCTGGTATAGCTGGTCTTGCTACTTCTTTGGCCCTTCACAG : ATTGGGGCTGCGGAGTATTGTGTTGGAATCAGCTGATTCGTTGCGAGCTACTGGATTTGCATTGGCGTTGTGGACTAATGCCTGGAGAGCTTTGGATGCATTGGACATTGGGGACTCTCTTAGACAACGTTCTTTATCCATTACTGG : GTTTAAAAGTTTCTCAGCGGAATCAGGTGCACCTATCACGGAGGTATCATTTGTGGGGAATAACAG : TGTGGAGTATGAAAGTCGTTGTGTGAGAAGAAAAGATCTGTTGGAGACATTAGCTAATGAACTGCCTCAAGGCGCTATTAGATATTCTTCTAAGGTAGATTCCGTTGAAGTATCTGGACCATTGAAATTGGTACATCTTGCAGATGGTTGCACTATTAGAACCAAG : GCCTTAATTGGGTGTGACGGAGTCAATTCTGTGGTGGCAAACTGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATT : TTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTTAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCGAGAAATATGCTAAAGAGAGGAGATGGAGAAGTTTTACATTTATCAGTGCTGCTTATTTATCTGGTTTCATACAAGAGACTGATAACAAGATAATCAGTTTCTTAAGACAACATTTTTTAGGTGGAGTTACTATATCAGTTACACTAAAAATTGCTAACTTCGACTGCGGAAAACTAGCTGTTTCTTAGTAGCTCCAATTGGATCCTTTAGAGGCTATGAATATCTTTTATGGACTTTGTTTAATATCTATCTAGCATACATGTTCCGGTTTAGTTGTGTCTAAAGAATTGTAAGACCGAGTCGGATCCTTATTTTGCAATAATGAAATTGTGTACTACATCAAAGATATCCAAGAACATCAGTTGTTTAGAAGCAAATATGGTAACATCTGCATTTTATAATTATCATGGAATAGAATAAGTG : GAGAAAATGAAAAG : CCCTAAATTTTAACAA : AATATACCGATGATCTTCATCAAA : AATTAAAAAAATGACAAAAAAG</gDNA_template>
            <first_frame> L  I  K  N  *  I  G  R  N  R  E  I  M  E  T  E  E  N  I  V  I  V  G  A  G  I  A  G  L  A  T  S  L  A  L  H  R :   L  G  L  R  S  I  V  L  E  S  A  D  S  L  R  A  T  G  F  A  L  A  L  W  T  N  A  W  R  A  L  D  A  L  D  I  G  D  S  L  R  Q  R  S  L  S  I  T  G :   F  K  S  F  S  A  E  S  G  A  P  I  T  E  V  S  F  V  G  N  N  S :   V  E  Y  E  S  R  C  V  R  R  K  D  L  L  E  T  L  A  N  E  L  P  Q  G  A  I  R  Y  S  S  K  V  D  S  V  E  V  S  G  P  L  K  L  V  H  L  A  D  G  C  T  I  R  T  K  :  A  L  I  G  C  D  G  V  N  S  V  V  A  N  W  L  G  L  Q  K  P  V  Y  S  G  R  S  A  I  R  G  F  V  E  Y  P  E  K  H  G  Y  Q  P  K  F  H  A  Y  F  G  G  G  V  R  F  G  F  L  P  S  D  E  K  S  L  Y  W  F  C  T  F  T  P  S  V  V  H   : F  D  G  N  A  E  Q  D  P  I  K  L  K  Q  F  V  L  N  K  A  S  N  V  S  K  E  L  S  T  V  I  D  R  T  T  L  D  S  I  S  I  A  Q  L  K  L  R  V  P  W  N  V  L  F  G  N  I  L  K  N  N  V  C  V  V  G  D  A  L  H  P  M  T  P  D  L  G  Q  G  G  C  S  A  L  E  D  S  V  V  I  A  K  C  L  A  E  A  L  I  K  P  I  T  E  Q  E  D  D  E  S  M  R  I  R  K  G  L  E  K  Y  A  K  E  R  R  W  R  S  F  T  F  I  S  A  A  Y  L  S  G  F  I  Q  E  T  D  N  K  I  I  S  F  L  R  Q  H  F  L  G  G  V  T  I  S  V  T  L  K  I  A  N  F  D  C  G  K  L  A  V  S  *  *  L  Q  L  D  P  L  E  A  M  N  I  F  Y  G  L  C  L  I  S  I  *  H  T  C  S  G  L  V  V  S  K  E  L  *  D  R  V  G  S  L  F  C  N  N  E  I  V  Y  Y  I  K  D  I  Q  E  H  Q  L  F  R  S  K  Y  G  N  I  C  I  L  *  L  S  W  N  R  I  S   : G  E  N  E  K  :  P  *  I  L  T   : K  Y  T  D  D  L  H  Q   : K  L  K  K  *  Q  K   </first_frame>
            <second_frame>  *  L  K  I  K  L  G  E  T  E  K  *  W  R  L  K  K  I  L  *  L  L  V  L  V  *  L  V  L  L  L  L  W  P  F  T   : D  W  G  C  G  V  L  C  W  N  Q  L  I  R  C  E  L  L  D  L  H  W  R  C  G  L  M  P  G  E  L  W  M  H  W  T  L  G  T  L  L  D  N  V  L  Y  P  L  L   : G  L  K  V  S  Q  R  N  Q  V  H  L  S  R  R  Y  H  L  W  G  I  T   : V  W  S  M  K  V  V  V  *  E  E  K  I  C  W  R  H  *  L  M  N  C  L  K  A  L  L  D  I  L  L  R  *  I  P  L  K  Y  L  D  H  *  N  W  Y  I  L  Q  M  V  A  L  L  E  P  R :   P  *  L  G  V  T  E  S  I  L  W  W  Q  T  G  L  G  F  R  N  L  S  I  L  G  A  L  Q  L  E  A  L  L  S  I  P  K  N  M  V  I  S  L  S  S  T  H  I  L  E  V  E  F  G  L  D  F  F  L  V  M  R  R  V  Y  T  G  F  A  H  S  H  H  L  L  F  I  :  L  M  E  M  Q  N  K  I  Q  L  N  *  S  N  S  C  *  T  R  P  V  M  C  L  K  N  S  P  P  L  *  T  E  Q  L  S  T  L  Y  L  L  L  S  *  N  *  E  Y  H  G  M  F  C  L  G  I  F  *  K  I  T  S  V  W  *  V  M  H  F  I  P  *  L  L  I  L  V  K  V  D  V  L  L  *  R  T  V  L  L  S  Q  S  A  L  Q  K  P  *  *  N  R  *  Q  N  K  K  T  M  N  L  *  G  L  E  K  D  S  R  N  M  L  K  R  G  D  G  E  V  L  H  L  S  V  L  L  I  Y  L  V  S  Y  K  R  L  I  T  R  *  S  V  S  *  D  N  I  F  *  V  E  L  L  Y  Q  L  H  *  K  L  L  T  S  T  A  E  N  *  L  F  L  S  S  S  N  W  I  L  *  R  L  *  I  S  F  M  D  F  V  *  Y  L  S  S  I  H  V  P  V  *  L  C  L  K  N  C  K  T  E  S  D  P  Y  F  A  I  M  K  L  C  T  T  S  K  I  S  K  N  I  S  C  L  E  A  N  M  V  T  S  A  F  Y  N  Y  H  G  I  E  *  V  :  E  K  M  K  S :   P  K  F  *  Q  :  N  I  P  M  I  F  I  K  :  N  *  K  N  D  K  K  </second_frame>
            <third_frame>   N  *  K  L  N  W  E  K  Q  R  N  N  G  D  *  R  K  Y  C  N  C  W  C  W  Y  S  W  S  C  Y  F  F  G  P  S  Q  :  I  G  A  A  E  Y  C  V  G  I  S  *  F  V  A  S  Y  W  I  C  I  G  V  V  D  *  C  L  E  S  F  G  C  I  G  H  W  G  L  S  *  T  T  F  F  I  H  Y  W  :  V  *  K  F  L  S  G  I  R  C  T  Y  H  G  G  I  I  C  G  E  *  Q  :  C  G  V  *  K  S  L  C  E  K  K  R  S  V  G  D  I  S  *  *  T  A  S  R  R  Y  *  I  F  F  *  G  R  F  R  *  S  I  W  T  I  E  I  G  T  S  C  R  W  L  H  Y  *  N  Q   : G  L  N  W  V  *  R  S  Q  F  C  G  G  K  L  A  W  A  S  E  T  C  L  F  W  A  L  C  N  *  R  L  C  *  V  S  R  K  T  W  L  S  A  *  V  P  R  I  F  W  R  W  S  S  V  W  I  S  S  *  *  *  E  E  F  I  L  V  L  H  I  H  T  I  C  C  S  F :   *  W  K  C  R  T  R  S  N  *  I  E  A  I  R  V  E  Q  G  Q  *  C  V  *  R  T  L  H  R  Y  R  Q  N  N  S  R  L  Y  I  Y  C  S  A  E  I  E  S  T  M  E  C  S  V  W  E  Y  F  E  K  *  R  L  C  G  R  *  C  T  S  S  H  D  S  *  S  W  S  R  W  M  F  C  F  R  G  Q  C  C  Y  R  K  V  P  C  R  S  L  D  K  T  D  N  R  T  R  R  R  *  I  Y  E  D  *  K  R  T  R  E  I  C  *  R  E  E  M  E  K  F  Y  I  Y  Q  C  C  L  F  I  W  F  H  T  R  D  *  *  Q  D  N  Q  F  L  K  T  T  F  F  R  W  S  Y  Y  I  S  Y  T  K  N  C  *  L  R  L  R  K  T  S  C  F  L  V  A  P  I  G  S  F  R  G  Y  E  Y  L  L  W  T  L  F  N  I  Y  L  A  Y  M  F  R  F  S  C  V  *  R  I  V  R  P  S  R  I  L  I  L  Q  *  *  N  C  V  L  H  Q  R  Y  P  R  T  S  V  V  *  K  Q  I  W  *  H  L  H  F  I  I  I  M  E  *  N  K  W :   R  K  *  K   : A  L  N  F  N  K :   I  Y  R  *  S  S  S  K :   I  K  K  M  T  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23498" stop="23592"/>
                    <exon start="24080" stop="24226"/>
                    <exon start="24365" stop="24430"/>
                    <exon start="24890" stop="25055"/>
                    <exon start="25155" stop="25386"/>
                    <exon start="25714" stop="26252"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGRNREIMETEENIVIVGAGIAGLATSLALHRLGLRSIVLESADSLRATGFALALWTNAWRALDALDIGDSLRQRSLSITGFKSFSAESGAPITEVSFVGNNSVEYESRCVRRKDLLETLANELPQGAIRYSSKVDSVEVSGPLKLVHLADGCTIRTKALIGCDGVNSVVANWLGLQKPVYSGRSAIRGFVEYPEKHGYQPKFHAYFGGGVRFGFLPSDEKSLYWFCTFTPSVVHFDGNAEQDPIKLKQFVLNKASNVSKELSTVIDRTTLDSISIAQLKLRVPWNVLFGNILKNNVCVVGDALHPMTPDLGQGGCSALEDSVVIAKCLAEALIKPITEQEDDESMRIRKGLEKYAKERRWRSFTFISAAYLSGFIQETDNKIISFLRQHFLGGVTISVTLKIANFDCGKLAVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25197" e_stop="26089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="25197" e_stop="26089" e_length="893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25197" stop="26089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCTTGGGCTTCAGAAACCTGTCTATTCTGGGCGCTCTGCAATTAGAGGCTTTGTTGAGTATCCCGAAAAACATGGTTATCAGCCTAAGTTCCACGCATATTTTGGAGGTGGAGTTCGGTTTGGATTTCTTCCTAGTGATGAGAAGAGTTTATACTGGTTTTGCACATTCACACCATCTGTTGTTCATTGTAAGCCACCTCTTACATACCGTTTCTTTTGAAGATTTACTTTTTGAAGGATATTGGTGTTGGCTAGAGAGCTTAACTCTCTGAAGTGGGAGCCTTGACGTAATTGGTAAAGTTACTGTCATGTGACCTAGAGGTTACGGATCCGAGCTGTAGAAACAGCCTCTTGCAGAAATGCAGGTTAAGATTGCATACATTAGTTCCCTGTGGTCCAGGCCTTCCCCCGAACCCTGTGCATAGCAGGCGCTTAGTGCACCGAGCTGTCTAGATATCTTACATCTCATAAACTAGTCATGTTTAGTTGTTCATTTTAATTGGGATTTTATGCAGTTGATGGAAATGCAGAACAAGATCCAATTAAATTGAAGCAATTCGTGTTGAACAAGGCCAGTAATGTGTCTAAAGAACTCTCCACCGTTATAGACAGAACAACTCTCGACTCTATATCTATTGCTCAGCTGAAATTGAGAGTACCATGGAATGTTCTGTTTGGGAATATTTTGAAAAATAACGTCTGTGTGGTAGGTGATGCACTTCATCCCATGACTCCTGATCTTGGTCAAGGTGGATGTTCTGCTTTAGAGGACAGTGTTGTTATCGCAAAGTGCCTTGCAGAAGCCTTGATAAAACCGATAACAGAACAAGAAGACGATGAATCTATGAGGATTAGAAAAGGACTCGAGAAATATGCTAAAGAGAGGAGATG</gDNA_template>
            <first_frame> W  L  G  L  Q  K  P  V  Y  S  G  R  S  A  I  R  G  F  V  E  Y  P  E  K  H  G  Y  Q  P  K  F  H  A  Y  F  G  G  G  V  R  F  G  F  L  P  S  D  E  K  S  L  Y  W  F  C  T  F  T  P  S  V  V  H  C  K  P  P  L  T  Y  R  F  F  *  R  F  T  F  *  R  I  L  V  L  A  R  E  L  N  S  L  K  W  E  P  *  R  N  W  *  S  Y  C  H  V  T  *  R  L  R  I  R  A  V  E  T  A  S  C  R  N  A  G  *  D  C  I  H  *  F  P  V  V  Q  A  F  P  R  T  L  C  I  A  G  A  *  C  T  E  L  S  R  Y  L  T  S  H  K  L  V  M  F  S  C  S  F  *  L  G  F  Y  A  V  D  G  N  A  E  Q  D  P  I  K  L  K  Q  F  V  L  N  K  A  S  N  V  S  K  E  L  S  T  V  I  D  R  T  T  L  D  S  I  S  I  A  Q  L  K  L  R  V  P  W  N  V  L  F  G  N  I  L  K  N  N  V  C  V  V  G  D  A  L  H  P  M  T  P  D  L  G  Q  G  G  C  S  A  L  E  D  S  V  V  I  A  K  C  L  A  E  A  L  I  K  P  I  T  E  Q  E  D  D  E  S  M  R  I  R  K  G  L  E  K  Y  A  K  E  R  R   </first_frame>
