<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:47:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321786" ref_strand="+" ref_description="SGN-U321786        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L1 family protein | chr2:17789385-17792140 FORWARD | Aliases: F14N22.3(evalue: 8e-09, score=57) genbank/nr: hypothetical(evalue: 5e-07, score=57)">
      <seq>ctcttctctcttccctaaaccctcattacatcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgctgaagaggaaatgatttcgtttccaacattgattaatgtgaagagtgatgaaaagaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6074" stop="7264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6374" g_stop="6964" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U321786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6374" e_stop="6964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322714" ref_strand="+" ref_description="SGN-U322714        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L1 family protein | chr2:17789385-17792140 FORWARD | Aliases: F14N22.3(evalue: 2e-61, score=233) genbank/nr: gi|30689119|ref|NP_850375.1| ribosomal protein L1p family [Arabidopsis thaliana] gi|20268740|gb|AAM14073.1| unknown protein [Arabidopsis thaliana] gi|21280899|gb|AAM45043.1| unknown protein [Arabidopsis thaliana] gi|26451659|dbj|BAC42926.1| unknown protein [Arabidopsis thaliana](evalue: 1e-59, score=233)">
      <seq>aaaaaagctgtttatgatcttaaagaggccattcggcttgtaaaggctaatgccaagaagaaatttgatgaaactctggaagctcatgttgttttgactcctgatatgcgtcgaagtgatctgaaacttgaaggtacagtggctgttcctcatgggtttggaaaggtatatcggattgctgtttttgctgaaggagctgctgctgatgaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagagaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6660" stop="16812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6960" g_stop="7004" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7005" i_stop="9110" i_length="2106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9111" g_stop="9188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9189" i_stop="9865" i_length="677">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9866" g_stop="9907" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="165" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9908" i_stop="9993" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9994" g_stop="10099" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="375" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="480" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="568" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="615" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16180" g_stop="16512" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="948" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="962"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U322714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6960" e_stop="7004"/>
          <exon e_start="9111" e_stop="9188"/>
          <exon e_start="9866" e_stop="9907"/>
          <exon e_start="9994" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
          <exon e_start="16180" e_stop="16512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAGGTCAGATTTTTTTGTTTCAATCAACTGTGTATTGTTTTGTTGGAGTTTCTGTTCTGTTATTAGCTGCTGCTTTTTGTACTTCTGGTAATTATATCGCTAGACTGCTTTGGACTGTTTTTCTTGAGCTGAGTGTCTGTATGAAACAACCTCTCTGAGGTAAGAGTTACTTATGTGAGGTAGGAGTAGTAAGGTTATATGAATTCTTTTTAGCATTTGTTGTTTCTTATACAAAATTTTGACTCCTTGTAAAGTTAAAAGGCAGTAGTAATTGGATAATATATTGAAAAAAAGAAGAAAAAAACAATAACAGGATGCCTATTATTAGTTTAAATGAAAAAGAAGAGGAGAAAACAATTAAAGGATTCCCATTAAAGGGGCCATTTGGCTTGTAAAGGTTACATTTTTTGTTTCAATCAACTGTGTGTAGAGATCCCAAATTAGTTGAGGTTGTTTATATGAATTCTTTTTTAGCATTTGCTGTTTCTTGTACGAAATTTTGACTCGTTATAAAGTTGTAAATAATAGTAATAATATAAGAAAACAATCACAGGATGTGTTTCTGCTGGATTTCTAAATGTAGTAAAGAATATCTGGAATATTATTATTTCATCGTCATACTTGCATGTCTGATAATTTTGTTTCAAGTGGACAGTGAAATTTCAAGGTAGCCCTAAAATAGGGAGTTGAGGAAAGAATAAAAGTAAGAACTGAAGAAAAACACTTCTAGCAGTTTACTTAGGTTTCATATGGATAACCTTCTCGTAAGTTACATTGTATCCTTCAAGGTCAAAAAAAGATCATACTTGAATAACCTTGTTGTGATACTCACTATTTGCTTACATTACTAATTTGGAGTCGATATGGTATCCTAGTGAACATCGATGATTGGGTGCCCGCCATAGTTTATCATGTTTTGATGTAAAAATCTGTCTTTTGGTCTAGAGTCTGTAAATGTGGTTTTCTTCAGCATATTGATGAAAAATTAACTTCATAGAATGCATTATTGCATTGTTAATTATTTGGAGCACCTTGTTGGTATGTCCTACATCCTCAATTGGATATCAATGATTTACTATAGGAATGGTCCAATATATTCTCTAGGTTGAAGACTATTTTTTAATAATGAGAATACTTGTATAACCTCCTTCCATAAGGAGCTGCTGTCACATGCTAAAGTAAAGTGCATCTAAGGATATTTTGGATAGCTTCCATATATCTCTAGATAAGTTAATGGTCAAGGTATTTCTAGACACTCTTTTTTGATAATAATGATGGCGGAGCCTGTTTGCCTGCGCCTCAACTGTTCCACCATGTAGCTGCATCCTTTCACTAATACAAGTACCATATAACTCCATTATTCATTAAGGTATTTCATCAACATTTCAGCAGATAGAAAGGAATCATCTTGTTTTTTGACAATGCTACATTCAGACAGTTGTCTTCCATTAATTACTAGGCCACCCTCTAGCGTCGTATTTCTAGATAATTTTTTGTTTTTTTTTGGCTTTGCTTTCTTTAGGATAGTTATGGTGTCAGAACCTGCTAATCCGTCGTTACCTATTACTTTTCATTAGTATTGGGTAACTCTATCCACCAACACTTAGGCTAGTGTAAAAATCCACGTGATGTTGTCTCTTGGTTCCCAAGGTTGTCACTTCATCTCTTCAACTGTTAGGCTTTTTCCTTGAGAAGTCGCAAGTGTTTATAGATAATATCATAGTGAAAGAGACAAGTTCAACTTTTCCATCAATTAGGGGTAGTCATATGCATGGCTCAAAAATTCAACTCTTATTTTTCCTCAGAATCTCATTATATTTTTTTATTCATCTATTCAAGTTGAAAATAGTGATTATGGATCAAAGTCCATATTATGTAATCTGAGTGACGCTTAAGCATAGCTTGCCTGAGATAGTTTGCTTGTCTGCTTTTTGCATGGTGCTTTGTCATTCTATCTATAGTATATAATTAAGTGACTCTTAGCTGTAGCTCGCCATTAATTGGTTTTCTTGTGTGCTTCTCATGGGGCTTTGTCTTTCTTTCTACTCGTGTTTTCTTCAGAGGTTACAGACTGAGCCATGATTCATTGTATTTTTAGTGATTATGCAGGCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTGGTGCGTGCTTTCGTCCTCTTTCTGGCCCACATTAAGTTTACTATCTGAGCTTGTCGTCACTCGTCACGTGATACTTGAACAGAAAGACTTCTTGTTACCACTTCTGTTGTTATTGGTTTATATGTCTAAGTTTATTCATCAGATGGTGAATGGATATCAAATAATTGTGCTTAGAAATAGCTCATAAATCACGAGAGCATCGAGGGGCTTAAACCTTTCAAACCTAAATCTCAATTCTTGAACATTTGGAAGCACTCAGAATTTGCTCTGCATGTAGTCTTGTAGATTTTGCAATTGACAGAAAATTCATTTATATTTAAAACAAATCTCCAACATTCTAGATATACTTATCATGGTTTGGTTAGGGGTTTGCTGATTCCACATCCTTTTGTTGTTCGTGAGTGTATGGAGCAGATTTTATGGTAGAATCATGCTCCTAATGCCACCTAATTAAGAGTGAATTTTCCTTTCCTTTGCTGGAATATTGTTCGTGCAAGCCTCTAGAAATATAAATTCTCTTGTACAGGTGGTATAAGCAGAGTGAGATTACAAACATGTTTCATTACCAATTCTTCCGTTTTGATTGACCTCTTCTAGTGTAGCTAATTTGACCCTAGTATAAAGCAATCTCATTCGTTTGCTAGTGCTAGCTCATAGTTCTTTCTTTTGTACTGCAGAAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAGGTATTAGTGCATTCTTCATAAAGTTTAAGGTTAGATAATCATATGCTGTTGTAGATATACTGTTTGACTAAATATTTTCCTTTCAGGTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</genome_strand>
        <mrna_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG......................................................................................GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329870" ref_strand="+" ref_description="SGN-U329870        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaatattggctgggaaaggattanaaaagaaagggattggagggttgaattagttaagcattgtaaccagtgggctattgaagtcctttaatttcattttaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13062" stop="14439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13362" g_stop="14139" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U329870" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13362" e_stop="14139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGA-TGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAATATTGGCTGGGAAAGGATTANAAAAGAAAGGGATTGGAGGGTTGAATTAGTTAAGCATTGTAACCAGTGGGCTATTGAAGTCCTTTAATTTC-ATTTTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327648" ref_strand="+" ref_description="SGN-U327648        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="22760" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23060" g_stop="23481" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23615" g_stop="23621" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U327648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23060" e_stop="23481"/>
          <exon e_start="23615" e_stop="23621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTTTTTTGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTGAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317922" ref_strand="+" ref_description="SGN-U317922        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: AT3G21750.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr3:7664352-7666202 FORWARD | Aliases: MSD21.8 (evalue: 1e-64, score=243) genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 2e-131, score=471)">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25143" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25443" g_stop="25861" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="27075" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="975" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U317922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25443" e_stop="25861"/>
          <exon e_start="26520" e_stop="27075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336332" ref_strand="+" ref_description="SGN-U336332        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 1e-07, score=60.5)">
      <seq>tgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatgtatttcaaattaactttatgtgtccaaggctttgatacagtaacaaggtatgttgcttggactctttaaaaatgttgatggatatgtgtgtcggatactgcaaaagtagtgtacataattttggagagattgaacatacaacttgtgatttatagattagatgcatgtcatcattgtcatgaatttggctgctactacaaaaacaaaaagattggtacttccttccctcccaactttatgatacttttaagcatttcgagagacaaatagtttttctcaaagcatgatatgccttttcaagtattaaaaattattaattattgtgacttatagtatgtttcaaatataaattttatttacaaaagcttaaagattatatgcccgaattcatggtcaaaatttaaaagtttggctctcgaaatccaaatgatgtcgcatgaccgggggagtattttaagttgaaaggggtgttgcactactacaccaaccttctcaatttaacgcgactagaaaatgtatttcaatgactttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25446" stop="26702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25746" g_stop="26402" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U336332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25746" e_stop="26402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</genome_strand>
        <mrna_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328502" ref_strand="+" ref_description="SGN-U328502        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G07260.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr1:2227593-2229318 REVERSE | Aliases: F10K1.3, F10K1_3 (evalue: 1e-22, score=102) genbank/nr: gi|20146091|dbj|BAB88934.1| glucosyltransferase NTGT3 [Nicotiana tabacum](evalue: 2e-39, score=164)">
