<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 13:43:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697159" ref_strand="+" ref_description="SGN-E697159 [FA01AA06]">
      <seq>ctcttctctcttccctaaaccctcattacatcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6074" stop="7151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6374" g_stop="6851" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E697159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6374" e_stop="6851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGG</genome_strand>
        <mrna_strand>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358399" ref_strand="+" ref_description="SGN-E358399 [cLHT-35-K18]">
      <seq>ctaaaccctcactacatcttgcaaacagaactactatcagtccacctttcaccattgtaagaactccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaatccgaataacccaagtccaattcaacccgtttcctacacccctaagaacctgccggagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggatgccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6088" stop="7148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6388" g_stop="6848" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E358399" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6388" e_stop="6848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAG</genome_strand>
        <mrna_strand>CTAAACCCTCACTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAACTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATCCGAATAACCCAAGTCCAATTCAACCCGTTTCCTACACCCCTAAGAACCTGCCGGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATGCCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305364" ref_strand="+" ref_description="SGN-E305364 [cLEX-15-P12]">
      <seq>atcttgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgatctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccacatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6103" stop="7060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6403" g_stop="6760" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E305364" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6403" e_stop="6760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTA</genome_strand>
        <mrna_strand>ATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGATCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCACATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316599" ref_strand="+" ref_description="SGN-E316599 [cTOA-25-H24]">
      <seq>tgcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6107" stop="7153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6407" g_stop="6853" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E316599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6407" e_stop="6853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAG</genome_strand>
        <mrna_strand>TGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310360" ref_strand="+" ref_description="SGN-E310360 [cTOA-1-I14]">
      <seq>gcaaacagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6108" stop="7146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6408" g_stop="6846" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E310360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6408" e_stop="6846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAG</genome_strand>
        <mrna_strand>GCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300025" ref_strand="+" ref_description="SGN-E300025 [cLEW-11-F22]">
      <seq>acagaactactatcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgctgaagaggaaatgatttcgtttccaacattgattaatgtgaagagtgatgaaaagaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6112" stop="7264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6412" g_stop="6964" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E300025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6412" e_stop="6964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</genome_strand>
        <mrna_strand>ACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315963" ref_strand="+" ref_description="SGN-E315963 [cTOA-26-H16]">
      <seq>atcagtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaagagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcgggcatgaggagagttatgaatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6123" stop="7204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6423" g_stop="6904" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E315963" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6423" e_stop="6904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGA</genome_strand>
        <mrna_strand>ATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAAGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGGCATGAGGAGAGTTATGAATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266168" ref_strand="+" ref_description="SGN-E266168 [cLEI-3-A11]">
      <seq>agtccacctttcaccattgtaagagctccaatggcagccttcaaactactctaccaagctcgtcgtcactgttcatacagaagcccatctcacttttctcctactttccgttctcatttgcacagatttctctcttcctcatcatcatcagaaaacccgaattcgaataacccaagttcaattcaacccgtttcctacacccctaagaacccgccagagagtagtagccgacccgaatcaaataacccagatggggttaaagcggatggtgggttgtggacccgggaggatctgcggtacttgaaggataccccgaaaatagctccgatttcttatccgacaagggtagcgccgttaccggaggatttgccggaagaggagaaagggaaaatggaaggtatgggtgatgagatggagagagagaggagaagaatcgaggcgcaaaaacgggcggcaatgaggagagttatgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6126" stop="7201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6426" g_stop="6901" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E266168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6426" e_stop="6901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGC</genome_strand>
        <mrna_strand>AGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256958" ref_strand="+" ref_description="SGN-E256958 [cLEG-44-H17]">
      <seq>aaaaaagctgtttatgatcttaaagaggccattcggcttgtaaaggctaatgccaagaagaaatttgatgaaactctggaagctcatgttgttttgactcctgatatgcgtcgaagtgatctgaaacttgaaggtacagtggctgttcctcatgggtttggaaaggtatatcggattgctgtttttgctgaaggagctgctgctgatgaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaancgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6660" stop="14771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6960" g_stop="7004" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7005" i_stop="9110" i_length="2106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9111" g_stop="9188" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9189" i_stop="9865" i_length="677">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9866" g_stop="9907" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="165" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9908" i_stop="9993" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9994" g_stop="10099" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="336" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="375" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14381" g_stop="14471" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="466" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E256958" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6960" e_stop="7004"/>
          <exon e_start="9111" e_stop="9188"/>
          <exon e_start="9866" e_stop="9907"/>
          <exon e_start="9994" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAGGTCAGATTTTTTTGTTTCAATCAACTGTGTATTGTTTTGTTGGAGTTTCTGTTCTGTTATTAGCTGCTGCTTTTTGTACTTCTGGTAATTATATCGCTAGACTGCTTTGGACTGTTTTTCTTGAGCTGAGTGTCTGTATGAAACAACCTCTCTGAGGTAAGAGTTACTTATGTGAGGTAGGAGTAGTAAGGTTATATGAATTCTTTTTAGCATTTGTTGTTTCTTATACAAAATTTTGACTCCTTGTAAAGTTAAAAGGCAGTAGTAATTGGATAATATATTGAAAAAAAGAAGAAAAAAACAATAACAGGATGCCTATTATTAGTTTAAATGAAAAAGAAGAGGAGAAAACAATTAAAGGATTCCCATTAAAGGGGCCATTTGGCTTGTAAAGGTTACATTTTTTGTTTCAATCAACTGTGTGTAGAGATCCCAAATTAGTTGAGGTTGTTTATATGAATTCTTTTTTAGCATTTGCTGTTTCTTGTACGAAATTTTGACTCGTTATAAAGTTGTAAATAATAGTAATAATATAAGAAAACAATCACAGGATGTGTTTCTGCTGGATTTCTAAATGTAGTAAAGAATATCTGGAATATTATTATTTCATCGTCATACTTGCATGTCTGATAATTTTGTTTCAAGTGGACAGTGAAATTTCAAGGTAGCCCTAAAATAGGGAGTTGAGGAAAGAATAAAAGTAAGAACTGAAGAAAAACACTTCTAGCAGTTTACTTAGGTTTCATATGGATAACCTTCTCGTAAGTTACATTGTATCCTTCAAGGTCAAAAAAAGATCATACTTGAATAACCTTGTTGTGATACTCACTATTTGCTTACATTACTAATTTGGAGTCGATATGGTATCCTAGTGAACATCGATGATTGGGTGCCCGCCATAGTTTATCATGTTTTGATGTAAAAATCTGTCTTTTGGTCTAGAGTCTGTAAATGTGGTTTTCTTCAGCATATTGATGAAAAATTAACTTCATAGAATGCATTATTGCATTGTTAATTATTTGGAGCACCTTGTTGGTATGTCCTACATCCTCAATTGGATATCAATGATTTACTATAGGAATGGTCCAATATATTCTCTAGGTTGAAGACTATTTTTTAATAATGAGAATACTTGTATAACCTCCTTCCATAAGGAGCTGCTGTCACATGCTAAAGTAAAGTGCATCTAAGGATATTTTGGATAGCTTCCATATATCTCTAGATAAGTTAATGGTCAAGGTATTTCTAGACACTCTTTTTTGATAATAATGATGGCGGAGCCTGTTTGCCTGCGCCTCAACTGTTCCACCATGTAGCTGCATCCTTTCACTAATACAAGTACCATATAACTCCATTATTCATTAAGGTATTTCATCAACATTTCAGCAGATAGAAAGGAATCATCTTGTTTTTTGACAATGCTACATTCAGACAGTTGTCTTCCATTAATTACTAGGCCACCCTCTAGCGTCGTATTTCTAGATAATTTTTTGTTTTTTTTTGGCTTTGCTTTCTTTAGGATAGTTATGGTGTCAGAACCTGCTAATCCGTCGTTACCTATTACTTTTCATTAGTATTGGGTAACTCTATCCACCAACACTTAGGCTAGTGTAAAAATCCACGTGATGTTGTCTCTTGGTTCCCAAGGTTGTCACTTCATCTCTTCAACTGTTAGGCTTTTTCCTTGAGAAGTCGCAAGTGTTTATAGATAATATCATAGTGAAAGAGACAAGTTCAACTTTTCCATCAATTAGGGGTAGTCATATGCATGGCTCAAAAATTCAACTCTTATTTTTCCTCAGAATCTCATTATATTTTTTTATTCATCTATTCAAGTTGAAAATAGTGATTATGGATCAAAGTCCATATTATGTAATCTGAGTGACGCTTAAGCATAGCTTGCCTGAGATAGTTTGCTTGTCTGCTTTTTGCATGGTGCTTTGTCATTCTATCTATAGTATATAATTAAGTGACTCTTAGCTGTAGCTCGCCATTAATTGGTTTTCTTGTGTGCTTCTCATGGGGCTTTGTCTTTCTTTCTACTCGTGTTTTCTTCAGAGGTTACAGACTGAGCCATGATTCATTGTATTTTTAGTGATTATGCAGGCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTGGTGCGTGCTTTCGTCCTCTTTCTGGCCCACATTAAGTTTACTATCTGAGCTTGTCGTCACTCGTCACGTGATACTTGAACAGAAAGACTTCTTGTTACCACTTCTGTTGTTATTGGTTTATATGTCTAAGTTTATTCATCAGATGGTGAATGGATATCAAATAATTGTGCTTAGAAATAGCTCATAAATCACGAGAGCATCGAGGGGCTTAAACCTTTCAAACCTAAATCTCAATTCTTGAACATTTGGAAGCACTCAGAATTTGCTCTGCATGTAGTCTTGTAGATTTTGCAATTGACAGAAAATTCATTTATATTTAAAACAAATCTCCAACATTCTAGATATACTTATCATGGTTTGGTTAGGGGTTTGCTGATTCCACATCCTTTTGTTGTTCGTGAGTGTATGGAGCAGATTTTATGGTAGAATCATGCTCCTAATGCCACCTAATTAAGAGTGAATTTTCCTTTCCTTTGCTGGAATATTGTTCGTGCAAGCCTCTAGAAATATAAATTCTCTTGTACAGGTGGTATAAGCAGAGTGAGATTACAAACATGTTTCATTACCAATTCTTCCGTTTTGATTGACCTCTTCTAGTGTAGCTAATTTGACCCTAGTATAAAGCAATCTCATTCGTTTGCTAGTGCTAGCTCATAGTTCTTTCTTTTGTACTGCAGAAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAGGTATTAGTGCATTCTTCATAAAGTTTAAGGTTAGATAATCATATGCTGTTGTAGATATACTGTTTGACTAAATATTTTCCTTTCAGGTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATG</genome_strand>
        <mrna_strand>AAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG......................................................................................GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAANCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263299" ref_strand="+" ref_description="SGN-E263299 [cLEG-62-A8]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9736" stop="16805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10036" g_stop="10099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16180" g_stop="16505" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="734" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E263299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10036" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
          <exon e_start="16180" e_stop="16505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261020" ref_strand="+" ref_description="SGN-E261020 [cLEG-55-K16]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaattcactactgttgcttcacatttttattgttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9736" stop="16800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10036" g_stop="10099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16180" g_stop="16500" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="728" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E261020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10036" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
          <exon e_start="16180" e_stop="16500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGT</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTC-AAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368853" ref_strand="+" ref_description="SGN-E368853 [TUS-26-C15]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccattatttcctgttacaattacagtcgttatcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9736" stop="16522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10036" g_stop="10099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16180" g_stop="16222" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="452" r_length="44" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E368853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10036" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
          <exon e_start="16180" e_stop="16222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAA-TACAGTCGTTATCGATTG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATTATTTCCTGTTACAATTACAGTCGTTATCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256664" ref_strand="+" ref_description="SGN-E256664 [cLEG-40-M9]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaacaggggaaatgtgaagattgattgtgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtatgaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9736" stop="15297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10036" g_stop="10099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="408" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E256664" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10036" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAACAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTGTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTATGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259000" ref_strand="+" ref_description="SGN-E259000 [cLEG-41-A1]">
      <seq>gaagcccgagaagcaggggctgatgttgttggtggtttggagctcatagagaacatcaagagtggaaatgtgaagattgattttgacaaatgtttttccactcatgcaatgatgccgaacttgagacagattgcgaagtacttgaggcagttgatgccagatactaagaaaggtactgttaccaaagatataacaaaagcagtgaaagaagctaagcgaggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9736" stop="15278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10036" g_stop="10099" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12707" g_stop="12771" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="129" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14265" g_stop="14303" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="168" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14381" g_stop="14485" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="361" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14951" g_stop="14978" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="389" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E259000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10036" e_stop="10099"/>
          <exon e_start="12707" e_stop="12771"/>
          <exon e_start="14265" e_stop="14303"/>
          <exon e_start="14381" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTGGTATGCCACTAAATTCCTTATTTAAGTTTGCAATTATTTAGAACTGTCATGGTTCTTCTTATGTCCACTTACATTCTGTTGTAAATGGTGCAAGTTATGAGGTCAGTTTACTCCTTCCAGTCTGTAAACTCTCTATGGTTTACATTCATAATCACTTTGGAGGCCTACATTCATAGCCTCCTTCAACATATGGAGTGAAGTGAAACTGACAAATTTTTTTCCAAGCTGACTTTTCTTATTGAGAAGCCAATTTTCCTTTTAACTTAATTCTTAGGCTAGATGTTTGATTAGTCTTTTTAGCTGGATCAACCACTCCTCTGGAATTACTGTTGAATATATCCTAGAATTTATCAGCTGCATAGATCTATGTTGATAGTTGTGATAGCTTTTTTTTGCCTTCCTAGGAGCTGATAATCTCTTTCTAATGCTTGCATCTTCTTGATGCTTTTTGTTAATTATCATTCTTATTTCATCAAAAACTTAATTCTTAGAATTAGAAAAAGTTTACTTTATATTTTGGAGGTGGATGCGCATGTAGGATACTGAGAAGAATGGACCAAACCGTGGATATTAGAAGACCCAGGTTCAAAGGCACACTAAAGTTGAAAATCTGATCTTTTTTGATGTTAAATTCAAAAGTAATGGCGATAGATCTAATGGGAAGGGGAGTCTTAAATCTGTTGAATGAGGTTCAAATTAATATCATGGAATGTTAGGGGGTTAAATGAATTGTGAGCCAAAAAAAAGACCTTATACTTTACTTTCACCCCAGAGGTATACTTTCGCCCCAGAAGTATAACGTGCACTCGTGCAGTATACTTCCTATTATTATGGGCTTTTCCTAGAATGGTGGTGGAAACACTGGTGAGTTGGTGAGCTAGTGAGAGGAATCCAGAATGAGAGGAATATGTATGAAAGTCCTCGTAGTATGCTCTGGATGATTTTAGGGAAAGGTATAGTAAACATCTCGATTAATTGTGAATGCTTTGTTGAGAGTTGAATGCTCTTTGTTTCACATATATATTTTTAGAGTAAAAGAATATCCCTCTTTGAAGATAGCAGGTATATTTACTTACAAAATAAGGGAAGATATTCGGTTAGACTTCTGGGAGGCTGGATGAATAGTCTAATACATTGTGTACTTCTTGTAAAACTTGCACTGTCTTGGCATGATAGCATTGGAAGAATTTTGACCTAGTTTTTTTCAAAATCAGGGGCCAAAGATGGGGACTAGCTTTAGGCAATTGTTGGAGGGAAAAACTTACTCCCTCTGCTCGCTTTTACTTGCCGACTTTGGTTTTTGTATTTCCCTAAGAAACAATGATTAATATGAGTATTTTACCACCATACTCATATTAATTGATGTATAGTCTTCGGTATTGAGAAATAAGTAATTAGTATTGTCAGTAAAAGATAAAAATAACTGTCTTGATATGTTAAAAGTAACAAGTAAAAGTGAATCTATTTTTGAAATTTTGGAAAGGAAAAGTGAACAGCGGGAGTATTCAACTATAGCGAGTTCTTCACCAAAGTCACTTATGTTTATTTTGTATGAAAAAAGTCTTTCTAATTTTGCTAGTTTATTGACCAAGGCATTATAGCTAAAACACTACTCCCTCGGTTCATTTTATATGTCCAGTATTTCAAAAATAGATTTTAAGTTGTCATTTTTAACATATCAAGAGAAGTATTATTTTTTCCTGTTGTACCTCCACATAATTACTTATTCTCCAAATCATTGTCCAAGATCTTAGACTATACATCAATTAATATGAGTATTATGGTAAAATACTCATATTAATTATTGTTTCTTAAGGGGCGTGCAAAGTCCAAAGTGGACAAGTAAAAGTGAATGTAGGGAGTAGAAGGATAATTACATAAACCTCCCCTCAAGTTTGATTTTATAACACTTACTTCCTTTATGGTTATGCTTGCTCTTATTATATTTTTAACCTAATTATTATTATAAGAAAATTATAATAATTAGGTTTAAAAAATAAATAAAAGGGCCAAACAAAACCACAAAGCCAAACTTGAGGGACATTCATGTAATTTTCCCTTTAGTTCTGTTGGCTATTATAACTTTGTAGATAAACTAGCATAACTTGAGTGACTTTGTTGATACAAAGTAAACATAAGTGGCTCGAACAATAAGTTTAAAAAAATTAAACATGATGGGCAAGCATAACCACAAAGGAAGTAAGTGTTACAAAGTGAAACTTGAGGGGATGTTTATGTAATTATCCTTTAGTGTTTTGGCTATAATGACTTTGTAGATAAATTAGCATAACTTGAGTGACTTTTTTGATACAAAATAAATACAAGTGACTCAAGTGAATAACTTGTTATAGTTGAATGACCACTTAAGTTATTCCCTTGCAAATGCTGATTAAGTCTGGTTTTAGAGGACTTCATTCCAAAACAAAAAGATCAGCAATTTCATCCACACATTTGGGGACGATGATGAGACCATTCTTTTCTTTTGAACTTGTATATTCTAACCCTTCAGGAAGATATGTTGTTTCAATGTTATTCCTTTGAGCTTGATTTTTTCTAATGCCATTGATTATCATGTCCTAAACATTTTTAATGTAATTATACATGCAGGAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAGGTTTCTTAAATTGGCTATCCATACTTCTCATTGACATCTCTTTCGCGAGTACACTGTAAATTTGGGGGTCATTTGATTTGCTACTAGCGTTAAGGTGGATTACAAAGATTTTTTTTGTTTGGTTCCCACCTGGTGTCTAGTACCTGCATTGGAGCCCCACTAGTCCTTTAAGATTTAAAACTTCCAAATTATATATGATCTTGAAGAGATTAACTATGATCTTGAAGAGATTAACATGGAAAAGAGTGCAATATAGCGCCCTTTAAGTGGTTTAGTGCTGGCATTTGGCTCACAAAGTTATGTACATTTCTACCTTTCAATTCTAAAAAGAATATCAATATATCTATTCTATTGAAATTTAAAAAAATAGTAGTAGTGACTATGTGAGTTCTTATACTTTTCAGGGCAAAAAGAGATGGGTTTAATTAATAAAAAAGAGGGTAAGAAATAAATAAGAAGTTTCATGCGAACGTAGTAGTCAGTTTCAAGTGAAATTTAAATAAAATTTCTTACTTCATTAAATAAAGAAGTAGTCATTTTCATGGAAGCAGATATATATTTTTAAAGAGAACGAAAAACTGATGATATAGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATACCTGTATAGGTTGATGCTAATATGAGCCCTATAGGATGACTGGTAAAACTTGTACTTTTTAAGGCGGGGAGGAAACATAAGTGTGCTTTAGTGCTTCTCAGTCACTAACATCACATGATTTTGCAGATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAGGTAAGTAATCCATCGTTCGGCTCTTAATTAACGCTATTCTTTAGGAATTAGTGCTTATTTCCTCATAATGCATGCAGAAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATAC</genome_strand>
        <mrna_strand>GAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG.............................................................................AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254547" ref_strand="+" ref_description="SGN-E254547 [cLEG-29-B3]">
      <seq>ggctgatataaataaacgggttcctctttttaaaaattctctcaggcacagtgccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13061" stop="14080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13360" g_stop="13780" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E254547" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13360" e_stop="13780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATA</genome_strand>
        <mrna_strand>GGCTGATAT-AAATAA-ACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTGCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262858" ref_strand="+" ref_description="SGN-E262858 [cLEG-59-C14]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaatattggctgggaagggattanagaagaaagggattggagggttgaattanttaagcattgtaaacagtgggctattgaagtcctttaatttcattttaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13062" stop="14439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13362" g_stop="14139" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E262858" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13362" e_stop="14139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGA-TGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAATATTGGCTGGGAAGGGATTANAGAAGAAAGGGATTGGAGGGTTGAATTANTTAAGCATTGTAAACAGTGGGCTATTGAAGTCCTTTAATTTC-ATTTTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262960" ref_strand="+" ref_description="SGN-E262960 [cLEG-59-C13]">
      <seq>ctgatatcaaataagacgggttcctctttttaaaaattctctcaggcacagtcccttgatttttctctctcctacttaagaggggagaatatcctttccggcttgctgccggacacatcatttctttgctatgcttttgcttcctttttgcaagctaacacctttgtggaagcagaacaaagcgacggaagaaagtgaaaattagaggaaaaacagagacttttttctccttgtaaaaaaaacgagtgactagtttttctcttcaatagtttttaaacagacatatgaatagaagttgatgaattggagattctatgtttgaaactacaaaaactagtcatatggaaagatttctgaaataaaagtaaaagaacacttggggacaccaatttatatgctacgattgttatgtggacatacaagggtaattaggatgtctggttgtatctggtcttcccatattttgtatttagtcaagaaatatggttttgtatttggtcaagaaatacggggaaaggattgacagctgttattaatgtttacatcaagaatagttttttcctagtgattgcattctctttatcctaggataattttagttatgaagtgttattgaagaagctgtgtggaagtattatgtaaaaatattatacatgaattgatctttttagttaaaattggctgggaaaggattanaaaagaagggaatggaaggggttgaattagttaagcattgtaacaggtgggctattgaagtcctttaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="13062" stop="14428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13362" g_stop="14128" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="768" r_length="768" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E262960" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13362" e_stop="14128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGG-A-GGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTC</genome_strand>
        <mrna_strand>CTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAAT-ATTATACATGAATTGATCTTTTTAGTTAAAATTGGCTGGGAAAGGATTANAAAAGAAGGGAATGGAAGGGGTTGAATTAGTTAAGCATTGTAACAGGTGGGCTATTGAAGTCCTTTAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368852" ref_strand="+" ref_description="SGN-E368852 [TUS-26-C15](-)">
      <seq>caaaaacagtaaaaaaaaagctaaacgagggtgtaccgttcaaaaaagataaaactgcaattgtgcatgtaggaattgggaaggtaagttttcaagaagaggcattgtgtgaaaacattggtgcatttgtacatgaacttttgcgtcagaagcctgctggtctaaaaaagagctcaaaatatgctggttatgtgaatacagtccatctctgcagtacgatgggtccatcatttcctgttacaatacagtcgttatcgattgcagcagaccgccatgcaaggaagtatgttcaatgatagtatttgaatagaagatccaattttaacttgataccctctcttaatagatccaattttaacttggtactatgttgtactcatttgtttaaatttcttgattttcccacattagaaaaaaggtgtttcctagttatttttgtttcttcccctttactgtaatgatctatgcccagccctctgcttgaaacccctttttaactcaaaattcactactgttgcttcacatttttattgttctgtcagagaaaataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14117" stop="16812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14403" g_stop="14485" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14590" g_stop="14677" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="171" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14951" g_stop="14997" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="218" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16180" g_stop="16512" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="551" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="565"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E368852" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14403" e_stop="14485"/>
          <exon e_start="14590" e_stop="14677"/>
          <exon e_start="14951" e_stop="14997"/>