            <second_frame>  G  L  G  F  R  N  L  S  I  L  G  A  L  Q  L  E  A  L  L  S  I  P  K  N  M  V  I  S  L  S  S  T  H  I  L  E  V  E  F  G  L  D  F  F  L  V  M  R  R  V  Y  T  G  F  A  H  S  H  H  L  L  F  I  V  S  H  L  L  H  T  V  S  F  E  D  L  L  F  E  G  Y  W  C  W  L  E  S  L  T  L  *  S  G  S  L  D  V  I  G  K  V  T  V  M  *  P  R  G  Y  G  S  E  L  *  K  Q  P  L  A  E  M  Q  V  K  I  A  Y  I  S  S  L  W  S  R  P  S  P  E  P  C  A  *  Q  A  L  S  A  P  S  C  L  D  I  L  H  L  I  N  *  S  C  L  V  V  H  F  N  W  D  F  M  Q  L  M  E  M  Q  N  K  I  Q  L  N  *  S  N  S  C  *  T  R  P  V  M  C  L  K  N  S  P  P  L  *  T  E  Q  L  S  T  L  Y  L  L  L  S  *  N  *  E  Y  H  G  M  F  C  L  G  I  F  *  K  I  T  S  V  W  *  V  M  H  F  I  P  *  L  L  I  L  V  K  V  D  V  L  L  *  R  T  V  L  L  S  Q  S  A  L  Q  K  P  *  *  N  R  *  Q  N  K  K  T  M  N  L  *  G  L  E  K  D  S  R  N  M  L  K  R  G  D  </second_frame>
            <third_frame>   A  W  A  S  E  T  C  L  F  W  A  L  C  N  *  R  L  C  *  V  S  R  K  T  W  L  S  A  *  V  P  R  I  F  W  R  W  S  S  V  W  I  S  S  *  *  *  E  E  F  I  L  V  L  H  I  H  T  I  C  C  S  L  *  A  T  S  Y  I  P  F  L  L  K  I  Y  F  L  K  D  I  G  V  G  *  R  A  *  L  S  E  V  G  A  L  T  *  L  V  K  L  L  S  C  D  L  E  V  T  D  P  S  C  R  N  S  L  L  Q  K  C  R  L  R  L  H  T  L  V  P  C  G  P  G  L  P  P  N  P  V  H  S  R  R  L  V  H  R  A  V  *  I  S  Y  I  S  *  T  S  H  V  *  L  F  I  L  I  G  I  L  C  S  *  W  K  C  R  T  R  S  N  *  I  E  A  I  R  V  E  Q  G  Q  *  C  V  *  R  T  L  H  R  Y  R  Q  N  N  S  R  L  Y  I  Y  C  S  A  E  I  E  S  T  M  E  C  S  V  W  E  Y  F  E  K  *  R  L  C  G  R  *  C  T  S  S  H  D  S  *  S  W  S  R  W  M  F  C  F  R  G  Q  C  C  Y  R  K  V  P  C  R  S  L  D  K  T  D  N  R  T  R  R  R  *  I  Y  E  D  *  K  R  T  R  E  I  C  *  R  E  E  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25698" stop="26087"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFYAVDGNAEQDPIKLKQFVLNKASNVSKELSTVIDRTTLDSISIAQLKLRVPWNVLFGNILKNNVCVVGDALHPMTPDLGQGGCSALEDSVVIAKCLAEALIKPITEQEDDESMRIRKGLEKYAKERR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25198" stop="25470"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGFRNLSILGALQLEALLSIPKNMVISLSSTHILEVEFGLDFFLVMRRVYTGFAHSHHLLFIVSHLLHTVSFEDLLFEGYWCWLESLTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="38168" PGL_stop="37583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38168" e_stop="37583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="38168" e_stop="37583" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38168" stop="37583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342484" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGTATCATCCAGGGAAGGCCAATGTTGTGGCCGATGCTTTGAGTAGGAAGACTCATAGCATGGGGAGTCTTGCATCTCTTAGTGTTGAGGAGATACCATTGGCTAGAGATGTTCAATTGTTAGCTAACAGTCTTGTCCGATTACAGATCTTAGAAGAGAGTGATAGGATGATTGCTTTTATTGAGGCTCGATCTTCTTTAGTCGAGCAGATTCGTGCACCAGTTTGATGATGAAAAATTATGTCTCATTCGAGACAAAGTATTGAGAGGGGAAGCTAAAGAGGTTGTCCTTGATTCTGATGGTGTCTTGAGGATCGGAGGCAGGATTTGTGTGCCCAAGACAGGCAATTTGATTAGATTGATCCTTGAGGAGGCCCATTGTTCTCGATATTCTATCCATCCGGGTGCGGCGAAGATGTATCATGATCTGAGTCAGCATTACTGGTGGTGTGGGATGAAGAGAGATATTTCAGACTTTGTTTCGAGGTGTTTGACTTGCCAGCAGGTCAAGTGTGAGCACCAGCGGCCCAGGGGTGTATCTCAGAGGATGCCTATTCCTACTTGGAAGTGGGAGCGGATTACTA</gDNA_template>
            <first_frame> F  C  I  I  Q  G  R  P  M  L  W  P  M  L  *  V  G  R  L  I  A  W  G  V  L  H  L  L  V  L  R  R  Y  H  W  L  E  M  F  N  C  *  L  T  V  L  S  D  Y  R  S  *  K  R  V  I  G  *  L  L  L  L  R  L  D  L  L  *  S  S  R  F  V  H  Q  F  D  D  E  K  L  C  L  I  R  D  K  V  L  R  G  E  A  K  E  V  V  L  D  S  D  G  V  L  R  I  G  G  R  I  C  V  P  K  T  G  N  L  I  R  L  I  L  E  E  A  H  C  S  R  Y  S  I  H  P  G  A  A  K  M  Y  H  D  L  S  Q  H  Y  W  W  C  G  M  K  R  D  I  S  D  F  V  S  R  C  L  T  C  Q  Q  V  K  C  E  H  Q  R  P  R  G  V  S  Q  R  M  P  I  P  T  W  K  W  E  R  I  T  </first_frame>
            <second_frame>  S  V  S  S  R  E  G  Q  C  C  G  R  C  F  E  *  E  D  S  *  H  G  E  S  C  I  S  *  C  *  G  D  T  I  G  *  R  C  S  I  V  S  *  Q  S  C  P  I  T  D  L  R  R  E  *  *  D  D  C  F  Y  *  G  S  I  F  F  S  R  A  D  S  C  T  S  L  M  M  K  N  Y  V  S  F  E  T  K  Y  *  E  G  K  L  K  R  L  S  L  I  L  M  V  S  *  G  S  E  A  G  F  V  C  P  R  Q  A  I  *  L  D  *  S  L  R  R  P  I  V  L  D  I  L  S  I  R  V  R  R  R  C  I  M  I  *  V  S  I  T  G  G  V  G  *  R  E  I  F  Q  T  L  F  R  G  V  *  L  A  S  R  S  S  V  S  T  S  G  P  G  V  Y  L  R  G  C  L  F  L  L  G  S  G  S  G  L  L </second_frame>
            <third_frame>   L  Y  H  P  G  K  A  N  V  V  A  D  A  L  S  R  K  T  H  S  M  G  S  L  A  S  L  S  V  E  E  I  P  L  A  R  D  V  Q  L  L  A  N  S  L  V  R  L  Q  I  L  E  E  S  D  R  M  I  A  F  I  E  A  R  S  S  L  V  E  Q  I  R  A  P  V  *  *  *  K  I  M  S  H  S  R  Q  S  I  E  R  G  S  *  R  G  C  P  *  F  *  W  C  L  E  D  R  R  Q  D  L  C  A  Q  D  R  Q  F  D  *  I  D  P  *  G  G  P  L  F  S  I  F  Y  P  S  G  C  G  E  D  V  S  *  S  E  S  A  L  L  V  V  W  D  E  E  R  Y  F  R  L  C  F  E  V  F  D  L  P  A  G  Q  V  *  A  P  A  A  Q  G  C  I  S  E  D  A  Y  S  Y  L  E  V  G  A  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37964" stop="37584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRFVHQFDDEKLCLIRDKVLRGEAKEVVLDSDGVLRIGGRICVPKTGNLIRLILEEAHCSRYSIHPGAAKMYHDLSQHYWWCGMKRDISDFVSRCLTCQQVKCEHQRPRGVSQRMPIPTWKWERIT</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38166" stop="37939"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYHPGKANVVADALSRKTHSMGSLASLSVEEIPLARDVQLLANSLVRLQILEESDRMIAFIEARSSLVEQIRAPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40021" PGL_stop="40537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40021" e_stop="40537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="40021" e_stop="40537" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40021" stop="40537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGGTACCTCTACCCCCACTTTGCTGAGCTGCAACACCACTACTAGAAACTCTGTCACCTCTACCTGACTGAACTCTGCCACGACCTCTACCCTGTGGAGCTGGTGGTCTAGTCTGGAATGAAGAATTAGGTCGAGGACCACCACGACCCCTTTGAGAAGTACACTGCCTCATTAGATGATCGGGATCTCCACAAGTAAAACAAAATCTCTGACCTGGGAACTGCTGTGTGGACCCTGAAAACCCACTATAATTGCCTCGCCCTGTAGGTCGCTGCTGTGAACCATACGAGCCTTGAACTGGTTCATAAGAACCCCTAGATGTCTGGCCAGCCTCAAATGTCGGCATAGATGCATGAATAGGTCCTCGCTGCTGAAAAGAACCACTCACTCTCTGTGATCCCCTACCTCCAGATGAGGCACCCTGAAACTGACCTGATATACGAGCTCTTTTAGGGTCCCCAAACTCCTCTCTCTCCATCAATTCCGCCTATTTGGCGGCGCTCACAATGGACTGG</gDNA_template>
            <first_frame> G  G  T  S  T  P  T  L  L  S  C  N  T  T  T  R  N  S  V  T  S  T  *  L  N  S  A  T  T  S  T  L  W  S  W  W  S  S  L  E  *  R  I  R  S  R  T  T  T  T  P  L  R  S  T  L  P  H  *  M  I  G  I  S  T  S  K  T  K  S  L  T  W  E  L  L  C  G  P  *  K  P  T  I  I  A  S  P  C  R  S  L  L  *  T  I  R  A  L  N  W  F  I  R  T  P  R  C  L  A  S  L  K  C  R  H  R  C  M  N  R  S  S  L  L  K  R  T  T  H  S  L  *  S  P  T  S  R  *  G  T  L  K  L  T  *  Y  T  S  S  F  R  V  P  K  L  L  S  L  H  Q  F  R  L  F  G  G  A  H  N  G  L  </first_frame>
            <second_frame>  V  V  P  L  P  P  L  C  *  A  A  T  P  L  L  E  T  L  S  P  L  P  D  *  T  L  P  R  P  L  P  C  G  A  G  G  L  V  W  N  E  E  L  G  R  G  P  P  R  P  L  *  E  V  H  C  L  I  R  *  S  G  S  P  Q  V  K  Q  N  L  *  P  G  N  C  C  V  D  P  E  N  P  L  *  L  P  R  P  V  G  R  C  C  E  P  Y  E  P  *  T  G  S  *  E  P  L  D  V  W  P  A  S  N  V  G  I  D  A  *  I  G  P  R  C  *  K  E  P  L  T  L  C  D  P  L  P  P  D  E  A  P  *  N  *  P  D  I  R  A  L  L  G  S  P  N  S  S  L  S  I  N  S  A  Y  L  A  A  L  T  M  D  W </second_frame>
            <third_frame>   W  Y  L  Y  P  H  F  A  E  L  Q  H  H  Y  *  K  L  C  H  L  Y  L  T  E  L  C  H  D  L  Y  P  V  E  L  V  V  *  S  G  M  K  N  *  V  E  D  H  H  D  P  F  E  K  Y  T  A  S  L  D  D  R  D  L  H  K  *  N  K  I  S  D  L  G  T  A  V  W  T  L  K  T  H  Y  N  C  L  A  L  *  V  A  A  V  N  H  T  S  L  E  L  V  H  K  N  P  *  M  S  G  Q  P  Q  M  S  A  *  M  H  E  *  V  L  A  A  E  K  N  H  S  L  S  V  I  P  Y  L  Q  M  R  H  P  E  T  D  L  I  Y  E  L  F  *  G  P  Q  T  P  L  S  P  S  I  P  P  I  W  R  R  S  Q  W  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0161H10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40727" PGL_stop="40299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40727" e_stop="40299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="40727" e_stop="40299" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40727" stop="40299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGAGGTTTGAGAGTCTGAGACAGGATGGTTTATCGGTTACAGAGTATGAGGCGCGTTTTTTCCAGTTATCTAGGCATGCGTTGGCCATTATTACAAATGAGACAGAGAGGATCCGCATATTTGTGAGGGGATTGACTTTATCTATCAGGTCAGCTGTGTTTCGGACATCTAGGGAGGGGACTTCTTTCCAGTCCATTGTGAGCGCCGCCAAATAGGCGGAATTGATGGAGAGAGAGGAGTTTGGGGACCCTAAAAGAGCTCGTATATCAGGTCAGTTTCAGGGTGCCTCATCTGGAGGTAGGGGATCACAGAGAGTGAGTGGTTCTTTTCAGCAGCGAGGACCTATTCATGCATCTATGCCGACATTTGAGGCTGGCCAGACATCTAGGGGTTCTTATGAACCAGTTCAAGGCTCGTATGGTTCAC</gDNA_template>