      <seq>tattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaggatttggaaatggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggccaaaaagttatagtgaaagcagaggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttctaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27500" stop="28683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27800" g_stop="28382" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U328502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27800" e_stop="28382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324085" ref_strand="+" ref_description="SGN-U324085        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25510090-25510509 REVERSE | Aliases: MBK5.17, MBK5_17(evalue: 9e-44, score=173) genbank/nr: gi|15242865|ref|NP_201174.1| hypothetical protein [Arabidopsis thaliana] gi|10177050|dbj|BAB10462.1| gene_id:MBK5.17~unknown protein [Arabidopsis thaliana](evalue: 6e-42, score=173)">
      <seq>gtactttaattgttggctgacaattattttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatgtactacgggcaggtaagcgaggcaaggcagaaaaagtgggagagtttaccatggcctatgtggagaaaccaaacatgagtgagatacattgggtccctgatccgaagaatcctaagatatatttgccagtggattttacttcttacatttcatcaacacattgagtattgggcaaacttatatctgactggtactttcctttaaactctcttccatgatggttgcttgaatatgactcgatcgagtttatgttaatctattcagttcagattctttgaagggtcttatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32957" stop="30365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32657" g_stop="32463" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30665" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="758" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U324085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32657" e_stop="32463"/>
          <exon e_start="31227" e_stop="30665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</genome_strand>
        <mrna_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326806" ref_strand="+" ref_description="SGN-U326806        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:5081961-5084057 FORWARD | Aliases: K15M2.25(evalue: 5e-37, score=132) genbank/nr: gi|15229495|ref|NP_188128.1| hypothetical protein [Arabidopsis thaliana] gi|24030371|gb|AAN41348.1| unknown protein [Arabidopsis thaliana](evalue: 4e-35, score=132)">
      <seq>agagaaaatgcaaagtagtatgagaagctcaagaaggcatgtgttgaaggtattgagttcaaggatcatgacgatgagagtgttgaaatgaaggaagagaaaggtagagttagcatttgcattccacctaaaaatgctttgcttcttatgagatgtcgatctgatcctatgaaaatggcggatattgctaatcgattctgggaatcacctgctcgggaagaaactaatgagaaagaaatcggagaaaatgcggaggtgaaagaagtagaagatacagaaaacactgaatgcaatgtactacaggaaactagtgtttctgtagatctggtagaaaatgaagaagcagtagaagtcccagatagtagtaaggatgaagaaaagctcaaatgcgatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagaaaaaaaagaagaagaagaagacagcagcattcagaggttttcatctttctcagaaaacgaagaagatgaaacattggaagaagaagagaggttcaaatcaattattaagaaggtgatcgaagaaacactcttgttagaacacattgatagagaagatgcaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggggacggctaagcttgtaccggagacttgtttctggaagaatatgaagattgagccacatcgacgagctacatttggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36272" stop="34464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="34764" g_length="1209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1209" r_length="1209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U326806" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1209</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="34764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGC-GGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</genome_strand>
        <mrna_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTG-TTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCCCAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAAAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGGTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345485" ref_strand="+" ref_description="SGN-U345485        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:5081961-5084057 FORWARD | Aliases: K15M2.25(evalue: 4e-28, score=122) genbank/nr: gi|15229495|ref|NP_188128.1| hypothetical protein [Arabidopsis thaliana] gi|24030371|gb|AAN41348.1| unknown protein [Arabidopsis thaliana](evalue: 3e-26, score=122)">
      <seq>aaaaaaacacagcttctctacacttacagacccccaaatccatggctacctacaacagcaataccaagaaaccattatcacattactgaaaactccttcatctcttcttttttgtatactttcttcttcaaatgaaactcaccaaatccatccttagtcctagccatgctcggcatgacccacctcttactcttcccacttctctcagtcggaagcttaaagctaatggcagtattaaaggcggacaatccccagctacgttttctactaccaccggaaagaaacgagggtcgagttttgataacccggaaccttcgtctccgaaggtgacttgtattggtcaggtgaaaatgaagacgaagaagaaagttaggcaaacacggaatttgtctaatagaaggagtgatataagtttcaggaagttggaagaagaaaaaaggggagttttgattcagaatcagaggagttctagtgtgcatttgcaggcgcaagatcaatgtgcggtggcgcatagaaatcagagatgggtacatttgccagtaacgatatatgaagctttgagagagtttagctgtttgtttccatgtcggtcttcgtgtttttcgaatgagaaaggaaaacaacaagataaagttaatggatctagagatgttgataataataatgggcagaggagatgtgaggatgttgttgctagatggctagttgcattacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37068" stop="35752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36768" g_stop="36052" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U345485" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36768" e_stop="36052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</genome_strand>
        <mrna_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTTCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320664" ref_strand="+" ref_description="SGN-U320664        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT3G15090.1 | Symbol: None | oxidoreductase, zinc-binding dehydrogenase family protein, low similarity to NOGO-interacting mitochondrial protein from Mus musculus (gi:14522884); contains Pfam profile: PF00107 zinc-binding dehydrogenases | chr3:5076756-5079123 FORWARD | Aliases: K15M2.24 (evalue: 6e-148, score=521) genbank/nr: gi|57900324|dbj|BAD87277.1| putative NOGO-interacting mitochondrial protein [Oryza sativa (japonica cultivar-group)] >gi|57899609|dbj|BAD87188.1| putative NOGO-interacting mitochondrial protein [Oryza sativa (japonica cultivar-group)] (evalue: 3e-153, score=545)">
      <seq>acactctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggcattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaatttggttgcaattttcaaatttacttactggtgaattaagggtgattgctaaatatccaagtatgtgtataatttgtctatttctaaaattgattagatctaaatttaacaaaagtaaattatatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47451" stop="39919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47151" g_stop="46838" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43117" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="776" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42969" g_stop="42850" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="896" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42739" g_stop="42631" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="897" r_stop="1005" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40912" g_stop="40222" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1696" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1697" polyA_stop="1712"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U320664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1696</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47151" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43117"/>
          <exon e_start="42969" e_stop="42850"/>
          <exon e_start="42739" e_stop="42631"/>
          <exon e_start="40912" e_stop="40222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</genome_strand>
        <mrna_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323119" ref_strand="+" ref_description="SGN-U323119        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | exonuclease family protein, contains exonuclease domain, Pfam:PF00929 | chr3:5074272-5076528 FORWARD | Aliases: K15M2.23(evalue: 1e-75, score=214) genbank/nr: gi|18400624|ref|NP_566499.1| exonuclease protein family [Arabidopsis thaliana] gi|21593535|gb|AAM65502.1| exonuclease, putative [Arabidopsis thaliana](evalue: 9e-74, score=214)">
      <seq>cgatgaggggcattttaggtccttcaacccttcacatgttgggagcttaaagcggatgttaaagtaattgagccaccacgcggagaggaagacaaaaatggcggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55023" stop="49977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54723" g_stop="54558" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54480" g_stop="54408" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="239" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54338" g_stop="54260" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="318" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="403" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52396" g_stop="52278" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50726" g_stop="50648" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="755" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="50400" g_stop="50274" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="882" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U323119" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54723" e_stop="54558"/>
          <exon e_start="54480" e_stop="54408"/>
          <exon e_start="54338" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52396" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50648"/>
          <exon e_start="50400" e_stop="50274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CGATGAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320805" ref_strand="+" ref_description="SGN-U320805        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT5G60860.1 | Symbol: None | Ras-related GTP-binding protein, putative, similar to GTP-binding protein GI:303742 from (Pisum sativum) | chr5:24501855-24502931 FORWARD | Aliases: MAE1.9, MAE1_9 (evalue: 2e-107, score=385) genbank/nr: gi|3024504|sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B >gi|623578|gb|AAA74113.1| putative (evalue: 1e-115, score=419)">
      <seq>atttgttttccttcttagaactctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcatcttatgagtttaaataaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76764" stop="80387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77064" g_stop="77364" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="80086" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="992" r_length="691" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="993" polyA_stop="1003"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-U320805" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77064" e_stop="77364"/>
          <exon e_start="79396" e_stop="80086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</genome_strand>
        <mrna_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342030" ref_strand="+" ref_description="SGN-U342030        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHG1a GI:3822225 from (Arabidopsis thaliana); contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:19840808-19843895 FORWARD | Aliases: F12M16.10, F12M16_10(evalue: 8e-39, score=157) genbank/nr: gi|56202174|dbj|BAD73652.1| C-terminal zinc-finger-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-38, score=162)">
      <seq>ttgaaagaaatactagacatcagaaccttcctaacatgagagttctgccagaagacggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacagagatatgcgtttagacgtagatcacatgtcctacgaggagcttcttgcactgggggagcagattggcaatgtaacaactggattgtcagatgaaataatcgttaaccgcttgaaaacaagatcattttcgccccccgttattccttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccagactgactacaacaagcaagaaactataggaactcttgattgcgggcacgaatatcatgcagaatgcgtaaagaagtggttggttgtgaagaacacttgccctatctgcaaatccaccggattgtcaatagaaagaaaagatttgtgaaaacagggagttggttggttggtggatgaataattataagagtgggacattttgntctcttgttaaatatttgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83576" stop="80798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83276" g_stop="83221" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83220" i_stop="83092" i_length="129">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83091" g_stop="82993" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82992" i_stop="82816" i_length="177">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82815" g_stop="82648" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="323" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82647" i_stop="81324" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81323" g_stop="81098" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="549" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U342030" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83276" e_stop="83221"/>
          <exon e_start="83091" e_stop="82993"/>
          <exon e_start="82815" e_stop="82648"/>
          <exon e_start="81323" e_stop="81098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</genome_strand>
        <mrna_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGNTCTCTTGTTAAATATTTGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313687" ref_strand="+" ref_description="SGN-U313687        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHG1a GI:3822225 from (Arabidopsis thaliana); contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) | chr1:19840808-19843895 FORWARD | Aliases: F12M16.10, F12M16_10(evalue: 1e-10, score=63.9) genbank/nr: gi|20466834|gb|AAM20734.1| unknown protein [Arabidopsis thaliana](evalue: 3e-09, score=65.1)">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacaagttctcacaacatctttggaatgaatttcagatacggaagggacaatcattatatggacgatgtcagaggctcatataagagaaagatgctgaaggaattnctgcaaatcttcatatcatcatgctttggcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87108" stop="84010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86808" g_stop="86652" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86395" g_stop="86313" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84854" g_stop="84310" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="783" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U313687" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86808" e_stop="86652"/>
          <exon e_start="86395" e_stop="86313"/>
          <exon e_start="84854" e_stop="84310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAA-TTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTTCAGA-TACGGAAGGGACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAG-ATGCTGAAGGAATTNCTGCAAATCTTC-ATATCATCATGCTTTGGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329980" ref_strand="+" ref_description="SGN-U329980        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ggaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttgggtaaggtttgagtactctctacccttcccagtttgtttattatcgttattgttgttctcatgtaatttctgggtagtgttttttcatgagcatcaaacatttgaatgaaagctgtgtaatttgtcttgcctcctctggtaaccaaacatgacataagttaatctcgaagtcttaatgagggttggtgttgtttttaaaaaacacacaactaaaatcaagattttatttggtgtgttcccaacttgaaaatttgcatccggggtttgtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="86514" stop="85151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86214" g_stop="85451" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-U329980" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86214" e_stop="85451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCC-GGGTTTGTCAATCT</genome_strand>
        <mrna_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTTCCCAGTTTGTTTATT-ATCGTTATTGTTGTTCTCATGTAATTTCTGGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAGCTGTGTAATTTGTCTTGCCTCCTCTGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTTAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGGTTTGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6374" PGL_stop="16512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6374" e_stop="7004"/>
            <exon e_start="9111" e_stop="9188"/>
            <exon e_start="9866" e_stop="9907"/>
            <exon e_start="9994" e_stop="10099"/>
            <exon e_start="12707" e_stop="12771"/>
            <exon e_start="14265" e_stop="14303"/>
            <exon e_start="14381" e_stop="14485"/>
            <exon e_start="14590" e_stop="14677"/>
            <exon e_start="14951" e_stop="14997"/>
            <exon e_start="16180" e_stop="16512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6374" e_stop="7004" e_length="631"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="7005" i_stop="9110" i_length="2106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9111" e_stop="9188" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.994">
            <gDNA_intron_boundary i_start="9189" i_stop="9865" i_length="677"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9866" e_stop="9907" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9908" i_stop="9993" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9994" e_stop="10099" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12707" e_stop="12771" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.985">
            <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14265" e_stop="14303" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14381" e_stop="14485" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14590" e_stop="14677" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14951" e_stop="14997" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16180" e_stop="16512" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6374" stop="6964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6960" stop="7004"/>
              <exon start="9111" stop="9188"/>
              <exon start="9866" stop="9907"/>
              <exon start="9994" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
              <exon start="16180" stop="16512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG : GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG : AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG : GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG : GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG : ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG : AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG : GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA : GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG : ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</gDNA_template>
            <first_frame> L  F  S  L  P  *  T  L  I  T  S  C  K  Q  N  Y  Y  Q  S  T  F  H  H  C  K  S  S  N  G  S  L  Q  T  T  L  P  S  S  S  S  L  F  I  Q  K  P  I  S  L  F  S  Y  F  P  F  S  F  A  Q  I  S  L  F  L  I  I  I  R  K  P  E  F  E  *  P  K  F  N  S  T  R  F  L  H  P  *  E  P  A  R  E  *  *  P  T  R  I  K  *  P  R  W  G  *  S  G  W  W  V  V  D  P  G  G  S  A  V  L  E  G  Y  P  E  N  S  S  D  F  L  S  D  K  G  S  A  V  T  G  G  F  A  G  R  G  E  R  E  N  G  R  Y  G  *  *  D  G  E  R  E  E  K  N  R  G  A  K  T  G  G  N  E  E  S  Y  E  C  *  R  G  N  D  F  V  S  N  I  D  *  C  E  E  *  *  K  E  E  K  S  C  L  *  S  *  R  G  H  S  A  C  K   : G  *  C  Q  E  E  I  *  *  N  S  G  S  S  C  C  F  D  S  *  Y  A  S  K  *  S   : E  T  *  R  Y  S  G  C  S  S  W  V  W  K   : G  I  S  D  C  C  F  C  *  R  S  C  C  *  *  S  P  R  S  R  G  *  C  C  W  W  F  G  A  H  R  E  H  Q  E  W :   K  C  E  D  *  F  *  Q  M  F  F  H  S  C  N  D  A  E  L  E  T   : D  C  E  V  L  E  A  V  D  A  R  Y  *   : E  R  Y  C  Y  Q  R  Y  N  K  S  S  E  R  S  *  A  R  C  T  V  Q  K  R  *  N  C  N  C  A  C  R  N  W  E   : G  K  F  S  R  R  G  I  V  *  K  H  W  C  I  C  T  *  T  F  A  S  E  A  C  W  S  K  K  E :   L  K  I  C  W  L  C  E  Y  S  P  S  L  Q  Y   : D  G  S  I  I  S  C  Y  N  T  V  V  I  D  C  S  R  P  P  C  K  E  V  C  S  M  I  V  F  E  *  K  I  Q  F  *  L  D  T  L  S  *  *  I  Q  F  *  L  G  T  M  L  Y  S  F  V  *  I  S  *  F  S  H  I  R  K  K  V  F  P  S  Y  F  C  F  F  P  F  T  V  M  I  Y  A  Q  P  S  A  *  N  P  F  L  T  Q  N  S  L  L  L  L  H  I  F  I  V  L  S  E  K  I  </first_frame>