          <exon e_start="16180" e_stop="16512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAAGCAGTGAAAGAAGCTAAGCGA-GGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAGGTACACTTGCATCTCTATTCATGCAGAGATTCTTAAGCTTCATTGGATATAAACTACTGGAATGCACCTATTGACGTTTTCTTCCTGAAAACACTGTTCTGCAGGTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGAGTAAGCAACTCTTAGTTATATCCTTATTGATTTGTTTGGAACATCAGCAATAGATCCTGCTTATTTTCTGTTCTCCCCCACTTAGGATTCATGTAGTTTTCAGAAAATTATGCAAAACTATAGTTTCCCAGGACTTTCTGGTTGTCCAAAAGTCTTTTTTCCCCTGTATATGGAAAACTACACTTAACTATACACATGAGTGTCATCTAACTTTGTGGCAGCAACTTTTTGTCATCTACACTTGTCGGTAACAAATTTTTTTCTGTGATACAGGCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACGGTGAGCTCCCTGACCGACGTTCTTCATAAATCTGATGCCTCGCAGGAACATTTTGAAGTACATTTATAAACTAAAAATAGAAATCTGAGGGATTCCCTTTGTCGCTCTCCCATTTGAGGGATTCCCTACATAGACTAAAATTAAATATCTTGGTGTTAGTGTTCAAGCTGCTTATGCCTACATTACTTGCGAAAAGTATGGCTTATGAAGGTCCCTCATTAAATACCTAAAAAAACTTCTATAAAAAGAAACCTCAAAATTTATGGTCATGTAGTACTACAGCTTGGTTCAAGATGTAGGAATTTTCAATGCTTAATTTTAGGTAGCATGATCTGCTTCATAGTTCCATCGACATATTATGTAGTGTGTCTTTATGGGTACGTAACCATCGAATTGGCCAGTTTGCAGTTTATTAGCCATTTGAAACTGCATAATCATCAGAACCGACTGCAGCTTCATTTACTCTTTACCTATCTAGGCTCCTGTTGCTGGCTGTAACCGTGGTAAGGTGGGGAATCATAAAAGAGACATGTGGAATTATCTTGTTCTTACTTTTAGTTGACTGATTTTACCTCATATAGCATGCTTTGACAATGATCTGCTGTTCCCAAAACTTCATAGCTACATTCCATTTTTGGATGACACTAGAAGTGTAATGTAGATCTGTCCTTCACATTTGATTATTTGGATTGATGGTGGATGAGGCATGTTATGGTCTTTCAGTGGCCTGAATCGCATTATTACCTTGAGCCTGAGGGACGGAAAGATCTGTCATTTTGGGTGCATCAGAGCTCCAAATCTCGTCCTAACTGTACATTGTACTTGTTCTTTCTCGAGACCTAGTAGTAGTGAACTGAAACTTTTTCTCGAAAAAACAATTTGAATCTTAAAATCTCTTGTTCACCATTCTTGAGCTGAGAGTCTATCGGAAACAACTTCTCTACCTTTGAGGCAGGGATAATGACTGCATAATCTCTACCCTCCCTAGACTCCACTTTGTGGGGACTACGTTGTGTATATGTTGTTGTAATCTCTTGTTCACCATTTTGGTACCCATATGCCCTTTTCACATCTGGGGGATGCATTGCAATGTTGATATGCTTGAATATGTTCGTCCTTTTGGTACATGGTATTCTTTCGTGTTCAAGATTCTAATTGGATGATGATTCTTGAAATTTGCAGATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</genome_strand>
        <mrna_strand>CAAAAACAGTAA-AAAAAAAGCTAAACGAGGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG........................................................................................................GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA.................................................................................................................................................................................................................................................................................GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352443" ref_strand="+" ref_description="SGN-E352443 [cTOS-9-N18]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="22760" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23060" g_stop="23481" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23615" g_stop="23621" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E352443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23060" e_stop="23481"/>
          <exon e_start="23615" e_stop="23621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTTTTTTGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTGAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354213" ref_strand="+" ref_description="SGN-E354213 [cTOS-16-C10]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="22760" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23060" g_stop="23481" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23615" g_stop="23621" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E354213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23060" e_stop="23481"/>
          <exon e_start="23615" e_stop="23621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTTTTTTGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTGAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354892" ref_strand="+" ref_description="SGN-E354892 [cTOS-19-N22]">
      <seq>agagctggtaatttcgattttgggggttgtcacagcctcacaggttcgtccattctaatccttgatgtggtcgaaaccagaaaaactaacttgttttattgtccgtgactcgtgtttatgatgagttcaccctaatataagacttgggtgatagattgtatcagttcaatgacgccagaatcaaggacaaaatctaggtgaaggttgtaaaaattagttgaagaatgaaagtagttctggataccagagaccaagaagtggtgttgtgttgcaggtgtatagttttaaggaatactttttcttgacggcacaggctatcaatgtcccataagtataacttaggaaatctgtcattcatttatgataattcggaatatatttgttattttttccttgaataaattaaattgttgttcgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="22760" stop="23781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23060" g_stop="23481" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.443" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23615" g_stop="23621" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="429" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E354892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23060" e_stop="23481"/>
          <exon e_start="23615" e_stop="23621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAAGCCTTTTTTCTTTGTTTTTTGATTTTTCGATTTCAAGGCCAGCCCAGGACAATTCTATTACCTGCCTCATATTTTTCTTTTTTTTTTCCTCAATTGAGATGAAATGTACTTTCACCCACTCTTGAATATTTAGAGATAAA</genome_strand>
        <mrna_strand>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA.....................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213076" ref_strand="+" ref_description="SGN-E213076 [cLEC-72-D12]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25143" stop="26974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25443" g_stop="25861" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26674" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="574" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E213076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25443" e_stop="25861"/>
          <exon e_start="26520" e_stop="26674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAAT</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210281" ref_strand="+" ref_description="SGN-E210281 [cLEC-35-M7]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctnctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25143" stop="26161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25443" g_stop="25861" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E210281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25443" e_stop="25861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTNCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212951" ref_strand="+" ref_description="SGN-E212951 [cLEC-72-C13]">
      <seq>acaaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25143" stop="26106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25443" g_stop="25806" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E212951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25443" e_stop="25806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCA</genome_strand>
        <mrna_strand>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205541" ref_strand="+" ref_description="SGN-E205541 [cLEC-21-A15]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtgaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25144" stop="27058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26758" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="657" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E205541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25861"/>
          <exon e_start="26520" e_stop="26758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTA</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTGACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374660" ref_strand="+" ref_description="SGN-E374660 [TUS-15-N1]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttccttgcaaatgtttgccctctgtcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25144" stop="27054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26754" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="653" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E374660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25861"/>
          <exon e_start="26520" e_stop="26754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGC</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTTGCAAATGTTTGCCCTCTGTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207541" ref_strand="+" ref_description="SGN-E207541 [cLEC-36-N4]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25144" stop="26995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26695" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="594" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E207541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25861"/>
          <exon e_start="26520" e_stop="26695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCA</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215083" ref_strand="+" ref_description="SGN-E215083 [cLEC-78-D13]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25144" stop="26900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26600" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E215083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25861"/>
          <exon e_start="26520" e_stop="26600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCT</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204651" ref_strand="+" ref_description="SGN-E204651 [cLEC-14-K4]">
      <seq>caaaatctaccttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25144" stop="26855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26555" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="454" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E204651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25861"/>
          <exon e_start="26520" e_stop="26555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAG</genome_strand>
        <mrna_strand>CAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214249" ref_strand="+" ref_description="SGN-E214249 [cLEC-77-D17]">
      <seq>accttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacnaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25152" stop="27032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25452" g_stop="25861" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26732" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="623" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E214249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25452" e_stop="25861"/>
          <exon e_start="26520" e_stop="26732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTG</genome_strand>
        <mrna_strand>ACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACNAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214660" ref_strand="+" ref_description="SGN-E214660 [cLEC-79-K24]">
      <seq>cttccttcttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25154" stop="27057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25454" g_stop="25861" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26757" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="646" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E214660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25454" e_stop="25861"/>
          <exon e_start="26520" e_stop="26757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTT</genome_strand>
        <mrna_strand>CTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207840" ref_strand="+" ref_description="SGN-E207840 [cLEC-32-J24]">
      <seq>ttttaagttgcaaaaatatcaaaagtacaagtttgtaccaaaaaaagaagaaaaaaaatgacaagtggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcaccttcatgatagaggtggccaatgaattcgagctaccagcctatgttgtctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25162" stop="27046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25462" g_stop="25861" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26746" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="627" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E207840" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25462" e_stop="25861"/>
          <exon e_start="26520" e_stop="26746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCC</genome_strand>
        <mrna_strand>TTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTTCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTGTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201545" ref_strand="+" ref_description="SGN-E201545 [cLEC-4-F18]">
      <seq>ggcaagaaaatagagttgctcttcattccttctccaggaattggtcacttagtatccacagtagaaatggcaaaacttctcataactagagaaaagaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25228" stop="27017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25528" g_stop="25861" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="26717" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="532" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E201545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25528" e_stop="25861"/>
          <exon e_start="26520" e_stop="26717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATT</genome_strand>
        <mrna_strand>GGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213162" ref_strand="+" ref_description="SGN-E213162 [cLEC-72-G16]">
      <seq>gaacatgtccattacagttcttattatccaatcacctcatgacaacaagctcccttcttatattcaatcattaaccaatttcagctcaagtttgaaattcattcacctccctcaagatgacactgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatcgtcatcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcatttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25323" stop="27304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25623" g_stop="25861" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26520" g_stop="27004" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="724" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E213162" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25623" e_stop="25861"/>
          <exon e_start="26520" e_stop="27004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGTTATTGTGGGTAGAGTAAAGGCTTATTTTTTTAATTTTTTATGCTACAATGATAGTTTTGAAATTTTAGTCTTATGATGGATAAAGTTCAGTAATTATACGTGAAAATTCACGTGCAGGTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCT</genome_strand>
        <mrna_strand>GAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCATTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212922" ref_strand="+" ref_description="SGN-E212922 [cLEC-73-F18]">
      <seq>tgttttaaagctactcaaaagtaaccttttcacctcctatattcctgctcataagcctgcagttagagatgttgtagctgaaattgtcaagacacaatcaaatgttacactagcaggtatgtatttcaaattaactttatgtgtccaaggctttgatacagtaacaaggtatgttgcttggactctttaaaaatgttgatggatatgtgtgtcggatactgcaaaagtagtgtacataattttggagagattgaacatacaacttgtgatttatagattagatgcatgtcatcattgtcatgaatttggctgctactacaaaaacaaaaagattggtacttccttccctcccaactttatgatacttttaagcatttcgagagacaaatagtttttctcaaagcatgatatgccttttcaagtattaaaaattattaattattgtgacttatagtatgtttcaaatataaattttatttacaaaagcttaaagattatatgcccgaattcatggtcaaaatttaaaagtttggctctcgaaatccaaatgatgtcgcatgaccgggggagtattttaagttgaaaggggtgttgcactactacaccaaccttctcaatttaacgcgactagaaaatgtatttcaatgactttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25446" stop="26702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25746" g_stop="26402" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E212922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25746" e_stop="26402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</genome_strand>
        <mrna_strand>TGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208986" ref_strand="+" ref_description="SGN-E208986 [cLEC-38-K2]">
      <seq>tcgacttattttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26229" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26529" g_stop="27075" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E208986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26529" e_stop="27075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>TCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208109" ref_strand="+" ref_description="SGN-E208109 [cLEC-34-D24]">
      <seq>ttttgcacctccatgatagaggtggccaatgaattcgagctaccagcctatgttttctacacctgtggagcagctcctcttggacttcagttccatatacagagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttcctgcaaaatgtttgccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagttttacgatagagcaagttaaggaaatatcatatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26237" stop="27375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26537" g_stop="27075" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E208109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26537" e_stop="27075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</genome_strand>
        <mrna_strand>TTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205513" ref_strand="+" ref_description="SGN-E205513 [cLEC-28-L1]">
      <seq>gagccttactgatgactttggaagagatattactaattacaaagatgaacctgaagcagaactttctataccaacatatttcaatccatttgctgcaaaatgttggccctctgtcgcgttagacaaggaaggaggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtatgatgattaatacctttcttgaactggattctgacgcgataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagttgtatcagaccagaatatgatgaaatggttagatgatcaacccacttcatctgtagtgttcctctgttttggtagcggaggaagctttacgatagagcaagttaaggaaatatcctatgctctcgagaatagtgggtgtcggttgttgtggacattgagacaaccaccacagatagatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26338" stop="27436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26638" g_stop="27136" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E205513" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26638" e_stop="27136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTT-TATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCTCGAGAATAGTGGGTGTCGGTTTTTGTGGACATTGAGACAACCACCACAGAAAGATGCAACA</genome_strand>
        <mrna_strand>GAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTGCTGCAAAATGTTGGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATGATGATTAATACCTTTCTTGAACTGGATTCTGACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTGTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGCTTTACGATAGAGCAAGTTAAGGAAATATCCTATGCTCTCGAGAATAGTGGGTGTCGGTTGTTGTGGACATTGAGACAACCACCACAGATAGATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201016" ref_strand="+" ref_description="SGN-E201016 [cLEC-5-B20]">
      <seq>ggttccgccatgtttcttgaccttacaagaaggtttagagaaaccaaaggtataatgattaatacctttcttgaactggattctcacgccataaacttcctctcacaagacaagaatataccaccggtttaccctgtgggacctgtattgaaccttaataatgttcaaggtgacaacttgagtttatcagaccagaatatgatgaaatggtagatgatcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="26471" stop="27295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26771" g_stop="26995" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E201016" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26771" e_stop="26995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCC</genome_strand>
        <mrna_strand>GGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCCATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGG-TAGATGATCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349502" ref_strand="+" ref_description="SGN-E349502 [cTOS-1-K23]">
      <seq>tattttggagtgccaatggctacttggccaatgtacgcagagcagcaagcaaatgcatttcagttggttaaggatttggaaatggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggccaaaaagttatagtgaaagcagaggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttctaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27500" stop="28683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27800" g_stop="28382" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="594"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E349502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27800" e_stop="28382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374659" ref_strand="+" ref_description="SGN-E374659 [TUS-15-N1](-)">
      <seq>tggcagtcgagctaaagatggattacaggaaggaaccaacagggaagatgggcctaaaagttatagtgtaaacataggagattgagaaagcaataagagaacttatggaccctgaaaataaaattcggatgaaagtgaaggagatgaaagagaagagcagagcagcaaccacggaaggaggctcttcttacacttctattggaagtttcatccagagtatcatggagaatactccatgattagctgctttgatatgtttttccttgaacctagggtctatcagaaacaacctctctacctctagaaggtagaagtaaggtttgcatacagtttactctcccctgacccacttgtggattacgtggagtatgttgttgttgttgttgtaatttgatcgatatagttggttatgtaccctcgtttttaagttactagcaaaggttgcccgtgctgagcacgaccaagattgtattagttgttataatatctttttttagctgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27582" stop="28683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27882" g_stop="28382" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E374659" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27882" e_stop="28382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</genome_strand>
        <mrna_strand>TGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCTAAAAGTTATAGTGTAAACATAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTTTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318379" ref_strand="+" ref_description="SGN-E318379 [cTOA-29-B6]">
      <seq>tattttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatgtactacgggcaggtaagcgaggcaaggcagaaaaagtgggagagtttaccatggcctatgtggagaaaccaaacatgagtgagatacattgggtccctgatccgaagaatcctaagatatatttgccagtggattttacttcttacatttcatcaacacattgagtattgggcaaacttatatctgactggtactttcctttaaactctcttccatgatggttgcttgaatatgactcgatcgagtttatgttaatctattcagttcagattctttgaagggtcttatgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32933" stop="30365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32633" g_stop="32463" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30665" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="734" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E318379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32633" e_stop="32463"/>
          <exon e_start="31227" e_stop="30665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</genome_strand>
        <mrna_strand>TATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286722" ref_strand="+" ref_description="SGN-E286722 [cLES-14-H21]">
      <seq>aaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatgtactacgggcaggtaagcgaggcaaggcagaaaaagtgggagagtttaccatggcctatgtggagaaaccaaacatgagtgagatacattgggtccctgatccgaagaatcctaagatatatttgccagtggattttacttcttacatttcatcaacacattgagtattgggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32915" stop="30482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32615" g_stop="32463" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30782" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="599" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E286722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32615" e_stop="32463"/>
          <exon e_start="31227" e_stop="30782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAA</genome_strand>
        <mrna_strand>AAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213251" ref_strand="+" ref_description="SGN-E213251 [cLEC-72-L22]">
      <seq>gtactttaattgttggctgacaattattttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatgtactacgggcaggtaagcgaggcaaggcagaaaaagtgggagagtttaccatggcctatgtggagaaacaaacatgagtgagatacattgggtccctgatccgaagaatcctaagatatatttgccagtggattttacttcttacatttcatcaacacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32957" stop="30494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32657" g_stop="32463" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30794" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="628" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E213251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32657" e_stop="32463"/>
          <exon e_start="31227" e_stop="30794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGA</genome_strand>
        <mrna_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAA-CAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319302" ref_strand="+" ref_description="SGN-E319302 [cTOB-16-D18]">
      <seq>ttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatgtactacgggcaggtaagcgaggcaaggcanaaaaagtgggagagtttaccatggcctatgtggagaaaccaaacatgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32929" stop="30575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32629" g_stop="32463" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30875" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="520" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E319302" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32629" e_stop="32463"/>
          <exon e_start="31227" e_stop="30875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAG</genome_strand>
        <mrna_strand>TTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCANAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319140" ref_strand="+" ref_description="SGN-E319140 [cTOB-16-O1]">