            <first_frame> A  *  G  L  R  V  *  D  R  M  V  Y  R  L  Q  S  M  R  R  V  F  S  S  Y  L  G  M  R  W  P  L  L  Q  M  R  Q  R  G  S  A  Y  L  *  G  D  *  L  Y  L  S  G  Q  L  C  F  G  H  L  G  R  G  L  L  S  S  P  L  *  A  P  P  N  R  R  N  *  W  R  E  R  S  L  G  T  L  K  E  L  V  Y  Q  V  S  F  R  V  P  H  L  E  V  G  D  H  R  E  *  V  V  L  F  S  S  E  D  L  F  M  H  L  C  R  H  L  R  L  A  R  H  L  G  V  L  M  N  Q  F  K  A  R  M  V  H </first_frame>
            <second_frame>  L  E  V  *  E  S  E  T  G  W  F  I  G  Y  R  V  *  G  A  F  F  P  V  I  *  A  C  V  G  H  Y  Y  K  *  D  R  E  D  P  H  I  C  E  G  I  D  F  I  Y  Q  V  S  C  V  S  D  I  *  G  G  D  F  F  P  V  H  C  E  R  R  Q  I  G  G  I  D  G  E  R  G  V  W  G  P  *  K  S  S  Y  I  R  S  V  S  G  C  L  I  W  R  *  G  I  T  E  S  E  W  F  F  S  A  A  R  T  Y  S  C  I  Y  A  D  I  *  G  W  P  D  I  *  G  F  L  *  T  S  S  R  L  V  W  F   </second_frame>
            <third_frame>   L  R  F  E  S  L  R  Q  D  G  L  S  V  T  E  Y  E  A  R  F  F  Q  L  S  R  H  A  L  A  I  I  T  N  E  T  E  R  I  R  I  F  V  R  G  L  T  L  S  I  R  S  A  V  F  R  T  S  R  E  G  T  S  F  Q  S  I  V  S  A  A  K  *  A  E  L  M  E  R  E  E  F  G  D  P  K  R  A  R  I  S  G  Q  F  Q  G  A  S  S  G  G  R  G  S  Q  R  V  S  G  S  F  Q  Q  R  G  P  I  H  A  S  M  P  T  F  E  A  G  Q  T  S  R  G  S  Y  E  P  V  Q  G  S  Y  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRFESLRQDGLSVTEYEARFFQLSRHALAIITNETERIRIFVRGLTLSIRSAVFRTSREGTSFQSIVSAAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40509" stop="40300"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AELMEREEFGDPKRARISGQFQGASSGGRGSQRVSGSFQQRGPIHASMPTFEAGQTSRGSYEPVQGSYGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41146" PGL_stop="41448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41146" e_stop="41448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="41146" e_stop="41448" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41146" stop="41448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTCTGAGCCCCCTCTCTAGTACGAGAGTCATGTGGTGTGGTAGTCGCACCACCACCCTGAGAAAATCCCTCTAGCACACTTAACACCCTCAATAGTGTATCTTGAAGCAAAGGTGTGACTACAGGATCTGAAGGAACCTGGTCCTCCCTACCATCAATCTGAGGTTCTGTAGAGACCTCTCTAGCACGACCTCTCACTGGTGCTGCTCCACGTCCACGACCTCTGGCTACTGTCGTACTACTAGCACGACCTCTAGCTCGAGATCTACCCCTACCCCTAGCTGGGGCCTCAACAACTGC</gDNA_template>
            <first_frame> W  G  L  S  P  L  S  S  T  R  V  M  W  C  G  S  R  T  T  T  L  R  K  S  L  *  H  T  *  H  P  Q  *  C  I  L  K  Q  R  C  D  Y  R  I  *  R  N  L  V  L  P  T  I  N  L  R  F  C  R  D  L  S  S  T  T  S  H  W  C  C  S  T  S  T  T  S  G  Y  C  R  T  T  S  T  T  S  S  S  R  S  T  P  T  P  S  W  G  L  N  N  C </first_frame>
            <second_frame>  G  V  *  A  P  S  L  V  R  E  S  C  G  V  V  V  A  P  P  P  *  E  N  P  S  S  T  L  N  T  L  N  S  V  S  *  S  K  G  V  T  T  G  S  E  G  T  W  S  S  L  P  S  I  *  G  S  V  E  T  S  L  A  R  P  L  T  G  A  A  P  R  P  R  P  L  A  T  V  V  L  L  A  R  P  L  A  R  D  L  P  L  P  L  A  G  A  S  T  T   </second_frame>
            <third_frame>   G  S  E  P  P  L  *  Y  E  S  H  V  V  W  *  S  H  H  H  P  E  K  I  P  L  A  H  L  T  P  S  I  V  Y  L  E  A  K  V  *  L  Q  D  L  K  E  P  G  P  P  Y  H  Q  S  E  V  L  *  R  P  L  *  H  D  L  S  L  V  L  L  H  V  H  D  L  W  L  L  S  Y  Y  *  H  D  L  *  L  E  I  Y  P  Y  P  *  L  G  P  Q  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0161H10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="44808" PGL_stop="47813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44808" e_stop="45006"/>
            <exon e_start="45427" e_stop="45994"/>
            <exon e_start="46234" e_stop="46251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.966" e_score="0.889"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.912"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="44808" e_stop="45006" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.966">
            <gDNA_intron_boundary i_start="45007" i_stop="45426" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="45427" e_stop="45994" e_length="568"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45995" i_stop="46233" i_length="239"/>
          </intron>
          <exon e_serial="3" e_score="0.722">
            <gDNA_exon_boundary e_start="46234" e_stop="46251" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44808" stop="45006"/>
              <exon start="45427" stop="45994"/>
              <exon start="46234" stop="46251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333723" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACACGTTCCTTGCTGAAAATGGCTATAAAATGAAGTCAAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACATTCACATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATTTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGAAGGTCATAATTCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCAC : ATTAAAGAAAAGAAAGAA</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  N  E  V  K  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  K  K  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  Q  F  V  E  V  K  E  V  *   : E  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  I  H  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  *  R  S  *  F  M  I  S  L  L  K  V  *  I  Y  L  M  P  M  L  E  I  L  S  F  P  L  I  L  T :   L  K  K  R  K   </first_frame>
            <second_frame>  N  R  F  H  *  T  D  T  F  L  A  E  N  G  Y  K  M  K  S  N  F  *  F  F  N  H  *  K  F  F  L  S  L  H  L  F  F  S  Q  K  K  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  :  K  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  F  T  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  F  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  E  G  H  N  S  *  S  P  C  *  R  Y  K  F  I  *  C  L  C  *  K  Y  *  V  F  P  *  Y  S   : H  *  R  K  E  R  </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  R  S  L  L  K  M  A  I  K  *  S  Q  I  F  D  F  L  I  T  E  N  F  F  F  L  C  I  Y  F  S  L  K  K  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  S  V  R  *  S  *  R  S  L  R :   K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  H  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  K  V  I  I  H  D  L  L  A  E  G  I  N  L  F  N  A  Y  V  R  N  I  K  F  S  L  N  T  H  :  I  K  E  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44996" stop="45006"/>
                    <exon start="45427" stop="45994"/>
                    <exon start="46234" stop="46251"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLRKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSHFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELKVIIHDLLAEGINLFNAYVRNIKFSLNTHIKEKKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46134" e_stop="46842"/>
            <exon e_start="47779" e_stop="47813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.975"/>
          <exon-only e_score="0.657"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="46134" e_stop="46842" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46843" i_stop="47778" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="0.657">
            <gDNA_exon_boundary e_start="47779" e_stop="47813" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46134" stop="46842"/>