            <second_frame>  S  S  L  F  P  K  P  S  L  H  L  A  N  R  T  T  I  S  P  P  F  T  I  V  R  A  P  M  A  A  F  K  L  L  Y  Q  A  R  R  H  C  S  Y  R  S  P  S  H  F  S  P  T  F  R  S  H  L  H  R  F  L  S  S  S  S  S  S  E  N  P  N  S  N  N  P  S  S  I  Q  P  V  S  Y  T  P  K  N  P  P  E  S  S  S  R  P  E  S  N  N  P  D  G  V  K  A  D  G  G  L  W  T  R  E  D  L  R  Y  L  K  D  T  P  K  I  A  P  I  S  Y  P  T  R  V  A  P  L  P  E  D  L  P  E  E  E  K  G  K  M  E  G  M  G  D  E  M  E  R  E  R  R  R  I  E  A  Q  K  R  A  A  M  R  R  V  M  N  A  E  E  E  M  I  S  F  P  T  L  I  N  V  K  S  D  E  K  K  K  K  A  V  Y  D  L  K  E  A  I  R  L  V  K  :  A  N  A  K  K  K  F  D  E  T  L  E  A  H  V  V  L  T  P  D  M  R  R  S  D  L  :  K  L  E  G  T  V  A  V  P  H  G  F  G  K  :  V  Y  R  I  A  V  F  A  E  G  A  A  A  D  E  A  R  E  A  G  A  D  V  V  G  G  L  E  L  I  E  N  I  K  S   : G  N  V  K  I  D  F  D  K  C  F  S  T  H  A  M  M  P  N  L  R  Q  :  I  A  K  Y  L  R  Q  L  M  P  D  T  K  :  K  G  T  V  T  K  D  I  T  K  A  V  K  E  A  K  R  G  V  P  F  K  K  D  K  T  A  I  V  H  V  G  I  G  K  :  V  S  F  Q  E  E  A  L  C  E  N  I  G  A  F  V  H  E  L  L  R  Q  K  P  A  G  L  K  K   : S  S  K  Y  A  G  Y  V  N  T  V  H  L  C  S  T  :  M  G  P  S  F  P  V  T  I  Q  S  L  S  I  A  A  D  R  H  A  R  K  Y  V  Q  *  *  Y  L  N  R  R  S  N  F  N  L  I  P  S  L  N  R  S  N  F  N  L  V  L  C  C  T  H  L  F  K  F  L  D  F  P  T  L  E  K  R  C  F  L  V  I  F  V  S  S  P  L  L  *  *  S  M  P  S  P  L  L  E  T  P  F  *  L  K  I  H  Y  C  C  F  T  F  L  L  F  C  Q  R  K  * </second_frame>
            <third_frame>   L  L  S  S  L  N  P  H  Y  I  L  Q  T  E  L  L  S  V  H  L  S  P  L  *  E  L  Q  W  Q  P  S  N  Y  S  T  K  L  V  V  T  V  H  T  E  A  H  L  T  F  L  L  L  S  V  L  I  C  T  D  F  S  L  P  H  H  H  Q  K  T  R  I  R  I  T  Q  V  Q  F  N  P  F  P  T  P  L  R  T  R  Q  R  V  V  A  D  P  N  Q  I  T  Q  M  G  L  K  R  M  V  G  C  G  P  G  R  I  C  G  T  *  R  I  P  R  K  *  L  R  F  L  I  R  Q  G  *  R  R  Y  R  R  I  C  R  K  R  R  K  G  K  W  K  V  W  V  M  R  W  R  E  R  G  E  E  S  R  R  K  N  G  R  Q  *  G  E  L  *  M  L  K  R  K  *  F  R  F  Q  H  *  L  M  *  R  V  M  K  R  R  K  K  L  F  M  I  L  K  R  P  F  G  L  *  R :   L  M  P  R  R  N  L  M  K  L  W  K  L  M  L  F  *  L  L  I  C  V  E  V  I  * :   N  L  K  V  Q  W  L  F  L  M  G  L  E  R :   Y  I  G  L  L  F  L  L  K  E  L  L  L  M  K  P  E  K  Q  G  L  M  L  L  V  V  W  S  S  *  R  T  S  R  V  :  E  M  *  R  L  I  L  T  N  V  F  P  L  M  Q  *  C  R  T  *  D  R :   L  R  S  T  *  G  S  *  C  Q  I  L  R :   K  V  L  L  P  K  I  *  Q  K  Q  *  K  K  L  S  E  V  Y  R  S  K  K  I  K  L  Q  L  C  M  *  E  L  G  R :   *  V  F  K  K  R  H  C  V  K  T  L  V  H  L  Y  M  N  F  C  V  R  S  L  L  V  *  K  R  :  A  Q  N  M  L  V  M  *  I  Q  S  I  S  A  V  R :   W  V  H  H  F  L  L  Q  Y  S  R  Y  R  L  Q  Q  T  A  M  Q  G  S  M  F  N  D  S  I  *  I  E  D  P  I  L  T  *  Y  P  L  L  I  D  P  I  L  T  W  Y  Y  V  V  L  I  C  L  N  F  L  I  F  P  H  *  K  K  G  V  S  *  L  F  L  F  L  P  L  Y  C  N  D  L  C  P  A  L  C  L  K  P  L  F  N  S  K  F  T  T  V  A  S  H  F  Y  C  S  V  R  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6375" stop="7004"/>
                    <exon start="9111" stop="9188"/>
                    <exon start="9866" stop="9907"/>
                    <exon start="9994" stop="10099"/>
                    <exon start="12707" stop="12771"/>
                    <exon start="14265" stop="14303"/>
                    <exon start="14381" stop="14485"/>
                    <exon start="14590" stop="14677"/>
                    <exon start="14951" stop="14997"/>
                    <exon start="16180" stop="16257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFPKPSLHLANRTTISPPFTIVRAPMAAFKLLYQARRHCSYRSPSHFSPTFRSHLHRFLSSSSSSENPNSNNPSSIQPVSYTPKNPPESSSRPESNNPDGVKADGGLWTREDLRYLKDTPKIAPISYPTRVAPLPEDLPEEEKGKMEGMGDEMERERRRIEAQKRAAMRRVMNAEEEMISFPTLINVKSDEKKKKAVYDLKEAIRLVKANAKKKFDETLEAHVVLTPDMRRSDLKLEGTVAVPHGFGKVYRIAVFAEGAAADEAREAGADVVGGLELIENIKSGNVKIDFDKCFSTHAMMPNLRQIAKYLRQLMPDTKKGTVTKDITKAVKEAKRGVPFKKDKTAIVHVGIGKVSFQEEALCENIGAFVHELLRQKPAGLKKSSKYAGYVNTVHLCSTMGPSFPVTIQSLSIAADRHARKYVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13362" e_stop="14139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="13362" e_stop="14139" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13362" stop="14139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</gDNA_template>
            <first_frame> L  I  S  N  K  T  G  S  S  F  *  K  F  S  Q  A  Q  S  L  D  F  S  L  S  Y  L  R  G  E  N  I  L  S  G  L  L  P  D  T  S  F  L  C  Y  A  F  A  S  F  L  Q  A  N  T  F  V  E  A  E  Q  S  D  G  R  K  *  K  L  E  E  K  Q  R  L  F  S  P  C  K  K  N  E  *  L  V  F  L  F  N  S  F  *  T  D  I  *  I  E  V  D  E  L  E  I  L  C  L  K  L  Q  K  L  V  I  W  K  D  F  *  N  K  S  K  R  T  L  G  D  T  N  L  Y  A  T  I  V  M  W  T  Y  K  G  N  *  D  V  W  L  Y  L  V  F  P  Y  F  V  F  S  Q  E  I  W  F  C  I  W  S  R  N  T  G  K  G  L  T  A  V  I  N  V  Y  I  K  N  S  F  F  L  V  I  A  F  S  L  S  *  D  N  F  S  Y  E  V  L  L  K  K  L  C  G  S  I  M  *  K  *  L  Y  M  N  *  S  F  *  L  N  M  A  G  K  G  L  E  K  E  G  M  E  G  *  I  S  *  A  L  *  Q  G  G  Y  *  S  P  L  I  S  I  L  I  </first_frame>
            <second_frame>  *  Y  Q  I  R  R  V  P  L  F  K  N  S  L  R  H  S  P  L  I  F  L  S  P  T  *  E  G  R  I  S  F  P  A  C  C  R  T  H  H  F  F  A  M  L  L  L  P  F  C  K  L  T  P  L  W  K  Q  N  K  A  T  E  E  S  E  N  *  R  K  N  R  D  F  F  L  L  V  K  K  T  S  D  *  F  F  S  S  I  V  F  K  Q  T  Y  E  *  K  L  M  N  W  R  F  Y  V  *  N  Y  K  N  *  S  Y  G  K  I  S  E  I  K  V  K  E  H  L  G  T  P  I  Y  M  L  R  L  L  C  G  H  T  R  V  I  R  M  S  G  C  I  W  S  S  H  I  L  Y  L  V  K  K  Y  G  F  V  F  G  Q  E  I  R  G  K  D  *  Q  L  L  L  M  F  T  S  R  I  V  F  S  *  *  L  H  S  L  Y  P  R  I  I  L  V  M  K  C  Y  *  R  S  C  V  E  V  L  C  K  N  N  Y  T  *  I  D  L  F  S  *  I  W  L  G  R  D  *  R  R  K  G  W  R  V  E  L  V  K  H  C  N  K  V  A  I  E  V  L  *  F  Q  F  *  Y </second_frame>
            <third_frame>   D  I  K  *  D  G  F  L  F  L  K  I  L  S  G  T  V  P  *  F  F  S  L  L  L  K  R  G  E  Y  P  F  R  L  A  A  G  H  I  I  S  L  L  C  F  C  F  L  F  A  S  *  H  L  C  G  S  R  T  K  R  R  K  K  V  K  I  R  G  K  T  E  T  F  F  S  L  *  K  K  R  V  T  S  F  S  L  Q  *  F  L  N  R  H  M  N  R  S  *  *  I  G  D  S  M  F  E  T  T  K  T  S  H  M  E  R  F  L  K  *  K  *  K  N  T  W  G  H  Q  F  I  C  Y  D  C  Y  V  D  I  Q  G  *  L  G  C  L  V  V  S  G  L  P  I  F  C  I  *  S  R  N  M  V  L  Y  L  V  K  K  Y  G  E  R  I  D  S  C  Y  *  C  L  H  Q  E  *  F  F  P  S  D  C  I  L  F  I  L  G  *  F  *  L  *  S  V  I  E  E  A  V  W  K  Y  Y  V  K  I  I  I  H  E  L  I  F  L  V  K  Y  G  W  E  G  I  R  E  G  R  D  G  G  L  N  *  L  S  I  V  T  R  W  L  L  K  S  F  N  F  N  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23060" PGL_stop="23621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23060" e_stop="23481"/>
            <exon e_start="23615" e_stop="23621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.443" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23060" e_stop="23481" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.443">
            <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="23615" e_stop="23621" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23060" stop="23481"/>
              <exon start="23615" stop="23621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA : AGATAAA</gDNA_template>
            <first_frame> R  A  G  N  F  D  F  G  G  C  H  S  L  T  G  S  S  I  L  I  L  D  V  V  E  T  R  K  T  N  L  F  Y  C  P  *  L  V  F  M  M  S  S  P  *  Y  K  T  W  V  I  D  C  I  S  S  M  T  P  E  S  R  T  K  S  R  *  R  L  *  K  L  V  E  E  *  K  *  F  W  I  P  E  T  K  K  W  C  C  V  A  G  V  *  F  *  G  I  L  F  L  D  G  T  G  Y  Q  C  P  I  S  I  T  *  E  I  C  H  S  F  M  I  I  R  N  I  F  V  I  F  S  L  N  K  L  N  C  C  S  S  K :   D  K </first_frame>
            <second_frame>  E  L  V  I  S  I  L  G  V  V  T  A  S  Q  V  R  P  F  *  S  L  M  W  S  K  P  E  K  L  T  C  F  I  V  R  D  S  C  L  *  *  V  H  P  N  I  R  L  G  *  *  I  V  S  V  Q  *  R  Q  N  Q  G  Q  N  L  G  E  G  C  K  N  *  L  K  N  E  S  S  S  G  Y  Q  R  P  R  S  G  V  V  L  Q  V  Y  S  F  K  E  Y  F  F  L  T  A  Q  A  I  N  V  P  *  V  *  L  R  K  S  V  I  H  L  *  *  F  G  I  Y  L  L  F  F  P  *  I  N  *  I  V  V  R  Q   : K  I   </second_frame>
            <third_frame>   S  W  *  F  R  F  W  G  L  S  Q  P  H  R  F  V  H  S  N  P  *  C  G  R  N  Q  K  N  *  L  V  L  L  S  V  T  R  V  Y  D  E  F  T  L  I  *  D  L  G  D  R  L  Y  Q  F  N  D  A  R  I  K  D  K  I  *  V  K  V  V  K  I  S  *  R  M  K  V  V  L  D  T  R  D  Q  E  V  V  L  C  C  R  C  I  V  L  R  N  T  F  S  *  R  H  R  L  S  M  S  H  K  Y  N  L  G  N  L  S  F  I  Y  D  N  S  E  Y  I  C  Y  F  F  L  E  *  I  K  L  L  F  V  K  :  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25443" PGL_stop="27075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25443" e_stop="25861"/>
            <exon e_start="26520" e_stop="27075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25443" e_stop="25861" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26520" e_stop="27075" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25861"/>