      <seq>ttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcataagcaacagtgccgcacgtcgccgtctcagcagcagcagcagcagtgccgcacatccatcctgcgatctcaaagatattgtatcatattgtcaaaggatgcagtttctaaaagacatcgtacctgctgcattgaacaatataaacacaaagtttattgttttggacaaagggaggatagatttagaagggcaacacaagacatgtttggcactagttgcagatgagacagctgcggttcactttcaaatgtggggtgatgaatgtgatgtttttgaacctggggatatcatccggttagaaaatggcatcttttcttatattcgcaataaccgcaataaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32929" stop="30658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32629" g_stop="32463" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31227" g_stop="30958" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="437" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E319140" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32629" e_stop="32463"/>
          <exon e_start="31227" e_stop="30958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAGGTAATGAAAGTAGTTAACTAATTTGTTGAATCCAGAGACTTCAATTGCAGTCGTTAACTAATTTGTTGAAAAAATTATTCGAAAGAGTTAACCGCCTTACAATGAAGGCATTTTTTTGATTAAACCAGTGTGTATCTTTGTCAATTAGTTTCTTTTTTATTTTTTATTTTTTTTCGTCTAGTGTCGTTGTTATGCCAGTTGTAATTGTGTGTATAACGGCTCAGTCCATACAATGGTAAATCTTGTTTCAGAAAGTTCGTGTCTTTTAGTTGGTTTTGGAGTTTAAATTGATGATTTGGATCCTTTCTGACTTTTCGTGAATAGGCTTTCTGTTTCTTGGTAGAATAAGTGTATAAACATTGATGAATTGTGTAATATTATACTGGGGAATTCTTAGAGTTTGTATTACGGCTTATGCTATGCAACGGTAAATCTTTGTTACATAAAGTTTGTGTCTTTTAGTTAGTTTTGAGCTTCCGTTGATGTTTTTGGATTTCTTATATTGACCGTAGTTCTCTTCCTTATTAGTTGGAATTTGAACATTGAGGGGAGCTGTCTGATATTATACTAAAAAATCGTAGAATATGGATGACTGCTTATGCCATGCAATGGTAAATCTTGTTTCATGATGTTTGTGCCTATAAGTTGGTTTTTGAGCTTACATTGATGGTTTTGAATTGGTTCTTGGATTTTCTATATTGGGTTTCTGTTTTTCAGTAGTTCGCATTTGAAATTGGAAGTTGTGATATTATAGTTGAAAATAACATACTATTTCTGATCAATTGACGCCTTCAACCATATTTAAATACTAATTACTTCTATATGCTTCAAACAGTAACCTACTATTGGGGTAATAGTCTCAACAATAAAGTATGTTGTTTTCTTCTTTCTTTCTAATAGAGAGCTATGCACTCCTTGTGTTTGTTAAAATGCCCCAGGAAAAATAGTTTGTCACTAAGGGTTCCTTTGGTAGCAGGGTAGAATTATGCCGGTAATAGTAAAATATGATGGTTGTGTTATCTTCTTTAAGAAAATTTGGTGAAATGCAAACAAATTTTATAAACAAAATTTACCTTTAAAGCAATTACATATTATGTAATCAGGAGAATATAGTAAATATGACCAATACGTTGTGAAAATAATCATTAAATTTTTGATTGGAAAAAGAGTGCGGAAAAGTTAAATTTTTTGTTTGCCTGAGGTAATTAAGACAGTTTGGAAATTTTTGGTTGCAGATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATG</genome_strand>
        <mrna_strand>TTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCATAAGCAACAGTGCCGCACGTCGCCGTCTCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212424" ref_strand="+" ref_description="SGN-E212424 [cLEC-74-N23]">
      <seq>gtactttaattgttggctgacaattattttccccttcccctcaaaaaggtgaaacccgtccctctcgagtctctgtcttcacgctgctcgcaattcgtcgccgttgccgtggccgtcgcagaagcaacagtgccgcacgtcgccgtcgcagcagcagcagcagcagtgccgcacatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32957" stop="32180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32657" g_stop="32480" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E212424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32657" e_stop="32480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCC</genome_strand>
        <mrna_strand>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706818" ref_strand="+" ref_description="SGN-E706818 [FA31AB01]">
      <seq>gatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagagaaaaaagaagaagaagaagacagcagcattcagaggttttcatctttctcagaaaacgaagaagatgaaacattggaagaagaagagaggttcaaatcaattattaagaaggtgatcgaagaaacactcttgttagaacacattgatagagaagatgcaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggggacggctaagcttgtaccggagacttgtttctggaagaatatgaagattgagccacatcgacgagctacatttggattcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35881" stop="34464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35581" g_stop="34764" g_length="818"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E706818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35581" e_stop="34764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGC-GGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</genome_strand>
        <mrna_strand>GATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGGTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319040" ref_strand="+" ref_description="SGN-E319040 [cTOB-14-F21]">
      <seq>aaacactcttgttagaacacattgatagagaagatgccaaaacaaattcaacacgaacacaaacacgaagaagaagcaaaatctgatgcagtattttcaaacaatgaaaacgaaaaagaatcgagaaaacaacagaacgaatcaattcttccagattgcttgcttctaatgatgtgtgagcccaagctatccatggaggtttctaaggaaacatgggtatacagcagcaccgaagtaaaacaagctaaaacagtgacgacaaagaagaagaagaatgaaattcccgaggatccaaagagaaggcgaagcattgacaagagtaaacaacaacatctcctcctccaaccaccaaggtcatcgtgttctttcccggcgaccggagtttcgccggcgatatccatggcaacgatgatagagcagaaactggtaaacgcagtggcttacgagccgttagtgttgacaaggtgcaagtcggagccgatgaggacggtggcggggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35643" stop="34543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35343" g_stop="34843" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E319040" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35343" e_stop="34843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCTTGTTAGAACACATTGATAGAGAAGATG-CAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGA</genome_strand>
        <mrna_strand>AAACACTCTTGTTAGAACACATTGATAGAGAAGATGCCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224613" ref_strand="+" ref_description="SGN-E224613 [cLEL-27-J4](-)">
      <seq>agagaaaatgcaaagtagtatgagaagctcaagaaggcatgtgttgaaggtattgagttcaaggatcatgacgatgagagtgttgaaatgaaggaagagaaaggtagagttagcatttgcattccacctaaaaatgctttgcttcttatgagatgtcgatctgatcctataaaatggcggatattgctaatcgattctgggaatcacctgctcgggaagaaactaatgagaaagaaatcggagaaaatgcggaggtgaaagaagtagaagatacagaaaaccctgaatgcaatgtactacaggaaactagtgtttctgtagatctggtagaaaatgaagaagcagtagaagtcccagatagtagtaaggatgaagaaaagctcaaatgcgatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36272" stop="35150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="35451" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E224613" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="35451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGA</genome_strand>
        <mrna_strand>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTG-TTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTAT-AAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACCCTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCCCAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224689" ref_strand="+" ref_description="SGN-E224689 [cLEL-27-J4](-)">
      <seq>tattgagttcaaggatcatgacgatgagagtgttgaaatgaaggaagagaaaggtagagttagcatttgcattccacctaaaaatgctttgcttcttatgagatgtcgatctgatcctatgaaaatggcggatattgctaatcgattctgggaatcacctgctcgggaagaaactaatgagaaagaaatcggagaaaatgcggaggtgaaagaagtagaagatacagaaaacactgaatgcaatgtactacaggaaactagtgtttctgtagatctggtagaaaatgaagaagcagtagaagtcacagatagtagtaaggatgaagaaaagctcaaatgcgatgaattaacgccagaaacagaggaacaagatgaagaagacagtgagatgaagggacttgtagcagtagctgcagtagaagtaaactccattgttgatcaactccttgaatcagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="36221" stop="35150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35921" g_stop="35451" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E224689" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35921" e_stop="35451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGA</genome_strand>
        <mrna_strand>TATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729336" ref_strand="+" ref_description="SGN-E729336 [LA20DA05]">
      <seq>aaaaaaacacagcttctctacacttacagacccccaaatccatggctacctacaacagcaataccaagaaaccattatcacattactgaaaactccttcatctcttcttttttgtatactttcttcttcaaatgaaactcaccaaatccatccttagtcctagccatgctcggcatgacccacctcttactcttcccacttctctcagtcggaagcttaaagctaatggcagtattaaaggcggacaatccccagctacgttttctactaccaccggaaagaaacgagggtcgagttttgataacccggaaccttcgtctccgaaggtgacttgtattggtcaggtgaaaatgaagacgaagaagaaagttaggcaaacacggaatttgtctaatagaaggagtgatataagtttcaggaagttggaagaagaaaaaaggggagttttgattcagaatcagaggagttctagtgtgcatttgcaggcgcaagatcaatgtgcggtggcgcatagaaatcagagatgggtacatttgccagtaacgatatatgaagctttgagagagtttagctgtttgtttccatgtcggtcttcgtgtttttcgaatgagaaaggaaaacaacaagataaagttaatggatctagagatgttgataataataatgggcagaggagatgtgaggatgttgttgctagatggctagttgcattacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37068" stop="35752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36768" g_stop="36052" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E729336" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36768" e_stop="36052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</genome_strand>
        <mrna_strand>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTTCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356236" ref_strand="+" ref_description="SGN-E356236 [cTOS-20-D4]">
      <seq>cttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaatttggttgcaattttcaaatttacttactggtgaattaagggtgattgctaaatatccaagtatgtgtataatttgtctatttctaaaattgattagatctaaatttaacaaaagtaaattatatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41016" stop="39919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40716" g_stop="40222" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="511"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E356236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40716" e_stop="40222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</genome_strand>
        <mrna_strand>CTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261780" ref_strand="-" ref_description="SGN-E261780 [cLEG-61-E5]">
      <seq>agggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaaatgcattgcgaatggtcgtactatgtcacaggggagatgtctgttattttttagaaaaaaaagaaatagataattatgttctgaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43041" stop="40049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42741" g_stop="42631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40912" g_stop="40350" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="674" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="698"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E261780" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261780" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42741" e_stop="42631"/>
          <exon e_start="40912" e_stop="40350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGA</genome_strand>
        <mrna_strand>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317071" ref_strand="+" ref_description="SGN-E317071 [cTOA-27-M16]">
      <seq>cggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttggatacaattggtgtgccagatacagagagaatgggcattagccttttaaagaaaggtggacactacatgacgttacagggggaggctgcatcggtgactgataggcatggactagctattggtcttcctatggcagcagccatcttgctgaagaagcaaatccaatatcgatattctcatggaatagaatattggtggaattatatgagggctgatgctgagggtttacatgagatacgccggttatctgaggctgggaagcttcaactcccagtagataaaactttcccaatttcacaggtgagagaggctcacgaggccaaggatagacgacaaattcctggcaaagtggtgctagaaattgactgatttaactggacgatcttaaccaacagtgcgtggattcagtgcacaagtctataatatctcatgcaatctggtattacactgaatccttgatgcctattgcctcgtatacgatatcatctctttgcagaataaccagacccaacttacactctgttggcatctataggaagaaaactgtgcaacctgtaaattctcaggacattctcaatcttttttcttttcttccaagtatccgtcattgtttctatgttgcgttaaacatttaagtgagccatttatcgtgctcgtgacaggaaatgcattgcgaatggtcgtactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43450" stop="40109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43150" g_stop="43117" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42969" g_stop="42850" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="154" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42739" g_stop="42631" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="263" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40912" g_stop="40409" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="766" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E317071" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43150" e_stop="43117"/>
          <exon e_start="42969" e_stop="42850"/>
          <exon e_start="42739" e_stop="42631"/>
          <exon e_start="40912" e_stop="40409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAGGTTAGGAGCTATCTTACCTTTGTAACCGTGAATCTTCCACTATTTTTTCTTATAAATGCCGAAAAATTGCCACACAGTCTTAAGCAAGATTTCCTGTTCTTTGCGCATAGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAGGTATTGAGATCTCCTGTAGTTTCTTTGAACTGTTTGGCAGAAATGGGTTTTTCCTGGGTAATTATGAAAATTTTAGAACACCCTTTATCCAAAAACAGGAAGCGAAAAAAGCGAACATGAAAGTTTAATTCATCCCTAACAATATGATATTTTTTTAATTTTTTTTTTAATTTTGTGTTTCTTCTCTCTCATAAAAATAGATATGTTCTTCCTATATGGCAGTGAATTTCAAAACAAAGTAGATAGCATAGCAGGAAAAATAGATTGGTGAAGTTGTAGGTACCATCTCATTATTAGGTGCAACTCCAATCAGATTCTGATTTAGAGACTGTTTGGGTTGGCTTATTTTAGGTGCTTTTAAGCACTTTTAGAGTGTTTGGTAAGTTAAAAAAGTGCTTATAAGCACTTAGTTTTAAGCTAAAATTTCTAGCTTATGGCTTTTGGTGTACAAGTCAAAAATGAAAAGCCAATCCAAACTATTGGTTGAAGAGGTCAGCAGAGGTTATTGTCTGAATAATAGTAGCTAAAGCAACCAGAGAGCTGTTTTAGATTGACCTGGGTTGTGATGTTAACACATCTTTTAAGGCAAGAGGTAAACCAGGGGATGATACCTTCTTCATCTATTTAAAAAATTGTGATGCTCTTTTCAAGTGTATACTATAGTCATTCCGATATGGCAATGACCTTATTTTTTGGAATGGTATAGATATTAGCATATTTCATGCGTATTAACAGGTTTTAGAAGGGCTTTTCAGTGAGAATGACATAGAGATCACTGATCTTCATTAAAGTGGATAAGATGAAGAAACTTTCTTCCATTTTGTGACATCATATACTTTATTTAAAGTAGACGGTGAAGTCATTCTGATATTTTATGACCTTACCATATAACAGATTTTAGAAGGTGTAAGTGAGAATAACATAACAAGCCTGACCTCCATTCTTGTTAATTGGGCTCTCTCTCTTTCTCCTCCTCCTCATTCACAAAGGTTTTCTACGAGGAATAACCTTTGGGTAGTTCAGGACAAATAAGGTATGCAGATTTGTTGAGGTGATTTTGTTCCTAAATCCTATTTGATAGTTCTCGATTTCTATTGTTGATAAAAGCAATTAATTTTATTGATATATTGGGAAACAGACCTGCTGAGTGGACCGAATCACTATGATTGATAATTTTCTAATATATTGTTCTCTGGAGGAGATAGTCTAGCTTTGACCAATATCTAATCTAGATTCCATTCAAATGAACCGCTGGGTGGTCCGAATCAGTTTGGATTGACCTTGATCATCTTTTCACATTTTCATTTATTTTAGAGATATTGATCTCTTTATTATGATAGGCTAATAACGATAAAGTATGCCCAGGGTAACTCTCACTTCAGGTTTCAAAGTGCAGAAACTTCATTCTTTTGTAGCGTGTGACCGCCTTTTTTTTAAAAAAAAAAAAAAGCATGTGACGTGTTTAGAGTGCTTGGAAGAGTGTGGCTGTAGTCGATCACCATGAGAGCATCCTACTACTCATCTGATGTTTCAGTTGGAGAGAGAGAGAGAAATGTTTTTTTGGGGTCATTCATCTGACATTTTGAGTTAAATTTTGTGGCTTGTCTATTATTTGGTATTTATTATTGTTAATAGCTTGAGACTGAAGTGTCAAAAGCTGTGCTATTGAGCCTTATAGGTGCTTTAACTATTGCATTTCTTGTGTTTGCATGATACAGAATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATG</genome_strand>
        <mrna_strand>CGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG..............................................................................................................GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGG-AAATGCATTGCGAATGGTCGTACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555359" ref_strand="+" ref_description="SGN-E555359 [cTSC-2-D1]">
      <seq>acactctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtggaggagagagtataagtcgcattttagcagccggtgctgagcaggccattgactataccagtgaggatgctgaagtagcacttaaggggcattttgatgctgtcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47451" stop="42626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47151" g_stop="46838" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="542" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="616" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43117" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="776" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42969" g_stop="42926" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="820" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E555359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47151" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43117"/>
          <exon e_start="42969" e_stop="42926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAGGTGACCTTGCAGTAGTAGTTCACGTGTTTGATTCCATCATGTTATTTTATTTCAACATGATATAGTTGATTGGTTTTTTAAATGGCATTATTGGTGTATTCTGCTCTCTGTCCTTTAGCTAGGGTTGACATGTTTGCTTGTTTACAGGATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGA</genome_strand>
        <mrna_strand>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG...................................................................................................................................................GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698155" ref_strand="+" ref_description="SGN-E698155 [FA05BG04]">
      <seq>cccttaatttgctgctcaatttctttgcaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatagggtattggtcataggtggaggaggagcagtaggtttctctgcaattcagcttgctgtggctgcaggctgccatgtttctactacgtgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47402" stop="42881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47102" g_stop="46838" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="492" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="566" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43181" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="662" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E698155" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47102" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGG</genome_strand>
        <mrna_strand>CCCTTAATTTGCTGCTCAATTTCTTTGC-AAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316034" ref_strand="+" ref_description="SGN-E316034 [cTOA-23-G20]">
      <seq>aacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccatagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtactgccagaataagagaggggcatatggtattggtcatangtggangaggagcagtacgtttctctgcaattcancttgctgtggctgcaggctgccatgtttctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47429" stop="42888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47129" g_stop="46838" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="520" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44792" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="594" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43276" g_stop="43188" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="683" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E316034" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47129" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44792"/>
          <exon e_start="43276" e_stop="43188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGGGTATGTTTTTATCAGATAGGTTAAATTTTTTCATCAGTGAAATAATTCTCTTTTCTCCATCTCTTATCACCCTTTGTGAAGGAGATGCAGGATGAAAGTAGTCTGTACTTCTACATCCAGTACTGGAGATGTGATTAATACGCACAATGTATGAATCTGACATCATCAGTTAGACTTGAATAATTACCTCTGAGAAAAAGGAAGTAAAATCTATGGCCTATGCAAGTATTACCATGCCATGAAAAGTAGTAATTTAGGAAGGTTTTCCTCTGCAATTATATTGCTGAGTCATAAGCATTTTCTAAAATTGTTGTGCATTTAAATTCTGAATTTCTGTTTTCCTGGGTTTGGCAGCAGACAGTTTCCACTTATAAAGAGGTTAACAGCTTCTAGGAAATTATGATCATTGAACTTTTTAAGCATGGCATGTGAGTCAAAGTATTTTAAGGGATTGAAACTTTACGACTATTTTGTGTTTTTCTTCATCAAATTACTTTTCCCACTTAGTTTTGGCGAAACACTGAAGTGATCAATAGATAAAGTTATTTACTGGGAGGTCTATGACCAACATTATATTCTTTCGAATGTAATTATGTAATAATGATTCTTACGTTGGAGTGTATATAAACTTTTGTAACTTGGAATTGCATAAAGAATTAAGTTCAAAAAACATTTATGTCGGGCATAACGGGAAAACGTGGAGTTGCTCTAATGCTGCTGAACAAGACTATCTTGTTCAGCAGACGAAATTGGTCAAAAGGATGGCTTTTCCTTTTTCTTTGAGAAACAGGATGTGGATTCATATGGATTGAAAACCTTAGCATATAATACTTGCTATTTATTGCTTATGTATATAAAATAATATAGCAGCTTACCTATTTATTGGGGGTAGCTGTTCAGTTCTTAGGTTCTGGATAAGTGTTCACTACACACCAAACTGAATTAGTTCAGTTTGGTGTTTCTAAAACAGCTCTTCCAGTGTGAATGAGAAATAAAACATCCTTATTTGCTCTTTCTTTAAATTTCATGAAGCTGGAAGAAGAGATGCTGAAGCTACTTTTTGCTAATATCAACTATGTGTATGATATTTTTGTTTTTGATCTCCCTTTCTTCATCATCGACCTAATCTATGCACTAGTACTGATTTAACTGTCTAGATGTATGTAGAAATTGCACTATAATAGGAGTTTTGACAGGAAAAAATTGAGAACACAGTTATCGTGCCTGTCATTTGATACTGGCAACTGGAATACAATTAGAACCATATCTTGTCATCCGTAGAATTATATACCTTCAGGTCTATAGATACCTTGAGGATTCTGAAGGAGGATATTCATGCTAAGAAGAATAAAAAATGAAGAAAACAAAATGGAAAAAAGAGTTGGTATCCTTTTACTTCATATTGAGCTCATGATAGTGAATATATGTTGATGGATAGAGACAATATGATGCCTCAAAATGATATATGTGTTTTGTTTATACTGATATCATTATTTCTCAATCAAATTACTTCAGGCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTA</genome_strand>
        <mrna_strand>AACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCATAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGGTATTGGTCATANGTGGANGAGGAGCAGTACGTTTCTCTGCAATTCANCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236599" ref_strand="+" ref_description="SGN-E236599 [cLED-13-H17]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcggaagatgaacttgctccaaagccgggatcactttcacatgtggaagccagtgctatcccttttgctgctctaactgcttggcgtgcgctaaaaagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47388" stop="44509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47088" g_stop="46838" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45182" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="479" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44865" g_stop="44809" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="536" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E236599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47088" e_stop="46838"/>
          <exon e_start="45409" e_stop="45182"/>
          <exon e_start="44865" e_stop="44809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTGGTATGTTTTCTGTTTGGTTACATTTAGTCAGACCAACTTCCTATGAATACTTTTCTGCTCTAAATAATTTTTCTGGCTATTTGCGATCAGTTATAAAATCAGTGTCTATCTTGTTTCCTACTCCTTATACTGTTACTTTTATTGGATGCCCTCTCCACCCCTCAGCCTGCTGATTAAGTTATCAATTTCTGAAATTCATTGTTGTTGGATTAATATCCCTGTCAATTTTCACTCTTGTTATCTGCATCCTGTCACATCACATATCTTGTTTTTTTTACTACTTTAGCATGCTAAGGTTCTATATGTTGTTCCGCAGGAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG............................................................................................................................................................................................................................................................................................................................GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253521" ref_strand="+" ref_description="SGN-E253521 [cLEG-24-I6]">
      <seq>tctttcactgaaccattcaacaatatgcatccattttccccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaagttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattcttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47447" stop="44924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47147" g_stop="46838" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45224" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="496" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E253521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47147" e_stop="46838"/>
          <exon e_start="45409" e_stop="45224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCG</genome_strand>
        <mrna_strand>TCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAAGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247609" ref_strand="+" ref_description="SGN-E247609 [cLEF-42-P21]">
      <seq>ccaaatcactgaatttgctgctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtacagctgtgtagctgtcgcaattcctagggccgaagatgctggaatttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaggggtacttatactgactatgctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47408" stop="44929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47108" g_stop="46838" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45229" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="452" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E247609" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47108" e_stop="46838"/>
          <exon e_start="45409" e_stop="45229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTC</genome_strand>
        <mrna_strand>CCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTACAGCTGTGTAGCTGTCGCAATTCCTAGGGCCGAAGATGCTGGAATTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233039" ref_strand="+" ref_description="SGN-E233039 [cLED-6-G21]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgattttgggccgagatataagtggtgaagttgcagctgttggaaattctgtcaagtcacttacagttgggcaggatgtatttggtgctctgcatccaaccgctgtgaagggtacttatactgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47388" stop="44936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47088" g_stop="46838" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45236" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="425" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E233039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47088" e_stop="46838"/>
          <exon e_start="45409" e_stop="45236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTAT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAAGGGTACTTATACTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235931" ref_strand="+" ref_description="SGN-E235931 [cLED-16-H24]">
      <seq>ctcaatttctttgcaaaacaatgatccgattgagatatcggaggattgagattggtactggtgatggaggaatttcgaatttaggttttggcaaaagaggtattgttacaagctgtagagctgtgttgttgccgcgatttggtggaccggagatgcttgagtttcgtgacaatgtatctgttcctgatctaaaacctaatcaagtgcttgttcgtgctcgtgctgtttcaatcaatccgcttgataccagaatgcgatcaggctatggacgttcaatttttgaaccacttctaccattgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47388" stop="45057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47088" g_stop="46838" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45409" g_stop="45357" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="304" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E235931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47088" e_stop="46838"/>