              <exon start="47779" stop="47813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATAAATGCCGGGGTCCTAAGAAGAACAAGAAAAAGAAGGATCAAACAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATGTAGAAAAAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACTTTAGTGATGACCTTTTCAAACTCAATGTAATAGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA : AGAAGAACCAAAAGAGAATGAACAAAATGAAGAAA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  I  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  T  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  *  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  V  E  K  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  T  F  S  N  S  M  *  *  Q  L  I  *  I  K  I  L  L  L  L   : K  K  N  Q  K  R  M  N  K  M  K  K </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  S  *  E  E  Q  E  K  E  G  S  N  K  L  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  M  *  K  K  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  L  *  *  *  P  F  Q  T  Q  C  N  S  S  *  Y  E  *  R  F  C  F  F  L  :  R  R  T  K  R  E  *  T  K  *  R   </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  K  C  R  G  P  K  K  N  K  K  K  K  D  Q  T  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  L  A  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  C  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  F  S  D  D  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S  * :   E  E  P  K  E  N  E  Q  N  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46136" stop="47779"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKRSRGNSAISGVNFVEEDSTKLKKRKKASGPKSNPPKKKFNGNCFNCGKHGHRANKCRGPKKNKKKKDQTNLAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTLALTDEKLFMANSAVAKVEGTGKVLLKMTSGKVVTLNRVSYVPECRKNLVSIPVLTKNGFKCVFVSDKVVVSKNDMYVGKGYFSDDLFKLNVIAVDMNKDFASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44826" e_stop="45938"/>
            <exon e_start="46011" e_stop="46122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.944" e_score="0.954"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="44826" e_stop="45938" e_length="1113"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.944">
            <gDNA_intron_boundary i_start="45939" i_stop="46010" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="46011" e_stop="46122" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44826" stop="45938"/>
              <exon start="46011" stop="46122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACACGTTCCTTGCTGAAAATGGCTATAAAATGAAGTCAAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAATAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAATAGTTTCTGTATTTAAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACATTCACATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATTTGTACAATGTGTACAACAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGAAGGTCATAATTCATGATCTCCTTGCTGAAG : GATTAATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  N  E  V  K  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  K  K  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  I  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  *  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  I  H  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  T  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  *  R  S  *  F  M  I  S  L  L  K  :  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  D  T  F  L  A  E  N  G  Y  K  M  K  S  N  F  *  F  F  N  H  *  K  F  F  L  S  L  H  L  F  F  S  Q  K  K  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  *  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  F  T  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  F  V  Q  C  V  Q  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  E  G  H  N  S  *  S  P  C  *  R :   I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   T  R  S  L  L  K  M  A  I  K  *  S  Q  I  F  D  F  L  I  T  E  N  F  F  F  L  C  I  Y  F  S  L  K  K  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  I  V  S  V  F  K  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  H  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  N  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  K  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45398" stop="45938"/>
                    <exon start="46011" stop="46120"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILNLSAICDRKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSHFLCKNYILSGLQDDLYNVYNNAKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELKVIIHDLLAEGLIVNDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="54820" PGL_stop="55592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54820" e_stop="55592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="54820" e_stop="55592" e_length="773"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54820" stop="55592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324524" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTTTCACACAGAGCTTTTTCCTTGTACCAAAATTGGAAAATCTCAAATTGGGTGCCAATGATCTTCTCAAAGGAGTTTTACCAAAGATCCACCCGAGCAACACTACTCTATTGGAGTTGGATATTTCTAACACAGGAATCTCTGGTGAGCTGACTGATTCAATTGGCACCTTCAGTTCCTTGAATATCTTGAACCTCAAAGGATGTCGATTCTCTGGTTCCATTCCTGATTCCATTGGCAATCTTACACAAATTAGGTATTTGGATTTCAGTTATAATCATTTCACCGGCCATATTCCTTCCACAATCTCTCAATTGAAGCACCTCACATATCTAAGTCTTTCATCCAACTCCTTTTCAGGTGAACTTCCCGATATTTTTTCTAACCTCCAAGAGTTACGTTATTTATATCTTTCTAACAACAGCTTCATCGGTTCGTTTCCTTCTAAAATTGTAAGCTTGACACATCTTGAATGCTTAGACTTGTCCTACAACTTAATGAATGGGACCATACCATCTTCGGTGTTTAGCCTCCCTTTGTTAGGTCTGTTGTGGCTCAATAATAATCGATTTAGTGGACTACCCGATGAGCTCAAAACAAACCCAACATTGGTACGCCTGTTTTTAAGCCATAATCAACTCAGTTGTTCTTTTCCTCAATCACTTTCGAATCTCACAAACCTTTCTATCCTTGACCTTTCATCGAATAGCATCACTGTCGATGAGGGAAATCAAATCACTTTCCCTAACCTAAAAGTTTTGATGTTATCAT</gDNA_template>
            <first_frame> Y  F  H  T  E  L  F  P  C  T  K  I  G  K  S  Q  I  G  C  Q  *  S  S  Q  R  S  F  T  K  D  P  P  E  Q  H  Y  S  I  G  V  G  Y  F  *  H  R  N  L  W  *  A  D  *  F  N  W  H  L  Q  F  L  E  Y  L  E  P  Q  R  M  S  I  L  W  F  H  S  *  F  H  W  Q  S  Y  T  N  *  V  F  G  F  Q  L  *  S  F  H  R  P  Y  S  F  H  N  L  S  I  E  A  P  H  I  S  K  S  F  I  Q  L  L  F  R  *  T  S  R  Y  F  F  *  P  P  R  V  T  L  F  I  S  F  *  Q  Q  L  H  R  F  V  S  F  *  N  C  K  L  D  T  S  *  M  L  R  L  V  L  Q  L  N  E  W  D  H  T  I  F  G  V  *  P  P  F  V  R  S  V  V  A  Q  *  *  S  I  *  W  T  T  R  *  A  Q  N  K  P  N  I  G  T  P  V  F  K  P  *  S  T  Q  L  F  F  S  S  I  T  F  E  S  H  K  P  F  Y  P  *  P  F  I  E  *  H  H  C  R  *  G  K  S  N  H  F  P  *  P  K  S  F  D  V  I   </first_frame>
            <second_frame>  T  F  T  Q  S  F  F  L  V  P  K  L  E  N  L  K  L  G  A  N  D  L  L  K  G  V  L  P  K  I  H  P  S  N  T  T  L  L  E  L  D  I  S  N  T  G  I  S  G  E  L  T  D  S  I  G  T  F  S  S  L  N  I  L  N  L  K  G  C  R  F  S  G  S  I  P  D  S  I  G  N  L  T  Q  I  R  Y  L  D  F  S  Y  N  H  F  T  G  H  I  P  S  T  I  S  Q  L  K  H  L  T  Y  L  S  L  S  S  N  S  F  S  G  E  L  P  D  I  F  S  N  L  Q  E  L  R  Y  L  Y  L  S  N  N  S  F  I  G  S  F  P  S  K  I  V  S  L  T  H  L  E  C  L  D  L  S  Y  N  L  M  N  G  T  I  P  S  S  V  F  S  L  P  L  L  G  L  L  W  L  N  N  N  R  F  S  G  L  P  D  E  L  K  T  N  P  T  L  V  R  L  F  L  S  H  N  Q  L  S  C  S  F  P  Q  S  L  S  N  L  T  N  L  S  I  L  D  L  S  S  N  S  I  T  V  D  E  G  N  Q  I  T  F  P  N  L  K  V  L  M  L  S  </second_frame>
            <third_frame>   L  S  H  R  A  F  S  L  Y  Q  N  W  K  I  S  N  W  V  P  M  I  F  S  K  E  F  Y  Q  R  S  T  R  A  T  L  L  Y  W  S  W  I  F  L  T  Q  E  S  L  V  S  *  L  I  Q  L  A  P  S  V  P  *  I  S  *  T  S  K  D  V  D  S  L  V  P  F  L  I  P  L  A  I  L  H  K  L  G  I  W  I  S  V  I  I  I  S  P  A  I  F  L  P  Q  S  L  N  *  S  T  S  H  I  *  V  F  H  P  T  P  F  Q  V  N  F  P  I  F  F  L  T  S  K  S  Y  V  I  Y  I  F  L  T  T  A  S  S  V  R  F  L  L  K  L  *  A  *  H  I  L  N  A  *  T  C  P  T  T  *  *  M  G  P  Y  H  L  R  C  L  A  S  L  C  *  V  C  C  G  S  I  I  I  D  L  V  D  Y  P  M  S  S  K  Q  T  Q  H  W  Y  A  C  F  *  A  I  I  N  S  V  V  L  F  L  N  H  F  R  I  S  Q  T  F  L  S  L  T  F  H  R  I  A  S  L  S  M  R  E  I  K  S  L  S  L  T  *  K  F  *  C  Y  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54821" stop="55591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFTQSFFLVPKLENLKLGANDLLKGVLPKIHPSNTTLLELDISNTGISGELTDSIGTFSSLNILNLKGCRFSGSIPDSIGNLTQIRYLDFSYNHFTGHIPSTISQLKHLTYLSLSSNSFSGELPDIFSNLQELRYLYLSNNSFIGSFPSKIVSLTHLECLDLSYNLMNGTIPSSVFSLPLLGLLWLNNNRFSGLPDELKTNPTLVRLFLSHNQLSCSFPQSLSNLTNLSILDLSSNSITVDEGNQITFPNLKVLMLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56348" PGL_stop="57146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56348" e_stop="57146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="56348" e_stop="57146" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56348" stop="57146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTGTACAGATCGTATGAGGATTCTGTGAGTTTGGTGATCAAAGGCCAGGACATTGAGCTAGAAAGAATCAGCACAATTATGACAACCATAGACCTCTCGAGCAACCATTTTGAAGGTGTCATTCCAAAAACACTAAAGGATCTCAGCTCACTTTGGCTACTCAATTTATCCCATAACAATCTCATCGGTCATATTCCAATGGAATTGGGGCAATTGAATAAGCTTGAAGCGTTATATCTCTCCTGGAATCGGCTCACAGGAAAGATTCCAAGGGAATTGATAACAATGAAGTTTCTAGCAGTCTTAAACCTCTCTCAGAATCTTCTTATTGGATCGATTCCTCAAGGTCTACAATTCAACACATTTGAAAATGACTCGTATGGCGGTAACCTTGATCTATGTGGTCCTCCTTTGTCAAAGCAATGTGGAACGAGTGATTCATCCCATGTTCCTCAACCATTGGAGTCTGAAGACGAGTCATATTTTTTTAGTGGATTTACGTGGGAATCAGTAGTCATAGGCTACAGCTTTGGACTAGTTGTTGGAACTGTTGTGTGGAGCCTCGTGTTTAAATACCGTAAGCCAGAATGGTTTGTCGAATTTTTTGAAGGCATTTATCCCAAGAAAATGAGAAGGTCAATGAAGAGAGCTCGGAGACGACGGACTTAATGGAAGAATGTAAGAGTGAACTTTTCTGTTTTTTAGTTATATTTTTGTTGTTTGTATATATGCTTGATAACAATTAATTGCATGTGTTATATTGTGAATTTCCACTGAATTAAAATAAGTGTTCTTG</gDNA_template>