              <exon start="26520" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG : GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R :   Y  R  H  R  L  I  L  H  L  H  D  R  G  G  Q  *  I  R  A  T  S  L  C  F  L  H  L  W  S  S  S  S  W  T  S  V  P  Y  T  E  P  Y  *  *  L  W  K  R  Y  Y  *  L  Q  R  *  T  *  S  R  T  F  Y  T  N  I  F  Q  S  I  S  C  K  M  F  A  L  C  R  V  R  Q  G  R  R  F  R  H  V  S  *  P  Y  K  K  V  *  R  N  Q  R  Y  N  D  *  Y  L  S  *  T  G  F  S  R  D  K  L  P  L  T  R  Q  E  Y  T  T  G  L  P  C  G  T  C  I  E  P  *  *  C  S  R  *  Q  L  E  F  I  R  P  E  Y  D  E  M  V  R  *  S  T  H  F  I  C  S  V  P  L  F  W  *  R  R  K  F  Y  D  R  A  S  *  G  N  I  I  C  S </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A   : G  I  V  I  D  L  F  C  T  S  M  I  E  V  A  N  E  F  E  L  P  A  Y  V  F  Y  T  C  G  A  A  P  L  G  L  Q  F  H  I  Q  S  L  T  D  D  F  G  R  D  I  T  N  Y  K  D  E  P  E  A  E  L  S  I  P  T  Y  F  N  P  F  P  A  K  C  L  P  S  V  A  L  D  K  E  G  G  S  A  M  F  L  D  L  T  R  R  F  R  E  T  K  G  I  M  I  N  T  F  L  E  L  D  S  H  A  I  N  F  L  S  Q  D  K  N  I  P  P  V  Y  P  V  G  P  V  L  N  L  N  N  V  Q  G  D  N  L  S  L  S  D  Q  N  M  M  K  W  L  D  D  Q  P  T  S  S  V  V  F  L  C  F  G  S  G  G  S  F  T  I  E  Q  V  K  E  I  S  Y  A   </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  :  V  S  S  S  T  Y  F  A  P  P  *  *  R  W  P  M  N  S  S  Y  Q  P  M  F  S  T  P  V  E  Q  L  L  L  D  F  S  S  I  Y  R  A  L  L  M  T  L  E  E  I  L  L  I  T  K  M  N  L  K  Q  N  F  L  Y  Q  H  I  S  I  H  F  L  Q  N  V  C  P  L  S  R  *  T  R  K  E  V  P  P  C  F  L  T  L  Q  E  G  L  E  K  P  K  V  *  *  L  I  P  F  L  N  W  I  L  T  R  *  T  S  S  H  K  T  R  I  Y  H  R  F  T  L  W  D  L  Y  *  T  L  I  M  F  K  V  T  T  *  V  Y  Q  T  R  I  *  *  N  G  *  M  I  N  P  L  H  L  *  C  S  S  V  L  V  A  E  E  V  L  R  *  S  K  L  R  K  Y  H  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25468" stop="25861"/>
                    <exon start="26520" stop="27073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGIVIDLFCTSMIEVANEFELPAYVFYTCGAAPLGLQFHIQSLTDDFGRDITNYKDEPEAELSIPTYFNPFPAKCLPSVALDKEGGSAMFLDLTRRFRETKGIMINTFLELDSHAINFLSQDKNIPPVYPVGPVLNLNNVQGDNLSLSDQNMMKWLDDQPTSSVVFLCFGSGGSFTIEQVKEISYA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25746" e_stop="26402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25746" e_stop="26402" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25746" stop="26402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</gDNA_template>
            <first_frame> C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R  Y  V  F  Q  I  N  F  M  C  P  R  L  *  Y  S  N  K  V  C  C  L  D  S  L  K  M  L  M  D  M  C  V  G  Y  C  K  S  S  V  H  N  F  G  E  I  E  H  T  T  C  D  L  *  I  R  C  M  S  S  L  S  *  I  W  L  L  L  Q  K  Q  K  D  W  Y  F  L  P  S  Q  L  Y  D  T  F  K  H  F  E  R  Q  I  V  F  L  K  A  *  Y  A  F  S  S  I  K  N  Y  *  L  L  *  L  I  V  C  F  K  Y  K  F  Y  L  Q  K  L  K  D  Y  M  P  E  F  M  V  K  I  *  K  F  G  S  R  N  P  N  D  V  A  *  P  G  E  Y  F  K  L  K  G  V  L  H  Y  Y  T  N  L  L  N  L  T  R  L  E  N  V  F  Q  *  L  Y  C </first_frame>
            <second_frame>  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A  G  M  Y  F  K  L  T  L  C  V  Q  G  F  D  T  V  T  R  Y  V  A  W  T  L  *  K  C  *  W  I  C  V  S  D  T  A  K  V  V  Y  I  I  L  E  R  L  N  I  Q  L  V  I  Y  R  L  D  A  C  H  H  C  H  E  F  G  C  Y  Y  K  N  K  K  I  G  T  S  F  P  P  N  F  M  I  L  L  S  I  S  R  D  K  *  F  F  S  K  H  D  M  P  F  Q  V  L  K  I  I  N  Y  C  D  L  *  Y  V  S  N  I  N  F  I  Y  K  S  L  K  I  I  C  P  N  S  W  S  K  F  K  S  L  A  L  E  I  Q  M  M  S  H  D  R  G  S  I  L  S  *  K  G  C  C  T  T  T  P  T  F  S  I  *  R  D  *  K  M  Y  F  N  D  F  I   </second_frame>
            <third_frame>   F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  V  C  I  S  N  *  L  Y  V  S  K  A  L  I  Q  *  Q  G  M  L  L  G  L  F  K  N  V  D  G  Y  V  C  R  I  L  Q  K  *  C  T  *  F  W  R  D  *  T  Y  N  L  *  F  I  D  *  M  H  V  I  I  V  M  N  L  A  A  T  T  K  T  K  R  L  V  L  P  S  L  P  T  L  *  Y  F  *  A  F  R  E  T  N  S  F  S  Q  S  M  I  C  L  F  K  Y  *  K  L  L  I  I  V  T  Y  S  M  F  Q  I  *  I  L  F  T  K  A  *  R  L  Y  A  R  I  H  G  Q  N  L  K  V  W  L  S  K  S  K  *  C  R  M  T  G  G  V  F  *  V  E  R  G  V  A  L  L  H  Q  P  S  Q  F  N  A  T  R  K  C  I  S  M  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27800" PGL_stop="28382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27800" e_stop="28382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27800" e_stop="28382" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27800" stop="28382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328502" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</gDNA_template>
            <first_frame> Y  F  G  V  P  M  A  T  W  P  M  Y  A  E  Q  Q  A  N  A  F  Q  L  V  K  D  L  E  M  A  V  E  L  K  M  D  Y  R  K  E  P  T  G  K  M  G  Q  K  V  I  V  K  A  E  E  I  E  K  A  I  R  E  L  M  D  P  E  N  K  I  R  M  K  V  K  E  M  K  E  K  S  R  A  A  T  T  E  G  G  S  S  Y  T  S  I  G  S  F  I  Q  S  I  M  E  N  T  P  *  L  A  A  L  I  C  F  S  L  N  L  G  S  I  R  N  N  L  S  T  S  R  R  *  K  *  G  L  H  T  V  Y  S  P  L  T  H  L  W  I  T  W  S  M  L  L  L  L  L  *  F  D  R  Y  S  W  L  C  T  L  V  S  K  L  L  A  K  V  A  R  A  E  H  D  Q  D  C  I  S  C  Y  N  I  F  F  *  L  </first_frame>
            <second_frame>  I  L  E  C  Q  W  L  L  G  Q  C  T  Q  S  S  K  Q  M  H  F  S  W  L  R  I  W  K  W  Q  S  S  *  R  W  I  T  G  R  N  Q  Q  G  R  W  A  K  K  L  *  *  K  Q  R  R  L  R  K  Q  *  E  N  L  W  T  L  K  I  K  F  G  *  K  *  R  R  *  K  R  R  A  E  Q  Q  P  R  K  E  A  L  L  T  L  L  L  E  V  S  S  R  V  S  W  R  I  L  H  D  *  L  L  *  Y  V  F  P  *  T  *  G  L  S  E  T  T  S  L  P  L  E  G  R  S  K  V  C  I  Q  F  T  L  P  *  P  T  C  G  L  R  G  V  C  C  C  C  C  C  N  L  I  D  I  V  G  Y  V  P  S  F  L  S  Y  *  Q  R  L  P  V  L  S  T  T  K  I  V  L  V  V  I  I  S  F  F  S  * </second_frame>
            <third_frame>   F  W  S  A  N  G  Y  L  A  N  V  R  R  A  A  S  K  C  I  S  V  G  *  G  F  G  N  G  S  R  A  K  D  G  L  Q  E  G  T  N  R  E  D  G  P  K  S  Y  S  E  S  R  G  D  *  E  S  N  K  R  T  Y  G  P  *  K  *  N  S  D  E  S  E  G  D  E  R  E  E  Q  S  S  N  H  G  R  R  L  F  L  H  F  Y  W  K  F  H  P  E  Y  H  G  E  Y  S  M  I  S  C  F  D  M  F  F  L  E  P  R  V  Y  Q  K  Q  P  L  Y  L  *  K  V  E  V  R  F  A  Y  S  L  L  S  P  D  P  L  V  D  Y  V  E  Y  V  V  V  V  V  V  I  *  S  I  *  L  V  M  Y  P  R  F  *  V  T  S  K  G  C  P  C  *  A  R  P  R  L  Y  *  L  L  *  Y  L  F  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27800" stop="28120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFGVPMATWPMYAEQQANAFQLVKDLEMAVELKMDYRKEPTGKMGQKVIVKAEEIEKAIRELMDPENKIRMKVKEMKEKSRAATTEGGSSYTSIGSFIQSIMENTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32657" PGL_stop="30665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32657" e_stop="32463"/>
            <exon e_start="31227" e_stop="30665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32657" e_stop="32463" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31227" e_stop="30665" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32657" stop="32463"/>
              <exon start="31227" stop="30665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG : ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</gDNA_template>
            <first_frame> V  L  *  L  L  A  D  N  Y  F  P  L  P  L  K  K  V  K  P  V  P  L  E  S  L  S  S  R  C  S  Q  F  V  A  V  A  V  A  V  A  E  A  T  V  P  H  V  A  V  A  A  A  A  A  A  V  P  H  I  H  P  A  I  S  K  :  I  L  Y  H  I  V  K  G  C  S  F  *  K  T  S  Y  L  L  H  *  T  I  *  T  Q  S  L  L  F  W  T  K  G  G  *  I  *  K  G  N  T  R  H  V  W  H  *  L  Q  M  R  Q  L  R  F  T  F  K  C  G  V  M  N  V  M  F  L  N  L  G  I  S  S  G  *  K  M  A  S  F  L  I  F  A  I  T  A  I  T  M  Y  Y  G  Q  V  S  E  A  R  Q  K  K  W  E  S  L  P  W  P  M  W  R  N  Q  T  *  V  R  Y  I  G  S  L  I  R  R  I  L  R  Y  I  C  Q  W  I  L  L  L  T  F  H  Q  H  I  E  Y  W  A  N  L  Y  L  T  G  T  F  L  *  T  L  F  H  D  G  C  L  N  M  T  R  S  S  L  C  *  S  I  Q  F  R  F  F  E  G  S  Y  D   </first_frame>
            <second_frame>  Y  F  N  C  W  L  T  I  I  F  P  F  P  S  K  R  *  N  P  S  L  S  S  L  C  L  H  A  A  R  N  S  S  P  L  P  W  P  S  Q  K  Q  Q  C  R  T  S  P  S  Q  Q  Q  Q  Q  Q  C  R  T  S  I  L  R  S  Q  R :   Y  C  I  I  L  S  K  D  A  V  S  K  R  H  R  T  C  C  I  E  Q  Y  K  H  K  V  Y  C  F  G  Q  R  E  D  R  F  R  R  A  T  Q  D  M  F  G  T  S  C  R  *  D  S  C  G  S  L  S  N  V  G  *  *  M  *  C  F  *  T  W  G  Y  H  P  V  R  K  W  H  L  F  L  Y  S  Q  *  P  Q  *  P  C  T  T  G  R  *  A  R  Q  G  R  K  S  G  R  V  Y  H  G  L  C  G  E  T  K  H  E  *  D  T  L  G  P  *  S  E  E  S  *  D  I  F  A  S  G  F  Y  F  L  H  F  I  N  T  L  S  I  G  Q  T  Y  I  *  L  V  L  S  F  K  L  S  S  M  M  V  A  *  I  *  L  D  R  V  Y  V  N  L  F  S  S  D  S  L  K  G  L  M  M  </second_frame>
            <third_frame>   T  L  I  V  G  *  Q  L  F  S  P  S  P  Q  K  G  E  T  R  P  S  R  V  S  V  F  T  L  L  A  I  R  R  R  C  R  G  R  R  R  S  N  S  A  A  R  R  R  R  S  S  S  S  S  S  A  A  H  P  S  C  D  L  K   : D  I  V  S  Y  C  Q  R  M  Q  F  L  K  D  I  V  P  A  A  L  N  N  I  N  T  K  F  I  V  L  D  K  G  R  I  D  L  E  G  Q  H  K  T  C  L  A  L  V  A  D  E  T  A  A  V  H  F  Q  M  W  G  D  E  C  D  V  F  E  P  G  D  I  I  R  L  E  N  G  I  F  S  Y  I  R  N  N  R  N  N  H  V  L  R  A  G  K  R  G  K  A  E  K  V  G  E  F  T  M  A  Y  V  E  K  P  N  M  S  E  I  H  W  V  P  D  P  K  N  P  K  I  Y  L  P  V  D  F  T  S  Y  I  S  S  T  H  *  V  L  G  K  L  I  S  D  W  Y  F  P  L  N  S  L  P  *  W  L  L  E  Y  D  S  I  E  F  M  L  I  Y  S  V  Q  I  L  *  R  V  L  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32637" stop="32463"/>