          <exon e_start="45409" e_stop="45357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGAGTTAGTTCAATTATTTTTATTTTCCAATTTCATTTGTTTATTATGATTGATTGAAAATGTAGAGTGAAATTTACCTGTAGTATAATTTCATGTTGGTATTTGGAACTTATGTGTTTTTCAGCTGAGAAATCGATTTGTCTTGTTGGGATAATTATATGAATTCTATATGATTTAGACTATTTTTATGTTGGCTGTCATTTGCCTTAACCTATAGTTAGTTCAATGAGTGAATGGTGAAAAGCACACCTAAAATATTCAGTTTTTTGACTTTCATGACTATCACCAAATGTTTTTTTAAACACACCTCAGTTATCCGTTGTTCACTTTTTCTATTTGAAATATCGCCTTCGTTCGGATAGGAAAAGTTAACAACTGATAGTTGAGGTGTGTTATAATAAACATTTGGTAATAGTTAAAGTAGGGAACTCACATGCCGGATAGTTCAGGTATGAAACTCAAAAAGTCAAAATTTTGATCCTTCTGATTAGGAACGTTACCTAATTGACCTATAGTACAATTTTTTGTTGGTAATTGAAACTCAGTGTGTTTTTCAGTAGATATGTTTAATCCGTTATACCTCAATTTCTGTCTGGTTAGGATGATTATATGAATCATCTCTTATTTAGACTATGTTTTGTGCTGGCTGTCATTTCTGCTTTATTTTGTGTAGGACCAACTATACTTTTAACAAACTTAAATAGTTGGAGTTGTCTGACAATCTCAGAAAATTCAGGCGGGTCCATACAATGTGCTTGAGGTTGAAGGTGAATAGAGGGAAAGGGGACATGTGAAAAAATTGTTTAAGTTGGGGAAAATTTTTGTGCATTTAAGACCTAGCGATCTATGGTTTTCATTTCTTTCTTCCTTTTGTTTTTCTCTGAGAAAGCATAGACTTCCATTTTAGAGAATTCTTGAAGTAATGATCTCTTAAACATAGTGGAGCATCTTTGATCTATGTAATTGATCCCTTAATTTTCTTTGTTTATGCACCACAAGGCAGTTGTTGAATAAGTAAACCACTTCTTAAAGTTGATTATGAACAAAGATTTTTCTGATCGTTCATTTATAATAAAAAATAAAGGTATAAGAACTTGTTTCACAGAAACCATGCTTCCAGATGAATACAGTATGAAGGGAGTGCAATGCAGATAACATCTAAAATAAAATGTCTTATATTTTTCTCGTCTACAATGATTCTGTACATGCGTCAATTCAATGTGGAACGATATTAGTTTGGCGGATACCATTCCGAATTTTTTAATTCTACTATTAAGAGCTGGTAATAGTTATAAAGCTTGTGCAAAGGTTTCCTCTCAATACTTTGAACTTATTTGTTCCTGGGAAGCTATGCCATAGAAATTGTGATCACAAATTCATCTTCACATTATTTTGCGTTGAGCATTTAGTAGATGCTTTAATATGTTTCAGATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTT</genome_strand>
        <mrna_strand>CTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368680" ref_strand="-" ref_description="SGN-E368680 [TUS-22-N6](-)">
      <seq>ttttttttttttttttttttttttttttttttttttttttttttaaaaaacaaggaactgcaatttcattaagtagactatcaccacttttcaactacaatcacagaaactccttggtccaatattttttcacatgatacaagcttttttgtagctagaactttaatcaaaatcaaataaaagccctactggggaacgaatgttgggagcaaaaaaaatccaaaattgtaatcacaactttaaaaaagcgccaacaggaaggcttaggatatatgaatttagtacaaaagcttggcagttttgcagggaaaagccacaaaagagatgatgtgttcctcctttcactagcaaaaccagtcttggttggatccatgtcatgatttttgaaactgaataataagggctggcgagcacaaagttctggcaccccatgatagtgtgggtgtgaaaaagagagagaggatctaattataattcttcctttgagcatttcacatccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="40882" stop="50434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48203" g_stop="48246" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.614"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48247" i_stop="49675" i_length="1429">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49676" g_stop="50134" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="503" r_length="459" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E368680" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368680" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48203" e_stop="48246"/>
          <exon e_start="49676" e_stop="50134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTTAATCTTTGTCAATTTATATGAATTATTCTCTTTATGTGTTTTACTACTCCGTCAACCGCATACGACCTCCAAGAATAATAAAAGGAATAAAAGTCGAACAATAACTACTTAGATTTTTAAATAATTTAACATACATTAGTTCATAATAATAACACTTATGTTCAAATTATGTCAAATACTGTTATAATAACCAAAAGAAATCAAATAAGGCATTTAATGGTGTATTTGGTAGGCAGGAAAATAAAAAATGTTTTTGTTTAATTGGTCAATTTTCTTTAAAAAATATTTATTTATAGTAGAAAAACATATTTTTTTAACGATCGTGGTGTTCAAATCAACTTTCATGTAGATCGATTAATTTTATGGGATATCTATTACCTTCCATCAATAACAAGTATATGGTAACCATGATTACCAGGTCTAGGACAGATGAGAAGAATCACCTAACATTTTTTGTTTACGGTCAACACATATTCCGTAAAAATGATAAAAATGACTAACAGAACATACTCCCCCACCCTCCATAGCCCTCCTCCCCACATGTTCCAAAATCCAATCAATATTTTCTACTTACTCACGAAACATAAATAAAAATCACATTTTTTGAAGAAAAACGTATTCTTAGGTCTCAAAGAAATGGTCATGTATGACAAACAAATTCAAAAAATCACATTTTTTGAAGAAAAACATATTCTTAGAGTAGATAGTCTAAAAAAATGGTCATATATGACAAATAATTATTTTTTTTAAGAAAAAAAAGGAAAAATAATGATACATTATAGATCCAATCAAACTACACCAACAAAATTTTTTCTTAGTTTATATATAATATTTACAAAAATAATCAATTCTTGATCAAAGATGGGATTTCTTTTACTCTTCATAATCTTTAATTCTTTATTTTCAACAATGGCCACTAATTTGGAAACTTACATTGTTCAAGTTGAATCTCCAAATAATCAAATTTCTACTCGTAGTACATTATCAACAATGAAATTTAGATAGTTGGTACCATTCATTTTTGCCAACAACTATAGCCAAGATACATCGTATGGTTTACGCGTACTATAATGTGATTAAAGGTTTTGCAGTTGGATGGAGAATTGAAAGAAATGGAGATGAAAAAAAGGATTCATTTCAGCGCGACCTCAAAGGGTGTTGTCTTTGCACACTACTCAAACATTGGATTTTGGAGAGATTCTAACGTTTACTCAAATAGTCAATCGATCATCAGGCACTGTTGAGGTTGAAGGATTCTTGAAATGGAAATCTACCAAGTACTCTGTTAGGAGTCCAATTGCAGCTTTGTTGACTCGAATCTTTTAGAGAAAAAAAATTGATTCCTTTGACAAGACAGAAGGAAACCTATTCAATATGTAATTATGACCACATACTTCTTAAATAATTGTCTGATGATTTTTTTGGTATAGCAAGCATAAGATCAACTATAGGACAGAAGTAGAGATATAACAATGATCTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGTAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAAGCCCTACTGAGGAACGAATGTTGTGAGCAAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAAGGAACTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGAAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTTTTTTGTAGCTAGAACTTTAATCAAAATCAAATAAAAGCCCTACTGGGGAACGAATGTTGGGAGCAAAAAAAATCCAAAATTGTAATCACAACTTTAAAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATTTAGTACAAAAGCTTGGCAGTTTTGCAGGGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAAAACCAGTCTTGGTTGGATCCATGTCATGATTTTTGAAACTGAATAATAAGGGCTGGCGAGCACAAAGTTCTGGCACCCCATGATAGTGTGGGTGTGAAAAAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244586" ref_strand="+" ref_description="SGN-E244586 [cLED-38-N13]">
      <seq>tctctctcacacacacactatcatggcgtgccagaactttgtgctcgccagaccttattattcagtttcaagaatcatgacatggatccaaccaagactggttctgctagtgaaaggaggaacacatcatctcttttgtggcttttcactgcaaaactgccaagcttttgtactagattcatatatcctaagccttcctgttggcgcttttctagagttgtgattacaattctggatttttttttgctcacaacattcgttcctcagtagggcttttatttgattttgattgaagttctagctacagaagagcttgtatcatgtgaaaaaatattggaccaaggagttactgtgattgtagttgaaaagtggtgatagtctacttaatgaaattgcagatcattgtttttnnnnaaaaaaaannaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50385" stop="49378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50085" g_stop="49680" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E244586" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50085" e_stop="49680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGA-TTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</genome_strand>
        <mrna_strand>TCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGATTTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550513" ref_strand="+" ref_description="SGN-E550513 [TUS-6-A22](-)">
      <seq>ctctctctcacacacacactatcatggcgtgccagaactttgtgctcgccagaccttattattcagtttcaagaatcatgacatggatccaaccaagactggttctgctagtgaaaggaggaacacatcatctcttttgtggcttttcactgcaaaactgccaagcttttgtactagattcatatatcctaagccttcctgttggcgcttttctagagttgtgattacaattctggatttttttttgctcacaacattcgttcctcagtaggggttttatttgattttgattgaagttctagctacagaagagcttgtatcatgtgaaaaaatgaaggaccaaggagttactgtgatgtagtgaaaagtggtgatagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="50386" stop="49406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50086" g_stop="49705" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E550513" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50086" e_stop="49705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGA-TTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTA</genome_strand>
        <mrna_strand>CTCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGATTTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGGTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATGAAGGACCAAGGAGTTACTGTGA-TGTAG-TGAAAAGTGGTGATAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224381" ref_strand="+" ref_description="SGN-E224381 [cLEL-27-F2](-)">
      <seq>caaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgttanccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51368" stop="49977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="154" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50726" g_stop="50648" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="233" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50400" g_stop="50274" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="360" r_length="127" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E224381" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50648"/>
          <exon e_start="50400" e_stop="50274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTTANCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224881" ref_strand="+" ref_description="SGN-E224881 [cLEL-27-F2](-)">
      <seq>aaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttacctaaagcacagaaaaggatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="51370" stop="49977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="97" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50726" g_stop="50648" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50400" g_stop="50274" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="368" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E224881" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50648"/>
          <exon e_start="50400" e_stop="50274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</genome_strand>
        <mrna_strand>CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGGATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368681" ref_strand="+" ref_description="SGN-E368681 [TUS-22-N6]">
      <seq>tattgtaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagcattgcccaatagaggatgcccgtgctgctatgatgctttaccctaaagcacagaaaagaatgggaaaagagcatcaaggactttgcaagactgaaggagaaacagaaaaagcgtaaaccaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54646" stop="49984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54346" g_stop="54260" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="172" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52396" g_stop="52278" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="291" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="380" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="445" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50726" g_stop="50648" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="524" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50400" g_stop="50284" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="642" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E368681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54346" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52396" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50648"/>
          <exon e_start="50400" e_stop="50284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCAGTTAGTTCTATGCTTTTTAATGACTTCATTGTGCTCTTTTCCTTTCGTTTCTAGTAGTTTCTCCTTCTAAACAGTGGAATCCTTACTGTATGTGCTGTAGTATACTGTTATGGACCTCCAAGTATTATCTTGTGTTTGAATTTGGCTTTACAGGCTGAATCTAAAAAAGAATTCAATCTTGTAGCAGCATGACAGTTGATTATATCCTAATGAATTCTAACATGTATCACATCTGCATATTTTGCAGATAGAGGATGCCCGTGCTGCTATGATGCTTTA-CCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAA</genome_strand>
        <mrna_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA.......................................................................................................................................................................................................................................................ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275746" ref_strand="+" ref_description="SGN-E275746 [cLEN-18-E11]">
      <seq>aatcctaattccatattatttaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgagaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtgttagacctcatcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcagtcgtgcactacggaaccttgctactgaagtccttggagtggagatacaaaatggagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54726" stop="50355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54426" g_stop="54408" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54338" g_stop="54260" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="98" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="183" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52862" i_stop="52387" i_length="476">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52386" g_stop="52278" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="292" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="381" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="446" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50726" g_stop="50655" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="518" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E275746" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54426" e_stop="54408"/>
          <exon e_start="54338" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52386" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCA</genome_strand>
        <mrna_strand>AATCCTAATTCCATATTAT.....................................................................TTAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGAGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTGTTAGACCTCATCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723355" ref_strand="+" ref_description="SGN-E723355 [FC20BA05]">
      <seq>cgatgaggggcattttaggtccttcaacccttcacatgttgggagcttaaagcggatgttaaagtaattgagccaccacgcggagaggaagacaaaaatggcggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcaaaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttctaagggaaggacgcaatcgtgcactacggaaccttgctactgaagtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="55023" stop="50383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54723" g_stop="54558" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54480" g_stop="54408" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="239" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54338" g_stop="54260" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="318" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="403" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52396" g_stop="52278" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="522" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="676" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50726" g_stop="50683" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="720" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E723355" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54723" e_stop="54558"/>
          <exon e_start="54480" e_stop="54408"/>
          <exon e_start="54338" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52396" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCC</genome_strand>
        <mrna_strand>CGATGAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAAAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAATCGTGCACTACGGAACCTTGCTACTGAAGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345742" ref_strand="+" ref_description="SGN-E345742 [cTOF-18-L14]">
      <seq>cggatcaattgaaaaaccctaagaaacagtttcagctaaatcccaactgggctcagctccgtcaacaactcaacagcaatggcttccaaaaacaactgtcaaatccttcagaaacagaaaatcctaattccatattaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaattaagcattttctaagggaaggacgcagtcgtgcactacgggaccttgctactgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54922" stop="50384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54622" g_stop="54558" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54480" g_stop="54408" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="138" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54338" g_stop="54260" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="217" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52862" i_stop="52387" i_length="476">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52386" g_stop="52278" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50906" g_stop="50842" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="564" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="50726" g_stop="50684" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="607" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E345742" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54622" e_stop="54558"/>
          <exon e_start="54480" e_stop="54408"/>
          <exon e_start="54338" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52386" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50842"/>
          <exon e_start="50726" e_stop="50684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAAGTATTCTCTCTCTGTTTCTAACCAAGTTTATTTTGTAATTTATTTGTGATTAAGCACTCAATTTCTTTGTTCTGCAGCAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAGGTATATCTCCATTTTTATAATTTTCTTTTTTTTTGGTTCTGAGTTGAGTTTTTTTGGTTGCTATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAGGTAACCTTCGCACCCACCTCCCCACCAAAAAAGAAATTCTTGATTACTTGCAACTTTCAACTTCTAGCTTGTATTTTGGCTGCAATACATTGCTGACATTGGGCTGATAAATTAGGGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTC</genome_strand>
        <mrna_strand>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA.............................................................................CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG.....................................................................GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAAT-TAAGCATTTTCTAAG...................................................................................................................GGAAGGACGCAGTCGTGCACTACGGGACCTTGCTACTGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240931" ref_strand="+" ref_description="SGN-E240931 [cLED-24-E10]">
      <seq>tattgtaggaaagcgcaaaagcaggcccagtgatgattccggagatgctacgcctaatcctcttactccaacttcatcggattcaagtgttacagatgtgatagggatggattgtgaaatggttggcgtaagctctgtgggaaacagaagtgctcttgggcgagtcacactgttaattgcaggtcaaccaatggggaaatgtgatatatgacgaatatgttcgtccagttgaacgtgttgttgacttccgcaccaaaatcagtggtattagacctcagcacttaaagaaagcaaaagatttccgcgttgttcagaaggaggtggcagaactaataaagggacggattcttgttggccatgctctgcgaaatgattttaaggccttgttattaggccatcaaaagcaggatattcgtgacacttctgaatataagcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="54646" stop="50546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54346" g_stop="54260" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52947" g_stop="52863" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="172" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52396" g_stop="52278" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="291" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51068" g_stop="50980" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="380" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50906" g_stop="50846" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="441" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E240931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54346" e_stop="54260"/>
          <exon e_start="52947" e_stop="52863"/>
          <exon e_start="52396" e_stop="52278"/>
          <exon e_start="51068" e_stop="50980"/>
          <exon e_start="50906" e_stop="50846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAGGTGAGTATTAAAAAGGTCTTTTTTTTTGGGTCAGCGTACATTATTTGCTTAGATACACCTTTTATAAAAGATAATAAGAAACTCGTTTAGTTAGGATTTTTATCTACAACACCTGAGTATGTGTGATCTAAATCAAGTTACAATAGATAGTGACTGAAATTGAAGGAATAAGAACGTACAACAGCAATGCTACAATTAGTACTACGGAACGATAAGTGAAACCTATGATGCTCGAACTCTTTAAAAATGTTAGTGGCTGCGTGTTGGATTCTCCAAAGTAGTGTATTTTTGGCAGAAGTCGACGCGGGTGCAACATCAAAGTGAAGAGTCTGCCTAACTTTGAGTGAGTTCTAGTCTGCGTCCTCCATAATCTTCTATATTCTGTATGAGGTTATGTCCTCGGTAAGCTAAAGCTGCACCATGTCCTATTTAATAACCTTTTCCTCAATACTTTTTGGCATAGCACCGACCACTACCTCTCCTGAAACCATCTATAAAGCCAATCTCTCACACCTTCGCATTGAGACATCCGTGCATCTTCTCTAAATATGTCCGAACCATCTTAAATTTGCCTCCTATATCTTGTCCTCCACCCCTCCACCAAGGCCGCTCCCACCTTGTCGTGGATATCTTCATTTCTAATCTTAATTCTCCTTGTATGCCTGCGTATCCATTTTTGCAATTTCCATCTTCTGAACGTGAGGGTTGTTTACTTTCTTTTTATTTTTTAATAAAATACATTCTAGTGTGCTTATAGCAAAAAATACAACTTAATTTTTATAGGATGCACAGTCATCTTTCAGTTCCCATTTAGGTCCATCGTTGTAAGTAATCTGATCATACGAGTAAAAGAGCCCATCATTTGTACATAGCCAATAAATATTTGTCGCGCTTGAAGTGTCTCGTTGTGGATCAAATGCTTGAAAACATGAAATTGGAGGACCATGGTGTAGTTTACAAAAGTAGGCAACATTTGCTCCTTGCAACACAGTCAGTCTAACTACCACTTAGTAGAACTTGCCTTAAATTTCTTGGTGGCATATTTTAGTCACACAAGACTCTGGAAAAGCTTATTTTCAATAAGTTATGAAATGATAACTATACCTAAATTTCTATGTTATTTTAACATTTGCAGGAAATTAGAAAGATTTTATTTTTAACTGGTCACAACATTAAAATACAGTCGAAATCTCACTTTTCTATTCTTATTTAAGCCTCCTCGAGTTCAAGTCTGATTGAGTATTTTTTTTTATTATTAATTGGATAATTATTTTATTACTGTTCAATAATTTAATCGTTAGCTCCATGACAGTGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTGGTATTCAGTCTTACTTTCTCATTTACTTAAATACTGGTGATTTTAAAACATATGTTACTTCACTACATTTGACAAATGGTTTTACTAACAATTGTTTCAGTTGCTTCCCCAGTTTAACTTGATGCTTTTGATTATTAGTTACAAGCTTCTATTGCACTATGATTTTCATAACTAAGCTGTTTATATCCTATAATAAATTCTCTTCTTGCTGTTTTTTTGCCTTCTGAGCATATGCCACACACAGAATTATAAATAATTGTTTGTTTTTATGGGTGCTTGTGAACTTATAGTACACTAATTATTGATGTCGCTATATTAAAGCTTCATCTTGTTTACCTATAAAACATAATTTGCCTTATTTTGATTATTCGGGTACATTCCATTAGTTCTTCTGTGTATTTGAACCTACAATTTTCTTGTAAGCTTGTTTGTTCGTCTTATACATGAACAGTTAAATGGAAACCAGTTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAGGTTGGTTTCACTTCACCCCTTACATTTGAAAAGATACCAACAGAAGGAAAAGTTTTTAGTCTGGTCTCTTGAAAGAATAATGACTACAAAAAAAACTATTCTTGCTAAAGAAGCAGAAAATTGAAAAACATTTCTTTTATTATACTTTAGCATGTTAAGTTGGGTCATCTGAGAAGCAGCGTGGTGTTAATTTAGCACGTTAAGTTGCAGCTGTTTTAGAAGCATTGTGGAATTTTCTCGCTCCTATTCTTCTAATTTTGATGCTTAATGGTTTTCCATTTGGACGGCGAAATGAATGTACTATCACGTGTAGTCAGAATGGAAATTTAAGCTCTTTTAAGAATGTTGACATGAGAAATTCCCATCGGCCATCACAGTGCTCACAGATCATCAACATATTTTAGTAGGTGTTTGTCCATGTTTCTTTGTGAATGAAAAAAAGTAGTTTTTGTTTTCAAAATGAAAAACGATATTTAGAAATTAGAGTTGTGTTACTTTAACTTCATAAAAGAAAAAAGACATTAGAGTTGTGTTTTTTTTAAAATAATTTAGAGTTGTTTTGAATTTTTGCGAGTAATTGGGAGTTAAAAAAGCGAAATTGTTGTTTGTAGTGGAAAAAAGTATAATAATTTCATGGCCAAATGCCTTAGAATTTGATGTTCTGGAATTTTAACTAATTGTTATTAAAGATTTTGAGTCCATCTCATTTTCCTGAAAGAGAGTTCAATGGCTCGTGCACATTCAAGCTACAGAGGTTTGTCCAGAATGCATGAGAGGAAGTTTGGCTAAATGCCCTGAGGGATTCAATATAAGTTTAAAATAAGTAGGGGCTGTGTCCAATGTCCATCAATCTCTAACTAAAGGATAAGTTTGTTTCCATTTCTTTTTGATTAGAAGATTTGTATATAAGAAAATTATATTGCAATCTTTGTTGGACAACATCACTAGTTAATGGTTCAAAGTTGAATAGACTGTCAGTTTATTTCTAATCTGTAGGTTTATATTTTCAATTTGGATTAATTGTTTTTAGCAGTCAGTTTGAAGTTTGACTAGGTGTTAGTTTGACTTCGATCTGGACAAGTATTTATGGACAGTGTAATTCCATTTTTTTGATACTTTCTGCAAGTTATATGCTCAAACCAATATCAAAAACATTTTGTTTGGTTTGTGGTTTGCCCAAGTAATGTGCTCTTCTGATGTCATCTGCAGCAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAGGTATCTGCGCACCTTCTCAGACTTTGCATCTAGAGTACTTTCTATGACTAAATTGGAAATGTTTCCTGTACAGGCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTC</genome_strand>
        <mrna_strand>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG.........................................................................GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59772" stop="58727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59472" g_stop="59027" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59472" e_stop="59027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAA-TTTTTCTAACGTTTGGTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59773" stop="58878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59473" g_stop="59152" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59473" e_stop="59152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59773" stop="58878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59473" g_stop="59183" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59473" e_stop="59183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701613" ref_strand="+" ref_description="SGN-E701613 [FA16BH04]">
      <seq>atttgttttccttcttagaactctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaacttttcaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaagaattattccacctctgtattgtttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76764" stop="80243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77064" g_stop="77364" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="79943" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="849" r_length="548" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E701613" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77064" e_stop="77364"/>
          <exon e_start="79396" e_stop="79943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATT</genome_strand>