            <first_frame> S  L  Y  R  S  Y  E  D  S  V  S  L  V  I  K  G  Q  D  I  E  L  E  R  I  S  T  I  M  T  T  I  D  L  S  S  N  H  F  E  G  V  I  P  K  T  L  K  D  L  S  S  L  W  L  L  N  L  S  H  N  N  L  I  G  H  I  P  M  E  L  G  Q  L  N  K  L  E  A  L  Y  L  S  W  N  R  L  T  G  K  I  P  R  E  L  I  T  M  K  F  L  A  V  L  N  L  S  Q  N  L  L  I  G  S  I  P  Q  G  L  Q  F  N  T  F  E  N  D  S  Y  G  G  N  L  D  L  C  G  P  P  L  S  K  Q  C  G  T  S  D  S  S  H  V  P  Q  P  L  E  S  E  D  E  S  Y  F  F  S  G  F  T  W  E  S  V  V  I  G  Y  S  F  G  L  V  V  G  T  V  V  W  S  L  V  F  K  Y  R  K  P  E  W  F  V  E  F  F  E  G  I  Y  P  K  K  M  R  R  S  M  K  R  A  R  R  R  R  T  *  W  K  N  V  R  V  N  F  S  V  F  *  L  Y  F  C  C  L  Y  I  C  L  I  T  I  N  C  M  C  Y  I  V  N  F  H  *  I  K  I  S  V  L  </first_frame>
            <second_frame>  H  C  T  D  R  M  R  I  L  *  V  W  *  S  K  A  R  T  L  S  *  K  E  S  A  Q  L  *  Q  P  *  T  S  R  A  T  I  L  K  V  S  F  Q  K  H  *  R  I  S  A  H  F  G  Y  S  I  Y  P  I  T  I  S  S  V  I  F  Q  W  N  W  G  N  *  I  S  L  K  R  Y  I  S  P  G  I  G  S  Q  E  R  F  Q  G  N  *  *  Q  *  S  F  *  Q  S  *  T  S  L  R  I  F  L  L  D  R  F  L  K  V  Y  N  S  T  H  L  K  M  T  R  M  A  V  T  L  I  Y  V  V  L  L  C  Q  S  N  V  E  R  V  I  H  P  M  F  L  N  H  W  S  L  K  T  S  H  I  F  L  V  D  L  R  G  N  Q  *  S  *  A  T  A  L  D  *  L  L  E  L  L  C  G  A  S  C  L  N  T  V  S  Q  N  G  L  S  N  F  L  K  A  F  I  P  R  K  *  E  G  Q  *  R  E  L  G  D  D  G  L  N  G  R  M  *  E  *  T  F  L  F  F  S  Y  I  F  V  V  C  I  Y  A  *  *  Q  L  I  A  C  V  I  L  *  I  S  T  E  L  K  *  V  F  L </second_frame>
            <third_frame>   I  V  Q  I  V  *  G  F  C  E  F  G  D  Q  R  P  G  H  *  A  R  K  N  Q  H  N  Y  D  N  H  R  P  L  E  Q  P  F  *  R  C  H  S  K  N  T  K  G  S  Q  L  T  L  A  T  Q  F  I  P  *  Q  S  H  R  S  Y  S  N  G  I  G  A  I  E  *  A  *  S  V  I  S  L  L  E  S  A  H  R  K  D  S  K  G  I  D  N  N  E  V  S  S  S  L  K  P  L  S  E  S  S  Y  W  I  D  S  S  R  S  T  I  Q  H  I  *  K  *  L  V  W  R  *  P  *  S  M  W  S  S  F  V  K  A  M  W  N  E  *  F  I  P  C  S  S  T  I  G  V  *  R  R  V  I  F  F  *  W  I  Y  V  G  I  S  S  H  R  L  Q  L  W  T  S  C  W  N  C  C  V  E  P  R  V  *  I  P  *  A  R  M  V  C  R  I  F  *  R  H  L  S  Q  E  N  E  K  V  N  E  E  S  S  E  T  T  D  L  M  E  E  C  K  S  E  L  F  C  F  L  V  I  F  L  L  F  V  Y  M  L  D  N  N  *  L  H  V  L  Y  C  E  F  P  L  N  *  N  K  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56348" stop="57019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYRSYEDSVSLVIKGQDIELERISTIMTTIDLSSNHFEGVIPKTLKDLSSLWLLNLSHNNLIGHIPMELGQLNKLEALYLSWNRLTGKIPRELITMKFLAVLNLSQNLLIGSIPQGLQFNTFENDSYGGNLDLCGPPLSKQCGTSDSSHVPQPLESEDESYFFSGFTWESVVIGYSFGLVVGTVVWSLVFKYRKPEWFVEFFEGIYPKKMRRSMKRARRRRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="57834" PGL_stop="57189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57834" e_stop="57770"/>
            <exon e_start="57687" e_stop="57189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.950" e_score="0.985"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="57834" e_stop="57770" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.950">
            <gDNA_intron_boundary i_start="57769" i_stop="57688" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="57687" e_stop="57189" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57834" stop="57770"/>
              <exon start="57687" stop="57189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTAGTAACCATTTTATCAATGAAATTGATTTTGCTACAATCCATGCATACACTGATCAATG : ATTATCTGGACAAAGTGATGAAGCACAATTGGTGTGGATGGAAAAGTGGATAAGAAGTCATTGGGAAGATGCAAGAAATATATTGAAGAAACCTTTAGTGCTTGCTGAATTTGGAAAGTCTAGTAGATCAGGTGAAGGATCAAGAGATATATTTATGAGTAGTGTGTACAGAAATGTGTATAATTTGGCAAAAGAAGGTGGAACAATGGGAGGAAGTTTAGTATGGCAACTAATGGCACATGGAATGGAGAATTATGATGATGGTTATTCTATTGTTTTGGGACTAAATCCTTCAACTACACAAATTATCTCAAACCAAGCTCATATCATGACTGCTTTGGCTCATTCTCTCAATTCATGAGTGAAGACATCATAATAATCAATTTATAATCTATCATTTTTAGTATTATTAATTTGAGATGATATTACCAAACATGTTCAAGTTGATTAAACACAAGAATGTAATTGAATAAATTGTTTTAGTAAAAAGGAAAGTTAT</gDNA_template>
            <first_frame> F  I  S  N  H  F  I  N  E  I  D  F  A  T  I  H  A  Y  T  D  Q  * :   L  S  G  Q  S  D  E  A  Q  L  V  W  M  E  K  W  I  R  S  H  W  E  D  A  R  N  I  L  K  K  P  L  V  L  A  E  F  G  K  S  S  R  S  G  E  G  S  R  D  I  F  M  S  S  V  Y  R  N  V  Y  N  L  A  K  E  G  G  T  M  G  G  S  L  V  W  Q  L  M  A  H  G  M  E  N  Y  D  D  G  Y  S  I  V  L  G  L  N  P  S  T  T  Q  I  I  S  N  Q  A  H  I  M  T  A  L  A  H  S  L  N  S  *  V  K  T  S  *  *  S  I  Y  N  L  S  F  L  V  L  L  I  *  D  D  I  T  K  H  V  Q  V  D  *  T  Q  E  C  N  *  I  N  C  F  S  K  K  E  S  Y </first_frame>
            <second_frame>  S  L  V  T  I  L  S  M  K  L  I  L  L  Q  S  M  H  T  L  I  N   : D  Y  L  D  K  V  M  K  H  N  W  C  G  W  K  S  G  *  E  V  I  G  K  M  Q  E  I  Y  *  R  N  L  *  C  L  L  N  L  E  S  L  V  D  Q  V  K  D  Q  E  I  Y  L  *  V  V  C  T  E  M  C  I  I  W  Q  K  K  V  E  Q  W  E  E  V  *  Y  G  N  *  W  H  M  E  W  R  I  M  M  M  V  I  L  L  F  W  D  *  I  L  Q  L  H  K  L  S  Q  T  K  L  I  S  *  L  L  W  L  I  L  S  I  H  E  *  R  H  H  N  N  Q  F  I  I  Y  H  F  *  Y  Y  *  F  E  M  I  L  P  N  M  F  K  L  I  K  H  K  N  V  I  E  *  I  V  L  V  K  R  K  V   </second_frame>
            <third_frame>   H  *  *  P  F  Y  Q  *  N  *  F  C  Y  N  P  C  I  H  *  S  M  :  I  I  W  T  K  *  *  S  T  I  G  V  D  G  K  V  D  K  K  S  L  G  R  C  K  K  Y  I  E  E  T  F  S  A  C  *  I  W  K  V  *  *  I  R  *  R  I  K  R  Y  I  Y  E  *  C  V  Q  K  C  V  *  F  G  K  R  R  W  N  N  G  R  K  F  S  M  A  T  N  G  T  W  N  G  E  L  *  *  W  L  F  Y  C  F  G  T  K  S  F  N  Y  T  N  Y  L  K  P  S  S  Y  H  D  C  F  G  S  F  S  Q  F  M  S  E  D  I  I  I  I  N  L  *  S  I  I  F  S  I  I  N  L  R  *  Y  Y  Q  T  C  S  S  *  L  N  T  R  M  *  L  N  K  L  F  *  *  K  G  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57686" stop="57327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSGQSDEAQLVWMEKWIRSHWEDARNILKKPLVLAEFGKSSRSGEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIISNQAHIMTALAHSLNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="70153" PGL_stop="69638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70153" e_stop="70069"/>
            <exon e_start="69989" e_stop="69638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.622" acc_prob="0.941" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70153" e_stop="70069" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.622" acc_prob="0.941">
            <gDNA_intron_boundary i_start="70068" i_stop="69990" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="69989" e_stop="69638" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70153" stop="70069"/>
              <exon start="69989" stop="69638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCGAGTCGTTGCTTCTGTTTTGGAAAACCTTTGAGCCCCGGTGGTTCAAGGGGCTGTGCTGTTCTGTTATTCGTCATGTGTTG : GGTTACATTTTTCATCGCGGAGGTGTGTTTGTTGGCTGGTTCAGTTAGGAACGCGTATCATACCAAGTATAGATCATCGCTCTTGTTTAATGATCGACCTGTATCTTGTGAGACTGTGAGAAAAGGCGTTTTTGCTGCTGGAGCCGCGTTTATTTTCTTCACTAGCATAATCAATAAGTTTTACTTTATCAGTTACTCCAACGCTAAGAGTGGAGCTGGACCATATGGTGGAGAAGCTGGTGTGGGAATGGCAGCCTACAAATGAATATGATCAATCATGAAGTTCTATATGTATAATAATTTTTCAGTTTTTAGTTGTACTTGACTTCATAATTTGGTACTTTTTTTTTTT</gDNA_template>
            <first_frame> W  R  V  V  A  S  V  L  E  N  L  *  A  P  V  V  Q  G  A  V  L  F  C  Y  S  S  C  V   : G  L  H  F  S  S  R  R  C  V  C  W  L  V  Q  L  G  T  R  I  I  P  S  I  D  H  R  S  C  L  M  I  D  L  Y  L  V  R  L  *  E  K  A  F  L  L  L  E  P  R  L  F  S  S  L  A  *  S  I  S  F  T  L  S  V  T  P  T  L  R  V  E  L  D  H  M  V  E  K  L  V  W  E  W  Q  P  T  N  E  Y  D  Q  S  *  S  S  I  C  I  I  I  F  Q  F  L  V  V  L  D  F  I  I  W  Y  F  F  F   </first_frame>
            <second_frame>  G  E  S  L  L  L  F  W  K  T  F  E  P  R  W  F  K  G  L  C  C  S  V  I  R  H  V  L  :  G  Y  I  F  H  R  G  G  V  F  V  G  W  F  S  *  E  R  V  S  Y  Q  V  *  I  I  A  L  V  *  *  S  T  C  I  L  *  D  C  E  K  R  R  F  C  C  W  S  R  V  Y  F  L  H  *  H  N  Q  *  V  L  L  Y  Q  L  L  Q  R  *  E  W  S  W  T  I  W  W  R  S  W  C  G  N  G  S  L  Q  M  N  M  I  N  H  E  V  L  Y  V  *  *  F  F  S  F  *  L  Y  L  T  S  *  F  G  T  F  F  F  </second_frame>