                    <exon start="31227" stop="30794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFSPSPQKGETRPSRVSVFTLLAIRRRCRGRRRSNSAARRRRSSSSSSAAHPSCDLKDIVSYCQRMQFLKDIVPAALNNINTKFIVLDKGRIDLEGQHKTCLALVADETAAVHFQMWGDECDVFEPGDIIRLENGIFSYIRNNRNNHVLRAGKRGKAEKVGEFTMAYVEKPNMSEIHWVPDPKNPKIYLPVDFTSYISSTH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35972" PGL_stop="34764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35972" e_stop="34764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="35972" e_stop="34764" e_length="1209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="34764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</gDNA_template>
            <first_frame> R  E  N  A  K  *  Y  E  K  L  K  K  A  C  V  *  R  Y  *  V  Q  G  S  *  R  *  E  C  *  N  E  G  R  E  R  *  S  *  H  L  H  S  T  *  K  C  F  A  S  Y  E  M  S  I  *  S  Y  E  N  G  G  Y  C  *  S  I  L  G  I  T  C  S  G  R  N  *  *  E  R  N  R  R  K  C  G  G  E  R  S  R  R  Y  R  K  H  *  M  Q  C  T  T  G  N  *  C  F  C  R  S  G  R  K  *  R  S  S  R  S  H  R  *  *  *  G  *  R  K  A  Q  M  R  *  I  N  A  R  N  R  G  T  R  *  R  R  Q  *  D  E  G  T  C  S  S  S  C  S  R  S  K  L  H  C  *  S  T  P  *  I  R  E  K  R  R  R  R  R  Q  Q  H  S  E  F  F  I  F  L  R  K  R  R  R  *  N  I  G  R  R  R  E  V  Q  I  N  Y  *  E  G  D  R  R  N  T  L  V  R  T  H  *  *  R  R  C  K  T  N  S  T  R  T  Q  T  R  R  R  S  K  I  *  C  S  I  F  K  Q  *  K  R  K  R  I  E  K  T  T  E  R  I  N  S  S  R  L  L  A  S  N  D  V  *  A  Q  A  I  H  G  G  F  *  G  N  M  G  I  Q  Q  H  R  S  K  T  S  *  N  S  D  D  K  E  E  E  E  *  N  S  R  G  S  K  E  K  A  K  H  *  Q  E  *  T  T  T  S  P  P  P  T  T  K  V  I  V  F  F  P  G  D  R  S  F  A  G  D  I  H  G  N  D  D  R  A  E  T  G  K  R  S  G  L  R  A  V  S  V  D  K  V  Q  V  G  A  D  E  D  G  G  G  G  D  G  *  A  C  T  G  D  L  F  L  E  E  Y  E  D  *  A  T  S  T  S  Y  I  W  I  R </first_frame>
            <second_frame>  E  K  M  Q  S  S  M  R  S  S  R  R  H  V  F  E  G  I  E  F  K  D  H  D  D  E  S  V  E  M  K  E  E  K  G  R  V  S  I  C  I  P  P  K  N  A  L  L  L  M  R  C  R  S  D  P  M  K  M  A  D  I  A  N  R  F  W  E  S  P  A  R  E  E  T  N  E  K  E  I  G  E  N  A  E  V  K  E  V  E  D  T  E  N  T  E  C  N  V  L  Q  E  T  S  V  S  V  D  L  V  E  N  E  E  A  V  E  V  T  D  S  S  K  D  E  E  K  L  K  C  D  E  L  T  P  E  T  E  E  Q  D  E  E  D  S  E  M  K  G  L  V  A  V  A  A  V  E  V  N  S  I  V  D  Q  L  L  E  S  E  K  K  E  E  E  E  D  S  S  I  Q  S  F  S  S  F  S  E  N  E  E  D  E  T  L  E  E  E  E  R  F  K  S  I  I  K  K  V  I  E  E  T  L  L  L  E  H  I  D  R  E  D  A  K  Q  I  Q  H  E  H  K  H  E  E  E  A  K  S  D  A  V  F  S  N  N  E  N  E  K  E  S  R  K  Q  Q  N  E  S  I  L  P  D  C  L  L  L  M  M  C  E  P  K  L  S  M  E  V  S  K  E  T  W  V  Y  S  S  T  E  V  K  Q  A  K  T  V  T  T  K  K  K  K  N  E  I  P  E  D  P  K  R  R  R  S  I  D  K  S  K  Q  Q  H  L  L  L  Q  P  P  R  S  S  C  S  F  P  A  T  G  V  S  P  A  I  S  M  A  T  M  I  E  Q  K  L  V  N  A  V  A  Y  E  P  L  V  L  T  R  C  K  S  E  P  M  R  T  V  A  G  G  T  A  K  L  V  P  E  T  C  F  W  K  N  M  K  I  E  P  H  R  R  A  T  F  G  F   </second_frame>
            <third_frame>   R  K  C  K  V  V  *  E  A  Q  E  G  M  C  L  K  V  L  S  S  R  I  M  T  M  R  V  L  K  *  R  K  R  K  V  E  L  A  F  A  F  H  L  K  M  L  C  F  L  *  D  V  D  L  I  L  *  K  W  R  I  L  L  I  D  S  G  N  H  L  L  G  K  K  L  M  R  K  K  S  E  K  M  R  R  *  K  K  *  K  I  Q  K  T  L  N  A  M  Y  Y  R  K  L  V  F  L  *  I  W  *  K  M  K  K  Q  *  K  S  Q  I  V  V  R  M  K  K  S  S  N  A  M  N  *  R  Q  K  Q  R  N  K  M  K  K  T  V  R  *  R  D  L  *  Q  *  L  Q  *  K  *  T  P  L  L  I  N  S  L  N  Q  R  K  K  K  K  K  K  T  A  A  F  R  V  F  H  L  S  Q  K  T  K  K  M  K  H  W  K  K  K  R  G  S  N  Q  L  L  R  R  *  S  K  K  H  S  C  *  N  T  L  I  E  K  M  Q  N  K  F  N  T  N  T  N  T  K  K  K  Q  N  L  M  Q  Y  F  Q  T  M  K  T  K  K  N  R  E  N  N  R  T  N  Q  F  F  Q  I  A  C  F  *  *  C  V  S  P  S  Y  P  W  R  F  L  R  K  H  G  Y  T  A  A  P  K  *  N  K  L  K  Q  *  R  Q  R  R  R  R  M  K  F  P  R  I  Q  R  E  G  E  A  L  T  R  V  N  N  N  I  S  S  S  N  H  Q  G  H  R  V  L  S  R  R  P  E  F  R  R  R  Y  P  W  Q  R  *  *  S  R  N  W  *  T  Q  W  L  T  S  R  *  C  *  Q  G  A  S  R  S  R  *  G  R  W  R  G  G  R  L  S  L  Y  R  R  L  V  S  G  R  I  *  R  L  S  H  I  D  E  L  H  L  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35971" stop="34766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMQSSMRSSRRHVFEGIEFKDHDDESVEMKEEKGRVSICIPPKNALLLMRCRSDPMKMADIANRFWESPAREETNEKEIGENAEVKEVEDTENTECNVLQETSVSVDLVENEEAVEVTDSSKDEEKLKCDELTPETEEQDEEDSEMKGLVAVAAVEVNSIVDQLLESEKKEEEEDSSIQSFSSFSENEEDETLEEEERFKSIIKKVIEETLLLEHIDREDAKQIQHEHKHEEEAKSDAVFSNNENEKESRKQQNESILPDCLLLMMCEPKLSMEVSKETWVYSSTEVKQAKTVTTKKKKNEIPEDPKRRRSIDKSKQQHLLLQPPRSSCSFPATGVSPAISMATMIEQKLVNAVAYEPLVLTRCKSEPMRTVAGGTAKLVPETCFWKNMKIEPHRRATFGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36768" PGL_stop="36052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36768" e_stop="36052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36768" e_stop="36052" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36768" stop="36052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</gDNA_template>
            <first_frame> K  K  T  Q  L  L  Y  T  Y  R  P  P  N  P  W  L  P  T  T  A  I  P  R  N  H  Y  H  I  T  E  N  S  F  I  S  S  F  L  Y  T  F  F  F  K  *  N  S  P  N  P  S  L  V  L  A  M  L  G  M  T  H  L  L  L  F  P  L  L  S  V  G  S  L  K  L  M  A  V  L  K  A  D  N  P  Q  L  R  F  L  L  P  P  E  R  N  E  G  R  V  L  I  T  R  N  L  R  L  R  R  *  L  V  L  V  R  *  K  *  R  R  R  R  K  L  G  K  H  G  I  C  L  I  E  G  V  I  *  V  S  G  S  W  K  K  K  K  G  E  F  *  F  R  I  R  G  V  L  V  C  I  C  R  R  K  I  N  V  R  W  R  I  E  I  R  D  G  Y  I  C  Q  *  R  Y  M  K  L  *  E  S  L  A  V  C  F  H  V  G  L  R  V  F  R  M  R  K  E  N  N  K  I  K  L  M  D  L  E  M  L  I  I  I  M  G  R  G  D  V  R  M  L  L  L  D  G  *  L  H  Y  K </first_frame>
            <second_frame>  K  K  H  S  F  S  T  L  T  D  P  Q  I  H  G  Y  L  Q  Q  Q  Y  Q  E  T  I  I  T  L  L  K  T  P  S  S  L  L  F  C  I  L  S  S  S  N  E  T  H  Q  I  H  P  *  S  *  P  C  S  A  *  P  T  S  Y  S  S  H  F  S  Q  S  E  A  *  S  *  W  Q  Y  *  R  R  T  I  P  S  Y  V  S  Y  Y  H  R  K  E  T  R  V  E  F  *  *  P  G  T  F  V  S  E  G  D  L  Y  W  S  G  E  N  E  D  E  E  E  S  *  A  N  T  E  F  V  *  *  K  E  *  Y  K  F  Q  E  V  G  R  R  K  K  G  S  F  D  S  E  S  E  E  F  *  C  A  F  A  G  A  R  S  M  C  G  G  A  *  K  S  E  M  G  T  F  A  S  N  D  I  *  S  F  E  R  V  *  L  F  V  S  M  S  V  F  V  F  F  E  *  E  R  K  T  T  R  *  S  *  W  I  *  R  C  *  *  *  *  W  A  E  E  M  *  G  C  C  C  *  M  A  S  C  I  T   </second_frame>
            <third_frame>   K  N  T  A  S  L  H  L  Q  T  P  K  S  M  A  T  Y  N  S  N  T  K  K  P  L  S  H  Y  *  K  L  L  H  L  F  F  F  V  Y  F  L  L  Q  M  K  L  T  K  S  I  L  S  P  S  H  A  R  H  D  P  P  L  T  L  P  T  S  L  S  R  K  L  K  A  N  G  S  I  K  G  G  Q  S  P  A  T  F  P  T  T  T  G  K  K  R  G  S  S  F  D  N  P  E  P  S  S  P  K  V  T  C  I  G  Q  V  K  M  K  T  K  K  K  V  R  Q  T  R  N  L  S  N  R  R  S  D  I  S  F  R  K  L  E  E  E  K  R  G  V  L  I  Q  N  Q  R  S  S  S  V  H  L  Q  A  Q  D  Q  C  A  V  A  H  R  N  Q  R  W  V  H  L  P  V  T  I  Y  E  A  L  R  E  F  S  C  L  F  P  C  R  S  S  C  F  S  N  E  K  G  K  Q  Q  D  K  V  N  G  S  R  D  V  D  N  N  N  G  Q  R  R  C  E  D  V  V  A  R  W  L  V  A  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36679" stop="36053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLHLFFFVYFLLQMKLTKSILSPSHARHDPPLTLPTSLSRKLKANGSIKGGQSPATFPTTTGKKRGSSFDNPEPSSPKVTCIGQVKMKTKKKVRQTRNLSNRRSDISFRKLEEEKRGVLIQNQRSSSVHLQAQDQCAVAHRNQRWVHLPVTIYEALREFSCLFPCRSSCFSNEKGKQQDKVNGSRDVDNNNGQRRCEDVVARWLVALQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47151" PGL_stop="40222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47151" e_stop="46838"/>
            <exon e_start="45409" e_stop="45182"/>
            <exon e_start="44865" e_stop="44792"/>
            <exon e_start="43276" e_stop="43117"/>
            <exon e_start="42969" e_stop="42850"/>
            <exon e_start="42739" e_stop="42631"/>
            <exon e_start="40912" e_stop="40222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47151" e_stop="46838" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45409" e_stop="45182" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44865" e_stop="44792" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43276" e_stop="43117" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42969" e_stop="42850" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42739" e_stop="42631" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40912" e_stop="40222" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47151" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43117"/>
              <exon start="42969" stop="42850"/>
              <exon start="42739" stop="42631"/>
              <exon start="40912" stop="40222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA : ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG : GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG : GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG : GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG : GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> T  L  F  H  *  T  I  Q  Q  Y  A  S  I  F  P  K  S  L  N  L  L  L  N  F  F  A  K  Q  *  S  D  *  D  I  G  G  L  R  L  V  L  V  M  E  E  F  R  I  *  V  L  A  K  E  V  L  L  Q  A  V  E  L  C  C  C  R  D  L  V  D  R  R  C  L  S  F  V  T  M  Y  L  F  L  I  *  N  L  I  K  C  L  F  V  L  V  L  F  Q  S  I  R  L  I  P  E :   C  D  Q  A  M  D  V  Q  F  L  N  H  F  Y  H  *  F  W  A  E  I  *  V  V  K  L  Q  L  L  E  I  L  S  S  H  L  Q  L  G  R  M  Y  L  V  L  C  I  Q  P  L  *  G  V  L  I  L  T  M  L  F  L  R  K  M  N  L  L  Q  S  R  D  H  F  H  M  W :   K  P  V  L  S  L  L  L  L  *  L  L  G  V  R  *  K  V  L  P  E  *  E  R   : G  I  G  Y  W  S  *  V  E  E  E  Q  *  V  S  L  Q  F  S  L  L  W  L  Q  A  A  M  F  L  L  R  V  E  E  R  V  *  V  A  F  *  Q  P  V  L  S  R  P  L  T  I  P  V  R :   M  L  K  *  H  L  R  G  I  L  M  L  S  W  I  Q  L  V  C  Q  I  Q  R  E  W  A  L  A  F  *  R  K  V  D  T  T  *  R  Y  R :   G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </first_frame>