        <mrna_strand>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTTCAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAAGAATTATTCCACCTCTGTATTGTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369302" ref_strand="+" ref_description="SGN-E369302 [TUS-25-A10]">
      <seq>actctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76783" stop="80064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77083" g_stop="77364" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="79764" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="651" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E369302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77083" e_stop="77364"/>
          <exon e_start="79396" e_stop="79764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAAC</genome_strand>
        <mrna_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247130" ref_strand="+" ref_description="SGN-E247130 [cLEF-46-E4]">
      <seq>actctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76783" stop="79988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77083" g_stop="77364" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="79688" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="575" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E247130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77083" e_stop="77364"/>
          <exon e_start="79396" e_stop="79688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGA</genome_strand>
        <mrna_strand>ACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703003" ref_strand="+" ref_description="SGN-E703003 [FA20BB10]">
      <seq>ctctcagctatctccttaagtaaaccaaaatagttgattttgttgaattaatcgcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76784" stop="80327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77084" g_stop="77364" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="80027" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="913" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E703003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77084" e_stop="77364"/>
          <exon e_start="79396" e_stop="80027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACT</genome_strand>
        <mrna_strand>CTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336896" ref_strand="+" ref_description="SGN-E336896 [cTOE-5-L5]">
      <seq>gcagatggcaggtgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76837" stop="79878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77137" g_stop="77364" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="79578" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="411" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E336896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77137" e_stop="77364"/>
          <exon e_start="79396" e_stop="79578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGC</genome_strand>
        <mrna_strand>GCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318291" ref_strand="+" ref_description="SGN-E318291 [cTOA-29-N5]">
      <seq>tgggtatagagctgaggatgattacgattatctgttcaagttggtgttaattggagattctggtgtaggaaaatccaatctcctttctcgattctcaagaaacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcatatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactccaagttggggatgatcctactgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76849" stop="80048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77149" g_stop="77364" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="79748" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="569" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E318291" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77149" e_stop="77364"/>
          <exon e_start="79396" e_stop="79748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGT</genome_strand>
        <mrna_strand>TGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCATATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCCAAGTTGGGGATGATCCTACTGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369301" ref_strand="+" ref_description="SGN-E369301 [TUS-25-A10](-)">
      <seq>aacgagttcaatcttgaatcaaagtctactattggtgttgaatttgctacccgtagcattaaggtagatgataagatcgttaaggctcagatttgggatactgctggacaagaaaggtatcgtgcaattacaagtgcatactacagaggggctgtcggtgcattagttgtctacgatatcactcgacatgtcacatttgaaaatgttgagagatggttaaaagaacttcgagaccataccgaccaaaatatagtcataatgctcgttgggaacaaggccgacttacgtcacttgcgtgctgtttcaacagaggatgccaaggcctttgctgaaagagagagtaccttctatatggagacttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="76949" stop="80341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77249" g_stop="77364" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79396" g_stop="80040" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="761" r_length="645" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E369301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77249" e_stop="77364"/>
          <exon e_start="79396" e_stop="80040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTGTTTTTTTTCTCTTTGCTTGTATATTTTCAGCTAATTGGATTGAATCTTGTTTGATCTGGCAATTTCATACTCTTGAAACTTGTGTGTAAGTTGCTAATTTAACTTTCTGAAGTGGGGTTTGTTTCAATTTTAGCTAGAATCTGATAATTAATAAGTTAATAATCTTGCCCCCCAAAAAAAAGTTTTGATTTTTTCGAGTTTCTTTTGGCAAGATTTGAAAAGGATTGGTAGTTTCGTAGCTAAGGGGTGAAGTTCCCTAATTCAGTTACAGATATGTAAAAGCTAGAAGGTGTTGTGTTAGTATGTTATGCTGCCATCTAGATGTTTTGTCTGTGTGGTACTTTGTTTTTGTGAGTTGAGGGTATATCGGAAATAGATTCTCTACCTCAAAGTAGTGGTAAGGTGTGTGTACATTTTATCCGTTCATACCCGTGGGTGGTGGTTGTGGTATTTTGTTTGTGTGTTTATATATCTATCTCTAACGTGTCTCTCTACCCTCACAAAGGTAGGGTTAAGGTTTGCTAACATCATACACTCCCCGGACTCCATACGTGGGATTAGATTTGGTATGTTTTTGTTTTTCTATATATAAGGAGGATGTGAAGGAAATGATTGTTCTGTCTTGCTTGGTATTTTTAGAGATGCTTTCGGTTGTTCACTAGCAATTACAACACTTAGCAGTGATGGATTTTTCCTATGGGTCAATGCCTCCCATTACTGTCTTTTAGGCAACGAGCAAGTGTAGTTATGGATCAAGTTGTAACTGGTAGACCTCAATTTACTTCTAACTTCTTCTAAAAGGTGATCCCTTCTTGTTTTCTTCAAAATTTGTAAATTAGAGGTGAAAACAAATGACATCTGCACAATAAACATCCATAGTTGTGATGGTTCATTGCTCCGGCCAAGAATACGATTGATCTGGCATGGACTACATGTGCCCCTGCTCCCTAGTAGTTAACTGGATAAATTGAGTTGCCGGGCGTTCCTAGTCATTCATAAATCTTTGAGGTTTAAGGCTTCAAATATGGATATCATATAATTAAAGAAAAGGAAAGAAATAGTACCAGAGCGGATAACTAAGGAGTGGAGCAAATGTGGTCCCTAGGGCTTCGGCTAGTGGTAAGAGGGCAGTGCATTGTGTGTGGGTTAGGGGTAGGTCAAAGGTTCAAAGCCTACTGCCGTCAAAAGTGTAGTGCACTGTATTCAATTGGAAAAGGGTAGAGAGGTGGGTCCATTATCCACCGAATTTCAAACGGTGCGCCACTAGCCTCGTGGATTCCTTTTTTAGAATAAAAAGGAACAAAATTTGGCATGTTGGTATTGTTATATTTATATCAAGCTAGCTAGAAAAGTTGGACTTCTACATGTATGATAGTACTAGTATATTAATTATCTCCTAGCTAACATAATCTCATTCAAGTACTAATTAGCCTTTTTAGAAACTTTCTTTTCAGGTGAGACTAGAGTCTAGAGGGCTTTTTTAGAGAATAGGTACTACTTTCCATTACTTATCAAAAAGAAAAAGGAAAATGTCGTGCACTTAATTAATCACGATATTTGACTGTTATCTACTTCATCAGCTTAGGTGCACTTAATTAATCACGATTTTAAGTGGTGGTTCTGTTTCAAATTTTGGACTAGACGCTAGAGTATAGATGCGTATACATGGATGAAAGATGAGCTTCACTCATGTACTCGAAGTAGTTGACTGACTGCCATCCTAAGAGGGGGGGGGGGGGGGTTATCCTTGTATTTCTTCTATTGTGGTTCTCGTAGGTTAGTCTTATATTTCTTGCTTCCCTTCTTTGCCCTTTTTTTGCTTAACCTGCGACTTTATTCTGCCAGCTAACCTGATTCCTGATAAGTTCATTTTCGGGTTTGATTTTTGATTTCTAGTATGGAACTTATGTTTGAGCTCTGTTAGATCTTTGGTTTGAAATCTTTTTGGTTCTACTTTGTCATGGTAAGATTGGCACCTTATTGAAGTGGAGACTAATTAAAACTTCAATTTCCCATGTCGGACAACAGGTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</genome_strand>
        <mrna_strand>AACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226645" ref_strand="+" ref_description="SGN-E226645 [cLEL-26-B7](-)">
      <seq>acttcagcacttgaatccttgaacgttgagaatgcgtttacagaagtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79337" stop="80362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79637" g_stop="80061" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="442"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E226645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79637" e_stop="80061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</genome_strand>
        <mrna_strand>ACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226792" ref_strand="+" ref_description="SGN-E226792 [cLEL-26-B7](-)">
      <seq>gtactgacagagatatacagggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtgaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79382" stop="80362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79682" g_stop="80061" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E226792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79682" e_stop="80061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</genome_strand>
        <mrna_strand>GTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240449" ref_strand="-" ref_description="SGN-E240449 [cLED-21-E23]">
      <seq>gggtggtctgtcggaaagcactcgaagttggggatgatcctactgcgttgccgaaggggcaaactataaatgttggcaaggatgatgtttcagctgtaaaaaaagttggttgctgctctgtgtaagctaaaaaaatcaagaaatcggtgaagttaaactttcaaatggcttctcctatagttgcattgagtattctcagttttgaatatcttaggaattattccacctctgtattgtttcattaacttacctttagtttgtactttgtaccctattttgctagtcttttgactctttgtaaaagagttttactattatttatatacttttacattatattattattttgtatgtttatggcatcttatgagtttaaataaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="79401" stop="80387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79701" g_stop="80086" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="397"/>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E240449" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240449" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79701" e_stop="80086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</genome_strand>
        <mrna_strand>GGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTAAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321247" ref_strand="+" ref_description="SGN-E321247 [cTOB-23-G7]">
      <seq>ttgaaagaaatactagacatcagaaccttcctaacatgagagttctgccagaagacggagtggcaatgctggatgtttcgggctaccatgaagttaacaatcccattgatcagcacagagatatgcgtttagacgtagatcacatgtcctacgaggagcttcttgcactgggggagcagattggcaatgtaacaactggattgtcagatgaaataatcgttaaccgcttgaaaacaagatcattttcgccccccgttattccttgcaccctggaaactgctgcatgtttggatcacgaagctgatttctgtgtcatatgccagactgactacaacaagcaagaaactataggaactcttgattgcgggcacgaatatcatgcagaatgcgtaaagaagtggttggttgtgaagaacacttgccctatctgcaaatccaccggattgtcaatagaaagaaaagatttgtgaaaacagggagttggttggttggtggatgaataattataagagtgggacattttgntctcttgttaaatatttgttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="83576" stop="80798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83276" g_stop="83221" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83220" i_stop="83092" i_length="129">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83091" g_stop="82993" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="155" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82992" i_stop="82816" i_length="177">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82815" g_stop="82648" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="323" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82647" i_stop="81324" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81323" g_stop="81098" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="549" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E321247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83276" e_stop="83221"/>
          <exon e_start="83091" e_stop="82993"/>
          <exon e_start="82815" e_stop="82648"/>
          <exon e_start="81323" e_stop="81098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGACGTAAACTTTTCTCTGTTTGACCATATCTCGTTACTTCCTTTGTCATTATTATTGTCTAATTGATGCATTTGTTTGATGTAATAGAATTGAATTCTAATGGGTTTATCTCTTCATGGTTGCTATATGAAGGGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAGGTGAGCAATAGGTTTCTTGATTATATTGCTGTCTCAGATTTGTCTGATGGTTAATCAGTACTTGTGAAGTCTATTTTGTTTGTATGTTATGTATTATTTCGGAGTTATTGTCTGCTCTGCAATTTGTTTGCATAACATCTATAATAAAATTTCTGCAACTTTCAAATTCTATTTCAGGAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAGGTATTAACACTAAATTATACTTTAAGTTGGATTAGATTTGCCTGTGACTTTTGCAGGGATCACTCTGGGGATGGCTCTACTTCAGTCTCCTTTTCTCCCGTCCATTTCATTTTAGGTGCTGATTAAGTACTCTAACAAAGACAAATCAGATGGGTGTAAGCTCTTGCTTAAACAATCACATTAGTAGGTTTTAGTTTGTTACTCCCCCTGTTTCAGTTTGTTTGCCTTTTCTTTTAAGTCCGTTTAAAAAAGAATGCCTGCTCCCTTTTCTGATAATTCTTTAATTCTAACTTTCCACATGACATATTTTAGACCACAAGATTAAAGGGCATTTTGGTACATTTTATATATCTTTAGTTTAAGACAACAAGATTCAAAAGTTTTCTTTTTTCTTAAACTCCGTGTCAAGCCAAAACCAGATAAGTAGATTGAAACGAGGGAGTGTTAAACTTCATTCCAAATGAACTTCCGAGGAAATGTTTTTGTATCTACTAGTTACTCTTGTTTTCAGTATCTTTGATGAAGATTTTCTTGTTTTAACTCTTTGATAATCGTCAATCTCTCCTATTCACACTTTCCTTTCTCAAAAATTGTTTTTTATCTCTCTTTTTCTGTGGTTAAATAAATTGCTTTTGATGCTTCATATAATTAGTCAAGTTTGGGAGACAATGTATTAAGCAGAAATATGAAGTTGGCACAATTGTCCCCTCATTATTCTTTTATTCTTCCTCCTAATAAAGAATATAATAATTTTACAAATCAATCCACTTGGAGAACTTTTGCATTTGGAATTGATTTCTTTTTCTTTTCCTATATTTGTTGTAACTCTAGAAGTGACGGTATAAAATGTTATGGAGAAAGAATAGGTTGACATCTAAGTATAAGAACCATGCATTCTCTTGGGTGGTTGTATCTATTTAAGCAATAGCATAGTTTAGTCTGTCAGCTGAATTATTGACTAACAGTTTACTATTGCATTGTTTCGAAATAAACTGAGGAGGATGCTTTGTACTCCTTCCTCAATCTTTATAAGCTTAACAATCATCACAGTAGGATGCCGTCAATTATTTCTGGATTTCCACCAGGCAAAGTATTGCCTCGGCTACTAAGATGTTTCTGTCCATCTTCTTATTTTTATGTTCACATAGAATGCTGTCTATCGTAATTTATATTGTCTGGATTTGTAATGCATGATTATTTTCCAATTATGCGCCATTAATGCCTTGCTGTGCTTTCCTATGGAGCTACTTTTCCTTGTTTTCTTTCTTTTAGTTATCCTTGCATCTCTGATGGCTTGCAATGTATATTTTGCCTTCAATTTCAGACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</genome_strand>
        <mrna_strand>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC.................................................................................................................................GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG.................................................................................................................................................................................GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGNTCTCTTGTTAAATATTTGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316068" ref_strand="+" ref_description="SGN-E316068 [cTOA-23-B9]">
      <seq>ttccattgaaacctctcttcattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacnagttctcacaacatctttggaatgaatttcagatacggaagggacaatcattatatggacgatgtcagaggctcatataagagaaagatgctgaaggaattnctgcaaatcttcatatcatcatgctttggcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87032" stop="84010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86732" g_stop="86652" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86395" g_stop="86313" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84854" g_stop="84310" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="706" r_length="543" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E316068" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86732" e_stop="86652"/>
          <exon e_start="86395" e_stop="86313"/>
          <exon e_start="84854" e_stop="84310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAA-TTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</genome_strand>
        <mrna_strand>TTCCATTGAAACCTCTCTTC-ATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACNAGTTCTCACAACATCTTTGGAATGAATTTCAGA-TACGGAAGGGACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAG-ATGCTGAAGGAATTNCTGCAAATCTTC-ATATCATCATGCTTTGGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321913" ref_strand="+" ref_description="SGN-E321913 [cTOB-29-C13]">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacgggccacttgatcggcttcatacaagttctcacaacatctttggaatgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87108" stop="84119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86808" g_stop="86652" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86395" g_stop="86313" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84854" g_stop="84418" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="677" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E321913" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86808" e_stop="86652"/>
          <exon e_start="86395" e_stop="86313"/>
          <exon e_start="84854" e_stop="84418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTC</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322635" ref_strand="+" ref_description="SGN-E322635 [cTOB-26-O7]">
      <seq>ttacaagaaaaataacgtggccaattaataggagaatcaaacagccaattagcagttaaccgtaaaatttccacttttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcagcaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtagtaccagctcccgtaaatgctggtaatatatatttgcaccatgtatcagatcatcaagagggtcccttaacgtatggcttgacacagttcaatgggattcaacatcagcatcctgccagcaatcctgacctagctatttctgcttcaaatcattacaatccttacatggctgttccatccgcttctggagatttccctattccagtaaatcacggggcacttgatcggctttcatacagtctcacacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87108" stop="84129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86808" g_stop="86652" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86395" g_stop="86313" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84854" g_stop="84429" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="664" r_length="424" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E322635" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86808" e_stop="86652"/>
          <exon e_start="86395" e_stop="86313"/>
          <exon e_start="84854" e_stop="84429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGC-TTCATACAAGTTCTCACAACATCTTT</genome_strand>
        <mrna_strand>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGGCACTTGATCGGCTTTCATAC-AG-TCTCAC-ACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316066" ref_strand="+" ref_description="SGN-E316066 [cTOA-23-B5]">
      <seq>ttccattgaaacctctcttcaattatcgctttgccctttttgcttctttgatccatcgatcgtctgatcaacctttaattggtgtttttaaactgagcatttttgtgccttttatgtttaaaggcaacaatcaaggaagaagttgatatttggatgataaaaaggaatcaccccacaacattgtaaccacgaagataggctaaaggagcatgtcacacagtaatcgcataattgatatggaagcagatcagcaaggtcaagagttttttcattcaccaccttgcatgttttacgggagcatagcggctttaccacagcctactgtccatgcagtaataccagctcccgtaaatgctggcaatatatatttgcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87032" stop="84343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86732" g_stop="86652" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86395" g_stop="86313" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="164" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84854" g_stop="84643" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="376" r_length="212" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E316066" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86732" e_stop="86652"/>
          <exon e_start="86395" e_stop="86313"/>
          <exon e_start="84854" e_stop="84643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTGGTTAGTTTTTCATTGTATAATCGGACCCAATTTATCAAAGTTTCAAATATAATGTTTAATTTTGTGAATTTGGTAATGTGTAGCTATTTCTTGTTAATCTTGTTTTAAGCATGCATAGGCTATGGCAGGAAGCAATAATTTGTGGGGTTTCTTGTTGATTTTTAGTTTGATGATTATTGATCGCCATTCTGGTATCTGGGTTTTTTTTTTTCGCCTAAAAGATTTTTTTTTTTTTTTGGTTTTGTGACTTGTGTAGGTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAGGTGAGGCTTCGGTTCTGCTGTATGTTTTCTTTTTCTCATCCATGAATTGCATAAGATTGTGTATCAGTTATTTATGTTACGTTGACCTTAACGATACTGGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCTCACTTCCCTGCCTGAATATCTACCACAAGAATGTGAATCTCTCTATCTTCAGTGATATGGTGTTAAAGCTCTCTGACAGAACTGATATCCTACTTGATTTGTGGGATACATGAAGTTTAGATGGTTTGGCATCTTGAGAGATACCCTTCATGACTAGTGACTTCGCCAATGATCGGTTAAGGTGATTCTGAATGCAGAAAGAAGAGCTGGCTAAGTCTCCCCACATCATATTTATCTGGTTCATTATATTTACCACATGTAACTACTATAAGAAAAACATTTATGAGTTTTGTGGTTTTATTTTTCATTAGTGTTTTTATTGAGGTGATGATATGTGTTACCCAAGCTCAATTTTTCTGAATCAAAGATGTAATTCCTAAAGTTCTTGAATGAGAACTACTTAAGTTCTAGGTCAATATTGAACTTCACTTATTGGGATGAACATGGAGAAAGATATTGACATAAGCATGCATTGATAGATGTCCATTTGCATACAAAGTGATTATCAGCTAGCCATCTATCAAGTTTATGCAATTTCTTAGTCAATGATGTTACTAGGCTGCAGTATGTATTATAGCTTGTTCTCCTCCAAGCAGGAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCA</genome_strand>
        <mrna_strand>TTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG................................................................................................................................................................................................................................................................GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCACCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAATACCAGCTCCCGTAAATGCTGGCAATATATATTTGCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548642" ref_strand="+" ref_description="SGN-E548642 [TUS-63-B9]">
      <seq>ggaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttgggtaaggtttgagtactctctacccttcccagtttgtttattatcgttattgttgttctcatgtaatttctgggtagtgttttttcatgagcatcaaacatttgaatgaaagctgtgtaatttgtcttgcctcctctggtaaccaaacatgacataagttaatctcgaagtcttaatgagggttggtgttgtttttaaaaaacacacaactaaaatcaagattttatttggtgtgttcccaacttgaaaatttgcatccggggtttgtcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="86514" stop="85151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86214" g_stop="85451" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E548642" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86214" e_stop="85451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCC-GGGTTTGTCAATCT</genome_strand>
        <mrna_strand>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTTCCCAGTTTGTTTATT-ATCGTTATTGTTGTTCTCATGTAATTTCTGGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAGCTGTGTAATTTGTCTTGCCTCCTCTGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTTAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGGTTTGTCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300990" ref_strand="+" ref_description="SGN-E300990 [cLEW-8-P2]">
      <seq>gaagattatgttcttttatgtgtcttgcttgggtgtatgcctgtgtagtttgcttttccttttctggtgtttgggaaataatcaactcaattggagtgttttgatttatatgtgtgtttatgcatcctgttactaagttggcgagagagaggtgattagatagaacatgacacagtttcagcttaccgaggacatgataggagagtgtggaggacatggattatgacagaaggttggtaggtagcagtgtgctgtcttgttgtccgtacatattagtagttgtagtattgctcctgtagtttcttgttcttccacttctttactgtttgttgatttcttgtatctcaattattgttttgttttgttgtagtttttgttctgtttcgatatgttgtttcttgtactttcgttacttctttcgttggactgcattggactttttccattgagacgaggatctatcaggaagaacctctctatctcttaggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="-" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="86513" stop="85423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86213" g_stop="85724" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="-" ref_id="SGN-E300990" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86213" e_stop="85724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTG--TATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGG</genome_strand>
        <mrna_strand>GAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTGTAGTTTGCTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAGTGTTTTGATTTATATGTGTGTTTATGCATCCTGTTACTAAGTTGGCGAGAGAGAGGTGATTAGATAGAACATGACACAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGTGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTTCGTTACTTCTTTCGTTGGACTGCATTGGACTTTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTCTCTATCTCTTAGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277702" ref_strand="+" ref_description="SGN-E277702 [cLEL-5-M1](-)">
      <seq>agcaatactacaactactaatatgtacggacagcaagtcagcacactgctacctaccaaccttctgtcataatccatgtcctccacactctcctatcatgtcctcggtaagctgaaactgtgtcatgttctatctaatcacctctctctcgccaacttagtaacaggatgcataaacacacatataaatcaaaacactccaattgagttgattatttcccaaacaccagactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0149G24-krhRA/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0149G24.1" temp_strand="+" temp_description="C12HBa0149G24.1  AC217246.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0149G24 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85624" stop="86451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85924" g_stop="86158" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0149G24.1" gen_strand="+" ref_id="SGN-E277702" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0149G24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85924" e_stop="86158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATACTACAACTACTAATATGTACGGACAACAAGACAGCGCACTGCTACCTACCAACCTTCTGTCATAATCCATGTCCTCCACACTCTCCTATCATGTCCTCGGTAAGCTGAAACTGCGTCATGTCCTATCTAATCACCTCTCTCAAGCCAACTTAGTAACAGGATGCAT--ACACACATATAAATCAAAACATTCCAATTGAGTTGATTATTTCCCAAACACCAGAAAAGGAA</genome_strand>