            <third_frame>   A  S  R  C  F  C  F  G  K  P  L  S  P  G  G  S  R  G  C  A  V  L  L  F  V  M  C  W :   V  T  F  F  I  A  E  V  C  L  L  A  G  S  V  R  N  A  Y  H  T  K  Y  R  S  S  L  L  F  N  D  R  P  V  S  C  E  T  V  R  K  G  V  F  A  A  G  A  A  F  I  F  F  T  S  I  I  N  K  F  Y  F  I  S  Y  S  N  A  K  S  G  A  G  P  Y  G  G  E  A  G  V  G  M  A  A  Y  K  *  I  *  S  I  M  K  F  Y  M  Y  N  N  F  S  V  F  S  C  T  *  L  H  N  L  V  L  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70151" stop="70069"/>
                    <exon start="69989" stop="69725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRCFCFGKPLSPGGSRGCAVLLFVMCWVTFFIAEVCLLAGSVRNAYHTKYRSSLLFNDRPVSCETVRKGVFAAGAAFIFFTSIINKFYFISYSNAKSGAGPYGGEAGVGMAAYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="76356" PGL_stop="79542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76356" e_stop="76606"/>
            <exon e_start="77403" e_stop="77674"/>
            <exon e_start="78456" e_stop="79542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76356" e_stop="76606" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76607" i_stop="77402" i_length="796"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77403" e_stop="77674" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.974">
            <gDNA_intron_boundary i_start="77675" i_stop="78455" i_length="781"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="78456" e_stop="79542" e_length="1087"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76356" stop="76606"/>
              <exon start="77403" stop="77674"/>
              <exon start="78456" stop="79542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTGAAAAAAAATAATATTTTTTTTATGAAAAAAAAAGAAGTTTTTTATTAATTAAAAAAAAAATTATGGGTGTTCAAGAAAAAGATCCACTTTTGCAATTAAGTTTACCACCAGGATTTAGATTTTATCCAACTGATGAAGAGCTTTTAGTTCAATATTTATGTAAGAAAGTTGCTGGACATGATTTTCCTCTACAAATTATTGGTGAAATTGATTTATACAAATTTGATCCTTGGGTTTTACCTA : GTAAGGCGACATTTGGTGAAAAAGAATGGTATTTCTTCAGTCCGAGGGATAGGAAGTATCCGAATGGATCTAGACCGAATCGAGTAGCAGGTTCGGGTTATTGGAAAGCAACGGGGACGGATAAGGTGATAACTTCGCAAGGAAGAAAAGTTGGAATTAAGAAAGCTCTTGTGTTTTATGTGGGTAAAGCTCCAAAAGGATCCAAGACGAATTGGATTATGCATGAATATAGACTTTTTGAATCTTCAAGGAAAAATAATGGAAGTTCAAAG : CTAGATGAATGGGTGCTTTGTCGAATTTATAAGAAGAATTCAAGTGGACCAAAACCTCTGATGTCTGGTTTACACAGCAGTAATGAATACAGCCATGGTTCGTCGACTTCGTCATCATCCCAATTCGATGATATGCTCGAATCATTACCAGAAATGGACGATCGATTCTCCAATTTACCGAGGTTGAACTCTCTCAAGGCCGAGAAATTCAACCTCGATCGTCTGGATTCAGCCAATTTCGATTGGGCAATTCTCGCTGGGCTCAAACCAATGCCGGAATTGGGCCCAGCAAATCAAGCTCCAGGCGTTCAGGGTCAGGCTCAGGGGCATGTCAATAACCACATTCACAGCGACAACAACAATATGAATTTTCTCAACGATGTTTACGCCCATCCTCCAAATTTCCGAGGCAACACAAAGGTTGAAAGTATTAATCTAGACGAAGAAGTTGAAAGCGGGAAAAGAAATCAACGGATTGACCAATCGAGTTACTTCCAACAGAGTCTCAATGGATTTTCCCAAGCGTATACAAACAATGTGGATCAATTCGGGATCCAATGTCCGAATCAGACGTTAAATCTCGGGTTCAAGCAGTAGAGGATACTGGAAAGTAAGAAAAGTTGTAGCTCGAAATCTGAATGCCAGTATACTGTGTATATATACAGAAGGCCTGGATTTAGATTTCCTTGGCCCAACGGATTCGAAGAAAGAGCAAGTACAGTATCATGCCAAGGAAATTAAGTCCTTCGAGGGCACGTCTGGGCAGACGTCGTGGACGTTATTTGCAAGTTCTTGCAATTGTGTCTGAAGTCATTAGGCTGAGTGGCACTTCTTATTTGCAAGTTGTGTTTGAAGTCATTAGGCCGAAGGCACGTCTGCGTGGACGATAAAATAATGTACACAAACAGGAGATATATGCAGGGGCGTGTATATTCTTTTAGGAAACTGGGCTTTTAGTTTGTTTTATTTTATGATACATTTCCAGATTTGGATGTATTTTGTAATTTTTACATTTCTGTGTAGCAAGTTAGAAGATATATAGAAAGATACTTTTAAAATACTTTTTATAATTTGTCATTTTAATTAA</gDNA_template>
            <first_frame> K  F  *  K  K  I  I  F  F  L  *  K  K  K  K  F  F  I  N  *  K  K  N  Y  G  C  S  R  K  R  S  T  F  A  I  K  F  T  T  R  I  *  I  L  S  N  *  *  R  A  F  S  S  I  F  M  *  E  S  C  W  T  *  F  S  S  T  N  Y  W  *  N  *  F  I  Q  I  *  S  L  G  F  T  * :   *  G  D  I  W  *  K  R  M  V  F  L  Q  S  E  G  *  E  V  S  E  W  I  *  T  E  S  S  S  R  F  G  L  L  E  S  N  G  D  G  *  G  D  N  F  A  R  K  K  S  W  N  *  E  S  S  C  V  L  C  G  *  S  S  K  R  I  Q  D  E  L  D  Y  A  *  I  *  T  F  *  I  F  K  E  K  *  W  K  F  K   : A  R  *  M  G  A  L  S  N  L  *  E  E  F  K  W  T  K  T  S  D  V  W  F  T  Q  Q  *  *  I  Q  P  W  F  V  D  F  V  I  I  P  I  R  *  Y  A  R  I  I  T  R  N  G  R  S  I  L  Q  F  T  E  V  E  L  S  Q  G  R  E  I  Q  P  R  S  S  G  F  S  Q  F  R  L  G  N  S  R  W  A  Q  T  N  A  G  I  G  P  S  K  S  S  S  R  R  S  G  S  G  S  G  A  C  Q  *  P  H  S  Q  R  Q  Q  Q  Y  E  F  S  Q  R  C  L  R  P  S  S  K  F  P  R  Q  H  K  G  *  K  Y  *  S  R  R  R  S  *  K  R  E  K  K  S  T  D  *  P  I  E  L  L  P  T  E  S  Q  W  I  F  P  S  V  Y  K  Q  C  G  S  I  R  D  P  M  S  E  S  D  V  K  S  R  V  Q  A  V  E  D  T  G  K  *  E  K  L  *  L  E  I  *  M  P  V  Y  C  V  Y  I  Q  K  A  W  I  *  I  S  L  A  Q  R  I  R  R  K  S  K  Y  S  I  M  P  R  K  L  S  P  S  R  A  R  L  G  R  R  R  G  R  Y  L  Q  V  L  A  I  V  S  E  V  I  R  L  S  G  T  S  Y  L  Q  V  V  F  E  V  I  R  P  K  A  R  L  R  G  R  *  N  N  V  H  K  Q  E  I  Y  A  G  A  C  I  F  F  *  E  T  G  L  L  V  C  F  I  L  *  Y  I  S  R  F  G  C  I  L  *  F  L  H  F  C  V  A  S  *  K  I  Y  R  K  I  L  L  K  Y  F  L  *  F  V  I  L  I   </first_frame>
            <second_frame>  N  F  E  K  K  *  Y  F  F  Y  E  K  K  R  S  F  L  L  I  K  K  K  I  M  G  V  Q  E  K  D  P  L  L  Q  L  S  L  P  P  G  F  R  F  Y  P  T  D  E  E  L  L  V  Q  Y  L  C  K  K  V  A  G  H  D  F  P  L  Q  I  I  G  E  I  D  L  Y  K  F  D  P  W  V  L  P   : S  K  A  T  F  G  E  K  E  W  Y  F  F  S  P  R  D  R  K  Y  P  N  G  S  R  P  N  R  V  A  G  S  G  Y  W  K  A  T  G  T  D  K  V  I  T  S  Q  G  R  K  V  G  I  K  K  A  L  V  F  Y  V  G  K  A  P  K  G  S  K  T  N  W  I  M  H  E  Y  R  L  F  E  S  S  R  K  N  N  G  S  S  K  :  L  D  E  W  V  L  C  R  I  Y  K  K  N  S  S  G  P  K  P  L  M  S  G  L  H  S  S  N  E  Y  S  H  G  S  S  T  S  S  S  S  Q  F  D  D  M  L  E  S  L  P  E  M  D  D  R  F  S  N  L  P  R  L  N  S  L  K  A  E  K  F  N  L  D  R  L  D  S  A  N  F  D  W  A  I  L  A  G  L  K  P  M  P  E  L  G  P  A  N  Q  A  P  G  V  Q  G  Q  A  Q  G  H  V  N  N  H  I  H  S  D  N  N  N  M  N  F  L  N  D  V  Y  A  H  P  P  N  F  R  G  N  T  K  V  E  S  I  N  L  D  E  E  V  E  S  G  K  R  N  Q  R  I  D  Q  S  S  Y  F  Q  Q  S  L  N  G  F  S  Q  A  Y  T  N  N  V  D  Q  F  G  I  Q  C  P  N  Q  T  L  N  L  G  F  K  Q  *  R  I  L  E  S  K  K  S  C  S  S  K  S  E  C  Q  Y  T  V  Y  I  Y  R  R  P  G  F  R  F  P  W  P  N  G  F  E  E  R  A  S  T  V  S  C  Q  G  N  *  V  L  R  G  H  V  W  A  D  V  V  D  V  I  C  K  F  L  Q  L  C  L  K  S  L  G  *  V  A  L  L  I  C  K  L  C  L  K  S  L  G  R  R  H  V  C  V  D  D  K  I  M  Y  T  N  R  R  Y  M  Q  G  R  V  Y  S  F  R  K  L  G  F  *  F  V  L  F  Y  D  T  F  P  D  L  D  V  F  C  N  F  Y  I  S  V  *  Q  V  R  R  Y  I  E  R  Y  F  *  N  T  F  Y  N  L  S  F  *  L  </second_frame>
            <third_frame>   I  L  K  K  N  N  I  F  F  M  K  K  K  E  V  F  Y  *  L  K  K  K  L  W  V  F  K  K  K  I  H  F  C  N  *  V  Y  H  Q  D  L  D  F  I  Q  L  M  K  S  F  *  F  N  I  Y  V  R  K  L  L  D  M  I  F  L  Y  K  L  L  V  K  L  I  Y  T  N  L  I  L  G  F  Y  L  :  V  R  R  H  L  V  K  K  N  G  I  S  S  V  R  G  I  G  S  I  R  M  D  L  D  R  I  E  *  Q  V  R  V  I  G  K  Q  R  G  R  I  R  *  *  L  R  K  E  E  K  L  E  L  R  K  L  L  C  F  M  W  V  K  L  Q  K  D  P  R  R  I  G  L  C  M  N  I  D  F  L  N  L  Q  G  K  I  M  E  V  Q  S :   *  M  N  G  C  F  V  E  F  I  R  R  I  Q  V  D  Q  N  L  *  C  L  V  Y  T  A  V  M  N  T  A  M  V  R  R  L  R  H  H  P  N  S  M  I  C  S  N  H  Y  Q  K  W  T  I  D  S  P  I  Y  R  G  *  T  L  S  R  P  R  N  S  T  S  I  V  W  I  Q  P  I  S  I  G  Q  F  S  L  G  S  N  Q  C  R  N  W  A  Q  Q  I  K  L  Q  A  F  R  V  R  L  R  G  M  S  I  T  T  F  T  A  T  T  T  I  *  I  F  S  T  M  F  T  P  I  L  Q  I  S  E  A  T  Q  R  L  K  V  L  I  *  T  K  K  L  K  A  G  K  E  I  N  G  L  T  N  R  V  T  S  N  R  V  S  M  D  F  P  K  R  I  Q  T  M  W  I  N  S  G  S  N  V  R  I  R  R  *  I  S  G  S  S  S  R  G  Y  W  K  V  R  K  V  V  A  R  N  L  N  A  S  I  L  C  I  Y  T  E  G  L  D  L  D  F  L  G  P  T  D  S  K  K  E  Q  V  Q  Y  H  A  K  E  I  K  S  F  E  G  T  S  G  Q  T  S  W  T  L  F  A  S  S  C  N  C  V  *  S  H  *  A  E  W  H  F  L  F  A  S  C  V  *  S  H  *  A  E  G  T  S  A  W  T  I  K  *  C  T  Q  T  G  D  I  C  R  G  V  Y  I  L  L  G  N  W  A  F  S  L  F  Y  F  M  I  H  F  Q  I  W  M  Y  F  V  I  F  T  F  L  C  S  K  L  E  D  I  *  K  D  T  F  K  I  L  F  I  I  C  H  F  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76375" stop="76606"/>
                    <exon start="77403" stop="77674"/>