            <second_frame>  H  S  F  T  E  P  F  N  N  M  H  P  F  S  P  N  H  *  I  C  C  S  I  S  L  Q  N  N  D  P  I  E  I  S  E  D  *  D  W  Y  W  *  W  R  N  F  E  F  R  F  W  Q  K  R  Y  C  Y  K  L  *  S  C  V  V  A  A  I  W  W  T  G  D  A  *  V  S  *  Q  C  I  C  S  *  S  K  T  *  S  S  A  C  S  C  S  C  C  F  N  Q  S  A  *  Y  Q   : N  A  I  R  L  W  T  F  N  F  *  T  T  S  T  I  D  F  G  P  R  Y  K  W  *  S  C  S  C  W  K  F  C  Q  V  T  Y  S  W  A  G  C  I  W  C  S  A  S  N  R  C  E  G  Y  L  Y  *  L  C  Y  S  C  G  R  *  T  C  S  K  A  G  I  T  F  T  C   : G  S  Q  C  Y  P  F  C  C  S  N  C  L  A  C  A  K  K  Y  C  Q  N  K  R  G  :  A  *  G  I  G  H  R  W  R  R  S  S  R  F  L  C  N  S  A  C  C  G  C  R  L  P  C  F  Y  Y  V  W  R  R  E  Y  K  S  H  F  S  S  R  C  *  A  G  H  *  L  Y  Q  *   : G  C  *  S  S  T  *  G  A  F  *  C  C  L  G  Y  N  W  C  A  R  Y  R  E  N  G  H  *  P  F  K  E  R  W  T  L  H  D  V  T   : G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </second_frame>
            <third_frame>   T  L  S  L  N  H  S  T  I  C  I  H  F  P  Q  I  T  E  F  A  A  Q  F  L  C  K  T  M  I  R  L  R  Y  R  R  I  E  I  G  T  G  D  G  G  I  S  N  L  G  F  G  K  R  G  I  V  T  S  C  R  A  V  L  L  P  R  F  G  G  P  E  M  L  E  F  R  D  N  V  S  V  P  D  L  K  P  N  Q  V  L  V  R  A  R  A  V  S  I  N  P  L  D  T  R  :  M  R  S  G  Y  G  R  S  I  F  E  P  L  L  P  L  I  L  G  R  D  I  S  G  E  V  A  A  V  G  N  S  V  K  S  L  T  V  G  Q  D  V  F  G  A  L  H  P  T  A  V  R  G  T  Y  T  D  Y  A  I  L  A  E  D  E  L  A  P  K  P  G  S  L  S  H  V  :  E  A  S  A  I  P  F  A  A  L  T  A  W  R  A  L  K  S  T  A  R  I  R  E  G :   H  R  V  L  V  I  G  G  G  G  A  V  G  F  S  A  I  Q  L  A  V  A  A  G  C  H  V  S  T  T  C  G  G  E  S  I  S  R  I  L  A  A  G  A  E  Q  A  I  D  Y  T  S  E  :  D  A  E  V  A  L  K  G  H  F  D  A  V  L  D  T  I  G  V  P  D  T  E  R  M  G  I  S  L  L  K  K  G  G  H  Y  M  T  L  Q  :  G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47149" stop="46838"/>
                    <exon start="45409" stop="45182"/>
                    <exon start="44865" stop="44792"/>
                    <exon start="43276" stop="43117"/>
                    <exon start="42969" stop="42850"/>
                    <exon start="42739" stop="42631"/>
                    <exon start="40912" stop="40731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLNHSTICIHFPQITEFAAQFLCKTMIRLRYRRIEIGTGDGGISNLGFGKRGIVTSCRAVLLPRFGGPEMLEFRDNVSVPDLKPNQVLVRARAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGNSVKSLTVGQDVFGALHPTAVRGTYTDYAILAEDELAPKPGSLSHVEASAIPFAALTAWRALKSTARIREGHRVLVIGGGGAVGFSAIQLAVAAGCHVSTTCGGESISRILAAGAEQAIDYTSEDAEVALKGHFDAVLDTIGVPDTERMGISLLKKGGHYMTLQGEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="54723" PGL_stop="50274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54723" e_stop="54558"/>
            <exon e_start="54480" e_stop="54408"/>
            <exon e_start="54338" e_stop="54260"/>
            <exon e_start="52947" e_stop="52863"/>
            <exon e_start="52396" e_stop="52278"/>
            <exon e_start="51068" e_stop="50980"/>
            <exon e_start="50906" e_stop="50842"/>
            <exon e_start="50726" e_stop="50648"/>
            <exon e_start="50400" e_stop="50274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="54723" e_stop="54558" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54480" e_stop="54408" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54338" e_stop="54260" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52947" e_stop="52863" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52396" e_stop="52278" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51068" e_stop="50980" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50906" e_stop="50842" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50726" e_stop="50648" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.969">
            <gDNA_exon_boundary e_start="50400" e_stop="50274" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54723" stop="54558"/>
              <exon start="54480" stop="54408"/>
              <exon start="54338" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52396" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> I  A  G  A  F  *  V  L  Q  P  F  T  C  W  E  L  K  A  D  V  K  V  I  E  P  P  R  G  E  E  D  K  N  G  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  *  Q  G  H  F  R  S  F  N  P  S  H  V  G  S  L  K  R  M  L  K  *  L  S  H  H  A  E  R  K  T  K  M  A  D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   S  R  G  I  L  G  P  S  T  L  H  M  L  G  A  *  S  G  C  *  S  N  *  A  T  T  R  R  G  R  Q  K  W  R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52392" stop="52278"/>
                    <exon start="51068" stop="50980"/>
                    <exon start="50906" stop="50842"/>
                    <exon start="50726" stop="50648"/>
                    <exon start="50400" stop="50275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="77064" PGL_stop="80086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77064" e_stop="77364"/>
            <exon e_start="79396" e_stop="80086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77064" e_stop="77364" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="79396" e_stop="80086" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77064" stop="77364"/>
              <exon start="79396" stop="80086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG : GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</gDNA_template>
            <first_frame> I  C  F  P  S  *  N  S  Q  L  S  P  *  V  N  Q  N  S  *  F  C  *  I  N  R  R  W  Q  V  G  I  E  L  R  M  I  T  I  I  C  S  S  W  C  *  L  E  I  L  V  *  E  N  P  I  S  F  L  D  S  Q  E  T  S  S  I  L  N  Q  S  L  L  L  V  L  N  L  L  P  V  A  L  R  *  M  I  R  S  L  R  L  R  F  G  I  L  L  D  K  K   : G  I  V  Q  L  Q  V  H  T  T  E  G  L  S  V  H  *  L  S  T  I  S  L  D  M  S  H  L  K  M  L  R  D  G  *  K  N  F  E  T  I  P  T  K  I  *  S  *  C  S  L  G  T  R  P  T  Y  V  T  C  V  L  F  Q  Q  R  M  P  R  P  L  L  K  E  R  V  P  S  I  W  R  L  Q  H  L  N  P  *  T  L  R  M  R  L  Q  K  Y  *  Q  R  Y  T  G  W  S  V  G  K  H  S  K  L  G  M  I  L  L  R  C  R  R  G  K  L  *  M  L  A  R  M  M  F  Q  L  *  K  K  L  V  A  A  L  C  K  L  K  K  S  R  N  R  *  S  *  T  F  K  W  L  L  L  *  L  H  *  V  F  S  V  L  N  I  L  G  I  I  P  P  L  Y  C  F  I  N  L  P  L  V  C  T  L  Y  P  I  L  L  V  F  *  L  F  V  K  E  F  Y  Y  Y  L  Y  T  F  T  L  Y  Y  Y  F  V  C  L  W  H  L  M  S  L  N  R  E   </first_frame>
            <second_frame>  F  V  F  L  L  R  T  L  S  Y  L  L  K  *  T  K  I  V  D  F  V  E  L  I  A  D  G  R  W  V  *  S  *  G  *  L  R  L  S  V  Q  V  G  V  N  W  R  F  W  C  R  K  I  Q  S  P  F  S  I  L  K  K  R  V  Q  S  *  I  K  V  Y  Y  W  C  *  I  C  Y  P  *  H  *  G  R  *  *  D  R  *  G  S  D  L  G  Y  C  W  T  R  K  :  V  S  C  N  Y  K  C  I  L  Q  R  G  C  R  C  I  S  C  L  R  Y  H  S  T  C  H  I  *  K  C  *  E  M  V  K  R  T  S  R  P  Y  R  P  K  Y  S  H  N  A  R  W  E  Q  G  R  L  T  S  L  A  C  C  F  N  R  G  C  Q  G  L  C  *  K  R  E  Y  L  L  Y  G  D  F  S  T  *  I  L  E  R  *  E  C  V  Y  R  S  T  D  R  D  I  Q  G  G  L  S  E  S  T  R  S  W  G  *  S  Y  C  V  A  E  G  A  N  Y  K  C  W  Q  G  *  C  F  S  C  E  K  S  W  L  L  L  C  V  S  *  K  N  Q  E  I  G  E  V  K  L  S  N  G  F  S  Y  S  C  I  E  Y  S  Q  F  *  I  S  *  E  L  F  H  L  C  I  V  S  L  T  Y  L  *  F  V  L  C  T  L  F  C  *  S  F  D  S  L  *  K  S  F  T  I  I  Y  I  L  L  H  Y  I  I  I  L  Y  V  Y  G  I  L  *  V  *  I  E  K  </second_frame>
            <third_frame>   L  F  S  F  L  E  L  S  A  I  S  L  S  K  P  K  *  L  I  L  L  N  *  S  Q  M  A  G  G  Y  R  A  E  D  D  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  S  R  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  R  S  I  K  V  D  D  K  I  V  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  V  V  Y  D  I  T  R  H  V  T  F  E  N  V  E  R  W  L  K  E  L  R  D  H  T  D  Q  N  I  V  I  M  L  V  G  N  K  A  D  L  R  H  L  R  A  V  S  T  E  D  A  K  A  F  A  E  R  E  S  T  F  Y  M  E  T  S  A  L  E  S  L  N  V  E  N  A  F  T  E  V  L  T  E  I  Y  R  V  V  C  R  K  A  L  E  V  G  D  D  P  T  A  L  P  K  G  Q  T  I  N  V  G  K  D  D  V  S  A  V  K  K  V  G  C  C  S  V  *  A  K  K  I  K  K  S  V  K  L  N  F  Q  M  A  S  P  I  V  A  L  S  I  L  S  F  E  Y  L  R  N  Y  S  T  S  V  L  F  H  *  L  T  F  S  L  Y  F  V  P  Y  F  A  S  L  L  T  L  C  K  R  V  L  L  L  F  I  Y  F  Y  I  I  L  L  F  C  M  F  M  A  S  Y  E  F  K  *  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77135" stop="77364"/>
                    <exon start="79396" stop="79825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQMAGGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIKVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERESTFYMETSALESLNVENAFTEVLTEIYRVVCRKALEVGDDPTALPKGQTINVGKDDVSAVKKVGCCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="83276" PGL_stop="81098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83276" e_stop="83221"/>
            <exon e_start="83091" e_stop="82993"/>
            <exon e_start="82815" e_stop="82648"/>
            <exon e_start="81323" e_stop="81098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83276" e_stop="83221" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83220" i_stop="83092" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83091" e_stop="82993" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82992" i_stop="82816" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82815" e_stop="82648" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82647" i_stop="81324" i_length="1324"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="81323" e_stop="81098" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83276" stop="83221"/>