        <mrna_strand>AGCAATACTACAACTACTAATATGTACGGACAGCAAGTCAGCACACTGCTACCTACCAACCTTCTGTCATAATCCATGTCCTCCACACTCTCCTATCATGTCCTCGGTAAGCTGAAACTGTGTCATGTTCTATCTAATCACCTCTCTCTCGCCAACTTAGTAACAGGATGCATAAACACACATATAAATCAAAACACTCCAATTGAGTTGATTATTTCCCAAACACCAGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>94</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6374" PGL_stop="16512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6374" e_stop="7004"/>
            <exon e_start="9111" e_stop="9188"/>
            <exon e_start="9866" e_stop="9907"/>
            <exon e_start="9994" e_stop="10099"/>
            <exon e_start="12707" e_stop="12771"/>
            <exon e_start="14265" e_stop="14303"/>
            <exon e_start="14381" e_stop="14485"/>
            <exon e_start="14590" e_stop="14677"/>
            <exon e_start="14951" e_stop="14997"/>
            <exon e_start="16180" e_stop="16512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6374" e_stop="7004" e_length="631"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="7005" i_stop="9110" i_length="2106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9111" e_stop="9188" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.994">
            <gDNA_intron_boundary i_start="9189" i_stop="9865" i_length="677"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9866" e_stop="9907" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9908" i_stop="9993" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9994" e_stop="10099" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="10100" i_stop="12706" i_length="2607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12707" e_stop="12771" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.985">
            <gDNA_intron_boundary i_start="12772" i_stop="14264" i_length="1493"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="14265" e_stop="14303" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14304" i_stop="14380" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14381" e_stop="14485" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="14486" i_stop="14589" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14590" e_stop="14677" e_length="88"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14678" i_stop="14950" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14951" e_stop="14997" e_length="47"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14998" i_stop="16179" i_length="1182"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16180" e_stop="16512" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6374" stop="6851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6388" stop="6848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6403" stop="6760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6407" stop="6853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6408" stop="6846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6412" stop="6964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6423" stop="6904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6426" stop="6901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6960" stop="7004"/>
              <exon start="9111" stop="9188"/>
              <exon start="9866" stop="9907"/>
              <exon start="9994" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10036" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
              <exon start="16180" stop="16505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10036" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
              <exon start="16180" stop="16500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10036" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
              <exon start="16180" stop="16222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10036" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10036" stop="10099"/>
              <exon start="12707" stop="12771"/>
              <exon start="14265" stop="14303"/>
              <exon start="14381" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14403" stop="14485"/>
              <exon start="14590" stop="14677"/>
              <exon start="14951" stop="14997"/>
              <exon start="16180" stop="16512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCTCTCTTCCCTAAACCCTCATTACATCTTGCAAACAGAACTACTATCAGTCCACCTTTCACCATTGTAAGAGCTCCAATGGCAGCCTTCAAACTACTCTACCAAGCTCGTCGTCACTGTTCATACAGAAGCCCATCTCACTTTTCTCCTACTTTCCGTTCTCATTTGCACAGATTTCTCTCTTCCTCATCATCATCAGAAAACCCGAATTCGAATAACCCAAGTTCAATTCAACCCGTTTCCTACACCCCTAAGAACCCGCCAGAGAGTAGTAGCCGACCCGAATCAAATAACCCAGATGGGGTTAAAGCGGATGGTGGGTTGTGGACCCGGGAGGATCTGCGGTACTTGAAGGATACCCCGAAAATAGCTCCGATTTCTTATCCGACAAGGGTAGCGCCGTTACCGGAGGATTTGCCGGAAGAGGAGAAAGGGAAAATGGAAGGTATGGGTGATGAGATGGAGAGAGAGAGGAGAAGAATCGAGGCGCAAAAACGGGCGGCAATGAGGAGAGTTATGAATGCTGAAGAGGAAATGATTTCGTTTCCAACATTGATTAATGTGAAGAGTGATGAAAAGAAGAAAAAAGCTGTTTATGATCTTAAAGAGGCCATTCGGCTTGTAAAG : GCTAATGCCAAGAAGAAATTTGATGAAACTCTGGAAGCTCATGTTGTTTTGACTCCTGATATGCGTCGAAGTGATCTG : AAACTTGAAGGTACAGTGGCTGTTCCTCATGGGTTTGGAAAG : GTATATCGGATTGCTGTTTTTGCTGAAGGAGCTGCTGCTGATGAAGCCCGAGAAGCAGGGGCTGATGTTGTTGGTGGTTTGGAGCTCATAGAGAACATCAAGAGTG : GAAATGTGAAGATTGATTTTGACAAATGTTTTTCCACTCATGCAATGATGCCGAACTTGAGACAG : ATTGCGAAGTACTTGAGGCAGTTGATGCCAGATACTAAG : AAAGGTACTGTTACCAAAGATATAACAAAAGCAGTGAAAGAAGCTAAGCGAGGTGTACCGTTCAAAAAAGATAAAACTGCAATTGTGCATGTAGGAATTGGGAAG : GTAAGTTTTCAAGAAGAGGCATTGTGTGAAAACATTGGTGCATTTGTACATGAACTTTTGCGTCAGAAGCCTGCTGGTCTAAAAAAGA : GCTCAAAATATGCTGGTTATGTGAATACAGTCCATCTCTGCAGTACG : ATGGGTCCATCATTTCCTGTTACAATACAGTCGTTATCGATTGCAGCAGACCGCCATGCAAGGAAGTATGTTCAATGATAGTATTTGAATAGAAGATCCAATTTTAACTTGATACCCTCTCTTAATAGATCCAATTTTAACTTGGTACTATGTTGTACTCATTTGTTTAAATTTCTTGATTTTCCCACATTAGAAAAAAGGTGTTTCCTAGTTATTTTTGTTTCTTCCCCTTTACTGTAATGATCTATGCCCAGCCCTCTGCTTGAAACCCCTTTTTAACTCAAAATTCACTACTGTTGCTTCACATTTTTATTGTTCTGTCAGAGAAAATAA</gDNA_template>
            <first_frame> L  F  S  L  P  *  T  L  I  T  S  C  K  Q  N  Y  Y  Q  S  T  F  H  H  C  K  S  S  N  G  S  L  Q  T  T  L  P  S  S  S  S  L  F  I  Q  K  P  I  S  L  F  S  Y  F  P  F  S  F  A  Q  I  S  L  F  L  I  I  I  R  K  P  E  F  E  *  P  K  F  N  S  T  R  F  L  H  P  *  E  P  A  R  E  *  *  P  T  R  I  K  *  P  R  W  G  *  S  G  W  W  V  V  D  P  G  G  S  A  V  L  E  G  Y  P  E  N  S  S  D  F  L  S  D  K  G  S  A  V  T  G  G  F  A  G  R  G  E  R  E  N  G  R  Y  G  *  *  D  G  E  R  E  E  K  N  R  G  A  K  T  G  G  N  E  E  S  Y  E  C  *  R  G  N  D  F  V  S  N  I  D  *  C  E  E  *  *  K  E  E  K  S  C  L  *  S  *  R  G  H  S  A  C  K   : G  *  C  Q  E  E  I  *  *  N  S  G  S  S  C  C  F  D  S  *  Y  A  S  K  *  S   : E  T  *  R  Y  S  G  C  S  S  W  V  W  K   : G  I  S  D  C  C  F  C  *  R  S  C  C  *  *  S  P  R  S  R  G  *  C  C  W  W  F  G  A  H  R  E  H  Q  E  W :   K  C  E  D  *  F  *  Q  M  F  F  H  S  C  N  D  A  E  L  E  T   : D  C  E  V  L  E  A  V  D  A  R  Y  *   : E  R  Y  C  Y  Q  R  Y  N  K  S  S  E  R  S  *  A  R  C  T  V  Q  K  R  *  N  C  N  C  A  C  R  N  W  E   : G  K  F  S  R  R  G  I  V  *  K  H  W  C  I  C  T  *  T  F  A  S  E  A  C  W  S  K  K  E :   L  K  I  C  W  L  C  E  Y  S  P  S  L  Q  Y   : D  G  S  I  I  S  C  Y  N  T  V  V  I  D  C  S  R  P  P  C  K  E  V  C  S  M  I  V  F  E  *  K  I  Q  F  *  L  D  T  L  S  *  *  I  Q  F  *  L  G  T  M  L  Y  S  F  V  *  I  S  *  F  S  H  I  R  K  K  V  F  P  S  Y  F  C  F  F  P  F  T  V  M  I  Y  A  Q  P  S  A  *  N  P  F  L  T  Q  N  S  L  L  L  L  H  I  F  I  V  L  S  E  K  I  </first_frame>
            <second_frame>  S  S  L  F  P  K  P  S  L  H  L  A  N  R  T  T  I  S  P  P  F  T  I  V  R  A  P  M  A  A  F  K  L  L  Y  Q  A  R  R  H  C  S  Y  R  S  P  S  H  F  S  P  T  F  R  S  H  L  H  R  F  L  S  S  S  S  S  S  E  N  P  N  S  N  N  P  S  S  I  Q  P  V  S  Y  T  P  K  N  P  P  E  S  S  S  R  P  E  S  N  N  P  D  G  V  K  A  D  G  G  L  W  T  R  E  D  L  R  Y  L  K  D  T  P  K  I  A  P  I  S  Y  P  T  R  V  A  P  L  P  E  D  L  P  E  E  E  K  G  K  M  E  G  M  G  D  E  M  E  R  E  R  R  R  I  E  A  Q  K  R  A  A  M  R  R  V  M  N  A  E  E  E  M  I  S  F  P  T  L  I  N  V  K  S  D  E  K  K  K  K  A  V  Y  D  L  K  E  A  I  R  L  V  K  :  A  N  A  K  K  K  F  D  E  T  L  E  A  H  V  V  L  T  P  D  M  R  R  S  D  L  :  K  L  E  G  T  V  A  V  P  H  G  F  G  K  :  V  Y  R  I  A  V  F  A  E  G  A  A  A  D  E  A  R  E  A  G  A  D  V  V  G  G  L  E  L  I  E  N  I  K  S   : G  N  V  K  I  D  F  D  K  C  F  S  T  H  A  M  M  P  N  L  R  Q  :  I  A  K  Y  L  R  Q  L  M  P  D  T  K  :  K  G  T  V  T  K  D  I  T  K  A  V  K  E  A  K  R  G  V  P  F  K  K  D  K  T  A  I  V  H  V  G  I  G  K  :  V  S  F  Q  E  E  A  L  C  E  N  I  G  A  F  V  H  E  L  L  R  Q  K  P  A  G  L  K  K   : S  S  K  Y  A  G  Y  V  N  T  V  H  L  C  S  T  :  M  G  P  S  F  P  V  T  I  Q  S  L  S  I  A  A  D  R  H  A  R  K  Y  V  Q  *  *  Y  L  N  R  R  S  N  F  N  L  I  P  S  L  N  R  S  N  F  N  L  V  L  C  C  T  H  L  F  K  F  L  D  F  P  T  L  E  K  R  C  F  L  V  I  F  V  S  S  P  L  L  *  *  S  M  P  S  P  L  L  E  T  P  F  *  L  K  I  H  Y  C  C  F  T  F  L  L  F  C  Q  R  K  * </second_frame>
            <third_frame>   L  L  S  S  L  N  P  H  Y  I  L  Q  T  E  L  L  S  V  H  L  S  P  L  *  E  L  Q  W  Q  P  S  N  Y  S  T  K  L  V  V  T  V  H  T  E  A  H  L  T  F  L  L  L  S  V  L  I  C  T  D  F  S  L  P  H  H  H  Q  K  T  R  I  R  I  T  Q  V  Q  F  N  P  F  P  T  P  L  R  T  R  Q  R  V  V  A  D  P  N  Q  I  T  Q  M  G  L  K  R  M  V  G  C  G  P  G  R  I  C  G  T  *  R  I  P  R  K  *  L  R  F  L  I  R  Q  G  *  R  R  Y  R  R  I  C  R  K  R  R  K  G  K  W  K  V  W  V  M  R  W  R  E  R  G  E  E  S  R  R  K  N  G  R  Q  *  G  E  L  *  M  L  K  R  K  *  F  R  F  Q  H  *  L  M  *  R  V  M  K  R  R  K  K  L  F  M  I  L  K  R  P  F  G  L  *  R :   L  M  P  R  R  N  L  M  K  L  W  K  L  M  L  F  *  L  L  I  C  V  E  V  I  * :   N  L  K  V  Q  W  L  F  L  M  G  L  E  R :   Y  I  G  L  L  F  L  L  K  E  L  L  L  M  K  P  E  K  Q  G  L  M  L  L  V  V  W  S  S  *  R  T  S  R  V  :  E  M  *  R  L  I  L  T  N  V  F  P  L  M  Q  *  C  R  T  *  D  R :   L  R  S  T  *  G  S  *  C  Q  I  L  R :   K  V  L  L  P  K  I  *  Q  K  Q  *  K  K  L  S  E  V  Y  R  S  K  K  I  K  L  Q  L  C  M  *  E  L  G  R :   *  V  F  K  K  R  H  C  V  K  T  L  V  H  L  Y  M  N  F  C  V  R  S  L  L  V  *  K  R  :  A  Q  N  M  L  V  M  *  I  Q  S  I  S  A  V  R :   W  V  H  H  F  L  L  Q  Y  S  R  Y  R  L  Q  Q  T  A  M  Q  G  S  M  F  N  D  S  I  *  I  E  D  P  I  L  T  *  Y  P  L  L  I  D  P  I  L  T  W  Y  Y  V  V  L  I  C  L  N  F  L  I  F  P  H  *  K  K  G  V  S  *  L  F  L  F  L  P  L  Y  C  N  D  L  C  P  A  L  C  L  K  P  L  F  N  S  K  F  T  T  V  A  S  H  F  Y  C  S  V  R  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6375" stop="7004"/>
                    <exon start="9111" stop="9188"/>
                    <exon start="9866" stop="9907"/>
                    <exon start="9994" stop="10099"/>
                    <exon start="12707" stop="12771"/>
                    <exon start="14265" stop="14303"/>
                    <exon start="14381" stop="14485"/>
                    <exon start="14590" stop="14677"/>
                    <exon start="14951" stop="14997"/>
                    <exon start="16180" stop="16257"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLFPKPSLHLANRTTISPPFTIVRAPMAAFKLLYQARRHCSYRSPSHFSPTFRSHLHRFLSSSSSSENPNSNNPSSIQPVSYTPKNPPESSSRPESNNPDGVKADGGLWTREDLRYLKDTPKIAPISYPTRVAPLPEDLPEEEKGKMEGMGDEMERERRRIEAQKRAAMRRVMNAEEEMISFPTLINVKSDEKKKKAVYDLKEAIRLVKANAKKKFDETLEAHVVLTPDMRRSDLKLEGTVAVPHGFGKVYRIAVFAEGAAADEAREAGADVVGGLELIENIKSGNVKIDFDKCFSTHAMMPNLRQIAKYLRQLMPDTKKGTVTKDITKAVKEAKRGVPFKKDKTAIVHVGIGKVSFQEEALCENIGAFVHELLRQKPAGLKKSSKYAGYVNTVHLCSTMGPSFPVTIQSLSIAADRHARKYVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13360" e_stop="14139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="13360" e_stop="14139" e_length="780"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13360" stop="13780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13362" stop="14139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13362" stop="14128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTGATATCAAATAAGACGGGTTCCTCTTTTTAAAAATTCTCTCAGGCACAGTCCCTTGATTTTTCTCTCTCCTACTTAAGAGGGGAGAATATCCTTTCCGGCTTGCTGCCGGACACATCATTTCTTTGCTATGCTTTTGCTTCCTTTTTGCAAGCTAACACCTTTGTGGAAGCAGAACAAAGCGACGGAAGAAAGTGAAAATTAGAGGAAAAACAGAGACTTTTTTCTCCTTGTAAAAAAAACGAGTGACTAGTTTTTCTCTTCAATAGTTTTTAAACAGACATATGAATAGAAGTTGATGAATTGGAGATTCTATGTTTGAAACTACAAAAACTAGTCATATGGAAAGATTTCTGAAATAAAAGTAAAAGAACACTTGGGGACACCAATTTATATGCTACGATTGTTATGTGGACATACAAGGGTAATTAGGATGTCTGGTTGTATCTGGTCTTCCCATATTTTGTATTTAGTCAAGAAATATGGTTTTGTATTTGGTCAAGAAATACGGGGAAAGGATTGACAGCTGTTATTAATGTTTACATCAAGAATAGTTTTTTCCTAGTGATTGCATTCTCTTTATCCTAGGATAATTTTAGTTATGAAGTGTTATTGAAGAAGCTGTGTGGAAGTATTATGTAAAAATAATTATACATGAATTGATCTTTTTAGTTAAATATGGCTGGGAAGGGATTAGAGAAGGAAGGGATGGAGGGTTGAATTAGTTAAGCATTGTAACAAGGTGGCTATTGAAGTCCTTTAATTTCAATTTTAATAC</gDNA_template>
            <first_frame> S  *  Y  Q  I  R  R  V  P  L  F  K  N  S  L  R  H  S  P  L  I  F  L  S  P  T  *  E  G  R  I  S  F  P  A  C  C  R  T  H  H  F  F  A  M  L  L  L  P  F  C  K  L  T  P  L  W  K  Q  N  K  A  T  E  E  S  E  N  *  R  K  N  R  D  F  F  L  L  V  K  K  T  S  D  *  F  F  S  S  I  V  F  K  Q  T  Y  E  *  K  L  M  N  W  R  F  Y  V  *  N  Y  K  N  *  S  Y  G  K  I  S  E  I  K  V  K  E  H  L  G  T  P  I  Y  M  L  R  L  L  C  G  H  T  R  V  I  R  M  S  G  C  I  W  S  S  H  I  L  Y  L  V  K  K  Y  G  F  V  F  G  Q  E  I  R  G  K  D  *  Q  L  L  L  M  F  T  S  R  I  V  F  S  *  *  L  H  S  L  Y  P  R  I  I  L  V  M  K  C  Y  *  R  S  C  V  E  V  L  C  K  N  N  Y  T  *  I  D  L  F  S  *  I  W  L  G  R  D  *  R  R  K  G  W  R  V  E  L  V  K  H  C  N  K  V  A  I  E  V  L  *  F  Q  F  *  Y </first_frame>
            <second_frame>  A  D  I  K  *  D  G  F  L  F  L  K  I  L  S  G  T  V  P  *  F  F  S  L  L  L  K  R  G  E  Y  P  F  R  L  A  A  G  H  I  I  S  L  L  C  F  C  F  L  F  A  S  *  H  L  C  G  S  R  T  K  R  R  K  K  V  K  I  R  G  K  T  E  T  F  F  S  L  *  K  K  R  V  T  S  F  S  L  Q  *  F  L  N  R  H  M  N  R  S  *  *  I  G  D  S  M  F  E  T  T  K  T  S  H  M  E  R  F  L  K  *  K  *  K  N  T  W  G  H  Q  F  I  C  Y  D  C  Y  V  D  I  Q  G  *  L  G  C  L  V  V  S  G  L  P  I  F  C  I  *  S  R  N  M  V  L  Y  L  V  K  K  Y  G  E  R  I  D  S  C  Y  *  C  L  H  Q  E  *  F  F  P  S  D  C  I  L  F  I  L  G  *  F  *  L  *  S  V  I  E  E  A  V  W  K  Y  Y  V  K  I  I  I  H  E  L  I  F  L  V  K  Y  G  W  E  G  I  R  E  G  R  D  G  G  L  N  *  L  S  I  V  T  R  W  L  L  K  S  F  N  F  N  F  N   </second_frame>
            <third_frame>   L  I  S  N  K  T  G  S  S  F  *  K  F  S  Q  A  Q  S  L  D  F  S  L  S  Y  L  R  G  E  N  I  L  S  G  L  L  P  D  T  S  F  L  C  Y  A  F  A  S  F  L  Q  A  N  T  F  V  E  A  E  Q  S  D  G  R  K  *  K  L  E  E  K  Q  R  L  F  S  P  C  K  K  N  E  *  L  V  F  L  F  N  S  F  *  T  D  I  *  I  E  V  D  E  L  E  I  L  C  L  K  L  Q  K  L  V  I  W  K  D  F  *  N  K  S  K  R  T  L  G  D  T  N  L  Y  A  T  I  V  M  W  T  Y  K  G  N  *  D  V  W  L  Y  L  V  F  P  Y  F  V  F  S  Q  E  I  W  F  C  I  W  S  R  N  T  G  K  G  L  T  A  V  I  N  V  Y  I  K  N  S  F  F  L  V  I  A  F  S  L  S  *  D  N  F  S  Y  E  V  L  L  K  K  L  C  G  S  I  M  *  K  *  L  Y  M  N  *  S  F  *  L  N  M  A  G  K  G  L  E  K  E  G  M  E  G  *  I  S  *  A  L  *  Q  G  G  Y  *  S  P  L  I  S  I  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23060" PGL_stop="23621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23060" e_stop="23481"/>
            <exon e_start="23615" e_stop="23621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.443" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23060" e_stop="23481" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.443">
            <gDNA_intron_boundary i_start="23482" i_stop="23614" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="0.714">
            <gDNA_exon_boundary e_start="23615" e_stop="23621" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23060" stop="23481"/>
              <exon start="23615" stop="23621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23060" stop="23481"/>
              <exon start="23615" stop="23621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23060" stop="23481"/>
              <exon start="23615" stop="23621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTGGTAATTTCGATTTTGGGGGTTGTCACAGCCTCACAGGTTCGTCCATTCTAATCCTTGATGTGGTCGAAACCAGAAAAACTAACTTGTTTTATTGTCCGTGACTCGTGTTTATGATGAGTTCACCCTAATATAAGACTTGGGTGATAGATTGTATCAGTTCAATGACGCCAGAATCAAGGACAAAATCTAGGTGAAGGTTGTAAAAATTAGTTGAAGAATGAAAGTAGTTCTGGATACCAGAGACCAAGAAGTGGTGTTGTGTTGCAGGTGTATAGTTTTAAGGAATACTTTTTCTTGACGGCACAGGCTATCAATGTCCCATAAGTATAACTTAGGAAATCTGTCATTCATTTATGATAATTCGGAATATATTTGTTATTTTTTCCTTGAATAAATTAAATTGTTGTTCGTCAAA : AGATAAA</gDNA_template>
            <first_frame> R  A  G  N  F  D  F  G  G  C  H  S  L  T  G  S  S  I  L  I  L  D  V  V  E  T  R  K  T  N  L  F  Y  C  P  *  L  V  F  M  M  S  S  P  *  Y  K  T  W  V  I  D  C  I  S  S  M  T  P  E  S  R  T  K  S  R  *  R  L  *  K  L  V  E  E  *  K  *  F  W  I  P  E  T  K  K  W  C  C  V  A  G  V  *  F  *  G  I  L  F  L  D  G  T  G  Y  Q  C  P  I  S  I  T  *  E  I  C  H  S  F  M  I  I  R  N  I  F  V  I  F  S  L  N  K  L  N  C  C  S  S  K :   D  K </first_frame>
            <second_frame>  E  L  V  I  S  I  L  G  V  V  T  A  S  Q  V  R  P  F  *  S  L  M  W  S  K  P  E  K  L  T  C  F  I  V  R  D  S  C  L  *  *  V  H  P  N  I  R  L  G  *  *  I  V  S  V  Q  *  R  Q  N  Q  G  Q  N  L  G  E  G  C  K  N  *  L  K  N  E  S  S  S  G  Y  Q  R  P  R  S  G  V  V  L  Q  V  Y  S  F  K  E  Y  F  F  L  T  A  Q  A  I  N  V  P  *  V  *  L  R  K  S  V  I  H  L  *  *  F  G  I  Y  L  L  F  F  P  *  I  N  *  I  V  V  R  Q   : K  I   </second_frame>
            <third_frame>   S  W  *  F  R  F  W  G  L  S  Q  P  H  R  F  V  H  S  N  P  *  C  G  R  N  Q  K  N  *  L  V  L  L  S  V  T  R  V  Y  D  E  F  T  L  I  *  D  L  G  D  R  L  Y  Q  F  N  D  A  R  I  K  D  K  I  *  V  K  V  V  K  I  S  *  R  M  K  V  V  L  D  T  R  D  Q  E  V  V  L  C  C  R  C  I  V  L  R  N  T  F  S  *  R  H  R  L  S  M  S  H  K  Y  N  L  G  N  L  S  F  I  Y  D  N  S  E  Y  I  C  Y  F  F  L  E  *  I  K  L  L  F  V  K  :  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25443" PGL_stop="27136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25443" e_stop="25861"/>
            <exon e_start="26520" e_stop="27136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25443" e_stop="25861" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="25862" i_stop="26519" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26520" e_stop="27136" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25861"/>
              <exon start="26520" stop="26674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25861"/>
              <exon start="26520" stop="26758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25861"/>
              <exon start="26520" stop="26754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25861"/>
              <exon start="26520" stop="26695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25861"/>
              <exon start="26520" stop="26600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25861"/>
              <exon start="26520" stop="26555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25452" stop="25861"/>
              <exon start="26520" stop="26732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25454" stop="25861"/>
              <exon start="26520" stop="26757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25462" stop="25861"/>
              <exon start="26520" stop="26746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25528" stop="25861"/>
              <exon start="26520" stop="26717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25623" stop="25861"/>
              <exon start="26520" stop="27004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26529" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26537" stop="27075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26638" stop="27136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26771" stop="26995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAG : GTATCGTCATCGACTTATTTTGCACCTCCATGATAGAGGTGGCCAATGAATTCGAGCTACCAGCCTATGTTTTCTACACCTGTGGAGCAGCTCCTCTTGGACTTCAGTTCCATATACAGAGCCTTACTGATGACTTTGGAAGAGATATTACTAATTACAAAGATGAACCTGAAGCAGAACTTTCTATACCAACATATTTCAATCCATTTCCTGCAAAATGTTTGCCCTCTGTCGCGTTAGACAAGGAAGGAGGTTCCGCCATGTTTCTTGACCTTACAAGAAGGTTTAGAGAAACCAAAGGTATAATGATTAATACCTTTCTTGAACTGGATTCTCACGCGATAAACTTCCTCTCACAAGACAAGAATATACCACCGGTTTACCCTGTGGGACCTGTATTGAACCTTAATAATGTTCAAGGTGACAACTTGAGTTTATCAGACCAGAATATGATGAAATGGTTAGATGATCAACCCACTTCATCTGTAGTGTTCCTCTGTTTTGGTAGCGGAGGAAGTTTTACGATAGAGCAAGTTAAGGAAATATCATATGCTCTCGAGAATAGTGGGTGTCGGTTTTTGTGGACATTGAGACAACCACCACAGAAAGATGCAACA</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R :   Y  R  H  R  L  I  L  H  L  H  D  R  G  G  Q  *  I  R  A  T  S  L  C  F  L  H  L  W  S  S  S  S  W  T  S  V  P  Y  T  E  P  Y  *  *  L  W  K  R  Y  Y  *  L  Q  R  *  T  *  S  R  T  F  Y  T  N  I  F  Q  S  I  S  C  K  M  F  A  L  C  R  V  R  Q  G  R  R  F  R  H  V  S  *  P  Y  K  K  V  *  R  N  Q  R  Y  N  D  *  Y  L  S  *  T  G  F  S  R  D  K  L  P  L  T  R  Q  E  Y  T  T  G  L  P  C  G  T  C  I  E  P  *  *  C  S  R  *  Q  L  E  F  I  R  P  E  Y  D  E  M  V  R  *  S  T  H  F  I  C  S  V  P  L  F  W  *  R  R  K  F  Y  D  R  A  S  *  G  N  I  I  C  S  R  E  *  W  V  S  V  F  V  D  I  E  T  T  T  T  E  R  C  N  </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A   : G  I  V  I  D  L  F  C  T  S  M  I  E  V  A  N  E  F  E  L  P  A  Y  V  F  Y  T  C  G  A  A  P  L  G  L  Q  F  H  I  Q  S  L  T  D  D  F  G  R  D  I  T  N  Y  K  D  E  P  E  A  E  L  S  I  P  T  Y  F  N  P  F  P  A  K  C  L  P  S  V  A  L  D  K  E  G  G  S  A  M  F  L  D  L  T  R  R  F  R  E  T  K  G  I  M  I  N  T  F  L  E  L  D  S  H  A  I  N  F  L  S  Q  D  K  N  I  P  P  V  Y  P  V  G  P  V  L  N  L  N  N  V  Q  G  D  N  L  S  L  S  D  Q  N  M  M  K  W  L  D  D  Q  P  T  S  S  V  V  F  L  C  F  G  S  G  G  S  F  T  I  E  Q  V  K  E  I  S  Y  A  L  E  N  S  G  C  R  F  L  W  T  L  R  Q  P  P  Q  K  D  A  T </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  :  V  S  S  S  T  Y  F  A  P  P  *  *  R  W  P  M  N  S  S  Y  Q  P  M  F  S  T  P  V  E  Q  L  L  L  D  F  S  S  I  Y  R  A  L  L  M  T  L  E  E  I  L  L  I  T  K  M  N  L  K  Q  N  F  L  Y  Q  H  I  S  I  H  F  L  Q  N  V  C  P  L  S  R  *  T  R  K  E  V  P  P  C  F  L  T  L  Q  E  G  L  E  K  P  K  V  *  *  L  I  P  F  L  N  W  I  L  T  R  *  T  S  S  H  K  T  R  I  Y  H  R  F  T  L  W  D  L  Y  *  T  L  I  M  F  K  V  T  T  *  V  Y  Q  T  R  I  *  *  N  G  *  M  I  N  P  L  H  L  *  C  S  S  V  L  V  A  E  E  V  L  R  *  S  K  L  R  K  Y  H  M  L  S  R  I  V  G  V  G  F  C  G  H  *  D  N  H  H  R  K  M  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25468" stop="25861"/>
                    <exon start="26520" stop="27136"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGIVIDLFCTSMIEVANEFELPAYVFYTCGAAPLGLQFHIQSLTDDFGRDITNYKDEPEAELSIPTYFNPFPAKCLPSVALDKEGGSAMFLDLTRRFRETKGIMINTFLELDSHAINFLSQDKNIPPVYPVGPVLNLNNVQGDNLSLSDQNMMKWLDDQPTSSVVFLCFGSGGSFTIEQVKEISYALENSGCRFLWTLRQPPQKDAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25443" e_stop="26402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25443" e_stop="26402" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25443" stop="25806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25746" stop="26402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAATCTACCTTCCTTCTTTTAAGTTGCAAAAATATCAAAAGTACAAGTTTGTACCAAAAAAAGAAGAAAAAAAATGACAAGTGGCAAGAAAATAGAGTTGCTCTTCATTCCTTCTCCAGGAATTGGTCACTTAGTATCCACAGTAGAAATGGCAAAACTTCTCATAACTAGAGAAAAGAACATGTCCATTACAGTTCTTATTATCCAATCACCTCATGACAACAAGCTCCCTTCTTATATTCAATCATTAACCAATTTCAGCTCAAGTTTGAAATTCATTCACCTCCCTCAAGATGACACTGTTTTAAAGCTACTCAAAAGTAACCTTTTCACCTCCTATATTCCTGCTCATAAGCCTGCAGTTAGAGATGTTGTAGCTGAAATTGTCAAGACACAATCAAATGTTACACTAGCAGGTATGTATTTCAAATTAACTTTATGTGTCCAAGGCTTTGATACAGTAACAAGGTATGTTGCTTGGACTCTTTAAAAATGTTGATGGATATGTGTGTCGGATACTGCAAAAGTAGTGTACATAATTTTGGAGAGATTGAACATACAACTTGTGATTTATAGATTAGATGCATGTCATCATTGTCATGAATTTGGCTGCTACTACAAAAACAAAAAGATTGGTACTTCCTTCCCTCCCAACTTTATGATACTTTTAAGCATTTCGAGAGACAAATAGTTTTTCTCAAAGCATGATATGCCTTTTCAAGTATTAAAAATTATTAATTATTGTGACTTATAGTATGTTTCAAATATAAATTTTATTTACAAAAGCTTAAAGATTATATGCCCGAATTCATGGTCAAAATTTAAAAGTTTGGCTCTCGAAATCCAAATGATGTCGCATGACCGGGGGAGTATTTTAAGTTGAAAGGGGTGTTGCACTACTACACCAACCTTCTCAATTTAACGCGACTAGAAAATGTATTTCAATGACTTTATTGT</gDNA_template>