                    <exon start="78456" stop="79052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFFYEKKRSFLLIKKKIMGVQEKDPLLQLSLPPGFRFYPTDEELLVQYLCKKVAGHDFPLQIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITSQGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRLFESSRKNNGSSKLDEWVLCRIYKKNSSGPKPLMSGLHSSNEYSHGSSTSSSSQFDDMLESLPEMDDRFSNLPRLNSLKAEKFNLDRLDSANFDWAILAGLKPMPELGPANQAPGVQGQAQGHVNNHIHSDNNNMNFLNDVYAHPPNFRGNTKVESINLDEEVESGKRNQRIDQSSYFQQSLNGFSQAYTNNVDQFGIQCPNQTLNLGFKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79033" stop="79263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGSSSRGYWKVRKVVARNLNASILCIYTEGLDLDFLGPTDSKKEQVQYHAKEIKSFEGTSGQTSWTLFASSCNCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="83585" PGL_stop="84233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83585" e_stop="84233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="83585" e_stop="84233" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83585" stop="84233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACGAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  R  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  E  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83586" stop="84233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSRVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="84244" PGL_stop="85051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84244" e_stop="85051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="84244" e_stop="85051" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84244" stop="85051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGACAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGACATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGTCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTTCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  D  S  G  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  T  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  F  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  T  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  *  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  V  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  S  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  D  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  S  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84246" stop="85049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFDMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRSDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="88714" PGL_stop="87861"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88714" e_stop="87861"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="88714" e_stop="87861" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88714" stop="87861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACAAAAAAAATAAAAATGACAGATTTCAACTTCGACAGTACTTGTACTTCTCCATATATAAGTGCACCTTCAAGTCCTCAACATTTTGGTACAACATTCTTTTTTAGTGCTCCTACTAGCCCTACTCGTATCTCCGCTCTTCACAGCGAATCTAACGTTGCTGATCATGATCATGATAACGATAATGATGATTTTGCTTTTGAATTTAGCGGATATGAAATAATGGAGAAAAGTACAATAGCAGCTGACGAGTTATTTGATGGCGGGAAAATCAAATTAAAGCAAGTAATGGTACCTATTGATTCGCCGAAAATGAAAAAAAACGACAAAGATAGTGTAAATTCTGAACCAAATTCTTCTATGAGAGTATCGGGTGTTTTGTTAATCAATGAAAATGCGGAGAAAACAGAGTCCTCTGTTTCGTCGTTATGGAAAAGAAGATGGAAATTGAAAGATTTATTGTTGTTTAGAAGTGCTTCTGAGAGTCGAGCTAGTAGTAATACGATAGAGATGAGTAAGTATGCGTTGGTGAAGAAAGTTCGTGAAGAGGAGGGGTCGAGCTCGAGCTTGAGGATAAGGAAGATGGAATCGAATTCGGCTCATGAATTGCATTATAAGATGAAGAAGGAGGTGTTGAAAGATATGAAGAAGAAAACATTTTTACCATATAAGCAAAGTGTTCTTAGTTGGCATGGTTGTTATGGTCTTGATGATACAATTACAATGTATATTTCTCCTCGTTCGTAGTTTATTGTATGATTATTATCATGTTTGATTGTATATTTATTTGATATTATACATTTCGCTTCCGTGCAGGATTTGAACTTGATGAGTTTAATTTCTGAATTTAA</gDNA_template>
            <first_frame> T  T  K  K  I  K  M  T  D  F  N  F  D  S  T  C  T  S  P  Y  I  S  A  P  S  S  P  Q  H  F  G  T  T  F  F  F  S  A  P  T  S  P  T  R  I  S  A  L  H  S  E  S  N  V  A  D  H  D  H  D  N  D  N  D  D  F  A  F  E  F  S  G  Y  E  I  M  E  K  S  T  I  A  A  D  E  L  F  D  G  G  K  I  K  L  K  Q  V  M  V  P  I  D  S  P  K  M  K  K  N  D  K  D  S  V  N  S  E  P  N  S  S  M  R  V  S  G  V  L  L  I  N  E  N  A  E  K  T  E  S  S  V  S  S  L  W  K  R  R  W  K  L  K  D  L  L  L  F  R  S  A  S  E  S  R  A  S  S  N  T  I  E  M  S  K  Y  A  L  V  K  K  V  R  E  E  E  G  S  S  S  S  L  R  I  R  K  M  E  S  N  S  A  H  E  L  H  Y  K  M  K  K  E  V  L  K  D  M  K  K  K  T  F  L  P  Y  K  Q  S  V  L  S  W  H  G  C  Y  G  L  D  D  T  I  T  M  Y  I  S  P  R  S  *  F  I  V  *  L  L  S  C  L  I  V  Y  L  F  D  I  I  H  F  A  S  V  Q  D  L  N  L  M  S  L  I  S  E  F   </first_frame>
            <second_frame>  L  Q  K  K  *  K  *  Q  I  S  T  S  T  V  L  V  L  L  H  I  *  V  H  L  Q  V  L  N  I  L  V  Q  H  S  F  L  V  L  L  L  A  L  L  V  S  P  L  F  T  A  N  L  T  L  L  I  M  I  M  I  T  I  M  M  I  L  L  L  N  L  A  D  M  K  *  W  R  K  V  Q  *  Q  L  T  S  Y  L  M  A  G  K  S  N  *  S  K  *  W  Y  L  L  I  R  R  K  *  K  K  T  T  K  I  V  *  I  L  N  Q  I  L  L  *  E  Y  R  V  F  C  *  S  M  K  M  R  R  K  Q  S  P  L  F  R  R  Y  G  K  E  D  G  N  *  K  I  Y  C  C  L  E  V  L  L  R  V  E  L  V  V  I  R  *  R  *  V  S  M  R  W  *  R  K  F  V  K  R  R  G  R  A  R  A  *  G  *  G  R  W  N  R  I  R  L  M  N  C  I  I  R  *  R  R  R  C  *  K  I  *  R  R  K  H  F  Y  H  I  S  K  V  F  L  V  G  M  V  V  M  V  L  M  I  Q  L  Q  C  I  F  L  L  V  R  S  L  L  Y  D  Y  Y  H  V  *  L  Y  I  Y  L  I  L  Y  I  S  L  P  C  R  I  *  T  *  *  V  *  F  L  N  L  </second_frame>
            <third_frame>   Y  K  K  N  K  N  D  R  F  Q  L  R  Q  Y  L  Y  F  S  I  Y  K  C  T  F  K  S  S  T  F  W  Y  N  I  L  F  *  C  S  Y  *  P  Y  S  Y  L  R  S  S  Q  R  I  *  R  C  *  S  *  S  *  *  R  *  *  *  F  C  F  *  I  *  R  I  *  N  N  G  E  K  Y  N  S  S  *  R  V  I  *  W  R  E  N  Q  I  K  A  S  N  G  T  Y  *  F  A  E  N  E  K  K  R  Q  R  *  C  K  F  *  T  K  F  F  Y  E  S  I  G  C  F  V  N  Q  *  K  C  G  E  N  R  V  L  C  F  V  V  M  E  K  K  M  E  I  E  R  F  I  V  V  *  K  C  F  *  E  S  S  *  *  *  Y  D  R  D  E  *  V  C  V  G  E  E  S  S  *  R  G  G  V  E  L  E  L  E  D  K  E  D  G  I  E  F  G  S  *  I  A  L  *  D  E  E  G  G  V  E  R  Y  E  E  E  N  I  F  T  I  *  A  K  C  S  *  L  A  W  L  L  W  S  *  *  Y  N  Y  N  V  Y  F  S  S  F  V  V  Y  C  M  I  I  I  M  F  D  C  I  F  I  *  Y  Y  T  F  R  F  R  A  G  F  E  L  D  E  F  N  F  *  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88714" stop="87965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKKIKMTDFNFDSTCTSPYISAPSSPQHFGTTFFFSAPTSPTRISALHSESNVADHDHDNDNDDFAFEFSGYEIMEKSTIAADELFDGGKIKLKQVMVPIDSPKMKKNDKDSVNSEPNSSMRVSGVLLINENAEKTESSVSSLWKRRWKLKDLLLFRSASESRASSNTIEMSKYALVKKVREEEGSSSSLRIRKMESNSAHELHYKMKKEVLKDMKKKTFLPYKQSVLSWHGCYGLDDTITMYISPRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="135205" PGL_stop="132380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135205" e_stop="134832"/>
            <exon e_start="134534" e_stop="134485"/>
            <exon e_start="134131" e_stop="134029"/>
            <exon e_start="133408" e_stop="133355"/>
            <exon e_start="132648" e_stop="132490"/>
            <exon e_start="132396" e_stop="132380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.981"/>
          <exon-intron don_prob="0.969" acc_prob="0.951" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135205" e_stop="134832" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.994">
            <gDNA_intron_boundary i_start="134831" i_stop="134535" i_length="297"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134534" e_stop="134485" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.966">
            <gDNA_intron_boundary i_start="134484" i_stop="134132" i_length="353"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134131" e_stop="134029" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="134028" i_stop="133409" i_length="620"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="133408" e_stop="133355" e_length="54"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="133354" i_stop="132649" i_length="706"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="132648" e_stop="132490" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.951">
            <gDNA_intron_boundary i_start="132489" i_stop="132397" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="132396" e_stop="132380" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135205" stop="134832"/>
              <exon start="134534" stop="134485"/>
              <exon start="134131" stop="134029"/>
              <exon start="133408" stop="133355"/>
              <exon start="132648" stop="132490"/>
              <exon start="132396" stop="132380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTACTTTACAATATTGTTTTGCTGCAGAATTTGTGAAATCTTATGCACTTGTGATAGTAACATTGCCGGTTTGCATGATCGTATTCCAGTAATACTCTTTATCATGCTTGAATGTCTGATATGGTGTCAACGAAACCAGTGAGGATCTCAAGGATTGATGTTTTCACAGACTTCTTAAATTTCTTAAGCAATCATCTGAACAGATGATATCTTTAAACACAAACCTTACTGCAATCAAGATGAATTTCTTTTTATCTTGTCAGGGTGGATTACAGAAACTTCTACAGTACATAAAGGATAAAGATCCAGATAAAGTATCCGTTTGTCTTGCATCTACATTGGATACTATTGCACAGATGGAGTTGTTACAG : GCCCCAGGCTTATCATTTTTGTTGCCTCAGCAGTACGTGAAATACCCAAG : GCTCACAGGGAGAGGAATAGTTGAATTTACAGTTGAGAAAGTAGATGGTTCAGCATTTTCTCCTGAATCTGCAGGTGAAGCCAAAAGCACTGCAAAAATTCAG : GTTGTTATAGATGGGTTTTCAGCACCACTGACTGCAGGAAACTTCGCAAAACTG : GTGGTAGATGGGGCATATGATGGGATGAAGCTGACTTGTGCAAACCAAGCAATTCTTTCGGACAGCGAGGTGGGAAAGACCACAGGATACAGTGTTCCATTGGAAATCAAGCCAGCCGGACAATTTGAGCCTCTTTACAGAACAACATTAAGCATTCAG : GATGGGGAGCTGCCTGT</gDNA_template>