              <exon start="83091" stop="82993"/>
              <exon start="82815" stop="82648"/>
              <exon start="81323" stop="81098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC : GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG : GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG : ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</gDNA_template>
            <first_frame> L  K  E  I  L  D  I  R  T  F  L  T  *  E  F  C  Q  K  T :   E  W  Q  C  W  M  F  R  A  T  M  K  L  T  I  P  L  I  S  T  E  I  C  V  *  T  *  I  T  C  P  T  R :   S  F  L  H  W  G  S  R  L  A  M  *  Q  L  D  C  Q  M  K  *  S  L  T  A  *  K  Q  D  H  F  R  P  P  L  F  L  A  P  W  K  L  L  H  V  W  I  T  K  L  I  S  V  S  Y  A  R :   L  T  T  T  S  K  K  L  *  E  L  L  I  A  G  T  N  I  M  Q  N  A  *  R  S  G  W  L  *  R  T  L  A  L  S  A  N  P  P  D  C  Q  *  K  E  K  I  C  E  N  R  E  L  V  G  W  W  M  N  N  Y  K  S  G  T  F  C  S  L  V  K  Y  L  F  S </first_frame>
            <second_frame>  *  K  K  Y  *  T  S  E  P  S  *  H  E  S  S  A  R  R   : R  S  G  N  A  G  C  F  G  L  P  *  S  *  Q  S  H  *  S  A  Q  R  Y  A  F  R  R  R  S  H  V  L  R   : G  A  S  C  T  G  G  A  D  W  Q  C  N  N  W  I  V  R  *  N  N  R  *  P  L  E  N  K  I  I  F  A  P  R  Y  S  L  H  P  G  N  C  C  M  F  G  S  R  S  *  F  L  C  H  M  P   : D  *  L  Q  Q  A  R  N  Y  R  N  S  *  L  R  A  R  I  S  C  R  M  R  K  E  V  V  G  C  E  E  H  L  P  Y  L  Q  I  H  R  I  V  N  R  K  K  R  F  V  K  T  G  S  W  L  V  G  G  *  I  I  I  R  V  G  H  F  V  L  L  L  N  I  C  S   </second_frame>
            <third_frame>   E  R  N  T  R  H  Q  N  L  P  N  M  R  V  L  P  E  D  :  G  V  A  M  L  D  V  S  G  Y  H  E  V  N  N  P  I  D  Q  H  R  D  M  R  L  D  V  D  H  M  S  Y  E  :  E  L  L  A  L  G  E  Q  I  G  N  V  T  T  G  L  S  D  E  I  I  V  N  R  L  K  T  R  S  F  S  P  P  V  I  P  C  T  L  E  T  A  A  C  L  D  H  E  A  D  F  C  V  I  C  Q  :  T  D  Y  N  K  Q  E  T  I  G  T  L  D  C  G  H  E  Y  H  A  E  C  V  K  K  W  L  V  V  K  N  T  C  P  I  C  K  S  T  G  L  S  I  E  R  K  D  L  *  K  Q  G  V  G  W  L  V  D  E  *  L  *  E  W  D  I  L  F  S  C  *  I  F  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83274" stop="83221"/>
                    <exon start="83091" stop="82993"/>
                    <exon start="82815" stop="82648"/>
                    <exon start="81323" stop="81177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERNTRHQNLPNMRVLPEDGVAMLDVSGYHEVNNPIDQHRDMRLDVDHMSYEELLALGEQIGNVTTGLSDEIIVNRLKTRSFSPPVIPCTLETAACLDHEADFCVICQTDYNKQETIGTLDCGHEYHAECVKKWLVVKNTCPICKSTGLSIERKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="86808" PGL_stop="84310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86808" e_stop="86652"/>
            <exon e_start="86395" e_stop="86313"/>
            <exon e_start="84854" e_stop="84310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86808" e_stop="86652" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86395" e_stop="86313" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.788">
            <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="84854" e_stop="84310" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86808" stop="86652"/>
              <exon start="86395" stop="86313"/>
              <exon start="84854" stop="84310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG : GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG : GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</gDNA_template>
            <first_frame> L  Q  E  K  *  R  G  Q  L  I  G  E  S  N  S  Q  L  A  V  N  R  K  I  S  T  F  P  L  K  P  L  F  N  Y  R  F  A  L  F  A  S  L  I  H  R  S  S  D  Q  P  L  I   : G  V  F  K  L  S  I  F  V  P  F  M  F  K  G  N  N  Q  G  R  S  *  Y  L  D  D  K  K  :  E  S  P  H  N  I  V  T  T  K  I  G  *  R  S  M  S  H  S  N  R  I  I  D  M  E  A  D  Q  Q  G  Q  E  F  F  H  S  A  P  C  M  F  Y  G  S  I  A  A  L  P  Q  P  T  V  H  A  V  V  P  A  P  V  N  A  G  N  I  Y  L  H  H  V  S  D  H  Q  E  G  P  L  T  Y  G  L  T  Q  F  N  G  I  Q  H  Q  H  P  A  S  N  P  D  L  A  I  S  A  S  N  H  Y  N  P  Y  M  A  V  P  S  A  S  G  D  F  P  I  P  V  N  H  G  P  L  D  R  L  H  T  S  S  H  N  I  F  G  M  N  S  D  Y  G  R  N  N  H  Y  M  D  D  V  R  G  S  Y  K  R  K  N  A  E  G  I  P  A  N  L  Q  Y  H  H  A  L  A   </first_frame>
            <second_frame>  Y  K  K  N  N  V  A  N  *  *  E  N  Q  T  A  N  *  Q  L  T  V  K  F  P  L  F  H  *  N  L  S  S  I  I  A  L  P  F  L  L  L  *  S  I  D  R  L  I  N  L  *  L  :  V  F  L  N  *  A  F  L  C  L  L  C  L  K  A  T  I  K  E  E  V  D  I  W  M  I  K  R :   N  H  P  T  T  L  *  P  R  R  *  A  K  G  A  C  H  T  V  I  A  *  L  I  W  K  Q  I  S  K  V  K  S  F  F  I  Q  H  L  A  C  F  T  G  A  *  R  L  Y  H  S  L  L  S  M  Q  *  Y  Q  L  P  *  M  L  V  I  Y  I  C  T  M  Y  Q  I  I  K  R  V  P  *  R  M  A  *  H  S  S  M  G  F  N  I  S  I  L  P  A  I  L  T  *  L  F  L  L  Q  I  I  T  I  L  T  W  L  F  H  P  L  L  E  I  S  L  F  Q  *  I  T  G  H  L  I  G  F  I  Q  V  L  T  T  S  L  E  *  I  Q  I  T  E  G  T  I  I  I  W  T  M  S  E  A  H  I  R  E  R  M  L  K  E  F  L  Q  I  F  N  I  I  M  L  W  Q  </second_frame>
            <third_frame>   T  R  K  I  T  W  P  I  N  R  R  I  K  Q  P  I  S  S  *  P  *  N  F  H  F  S  I  E  T  S  L  Q  L  S  L  C  P  F  C  F  F  D  P  S  I  V  *  S  T  F  N  W :   C  F  *  T  E  H  F  C  A  F  Y  V  *  R  Q  Q  S  R  K  K  L  I  F  G  *  *  K   : G  I  T  P  Q  H  C  N  H  E  D  R  L  K  E  H  V  T  Q  *  S  H  N  *  Y  G  S  R  S  A  R  S  R  V  F  S  F  S  T  L  H  V  L  R  E  H  S  G  F  T  T  A  Y  C  P  C  S  S  T  S  S  R  K  C  W  *  Y  I  F  A  P  C  I  R  S  S  R  G  S  L  N  V  W  L  D  T  V  Q  W  D  S  T  S  A  S  C  Q  Q  S  *  P  S  Y  F  C  F  K  S  L  Q  S  L  H  G  C  S  I  R  F  W  R  F  P  Y  S  S  K  S  R  A  T  *  S  A  S  Y  K  F  S  Q  H  L  W  N  E  F  R  L  R  K  E  Q  S  L  Y  G  R  C  Q  R  L  I  *  E  K  E  C  *  R  N  S  C  K  S  S  I  S  S  C  F  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84815" stop="84312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMSHSNRIIDMEADQQGQEFFHSAPCMFYGSIAALPQPTVHAVVPAPVNAGNIYLHHVSDHQEGPLTYGLTQFNGIQHQHPASNPDLAISASNHYNPYMAVPSASGDFPIPVNHGPLDRLHTSSHNIFGMNSDYGRNNHYMDDVRGSYKRKNAEGIPANLQYHHALA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86793" stop="86652"/>
                    <exon start="86395" stop="86331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQLIGESNSQLAVNRKISTFPLKPLFNYRFALFASLIHRSSDQPLIGVFKLSIFVPFMFKGNNQGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86214" e_stop="85451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="86214" e_stop="85451" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86214" stop="85451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCT</gDNA_template>
            <first_frame> G  R  L  C  S  F  M  C  L  A  W  V  Y  A  C  L  V  W  F  S  F  S  G  V  W  E  I  I  N  S  I  G  M  F  *  F  I  C  V  Y  A  S  C  Y  *  V  G  L  R  E  V  I  R  *  D  M  T  Q  F  Q  L  T  E  D  M  I  G  E  C  G  G  H  G  L  *  Q  K  V  G  R  *  Q  C  A  V  L  L  S  V  H  I  S  S  C  S  I  A  P  V  V  S  C  S  S  T  S  L  L  F  V  D  F  L  Y  L  N  Y  C  F  V  L  L  *  F  L  F  C  F  D  M  L  F  L  V  L  P  L  L  L  S  L  D  C  I  G  L  F  P  L  R  R  G  S  I  R  K  N  L  S  I  S  *  V  G  *  G  L  S  T  L  Y  P  L  Q  F  V  Y  *  S  L  L  L  L  S  C  N  F  *  V  V  F  F  H  E  H  Q  T  F  E  *  K  L  C  N  L  S  C  L  L  G  *  P  N  M  T  *  V  N  L  E  V  L  M  R  V  G  V  V  L  K  K  H  T  T  K  I  K  I  L  F  G  V  F  P  T  *  K  F  A  S  G  F  V  N   </first_frame>
            <second_frame>  E  D  Y  V  L  L  C  V  L  L  G  C  M  P  V  *  F  G  F  P  F  L  V  F  G  K  *  S  T  Q  L  E  C  F  D  L  Y  V  C  M  H  P  V  T  K  L  A  *  E  R  *  L  D  R  T  *  R  S  F  S  L  P  R  T  *  *  E  S  V  E  D  M  D  Y  D  R  R  L  V  G  S  S  A  L  S  C  C  P  Y  I  L  V  V  V  V  L  L  L  *  F  L  V  L  P  L  L  Y  C  L  L  I  S  C  I  S  I  I  V  L  F  C  C  S  F  C  S  V  S  I  C  C  F  L  Y  F  R  Y  F  F  R  W  T  A  L  D  C  F  H  *  D  E  D  L  S  G  R  T  F  L  S  L  R  L  G  K  V  *  V  L  S  T  L  S  S  L  F  I  N  R  C  C  C  C  R  V  I  S  R  *  C  F  F  M  S  I  K  H  L  N  E  N  C  V  I  C  L  A  S  S  G  N  Q  T  *  H  K  L  I  S  K  S  *  *  G  L  V  L  F  *  K  N  T  Q  L  K  S  R  F  Y  L  V  C  S  Q  L  E  N  L  H  P  G  L  S  I  </second_frame>
            <third_frame>   K  I  M  F  F  Y  V  S  C  L  G  V  C  L  S  S  L  V  F  L  F  W  C  L  G  N  N  Q  L  N  W  N  V  L  I  Y  M  C  V  C  I  L  L  L  S  W  L  E  R  G  D  *  I  G  H  D  A  V  S  A  Y  R  G  H  D  R  R  V  W  R  T  W  I  M  T  E  G  W  *  V  A  V  R  C  L  V  V  R  T  Y  *  *  L  *  Y  C  S  C  S  F  L  F  F  H  F  F  T  V  C  *  F  L  V  S  Q  L  L  F  C  F  V  V  V  F  V  L  F  R  Y  V  V  S  C  T  S  V  T  S  F  V  G  L  H  W  T  V  S  I  E  T  R  I  Y  Q  E  E  P  F  Y  L  L  G  W  V  R  F  E  Y  S  L  P  S  P  V  C  L  L  I  V  V  V  V  V  V  *  F  L  G  S  V  F  S  *  A  S  N  I  *  M  K  T  V  *  F  V  L  P  P  R  V  T  K  H  D  I  S  *  S  R  S  L  N  E  G  W  C  C  F  K  K  T  H  N  *  N  Q  D  F  I  W  C  V  P  N  L  K  I  C  I  R  V  C  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85882" stop="85658"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVSQLLFCFVVVFVLFRYVVSCTSVTSFVGLHWTVSIETRIYQEEPFYLLGWVRFEYSLPSPVCLLIVVVVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 32752 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2047 bytes was the average size of a spliced alignment
$ 19752 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1646 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:47:59
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