            <first_frame> T  K  S  T  F  L  L  L  S  C  K  N  I  K  S  T  S  L  Y  Q  K  K  K  K  K  N  D  K  W  Q  E  N  R  V  A  L  H  S  F  S  R  N  W  S  L  S  I  H  S  R  N  G  K  T  S  H  N  *  R  K  E  H  V  H  Y  S  S  Y  Y  P  I  T  S  *  Q  Q  A  P  F  L  Y  S  I  I  N  Q  F  Q  L  K  F  E  I  H  S  P  P  S  R  *  H  C  F  K  A  T  Q  K  *  P  F  H  L  L  Y  S  C  S  *  A  C  S  *  R  C  C  S  *  N  C  Q  D  T  I  K  C  Y  T  S  R  Y  V  F  Q  I  N  F  M  C  P  R  L  *  Y  S  N  K  V  C  C  L  D  S  L  K  M  L  M  D  M  C  V  G  Y  C  K  S  S  V  H  N  F  G  E  I  E  H  T  T  C  D  L  *  I  R  C  M  S  S  L  S  *  I  W  L  L  L  Q  K  Q  K  D  W  Y  F  L  P  S  Q  L  Y  D  T  F  K  H  F  E  R  Q  I  V  F  L  K  A  *  Y  A  F  S  S  I  K  N  Y  *  L  L  *  L  I  V  C  F  K  Y  K  F  Y  L  Q  K  L  K  D  Y  M  P  E  F  M  V  K  I  *  K  F  G  S  R  N  P  N  D  V  A  *  P  G  E  Y  F  K  L  K  G  V  L  H  Y  Y  T  N  L  L  N  L  T  R  L  E  N  V  F  Q  *  L  Y  C </first_frame>
            <second_frame>  Q  N  L  P  S  F  F  *  V  A  K  I  S  K  V  Q  V  C  T  K  K  R  R  K  K  M  T  S  G  K  K  I  E  L  L  F  I  P  S  P  G  I  G  H  L  V  S  T  V  E  M  A  K  L  L  I  T  R  E  K  N  M  S  I  T  V  L  I  I  Q  S  P  H  D  N  K  L  P  S  Y  I  Q  S  L  T  N  F  S  S  S  L  K  F  I  H  L  P  Q  D  D  T  V  L  K  L  L  K  S  N  L  F  T  S  Y  I  P  A  H  K  P  A  V  R  D  V  V  A  E  I  V  K  T  Q  S  N  V  T  L  A  G  M  Y  F  K  L  T  L  C  V  Q  G  F  D  T  V  T  R  Y  V  A  W  T  L  *  K  C  *  W  I  C  V  S  D  T  A  K  V  V  Y  I  I  L  E  R  L  N  I  Q  L  V  I  Y  R  L  D  A  C  H  H  C  H  E  F  G  C  Y  Y  K  N  K  K  I  G  T  S  F  P  P  N  F  M  I  L  L  S  I  S  R  D  K  *  F  F  S  K  H  D  M  P  F  Q  V  L  K  I  I  N  Y  C  D  L  *  Y  V  S  N  I  N  F  I  Y  K  S  L  K  I  I  C  P  N  S  W  S  K  F  K  S  L  A  L  E  I  Q  M  M  S  H  D  R  G  S  I  L  S  *  K  G  C  C  T  T  T  P  T  F  S  I  *  R  D  *  K  M  Y  F  N  D  F  I   </second_frame>
            <third_frame>   K  I  Y  L  P  S  F  K  L  Q  K  Y  Q  K  Y  K  F  V  P  K  K  E  E  K  K  *  Q  V  A  R  K  *  S  C  S  S  F  L  L  Q  E  L  V  T  *  Y  P  Q  *  K  W  Q  N  F  S  *  L  E  K  R  T  C  P  L  Q  F  L  L  S  N  H  L  M  T  T  S  S  L  L  I  F  N  H  *  P  I  S  A  Q  V  *  N  S  F  T  S  L  K  M  T  L  F  *  S  Y  S  K  V  T  F  S  P  P  I  F  L  L  I  S  L  Q  L  E  M  L  *  L  K  L  S  R  H  N  Q  M  L  H  *  Q  V  C  I  S  N  *  L  Y  V  S  K  A  L  I  Q  *  Q  G  M  L  L  G  L  F  K  N  V  D  G  Y  V  C  R  I  L  Q  K  *  C  T  *  F  W  R  D  *  T  Y  N  L  *  F  I  D  *  M  H  V  I  I  V  M  N  L  A  A  T  T  K  T  K  R  L  V  L  P  S  L  P  T  L  *  Y  F  *  A  F  R  E  T  N  S  F  S  Q  S  M  I  C  L  F  K  Y  *  K  L  L  I  I  V  T  Y  S  M  F  Q  I  *  I  L  F  T  K  A  *  R  L  Y  A  R  I  H  G  Q  N  L  K  V  W  L  S  K  S  K  *  C  R  M  T  G  G  V  F  *  V  E  R  G  V  A  L  L  H  Q  P  S  Q  F  N  A  T  R  K  C  I  S  M  T  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25468" stop="25935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKISKVQVCTKKRRKKMTSGKKIELLFIPSPGIGHLVSTVEMAKLLITREKNMSITVLIIQSPHDNKLPSYIQSLTNFSSSLKFIHLPQDDTVLKLLKSNLFTSYIPAHKPAVRDVVAEIVKTQSNVTLAGMYFKLTLCVQGFDTVTRYVAWTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27800" PGL_stop="28382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27800" e_stop="28382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27800" e_stop="28382" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27800" stop="28382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27882" stop="28382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTGGAGTGCCAATGGCTACTTGGCCAATGTACGCAGAGCAGCAAGCAAATGCATTTCAGTTGGTTAAGGATTTGGAAATGGCAGTCGAGCTAAAGATGGATTACAGGAAGGAACCAACAGGGAAGATGGGCCAAAAAGTTATAGTGAAAGCAGAGGAGATTGAGAAAGCAATAAGAGAACTTATGGACCCTGAAAATAAAATTCGGATGAAAGTGAAGGAGATGAAAGAGAAGAGCAGAGCAGCAACCACGGAAGGAGGCTCTTCTTACACTTCTATTGGAAGTTTCATCCAGAGTATCATGGAGAATACTCCATGATTAGCTGCTTTGATATGTTTTTCCTTGAACCTAGGGTCTATCAGAAACAACCTCTCTACCTCTAGAAGGTAGAAGTAAGGTTTGCATACAGTTTACTCTCCCCTGACCCACTTGTGGATTACGTGGAGTATGTTGTTGTTGTTGTTGTAATTTGATCGATATAGTTGGTTATGTACCCTCGTTTCTAAGTTACTAGCAAAGGTTGCCCGTGCTGAGCACGACCAAGATTGTATTAGTTGTTATAATATCTTTTTTTAGCTGA</gDNA_template>
            <first_frame> Y  F  G  V  P  M  A  T  W  P  M  Y  A  E  Q  Q  A  N  A  F  Q  L  V  K  D  L  E  M  A  V  E  L  K  M  D  Y  R  K  E  P  T  G  K  M  G  Q  K  V  I  V  K  A  E  E  I  E  K  A  I  R  E  L  M  D  P  E  N  K  I  R  M  K  V  K  E  M  K  E  K  S  R  A  A  T  T  E  G  G  S  S  Y  T  S  I  G  S  F  I  Q  S  I  M  E  N  T  P  *  L  A  A  L  I  C  F  S  L  N  L  G  S  I  R  N  N  L  S  T  S  R  R  *  K  *  G  L  H  T  V  Y  S  P  L  T  H  L  W  I  T  W  S  M  L  L  L  L  L  *  F  D  R  Y  S  W  L  C  T  L  V  S  K  L  L  A  K  V  A  R  A  E  H  D  Q  D  C  I  S  C  Y  N  I  F  F  *  L  </first_frame>
            <second_frame>  I  L  E  C  Q  W  L  L  G  Q  C  T  Q  S  S  K  Q  M  H  F  S  W  L  R  I  W  K  W  Q  S  S  *  R  W  I  T  G  R  N  Q  Q  G  R  W  A  K  K  L  *  *  K  Q  R  R  L  R  K  Q  *  E  N  L  W  T  L  K  I  K  F  G  *  K  *  R  R  *  K  R  R  A  E  Q  Q  P  R  K  E  A  L  L  T  L  L  L  E  V  S  S  R  V  S  W  R  I  L  H  D  *  L  L  *  Y  V  F  P  *  T  *  G  L  S  E  T  T  S  L  P  L  E  G  R  S  K  V  C  I  Q  F  T  L  P  *  P  T  C  G  L  R  G  V  C  C  C  C  C  C  N  L  I  D  I  V  G  Y  V  P  S  F  L  S  Y  *  Q  R  L  P  V  L  S  T  T  K  I  V  L  V  V  I  I  S  F  F  S  * </second_frame>
            <third_frame>   F  W  S  A  N  G  Y  L  A  N  V  R  R  A  A  S  K  C  I  S  V  G  *  G  F  G  N  G  S  R  A  K  D  G  L  Q  E  G  T  N  R  E  D  G  P  K  S  Y  S  E  S  R  G  D  *  E  S  N  K  R  T  Y  G  P  *  K  *  N  S  D  E  S  E  G  D  E  R  E  E  Q  S  S  N  H  G  R  R  L  F  L  H  F  Y  W  K  F  H  P  E  Y  H  G  E  Y  S  M  I  S  C  F  D  M  F  F  L  E  P  R  V  Y  Q  K  Q  P  L  Y  L  *  K  V  E  V  R  F  A  Y  S  L  L  S  P  D  P  L  V  D  Y  V  E  Y  V  V  V  V  V  V  I  *  S  I  *  L  V  M  Y  P  R  F  *  V  T  S  K  G  C  P  C  *  A  R  P  R  L  Y  *  L  L  *  Y  L  F  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27800" stop="28120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFGVPMATWPMYAEQQANAFQLVKDLEMAVELKMDYRKEPTGKMGQKVIVKAEEIEKAIRELMDPENKIRMKVKEMKEKSRAATTEGGSSYTSIGSFIQSIMENTP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32657" PGL_stop="30665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32657" e_stop="32463"/>
            <exon e_start="31227" e_stop="30665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32657" e_stop="32463" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32462" i_stop="31228" i_length="1235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31227" e_stop="30665" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32657" stop="32463"/>
              <exon start="31227" stop="30794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32657" stop="32480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32633" stop="32463"/>
              <exon start="31227" stop="30665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32629" stop="32463"/>
              <exon start="31227" stop="30875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32629" stop="32463"/>
              <exon start="31227" stop="30958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32615" stop="32463"/>
              <exon start="31227" stop="30782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACTTTAATTGTTGGCTGACAATTATTTTCCCCTTCCCCTCAAAAAGGTGAAACCCGTCCCTCTCGAGTCTCTGTCTTCACGCTGCTCGCAATTCGTCGCCGTTGCCGTGGCCGTCGCAGAAGCAACAGTGCCGCACGTCGCCGTCGCAGCAGCAGCAGCAGCAGTGCCGCACATCCATCCTGCGATCTCAAAG : ATATTGTATCATATTGTCAAAGGATGCAGTTTCTAAAAGACATCGTACCTGCTGCATTGAACAATATAAACACAAAGTTTATTGTTTTGGACAAAGGGAGGATAGATTTAGAAGGGCAACACAAGACATGTTTGGCACTAGTTGCAGATGAGACAGCTGCGGTTCACTTTCAAATGTGGGGTGATGAATGTGATGTTTTTGAACCTGGGGATATCATCCGGTTAGAAAATGGCATCTTTTCTTATATTCGCAATAACCGCAATAACCATGTACTACGGGCAGGTAAGCGAGGCAAGGCAGAAAAAGTGGGAGAGTTTACCATGGCCTATGTGGAGAAACCAAACATGAGTGAGATACATTGGGTCCCTGATCCGAAGAATCCTAAGATATATTTGCCAGTGGATTTTACTTCTTACATTTCATCAACACATTGAGTATTGGGCAAACTTATATCTGACTGGTACTTTCCTTTAAACTCTCTTCCATGATGGTTGCTTGAATATGACTCGATCGAGTTTATGTTAATCTATTCAGTTCAGATTCTTTGAAGGGTCTTATGATGC</gDNA_template>
            <first_frame> V  L  *  L  L  A  D  N  Y  F  P  L  P  L  K  K  V  K  P  V  P  L  E  S  L  S  S  R  C  S  Q  F  V  A  V  A  V  A  V  A  E  A  T  V  P  H  V  A  V  A  A  A  A  A  A  V  P  H  I  H  P  A  I  S  K  :  I  L  Y  H  I  V  K  G  C  S  F  *  K  T  S  Y  L  L  H  *  T  I  *  T  Q  S  L  L  F  W  T  K  G  G  *  I  *  K  G  N  T  R  H  V  W  H  *  L  Q  M  R  Q  L  R  F  T  F  K  C  G  V  M  N  V  M  F  L  N  L  G  I  S  S  G  *  K  M  A  S  F  L  I  F  A  I  T  A  I  T  M  Y  Y  G  Q  V  S  E  A  R  Q  K  K  W  E  S  L  P  W  P  M  W  R  N  Q  T  *  V  R  Y  I  G  S  L  I  R  R  I  L  R  Y  I  C  Q  W  I  L  L  L  T  F  H  Q  H  I  E  Y  W  A  N  L  Y  L  T  G  T  F  L  *  T  L  F  H  D  G  C  L  N  M  T  R  S  S  L  C  *  S  I  Q  F  R  F  F  E  G  S  Y  D   </first_frame>
            <second_frame>  Y  F  N  C  W  L  T  I  I  F  P  F  P  S  K  R  *  N  P  S  L  S  S  L  C  L  H  A  A  R  N  S  S  P  L  P  W  P  S  Q  K  Q  Q  C  R  T  S  P  S  Q  Q  Q  Q  Q  Q  C  R  T  S  I  L  R  S  Q  R :   Y  C  I  I  L  S  K  D  A  V  S  K  R  H  R  T  C  C  I  E  Q  Y  K  H  K  V  Y  C  F  G  Q  R  E  D  R  F  R  R  A  T  Q  D  M  F  G  T  S  C  R  *  D  S  C  G  S  L  S  N  V  G  *  *  M  *  C  F  *  T  W  G  Y  H  P  V  R  K  W  H  L  F  L  Y  S  Q  *  P  Q  *  P  C  T  T  G  R  *  A  R  Q  G  R  K  S  G  R  V  Y  H  G  L  C  G  E  T  K  H  E  *  D  T  L  G  P  *  S  E  E  S  *  D  I  F  A  S  G  F  Y  F  L  H  F  I  N  T  L  S  I  G  Q  T  Y  I  *  L  V  L  S  F  K  L  S  S  M  M  V  A  *  I  *  L  D  R  V  Y  V  N  L  F  S  S  D  S  L  K  G  L  M  M  </second_frame>
            <third_frame>   T  L  I  V  G  *  Q  L  F  S  P  S  P  Q  K  G  E  T  R  P  S  R  V  S  V  F  T  L  L  A  I  R  R  R  C  R  G  R  R  R  S  N  S  A  A  R  R  R  R  S  S  S  S  S  S  A  A  H  P  S  C  D  L  K   : D  I  V  S  Y  C  Q  R  M  Q  F  L  K  D  I  V  P  A  A  L  N  N  I  N  T  K  F  I  V  L  D  K  G  R  I  D  L  E  G  Q  H  K  T  C  L  A  L  V  A  D  E  T  A  A  V  H  F  Q  M  W  G  D  E  C  D  V  F  E  P  G  D  I  I  R  L  E  N  G  I  F  S  Y  I  R  N  N  R  N  N  H  V  L  R  A  G  K  R  G  K  A  E  K  V  G  E  F  T  M  A  Y  V  E  K  P  N  M  S  E  I  H  W  V  P  D  P  K  N  P  K  I  Y  L  P  V  D  F  T  S  Y  I  S  S  T  H  *  V  L  G  K  L  I  S  D  W  Y  F  P  L  N  S  L  P  *  W  L  L  E  Y  D  S  I  E  F  M  L  I  Y  S  V  Q  I  L  *  R  V  L  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32637" stop="32463"/>
                    <exon start="31227" stop="30794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLFSPSPQKGETRPSRVSVFTLLAIRRRCRGRRRSNSAARRRRSSSSSSAAHPSCDLKDIVSYCQRMQFLKDIVPAALNNINTKFIVLDKGRIDLEGQHKTCLALVADETAAVHFQMWGDECDVFEPGDIIRLENGIFSYIRNNRNNHVLRAGKRGKAEKVGEFTMAYVEKPNMSEIHWVPDPKNPKIYLPVDFTSYISSTH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35972" PGL_stop="34764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35972" e_stop="34764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="35972" e_stop="34764" e_length="1209"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35921" stop="35451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35581" stop="34764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35343" stop="34843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGAAAATGCAAAGTAGTATGAGAAGCTCAAGAAGGCATGTGTTTGAAGGTATTGAGTTCAAGGATCATGACGATGAGAGTGTTGAAATGAAGGAAGAGAAAGGTAGAGTTAGCATTTGCATTCCACCTAAAAATGCTTTGCTTCTTATGAGATGTCGATCTGATCCTATGAAAATGGCGGATATTGCTAATCGATTCTGGGAATCACCTGCTCGGGAAGAAACTAATGAGAAAGAAATCGGAGAAAATGCGGAGGTGAAAGAAGTAGAAGATACAGAAAACACTGAATGCAATGTACTACAGGAAACTAGTGTTTCTGTAGATCTGGTAGAAAATGAAGAAGCAGTAGAAGTCACAGATAGTAGTAAGGATGAAGAAAAGCTCAAATGCGATGAATTAACGCCAGAAACAGAGGAACAAGATGAAGAAGACAGTGAGATGAAGGGACTTGTAGCAGTAGCTGCAGTAGAAGTAAACTCCATTGTTGATCAACTCCTTGAATCAGAGAAAAAAGAAGAAGAAGAAGACAGCAGCATTCAGAGTTTTTCATCTTTCTCAGAAAACGAAGAAGATGAAACATTGGAAGAAGAAGAGAGGTTCAAATCAATTATTAAGAAGGTGATCGAAGAAACACTCTTGTTAGAACACATTGATAGAGAAGATGCAAAACAAATTCAACACGAACACAAACACGAAGAAGAAGCAAAATCTGATGCAGTATTTTCAAACAATGAAAACGAAAAAGAATCGAGAAAACAACAGAACGAATCAATTCTTCCAGATTGCTTGCTTCTAATGATGTGTGAGCCCAAGCTATCCATGGAGGTTTCTAAGGAAACATGGGTATACAGCAGCACCGAAGTAAAACAAGCTAAAACAGTGACGACAAAGAAGAAGAAGAATGAAATTCCCGAGGATCCAAAGAGAAGGCGAAGCATTGACAAGAGTAAACAACAACATCTCCTCCTCCAACCACCAAGGTCATCGTGTTCTTTCCCGGCGACCGGAGTTTCGCCGGCGATATCCATGGCAACGATGATAGAGCAGAAACTGGTAAACGCAGTGGCTTACGAGCCGTTAGTGTTGACAAGGTGCAAGTCGGAGCCGATGAGGACGGTGGCGGGGGGGACGGCTAAGCTTGTACCGGAGACTTGTTTCTGGAAGAATATGAAGATTGAGCCACATCGACGAGCTACATTTGGATTCGG</gDNA_template>
            <first_frame> R  E  N  A  K  *  Y  E  K  L  K  K  A  C  V  *  R  Y  *  V  Q  G  S  *  R  *  E  C  *  N  E  G  R  E  R  *  S  *  H  L  H  S  T  *  K  C  F  A  S  Y  E  M  S  I  *  S  Y  E  N  G  G  Y  C  *  S  I  L  G  I  T  C  S  G  R  N  *  *  E  R  N  R  R  K  C  G  G  E  R  S  R  R  Y  R  K  H  *  M  Q  C  T  T  G  N  *  C  F  C  R  S  G  R  K  *  R  S  S  R  S  H  R  *  *  *  G  *  R  K  A  Q  M  R  *  I  N  A  R  N  R  G  T  R  *  R  R  Q  *  D  E  G  T  C  S  S  S  C  S  R  S  K  L  H  C  *  S  T  P  *  I  R  E  K  R  R  R  R  R  Q  Q  H  S  E  F  F  I  F  L  R  K  R  R  R  *  N  I  G  R  R  R  E  V  Q  I  N  Y  *  E  G  D  R  R  N  T  L  V  R  T  H  *  *  R  R  C  K  T  N  S  T  R  T  Q  T  R  R  R  S  K  I  *  C  S  I  F  K  Q  *  K  R  K  R  I  E  K  T  T  E  R  I  N  S  S  R  L  L  A  S  N  D  V  *  A  Q  A  I  H  G  G  F  *  G  N  M  G  I  Q  Q  H  R  S  K  T  S  *  N  S  D  D  K  E  E  E  E  *  N  S  R  G  S  K  E  K  A  K  H  *  Q  E  *  T  T  T  S  P  P  P  T  T  K  V  I  V  F  F  P  G  D  R  S  F  A  G  D  I  H  G  N  D  D  R  A  E  T  G  K  R  S  G  L  R  A  V  S  V  D  K  V  Q  V  G  A  D  E  D  G  G  G  G  D  G  *  A  C  T  G  D  L  F  L  E  E  Y  E  D  *  A  T  S  T  S  Y  I  W  I  R </first_frame>
            <second_frame>  E  K  M  Q  S  S  M  R  S  S  R  R  H  V  F  E  G  I  E  F  K  D  H  D  D  E  S  V  E  M  K  E  E  K  G  R  V  S  I  C  I  P  P  K  N  A  L  L  L  M  R  C  R  S  D  P  M  K  M  A  D  I  A  N  R  F  W  E  S  P  A  R  E  E  T  N  E  K  E  I  G  E  N  A  E  V  K  E  V  E  D  T  E  N  T  E  C  N  V  L  Q  E  T  S  V  S  V  D  L  V  E  N  E  E  A  V  E  V  T  D  S  S  K  D  E  E  K  L  K  C  D  E  L  T  P  E  T  E  E  Q  D  E  E  D  S  E  M  K  G  L  V  A  V  A  A  V  E  V  N  S  I  V  D  Q  L  L  E  S  E  K  K  E  E  E  E  D  S  S  I  Q  S  F  S  S  F  S  E  N  E  E  D  E  T  L  E  E  E  E  R  F  K  S  I  I  K  K  V  I  E  E  T  L  L  L  E  H  I  D  R  E  D  A  K  Q  I  Q  H  E  H  K  H  E  E  E  A  K  S  D  A  V  F  S  N  N  E  N  E  K  E  S  R  K  Q  Q  N  E  S  I  L  P  D  C  L  L  L  M  M  C  E  P  K  L  S  M  E  V  S  K  E  T  W  V  Y  S  S  T  E  V  K  Q  A  K  T  V  T  T  K  K  K  K  N  E  I  P  E  D  P  K  R  R  R  S  I  D  K  S  K  Q  Q  H  L  L  L  Q  P  P  R  S  S  C  S  F  P  A  T  G  V  S  P  A  I  S  M  A  T  M  I  E  Q  K  L  V  N  A  V  A  Y  E  P  L  V  L  T  R  C  K  S  E  P  M  R  T  V  A  G  G  T  A  K  L  V  P  E  T  C  F  W  K  N  M  K  I  E  P  H  R  R  A  T  F  G  F   </second_frame>
            <third_frame>   R  K  C  K  V  V  *  E  A  Q  E  G  M  C  L  K  V  L  S  S  R  I  M  T  M  R  V  L  K  *  R  K  R  K  V  E  L  A  F  A  F  H  L  K  M  L  C  F  L  *  D  V  D  L  I  L  *  K  W  R  I  L  L  I  D  S  G  N  H  L  L  G  K  K  L  M  R  K  K  S  E  K  M  R  R  *  K  K  *  K  I  Q  K  T  L  N  A  M  Y  Y  R  K  L  V  F  L  *  I  W  *  K  M  K  K  Q  *  K  S  Q  I  V  V  R  M  K  K  S  S  N  A  M  N  *  R  Q  K  Q  R  N  K  M  K  K  T  V  R  *  R  D  L  *  Q  *  L  Q  *  K  *  T  P  L  L  I  N  S  L  N  Q  R  K  K  K  K  K  K  T  A  A  F  R  V  F  H  L  S  Q  K  T  K  K  M  K  H  W  K  K  K  R  G  S  N  Q  L  L  R  R  *  S  K  K  H  S  C  *  N  T  L  I  E  K  M  Q  N  K  F  N  T  N  T  N  T  K  K  K  Q  N  L  M  Q  Y  F  Q  T  M  K  T  K  K  N  R  E  N  N  R  T  N  Q  F  F  Q  I  A  C  F  *  *  C  V  S  P  S  Y  P  W  R  F  L  R  K  H  G  Y  T  A  A  P  K  *  N  K  L  K  Q  *  R  Q  R  R  R  R  M  K  F  P  R  I  Q  R  E  G  E  A  L  T  R  V  N  N  N  I  S  S  S  N  H  Q  G  H  R  V  L  S  R  R  P  E  F  R  R  R  Y  P  W  Q  R  *  *  S  R  N  W  *  T  Q  W  L  T  S  R  *  C  *  Q  G  A  S  R  S  R  *  G  R  W  R  G  G  R  L  S  L  Y  R  R  L  V  S  G  R  I  *  R  L  S  H  I  D  E  L  H  L  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35971" stop="34766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMQSSMRSSRRHVFEGIEFKDHDDESVEMKEEKGRVSICIPPKNALLLMRCRSDPMKMADIANRFWESPAREETNEKEIGENAEVKEVEDTENTECNVLQETSVSVDLVENEEAVEVTDSSKDEEKLKCDELTPETEEQDEEDSEMKGLVAVAAVEVNSIVDQLLESEKKEEEEDSSIQSFSSFSENEEDETLEEEERFKSIIKKVIEETLLLEHIDREDAKQIQHEHKHEEEAKSDAVFSNNENEKESRKQQNESILPDCLLLMMCEPKLSMEVSKETWVYSSTEVKQAKTVTTKKKKNEIPEDPKRRRSIDKSKQQHLLLQPPRSSCSFPATGVSPAISMATMIEQKLVNAVAYEPLVLTRCKSEPMRTVAGGTAKLVPETCFWKNMKIEPHRRATFGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36768" PGL_stop="36052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36768" e_stop="36052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36768" e_stop="36052" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36768" stop="36052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAACACAGCTTCTCTACACTTACAGACCCCCAAATCCATGGCTACCTACAACAGCAATACCAAGAAACCATTATCACATTACTGAAAACTCCTTCATCTCTTCTTTTTTGTATACTTTCTTCTTCAAATGAAACTCACCAAATCCATCCTTAGTCCTAGCCATGCTCGGCATGACCCACCTCTTACTCTTCCCACTTCTCTCAGTCGGAAGCTTAAAGCTAATGGCAGTATTAAAGGCGGACAATCCCCAGCTACGTTTCCTACTACCACCGGAAAGAAACGAGGGTCGAGTTTTGATAACCCGGAACCTTCGTCTCCGAAGGTGACTTGTATTGGTCAGGTGAAAATGAAGACGAAGAAGAAAGTTAGGCAAACACGGAATTTGTCTAATAGAAGGAGTGATATAAGTTTCAGGAAGTTGGAAGAAGAAAAAAGGGGAGTTTTGATTCAGAATCAGAGGAGTTCTAGTGTGCATTTGCAGGCGCAAGATCAATGTGCGGTGGCGCATAGAAATCAGAGATGGGTACATTTGCCAGTAACGATATATGAAGCTTTGAGAGAGTTTAGCTGTTTGTTTCCATGTCGGTCTTCGTGTTTTTCGAATGAGAAAGGAAAACAACAAGATAAAGTTAATGGATCTAGAGATGTTGATAATAATAATGGGCAGAGGAGATGTGAGGATGTTGTTGCTAGATGGCTAGTTGCATTACAAG</gDNA_template>
            <first_frame> K  K  T  Q  L  L  Y  T  Y  R  P  P  N  P  W  L  P  T  T  A  I  P  R  N  H  Y  H  I  T  E  N  S  F  I  S  S  F  L  Y  T  F  F  F  K  *  N  S  P  N  P  S  L  V  L  A  M  L  G  M  T  H  L  L  L  F  P  L  L  S  V  G  S  L  K  L  M  A  V  L  K  A  D  N  P  Q  L  R  F  L  L  P  P  E  R  N  E  G  R  V  L  I  T  R  N  L  R  L  R  R  *  L  V  L  V  R  *  K  *  R  R  R  R  K  L  G  K  H  G  I  C  L  I  E  G  V  I  *  V  S  G  S  W  K  K  K  K  G  E  F  *  F  R  I  R  G  V  L  V  C  I  C  R  R  K  I  N  V  R  W  R  I  E  I  R  D  G  Y  I  C  Q  *  R  Y  M  K  L  *  E  S  L  A  V  C  F  H  V  G  L  R  V  F  R  M  R  K  E  N  N  K  I  K  L  M  D  L  E  M  L  I  I  I  M  G  R  G  D  V  R  M  L  L  L  D  G  *  L  H  Y  K </first_frame>
            <second_frame>  K  K  H  S  F  S  T  L  T  D  P  Q  I  H  G  Y  L  Q  Q  Q  Y  Q  E  T  I  I  T  L  L  K  T  P  S  S  L  L  F  C  I  L  S  S  S  N  E  T  H  Q  I  H  P  *  S  *  P  C  S  A  *  P  T  S  Y  S  S  H  F  S  Q  S  E  A  *  S  *  W  Q  Y  *  R  R  T  I  P  S  Y  V  S  Y  Y  H  R  K  E  T  R  V  E  F  *  *  P  G  T  F  V  S  E  G  D  L  Y  W  S  G  E  N  E  D  E  E  E  S  *  A  N  T  E  F  V  *  *  K  E  *  Y  K  F  Q  E  V  G  R  R  K  K  G  S  F  D  S  E  S  E  E  F  *  C  A  F  A  G  A  R  S  M  C  G  G  A  *  K  S  E  M  G  T  F  A  S  N  D  I  *  S  F  E  R  V  *  L  F  V  S  M  S  V  F  V  F  F  E  *  E  R  K  T  T  R  *  S  *  W  I  *  R  C  *  *  *  *  W  A  E  E  M  *  G  C  C  C  *  M  A  S  C  I  T   </second_frame>
            <third_frame>   K  N  T  A  S  L  H  L  Q  T  P  K  S  M  A  T  Y  N  S  N  T  K  K  P  L  S  H  Y  *  K  L  L  H  L  F  F  F  V  Y  F  L  L  Q  M  K  L  T  K  S  I  L  S  P  S  H  A  R  H  D  P  P  L  T  L  P  T  S  L  S  R  K  L  K  A  N  G  S  I  K  G  G  Q  S  P  A  T  F  P  T  T  T  G  K  K  R  G  S  S  F  D  N  P  E  P  S  S  P  K  V  T  C  I  G  Q  V  K  M  K  T  K  K  K  V  R  Q  T  R  N  L  S  N  R  R  S  D  I  S  F  R  K  L  E  E  E  K  R  G  V  L  I  Q  N  Q  R  S  S  S  V  H  L  Q  A  Q  D  Q  C  A  V  A  H  R  N  Q  R  W  V  H  L  P  V  T  I  Y  E  A  L  R  E  F  S  C  L  F  P  C  R  S  S  C  F  S  N  E  K  G  K  Q  Q  D  K  V  N  G  S  R  D  V  D  N  N  N  G  Q  R  R  C  E  D  V  V  A  R  W  L  V  A  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36679" stop="36053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLHLFFFVYFLLQMKLTKSILSPSHARHDPPLTLPTSLSRKLKANGSIKGGQSPATFPTTTGKKRGSSFDNPEPSSPKVTCIGQVKMKTKKKVRQTRNLSNRRSDISFRKLEEEKRGVLIQNQRSSSVHLQAQDQCAVAHRNQRWVHLPVTIYEALREFSCLFPCRSSCFSNEKGKQQDKVNGSRDVDNNNGQRRCEDVVARWLVALQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47151" PGL_stop="40222"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47151" e_stop="46838"/>
            <exon e_start="45409" e_stop="45182"/>
            <exon e_start="44865" e_stop="44792"/>
            <exon e_start="43276" e_stop="43117"/>
            <exon e_start="42969" e_stop="42850"/>
            <exon e_start="42739" e_stop="42631"/>
            <exon e_start="40912" e_stop="40222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47151" e_stop="46838" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.933">
            <gDNA_intron_boundary i_start="46837" i_stop="45410" i_length="1428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45409" e_stop="45182" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="45181" i_stop="44866" i_length="316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44865" e_stop="44792" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44791" i_stop="43277" i_length="1515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43276" e_stop="43117" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43116" i_stop="42970" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42969" e_stop="42850" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.952">
            <gDNA_intron_boundary i_start="42849" i_stop="42740" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42739" e_stop="42631" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40912" e_stop="40222" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47151" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43117"/>
              <exon start="42969" stop="42926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47147" stop="46838"/>
              <exon start="45409" stop="45224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47129" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47108" stop="46838"/>
              <exon start="45409" stop="45229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47102" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44792"/>
              <exon start="43276" stop="43181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47088" stop="46838"/>
              <exon start="45409" stop="45182"/>
              <exon start="44865" stop="44809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47088" stop="46838"/>
              <exon start="45409" stop="45236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47088" stop="46838"/>
              <exon start="45409" stop="45357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43150" stop="43117"/>
              <exon start="42969" stop="42850"/>
              <exon start="42739" stop="42631"/>