            <first_frame> L  L  L  Y  N  I  V  L  L  Q  N  L  *  N  L  M  H  L  *  *  *  H  C  R  F  A  *  S  Y  S  S  N  T  L  Y  H  A  *  M  S  D  M  V  S  T  K  P  V  R  I  S  R  I  D  V  F  T  D  F  L  N  F  L  S  N  H  L  N  R  *  Y  L  *  T  Q  T  L  L  Q  S  R  *  I  S  F  Y  L  V  R  V  D  Y  R  N  F  Y  S  T  *  R  I  K  I  Q  I  K  Y  P  F  V  L  H  L  H  W  I  L  L  H  R  W  S  C  Y  R :   P  Q  A  Y  H  F  C  C  L  S  S  T  *  N  T  Q   : G  S  Q  G  E  E  *  L  N  L  Q  L  R  K  *  M  V  Q  H  F  L  L  N  L  Q  V  K  P  K  A  L  Q  K  F  R :   L  L  *  M  G  F  Q  H  H  *  L  Q  E  T  S  Q  N  W :   W  *  M  G  H  M  M  G  *  S  *  L  V  Q  T  K  Q  F  F  R  T  A  R  W  E  R  P  Q  D  T  V  F  H  W  K  S  S  Q  P  D  N  L  S  L  F  T  E  Q  H  *  A  F  R :   M  G  S  C  L  </first_frame>
            <second_frame>  C  Y  F  T  I  L  F  C  C  R  I  C  E  I  L  C  T  C  D  S  N  I  A  G  L  H  D  R  I  P  V  I  L  F  I  M  L  E  C  L  I  W  C  Q  R  N  Q  *  G  S  Q  G  L  M  F  S  Q  T  S  *  I  S  *  A  I  I  *  T  D  D  I  F  K  H  K  P  Y  C  N  Q  D  E  F  L  F  I  L  S  G  W  I  T  E  T  S  T  V  H  K  G  *  R  S  R  *  S  I  R  L  S  C  I  Y  I  G  Y  Y  C  T  D  G  V  V  T   : G  P  R  L  I  I  F  V  A  S  A  V  R  E  I  P  K  :  A  H  R  E  R  N  S  *  I  Y  S  *  E  S  R  W  F  S  I  F  S  *  I  C  R  *  S  Q  K  H  C  K  N  S   : G  C  Y  R  W  V  F  S  T  T  D  C  R  K  L  R  K  T   : G  G  R  W  G  I  *  W  D  E  A  D  L  C  K  P  S  N  S  F  G  Q  R  G  G  K  D  H  R  I  Q  C  S  I  G  N  Q  A  S  R  T  I  *  A  S  L  Q  N  N  I  K  H  S   : G  W  G  A  A  C </second_frame>
            <third_frame>   V  T  L  Q  Y  C  F  A  A  E  F  V  K  S  Y  A  L  V  I  V  T  L  P  V  C  M  I  V  F  Q  *  Y  S  L  S  C  L  N  V  *  Y  G  V  N  E  T  S  E  D  L  K  D  *  C  F  H  R  L  L  K  F  L  K  Q  S  S  E  Q  M  I  S  L  N  T  N  L  T  A  I  K  M  N  F  F  L  S  C  Q  G  G  L  Q  K  L  L  Q  Y  I  K  D  K  D  P  D  K  V  S  V  C  L  A  S  T  L  D  T  I  A  Q  M  E  L  L  Q  :  A  P  G  L  S  F  L  L  P  Q  Q  Y  V  K  Y  P  R :   L  T  G  R  G  I  V  E  F  T  V  E  K  V  D  G  S  A  F  S  P  E  S  A  G  E  A  K  S  T  A  K  I  Q  :  V  V  I  D  G  F  S  A  P  L  T  A  G  N  F  A  K  L  :  V  V  D  G  A  Y  D  G  M  K  L  T  C  A  N  Q  A  I  L  S  D  S  E  V  G  K  T  T  G  Y  S  V  P  L  E  I  K  P  A  G  Q  F  E  P  L  Y  R  T  T  L  S  I  Q  :  D  G  E  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135044" stop="134832"/>
                    <exon start="134534" stop="134485"/>
                    <exon start="134131" stop="134029"/>
                    <exon start="133408" stop="133355"/>
                    <exon start="132648" stop="132490"/>
                    <exon start="132396" stop="132382"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFHRLLKFLKQSSEQMISLNTNLTAIKMNFFLSCQGGLQKLLQYIKDKDPDKVSVCLASTLDTIAQMELLQAPGLSFLLPQQYVKYPRLTGRGIVEFTVEKVDGSAFSPESAGEAKSTAKIQVVIDGFSAPLTAGNFAKLVVDGAYDGMKLTCANQAILSDSEVGKTTGYSVPLEIKPAGQFEPLYRTTLSIQDGELP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="145856" PGL_stop="145417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="145856" e_stop="145417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="145856" e_stop="145417" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145856" stop="145417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTATAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAAAGTAGTTTAAATTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAAAAGAATCATATATACCCCTAAATAATTTTAAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAATTTTCGTTAAATGAAGAGTATATGTGAGCCATTTTGTAACGGCAAGGGTATATGTGAGCCGTTTGTATAACGGTAAAGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATAAGACCCTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  K  *  F  K  F  F  S  L  N  *  G  M  K  E  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  K  E  S  Y  I  P  L  N  N  F  K  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  I  F  V  K  *  R  V  Y  V  S  H  F  V  T  A  R  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  V  P  L  L  *  R  G  V  Y  Q  L  *  M  T  K  L  R  G  I  *  D  P  F   </first_frame>
            <second_frame>  Y  Y  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  S  S  L  N  F  F  L  *  T  K  E  *  K  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  I  L  K  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  F  S  L  N  E  E  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  K  A  Y  M  C  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  K  T  L  F  </second_frame>
            <third_frame>   I  I  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  K  V  V  *  I  F  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  K  R  I  I  Y  T  P  K  *  F  *  K  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  S  I  C  E  P  F  C  N  G  K  G  I  C  E  P  F  V  *  R  *  R  H  I  C  A  T  F  I  T  R  G  I  S  A  L  N  D  K  V  E  G  Y  I  R  P  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0161H10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="157856" PGL_stop="159536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157856" e_stop="158066"/>
            <exon e_start="159303" e_stop="159536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.914" e_score="0.891"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="157856" e_stop="158066" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.914">
            <gDNA_intron_boundary i_start="158067" i_stop="159302" i_length="1236"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="159303" e_stop="159536" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157856" stop="158066"/>
              <exon start="159303" stop="159536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAGATAGGCTAGAAAGATAAAAAGAGGATAGAGATAGAACCTTACAACTCTGTTTCAATGGCTTCCCCTTTATCCTCTTCCATTTTCTCTCCAAATTTCACTCATTTGTACCAAAATAAAGCTTTCTTCCATAGCCATCTTCCACTTCGTTCCCCAATTTATGCTACACTCAATCGCATTGCCTTGAAGAAGAATGCTTCCATG : GAATTGACAAAGAGGCTGACTGCTCCTTCCATTTTGTCAACATATTTGGAGAGTACAGTCAAGCAATTTCAGAGTTTAATGGCGGTGATCATTATATTTACTGAAATTGCATCTCCAATACCTTTGTATGGTTTGCAAGATTTGTCCATTTCTCCTGCCGAGGCAGTGCTTTATTCCCCTGAAACAAAAACTCTCCCTAGAACAGGAGAATTAGCTCTTAGAAGAGCTATCCCA</gDNA_template>
            <first_frame> R  E  R  D  R  L  E  R  *  K  E  D  R  D  R  T  L  Q  L  C  F  N  G  F  P  F  I  L  F  H  F  L  S  K  F  H  S  F  V  P  K  *  S  F  L  P  *  P  S  S  T  S  F  P  N  L  C  Y  T  Q  S  H  C  L  E  E  E  C  F  H   : G  I  D  K  E  A  D  C  S  F  H  F  V  N  I  F  G  E  Y  S  Q  A  I  S  E  F  N  G  G  D  H  Y  I  Y  *  N  C  I  S  N  T  F  V  W  F  A  R  F  V  H  F  S  C  R  G  S  A  L  F  P  *  N  K  N  S  P  *  N  R  R  I  S  S  *  K  S  Y  P  </first_frame>
            <second_frame>  E  R  E  I  G  *  K  D  K  K  R  I  E  I  E  P  Y  N  S  V  S  M  A  S  P  L  S  S  S  I  F  S  P  N  F  T  H  L  Y  Q  N  K  A  F  F  H  S  H  L  P  L  R  S  P  I  Y  A  T  L  N  R  I  A  L  K  K  N  A  S  M  :  E  L  T  K  R  L  T  A  P  S  I  L  S  T  Y  L  E  S  T  V  K  Q  F  Q  S  L  M  A  V  I  I  I  F  T  E  I  A  S  P  I  P  L  Y  G  L  Q  D  L  S  I  S  P  A  E  A  V  L  Y  S  P  E  T  K  T  L  P  R  T  G  E  L  A  L  R  R  A  I  P </second_frame>
            <third_frame>   R  E  R  *  A  R  K  I  K  R  G  *  R  *  N  L  T  T  L  F  Q  W  L  P  L  Y  P  L  P  F  S  L  Q  I  S  L  I  C  T  K  I  K  L  S  S  I  A  I  F  H  F  V  P  Q  F  M  L  H  S  I  A  L  P  *  R  R  M  L  P  W :   N  *  Q  R  G  *  L  L  L  P  F  C  Q  H  I  W  R  V  Q  S  S  N  F  R  V  *  W  R  *  S  L  Y  L  L  K  L  H  L  Q  Y  L  C  M  V  C  K  I  C  P  F  L  L  P  R  Q  C  F  I  P  L  K  Q  K  L  S  L  E  Q  E  N  *  L  L  E  E  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0161H10.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157875" stop="158066"/>
                    <exon start="159303" stop="159536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDKKRIEIEPYNSVSMASPLSSSIFSPNFTHLYQNKAFFHSHLPLRSPIYATLNRIALKKNASMELTKRLTAPSILSTYLESTVKQFQSLMAVIIIFTEIASPIPLYGLQDLSISPAEAVLYSPETKTLPRTGELALRRAIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 98 chains have been computed
$ 
$ memory statistics:
$ 489352 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 21276 bytes was the average size of a spliced alignment
$ 27920 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1469 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 117 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:46:07
-->