              <exon start="40912" stop="40409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40716" stop="40222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTCTTTCACTGAACCATTCAACAATATGCATCCATTTTCCCCAAATCACTGAATTTGCTGCTCAATTTCTTTGCAAAACAATGATCCGATTGAGATATCGGAGGATTGAGATTGGTACTGGTGATGGAGGAATTTCGAATTTAGGTTTTGGCAAAAGAGGTATTGTTACAAGCTGTAGAGCTGTGTTGTTGCCGCGATTTGGTGGACCGGAGATGCTTGAGTTTCGTGACAATGTATCTGTTCCTGATCTAAAACCTAATCAAGTGCTTGTTCGTGCTCGTGCTGTTTCAATCAATCCGCTTGATACCAGA : ATGCGATCAGGCTATGGACGTTCAATTTTTGAACCACTTCTACCATTGATTTTGGGCCGAGATATAAGTGGTGAAGTTGCAGCTGTTGGAAATTCTGTCAAGTCACTTACAGTTGGGCAGGATGTATTTGGTGCTCTGCATCCAACCGCTGTGAGGGGTACTTATACTGACTATGCTATTCTTGCGGAAGATGAACTTGCTCCAAAGCCGGGATCACTTTCACATGTG : GAAGCCAGTGCTATCCCTTTTGCTGCTCTAACTGCTTGGCGTGCGCTAAAAAGTACTGCCAGAATAAGAGAGGG : GCATAGGGTATTGGTCATAGGTGGAGGAGGAGCAGTAGGTTTCTCTGCAATTCAGCTTGCTGTGGCTGCAGGCTGCCATGTTTCTACTACGTGTGGAGGAGAGAGTATAAGTCGCATTTTAGCAGCCGGTGCTGAGCAGGCCATTGACTATACCAGTGAG : GATGCTGAAGTAGCACTTAAGGGGCATTTTGATGCTGTCTTGGATACAATTGGTGTGCCAGATACAGAGAGAATGGGCATTAGCCTTTTAAAGAAAGGTGGACACTACATGACGTTACAG : GGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> T  L  F  H  *  T  I  Q  Q  Y  A  S  I  F  P  K  S  L  N  L  L  L  N  F  F  A  K  Q  *  S  D  *  D  I  G  G  L  R  L  V  L  V  M  E  E  F  R  I  *  V  L  A  K  E  V  L  L  Q  A  V  E  L  C  C  C  R  D  L  V  D  R  R  C  L  S  F  V  T  M  Y  L  F  L  I  *  N  L  I  K  C  L  F  V  L  V  L  F  Q  S  I  R  L  I  P  E :   C  D  Q  A  M  D  V  Q  F  L  N  H  F  Y  H  *  F  W  A  E  I  *  V  V  K  L  Q  L  L  E  I  L  S  S  H  L  Q  L  G  R  M  Y  L  V  L  C  I  Q  P  L  *  G  V  L  I  L  T  M  L  F  L  R  K  M  N  L  L  Q  S  R  D  H  F  H  M  W :   K  P  V  L  S  L  L  L  L  *  L  L  G  V  R  *  K  V  L  P  E  *  E  R   : G  I  G  Y  W  S  *  V  E  E  E  Q  *  V  S  L  Q  F  S  L  L  W  L  Q  A  A  M  F  L  L  R  V  E  E  R  V  *  V  A  F  *  Q  P  V  L  S  R  P  L  T  I  P  V  R :   M  L  K  *  H  L  R  G  I  L  M  L  S  W  I  Q  L  V  C  Q  I  Q  R  E  W  A  L  A  F  *  R  K  V  D  T  T  *  R  Y  R :   G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </first_frame>
            <second_frame>  H  S  F  T  E  P  F  N  N  M  H  P  F  S  P  N  H  *  I  C  C  S  I  S  L  Q  N  N  D  P  I  E  I  S  E  D  *  D  W  Y  W  *  W  R  N  F  E  F  R  F  W  Q  K  R  Y  C  Y  K  L  *  S  C  V  V  A  A  I  W  W  T  G  D  A  *  V  S  *  Q  C  I  C  S  *  S  K  T  *  S  S  A  C  S  C  S  C  C  F  N  Q  S  A  *  Y  Q   : N  A  I  R  L  W  T  F  N  F  *  T  T  S  T  I  D  F  G  P  R  Y  K  W  *  S  C  S  C  W  K  F  C  Q  V  T  Y  S  W  A  G  C  I  W  C  S  A  S  N  R  C  E  G  Y  L  Y  *  L  C  Y  S  C  G  R  *  T  C  S  K  A  G  I  T  F  T  C   : G  S  Q  C  Y  P  F  C  C  S  N  C  L  A  C  A  K  K  Y  C  Q  N  K  R  G  :  A  *  G  I  G  H  R  W  R  R  S  S  R  F  L  C  N  S  A  C  C  G  C  R  L  P  C  F  Y  Y  V  W  R  R  E  Y  K  S  H  F  S  S  R  C  *  A  G  H  *  L  Y  Q  *   : G  C  *  S  S  T  *  G  A  F  *  C  C  L  G  Y  N  W  C  A  R  Y  R  E  N  G  H  *  P  F  K  E  R  W  T  L  H  D  V  T   : G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </second_frame>
            <third_frame>   T  L  S  L  N  H  S  T  I  C  I  H  F  P  Q  I  T  E  F  A  A  Q  F  L  C  K  T  M  I  R  L  R  Y  R  R  I  E  I  G  T  G  D  G  G  I  S  N  L  G  F  G  K  R  G  I  V  T  S  C  R  A  V  L  L  P  R  F  G  G  P  E  M  L  E  F  R  D  N  V  S  V  P  D  L  K  P  N  Q  V  L  V  R  A  R  A  V  S  I  N  P  L  D  T  R  :  M  R  S  G  Y  G  R  S  I  F  E  P  L  L  P  L  I  L  G  R  D  I  S  G  E  V  A  A  V  G  N  S  V  K  S  L  T  V  G  Q  D  V  F  G  A  L  H  P  T  A  V  R  G  T  Y  T  D  Y  A  I  L  A  E  D  E  L  A  P  K  P  G  S  L  S  H  V  :  E  A  S  A  I  P  F  A  A  L  T  A  W  R  A  L  K  S  T  A  R  I  R  E  G :   H  R  V  L  V  I  G  G  G  G  A  V  G  F  S  A  I  Q  L  A  V  A  A  G  C  H  V  S  T  T  C  G  G  E  S  I  S  R  I  L  A  A  G  A  E  Q  A  I  D  Y  T  S  E  :  D  A  E  V  A  L  K  G  H  F  D  A  V  L  D  T  I  G  V  P  D  T  E  R  M  G  I  S  L  L  K  K  G  G  H  Y  M  T  L  Q  :  G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47149" stop="46838"/>
                    <exon start="45409" stop="45182"/>
                    <exon start="44865" stop="44792"/>
                    <exon start="43276" stop="43117"/>
                    <exon start="42969" stop="42850"/>
                    <exon start="42739" stop="42631"/>
                    <exon start="40912" stop="40731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLSLNHSTICIHFPQITEFAAQFLCKTMIRLRYRRIEIGTGDGGISNLGFGKRGIVTSCRAVLLPRFGGPEMLEFRDNVSVPDLKPNQVLVRARAVSINPLDTRMRSGYGRSIFEPLLPLILGRDISGEVAAVGNSVKSLTVGQDVFGALHPTAVRGTYTDYAILAEDELAPKPGSLSHVEASAIPFAALTAWRALKSTARIREGHRVLVIGGGGAVGFSAIQLAVAAGCHVSTTCGGESISRILAAGAEQAIDYTSEDAEVALKGHFDAVLDTIGVPDTERMGISLLKKGGHYMTLQGEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42741" e_stop="42631"/>
            <exon e_start="40912" e_stop="40222"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.868" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42741" e_stop="42631" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.868" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42630" i_stop="40913" i_length="1718"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40912" e_stop="40222" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42741" stop="42631"/>
              <exon start="40912" stop="40350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261780" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40716" stop="40222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356236" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGGAGGCTGCATCGGTGACTGATAGGCATGGACTAGCTATTGGTCTTCCTATGGCAGCAGCCATCTTGCTGAAGAAGCAAATCCAATATCGATATTCTCATGGAATAG : AATATTGGTGGAATTATATGAGGGCTGATGCTGAGGGTTTACATGAGATACGCCGGTTATCTGAGGCTGGGAAGCTTCAACTCCCAGTAGATAAAACTTTCCCAATTTCACAGGTGAGAGAGGCTCACGAGGCCAAGGATAGACGACAAATTCCTGGCAAAGTGGTGCTAGAAATTGACTGATTTAACTGGACGATCTTAACCAACAGTGCGTGGATTCAGTGCACAAGTCTATAATATCTCATGCAATCTGGTATTACACTGAATCCTTGATGCCTATTGCCTCGTATACGATATCATCTCTTTGCAGAATAACCAGACCCAACTTACACTCTGTTGGCATCTATAGGAAGAAAACTGTGCAACCTGTAAATTCTCAGGACATTCTCAATCTTTTTTCTTTTCTTCCAAGTATCCGTCATTGTTTCTATGTTGCGTTAAACATTTAAGTGAGCCATTTATCGTGCTCGTGACAGGAAAATGCATTGCGAATGGTCGTACTATGTCACAGGGGAGATGTCTGTTATTTTTTAGAAAAAAAAGAAATAGATAATTATGTTCTGAATTTGGTTGCAATTTTCAAATTTACTTACTGGTGAATTAAGGGTGATTGCTAAATATCCAAGTATGTGTATAATTTGTCTATTTCTAAAATTGATTAGATCTAAATTTAACAAAAGTAAATTATATAT</gDNA_template>
            <first_frame> R  G  R  L  H  R  *  L  I  G  M  D  *  L  L  V  F  L  W  Q  Q  P  S  C  *  R  S  K  S  N  I  D  I  L  M  E  *  :  N  I  G  G  I  I  *  G  L  M  L  R  V  Y  M  R  Y  A  G  Y  L  R  L  G  S  F  N  S  Q  *  I  K  L  S  Q  F  H  R  *  E  R  L  T  R  P  R  I  D  D  K  F  L  A  K  W  C  *  K  L  T  D  L  T  G  R  S  *  P  T  V  R  G  F  S  A  Q  V  Y  N  I  S  C  N  L  V  L  H  *  I  L  D  A  Y  C  L  V  Y  D  I  I  S  L  Q  N  N  Q  T  Q  L  T  L  C  W  H  L  *  E  E  N  C  A  T  C  K  F  S  G  H  S  Q  S  F  F  F  S  S  K  Y  P  S  L  F  L  C  C  V  K  H  L  S  E  P  F  I  V  L  V  T  G  K  C  I  A  N  G  R  T  M  S  Q  G  R  C  L  L  F  F  R  K  K  R  N  R  *  L  C  S  E  F  G  C  N  F  Q  I  Y  L  L  V  N  *  G  *  L  L  N  I  Q  V  C  V  *  F  V  Y  F  *  N  *  L  D  L  N  L  T  K  V  N  Y  I  </first_frame>
            <second_frame>  G  G  G  C  I  G  D  *  *  A  W  T  S  Y  W  S  S  Y  G  S  S  H  L  A  E  E  A  N  P  I  S  I  F  S  W  N  R :   I  L  V  E  L  Y  E  G  *  C  *  G  F  T  *  D  T  P  V  I  *  G  W  E  A  S  T  P  S  R  *  N  F  P  N  F  T  G  E  R  G  S  R  G  Q  G  *  T  T  N  S  W  Q  S  G  A  R  N  *  L  I  *  L  D  D  L  N  Q  Q  C  V  D  S  V  H  K  S  I  I  S  H  A  I  W  Y  Y  T  E  S  L  M  P  I  A  S  Y  T  I  S  S  L  C  R  I  T  R  P  N  L  H  S  V  G  I  Y  R  K  K  T  V  Q  P  V  N  S  Q  D  I  L  N  L  F  S  F  L  P  S  I  R  H  C  F  Y  V  A  L  N  I  *  V  S  H  L  S  C  S  *  Q  E  N  A  L  R  M  V  V  L  C  H  R  G  D  V  C  Y  F  L  E  K  K  E  I  D  N  Y  V  L  N  L  V  A  I  F  K  F  T  Y  W  *  I  K  G  D  C  *  I  S  K  Y  V  Y  N  L  S  I  S  K  I  D  *  I  *  I  *  Q  K  *  I  I  Y </second_frame>
            <third_frame>   G  E  A  A  S  V  T  D  R  H  G  L  A  I  G  L  P  M  A  A  A  I  L  L  K  K  Q  I  Q  Y  R  Y  S  H  G  I   : E  Y  W  W  N  Y  M  R  A  D  A  E  G  L  H  E  I  R  R  L  S  E  A  G  K  L  Q  L  P  V  D  K  T  F  P  I  S  Q  V  R  E  A  H  E  A  K  D  R  R  Q  I  P  G  K  V  V  L  E  I  D  *  F  N  W  T  I  L  T  N  S  A  W  I  Q  C  T  S  L  *  Y  L  M  Q  S  G  I  T  L  N  P  *  C  L  L  P  R  I  R  Y  H  L  F  A  E  *  P  D  P  T  Y  T  L  L  A  S  I  G  R  K  L  C  N  L  *  I  L  R  T  F  S  I  F  F  L  F  F  Q  V  S  V  I  V  S  M  L  R  *  T  F  K  *  A  I  Y  R  A  R  D  R  K  M  H  C  E  W  S  Y  Y  V  T  G  E  M  S  V  I  F  *  K  K  K  K  *  I  I  M  F  *  I  W  L  Q  F  S  N  L  L  T  G  E  L  R  V  I  A  K  Y  P  S  M  C  I  I  C  L  F  L  K  L  I  R  S  K  F  N  K  S  K  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42739" stop="42631"/>
                    <exon start="40912" stop="40731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GEAASVTDRHGLAIGLPMAAAILLKKQIQYRYSHGIEYWWNYMRADAEGLHEIRRLSEAGKLQLPVDKTFPISQVREAHEAKDRRQIPGKVVLEID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40725" stop="40465"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDDLNQQCVDSVHKSIISHAIWYYTESLMPIASYTISSLCRITRPNLHSVGIYRKKTVQPVNSQDILNLFSFLPSIRHCFYVALNI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40564" stop="40361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENCATCKFSGHSQSFFFSSKYPSLFLCCVKHLSEPFIVLVTGKCIANGRTMSQGRCLLFFRKKRNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="48203" PGL_stop="50134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48203" e_stop="48246"/>
            <exon e_start="49676" e_stop="50134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.614"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.614">
            <gDNA_exon_boundary e_start="48203" e_stop="48246" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48247" i_stop="49675" i_length="1429"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="49676" e_stop="50134" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48203" stop="48246"/>
              <exon start="49676" stop="50134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368680" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTCTTAATCTTTGTCAATTTATATGAATTATTCTCTTTAT : ATATAACAATGATCTGCAATTTCATTAAGTAGACTATCACCACTTTTCAACTACAATCACAGTAACTCCTTGGTCCAATATTTTTTCACATGATACAAGCTCTTCTGTAGCTAGAACTTCAATCAAAATCAAATAAAAGCCCTACTGAGGAACGAATGTTGTGAGCAAAAAAAATCCAGAATTGTAATCACAACTCTAGAAAAGCGCCAACAGGAAGGCTTAGGATATATGAATCTAGTACAAAAGCTTGGCAGTTTTGCAGTGAAAAGCCACAAAAGAGATGATGTGTTCCTCCTTTCACTAGCAGAACCAGTCTTGGTTGGATCCATGTCATGATTCTTGAAACTGAATAATAAGGTCTGGCGAGCACAAAGTTCTGGCACGCCATGATAGTGTGTGTGTGAGAGAGAGAGAGAGGATCTAATTATAATTCTTCCTTTGAGCATTTCACATCCACAA</gDNA_template>
            <first_frame> F  F  L  N  L  C  Q  F  I  *  I  I  L  F  I :   Y  N  N  D  L  Q  F  H  *  V  D  Y  H  H  F  S  T  T  I  T  V  T  P  W  S  N  I  F  S  H  D  T  S  S  S  V  A  R  T  S  I  K  I  K  *  K  P  Y  *  G  T  N  V  V  S  K  K  N  P  E  L  *  S  Q  L  *  K  S  A  N  R  K  A  *  D  I  *  I  *  Y  K  S  L  A  V  L  Q  *  K  A  T  K  E  M  M  C  S  S  F  H  *  Q  N  Q  S  W  L  D  P  C  H  D  S  *  N  *  I  I  R  S  G  E  H  K  V  L  A  R  H  D  S  V  C  V  R  E  R  E  R  I  *  L  *  F  F  L  *  A  F  H  I  H   </first_frame>
            <second_frame>  F  F  L  I  F  V  N  L  Y  E  L  F  S  L   : Y  I  T  M  I  C  N  F  I  K  *  T  I  T  T  F  Q  L  Q  S  Q  *  L  L  G  P  I  F  F  H  M  I  Q  A  L  L  *  L  E  L  Q  S  K  S  N  K  S  P  T  E  E  R  M  L  *  A  K  K  I  Q  N  C  N  H  N  S  R  K  A  P  T  G  R  L  R  I  Y  E  S  S  T  K  A  W  Q  F  C  S  E  K  P  Q  K  R  *  C  V  P  P  F  T  S  R  T  S  L  G  W  I  H  V  M  I  L  E  T  E  *  *  G  L  A  S  T  K  F  W  H  A  M  I  V  C  V  *  E  R  E  R  G  S  N  Y  N  S  S  F  E  H  F  T  S  T  </second_frame>
            <third_frame>   F  S  *  S  L  S  I  Y  M  N  Y  S  L  Y  :  I  *  Q  *  S  A  I  S  L  S  R  L  S  P  L  F  N  Y  N  H  S  N  S  L  V  Q  Y  F  F  T  *  Y  K  L  F  C  S  *  N  F  N  Q  N  Q  I  K  A  L  L  R  N  E  C  C  E  Q  K  K  S  R  I  V  I  T  T  L  E  K  R  Q  Q  E  G  L  G  Y  M  N  L  V  Q  K  L  G  S  F  A  V  K  S  H  K  R  D  D  V  F  L  L  S  L  A  E  P  V  L  V  G  S  M  S  *  F  L  K  L  N  N  K  V  W  R  A  Q  S  S  G  T  P  *  *  C  V  C  E  R  E  R  E  D  L  I  I  I  L  P  L  S  I  S  H  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49790" stop="50011"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFNQNQIKALLRNECCEQKKSRIVITTLEKRQQEGLGYMNLVQKLGSFAVKSHKRDDVFLLSLAEPVLVGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="50086" PGL_stop="49680"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50086" e_stop="49680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="50086" e_stop="49680" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50086" stop="49705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50085" stop="49680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTCACACACACACTATCATGGCGTGCCAGAACTTTGTGCTCGCCAGACCTTATTATTCAGTTTCAAGAATCATGACATGGATCCAACCAAGACTGGTTCTGCTAGTGAAAGGAGGAACACATCATCTCTTTTGTGGCTTTTCACTGCAAAACTGCCAAGCTTTTGTACTAGATTCATATATCCTAAGCCTTCCTGTTGGCGCTTTTCTAGAGTTGTGATTACAATTCTGGATTTTTTTTGCTCACAACATTCGTTCCTCAGTAGGGCTTTTATTTGATTTTGATTGAAGTTCTAGCTACAGAAGAGCTTGTATCATGTGAAAAAATATTGGACCAAGGAGTTACTGTGATTGTAGTTGAAAAGTGGTGATAGTCTACTTAATGAAATTGCAGATCATTGTT</gDNA_template>
            <first_frame> L  S  L  T  H  T  L  S  W  R  A  R  T  L  C  S  P  D  L  I  I  Q  F  Q  E  S  *  H  G  S  N  Q  D  W  F  C  *  *  K  E  E  H  I  I  S  F  V  A  F  H  C  K  T  A  K  L  L  Y  *  I  H  I  S  *  A  F  L  L  A  L  F  *  S  C  D  Y  N  S  G  F  F  L  L  T  T  F  V  P  Q  *  G  F  Y  L  I  L  I  E  V  L  A  T  E  E  L  V  S  C  E  K  I  L  D  Q  G  V  T  V  I  V  V  E  K  W  *  *  S  T  *  *  N  C  R  S  L   </first_frame>
            <second_frame>  S  L  S  H  T  H  Y  H  G  V  P  E  L  C  A  R  Q  T  L  L  F  S  F  K  N  H  D  M  D  P  T  K  T  G  S  A  S  E  R  R  N  T  S  S  L  L  W  L  F  T  A  K  L  P  S  F  C  T  R  F  I  Y  P  K  P  S  C  W  R  F  S  R  V  V  I  T  I  L  D  F  F  C  S  Q  H  S  F  L  S  R  A  F  I  *  F  *  L  K  F  *  L  Q  K  S  L  Y  H  V  K  K  Y  W  T  K  E  L  L  *  L  *  L  K  S  G  D  S  L  L  N  E  I  A  D  H  C  </second_frame>
            <third_frame>   L  S  H  T  H  T  I  M  A  C  Q  N  F  V  L  A  R  P  Y  Y  S  V  S  R  I  M  T  W  I  Q  P  R  L  V  L  L  V  K  G  G  T  H  H  L  F  C  G  F  S  L  Q  N  C  Q  A  F  V  L  D  S  Y  I  L  S  L  P  V  G  A  F  L  E  L  *  L  Q  F  W  I  F  F  A  H  N  I  R  S  S  V  G  L  L  F  D  F  D  *  S  S  S  Y  R  R  A  C  I  M  *  K  N  I  G  P  R  S  Y  C  D  C  S  *  K  V  V  I  V  Y  L  M  K  L  Q  I  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50085" stop="49804"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHTHYHGVPELCARQTLLFSFKNHDMDPTKTGSASERRNTSSLLWLFTAKLPSFCTRFIYPKPSCWRFSRVVITILDFFCSQHSFLSRAFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50084" stop="49863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSHTHTIMACQNFVLARPYYSVSRIMTWIQPRLVLLVKGGTHHLFCGFSLQNCQAFVLDSYILSLPVGAFLEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="54723" PGL_stop="50274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54346" e_stop="54260"/>
            <exon e_start="52947" e_stop="52863"/>
            <exon e_start="52396" e_stop="52278"/>
            <exon e_start="51068" e_stop="50980"/>
            <exon e_start="50906" e_stop="50842"/>
            <exon e_start="50726" e_stop="50648"/>
            <exon e_start="50400" e_stop="50274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54346" e_stop="54260" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52947" e_stop="52863" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52396" e_stop="52278" e_length="119"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51068" e_stop="50980" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50906" e_stop="50842" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50726" e_stop="50648" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="50400" e_stop="50274" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54346" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52396" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54346" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52396" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAGGAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> Y  C  R  K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  I  V  G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   L  *  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52392" stop="52278"/>
                    <exon start="51068" stop="50980"/>
                    <exon start="50906" stop="50842"/>
                    <exon start="50726" stop="50648"/>
                    <exon start="50400" stop="50275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="54622" e_stop="54558"/>
            <exon e_start="54480" e_stop="54408"/>
            <exon e_start="54338" e_stop="54260"/>
            <exon e_start="52947" e_stop="52863"/>
            <exon e_start="52386" e_stop="52278"/>
            <exon e_start="51068" e_stop="50980"/>
            <exon e_start="50906" e_stop="50842"/>
            <exon e_start="50726" e_stop="50648"/>
            <exon e_start="50400" e_stop="50274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54622" e_stop="54558" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54480" e_stop="54408" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54338" e_stop="54260" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52947" e_stop="52863" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52862" i_stop="52387" i_length="476"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52386" e_stop="52278" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51068" e_stop="50980" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50906" e_stop="50842" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50726" e_stop="50648" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="50400" e_stop="50274" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54622" stop="54558"/>
              <exon start="54480" stop="54408"/>
              <exon start="54338" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52386" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54426" stop="54408"/>
              <exon start="54338" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52386" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : GTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  W :   S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54620" stop="54558"/>
                    <exon start="54480" stop="54408"/>
                    <exon start="54338" stop="54260"/>
                    <exon start="52947" stop="52863"/>
                    <exon start="52386" stop="52278"/>
                    <exon start="51068" stop="50980"/>
                    <exon start="50906" stop="50842"/>
                    <exon start="50726" stop="50648"/>
                    <exon start="50400" stop="50275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQLKNPKKQFQLNPNWAQLRQQLNSNGFQKQLSNPSETENPNSILGKRKSRPSDDSGDATPNPLTPTSSDSSVTDVIGMDCEMVGVSSVGNRSALGRVTLVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54723" e_stop="54558"/>
            <exon e_start="54480" e_stop="54408"/>
            <exon e_start="54338" e_stop="54260"/>
            <exon e_start="52947" e_stop="52863"/>
            <exon e_start="52396" e_stop="52278"/>
            <exon e_start="51068" e_stop="50980"/>
            <exon e_start="50906" e_stop="50842"/>
            <exon e_start="50726" e_stop="50648"/>
            <exon e_start="50400" e_stop="50274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="54723" e_stop="54558" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54557" i_stop="54481" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54480" e_stop="54408" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54407" i_stop="54339" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54338" e_stop="54260" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="54259" i_stop="52948" i_length="1312"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52947" e_stop="52863" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52862" i_stop="52397" i_length="466"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52396" e_stop="52278" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.940" acc_prob="0.958">
            <gDNA_intron_boundary i_start="52277" i_stop="51069" i_length="1209"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51068" e_stop="50980" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="50979" i_stop="50907" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50906" e_stop="50842" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.971">
            <gDNA_intron_boundary i_start="50841" i_stop="50727" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50726" e_stop="50648" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50647" i_stop="50401" i_length="247"/>
          </intron>
          <exon e_serial="9" e_score="0.953">
            <gDNA_exon_boundary e_start="50400" e_stop="50274" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54723" stop="54558"/>
              <exon start="54480" stop="54408"/>
              <exon start="54338" stop="54260"/>
              <exon start="52947" stop="52863"/>
              <exon start="52396" stop="52278"/>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51068" stop="50980"/>
              <exon start="50906" stop="50842"/>
              <exon start="50726" stop="50648"/>
              <exon start="50400" stop="50274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCAGGGGCATTTTAGGTCCTTCAACCCTTCACATGTTGGGAGCTTAAAGCGGATGTTAAAGTAATTGAGCCACCACGCGGAGAGGAAGACAAAAATGGCGGATCAATTGAAAAACCCTAAGAAACAGTTTCAGCTAAATCCCAACTGGGCTCAGCTCCGTCAA : CAACTCAACAGCAATGGCTTCCAAAAACAACTGTCAAATCCTTCAGAAACAGAAAATCCTAATTCCATATTAG : GAAAGCGCAAAAGCAGGCCCAGTGATGATTCCGGAGATGCTACGCCTAATCCTCTTACTCCAACTTCATCGGATTCAAG : TGTTACAGATGTGATAGGGATGGATTGTGAAATGGTTGGCGTAAGCTCTGTGGGAAACAGAAGTGCTCTTGGGCGAGTCACACTG : TTAATTGCAGGTCAACCAATGGGGAAATGTGATATATGACGAATATGTTCGTCCAGTTGAACGTGTTGTTGACTTCCGCACCAAAATCAGTGGTATTAGACCTCAGCACTTAAAGAAAG : CAAAAGATTTCCGCGTTGTTCAGAAGGAGGTGGCAGAACTAATAAAGGGACGGATTCTTGTTGGCCATGCTCTGCGAAATGATTTTAAG : GCCTTGTTATTAGGCCATCAAAAGCAGGATATTCGTGACACTTCTGAATATAAGCATTTTCTAAG : GGAAGGACGCAGTCGTGCACTACGGAACCTTGCTACTGAAGTCCTTGGAGTGGAGATACAAAATGGAGAGCATTGCCCA : ATAGAGGATGCCCGTGCTGCTATGATGCTTTACCTAAAGCACAGAAAAGAATGGGAAAAGAGCATCAAGGACTTTGCAAGACTGAAGGAGAAACAGAAAAAGCGTAAACCAAAGAAAAAAAAGAGGA</gDNA_template>
            <first_frame> I  A  G  A  F  *  V  L  Q  P  F  T  C  W  E  L  K  A  D  V  K  V  I  E  P  P  R  G  E  E  D  K  N  G  G  S  I  E  K  P  *  E  T  V  S  A  K  S  Q  L  G  S  A  P  S   : T  T  Q  Q  Q  W  L  P  K  T  T  V  K  S  F  R  N  R  K  S  *  F  H  I  R :   K  A  Q  K  Q  A  Q  *  *  F  R  R  C  Y  A  *  S  S  Y  S  N  F  I  G  F  K  :  C  Y  R  C  D  R  D  G  L  *  N  G  W  R  K  L  C  G  K  Q  K  C  S  W  A  S  H  T   : V  N  C  R  S  T  N  G  E  M  *  Y  M  T  N  M  F  V  Q  L  N  V  L  L  T  S  A  P  K  S  V  V  L  D  L  S  T  *  R  K  :  Q  K  I  S  A  L  F  R  R  R  W  Q  N  *  *  R  D  G  F  L  L  A  M  L  C  E  M  I  L  R :   P  C  Y  *  A  I  K  S  R  I  F  V  T  L  L  N  I  S  I  F  *   : G  K  D  A  V  V  H  Y  G  T  L  L  L  K  S  L  E  W  R  Y  K  M  E  S  I  A  Q :   *  R  M  P  V  L  L  *  C  F  T  *  S  T  E  K  N  G  K  R  A  S  R  T  L  Q  D  *  R  R  N  R  K  S  V  N  Q  R  K  K  R  G </first_frame>
            <second_frame>  *  Q  G  H  F  R  S  F  N  P  S  H  V  G  S  L  K  R  M  L  K  *  L  S  H  H  A  E  R  K  T  K  M  A  D  Q  L  K  N  P  K  K  Q  F  Q  L  N  P  N  W  A  Q  L  R  Q  :  Q  L  N  S  N  G  F  Q  K  Q  L  S  N  P  S  E  T  E  N  P  N  S  I  L   : G  K  R  K  S  R  P  S  D  D  S  G  D  A  T  P  N  P  L  T  P  T  S  S  D  S  S :   V  T  D  V  I  G  M  D  C  E  M  V  G  V  S  S  V  G  N  R  S  A  L  G  R  V  T  L  :  L  I  A  G  Q  P  M  G  K  C  D  I  *  R  I  C  S  S  S  *  T  C  C  *  L  P  H  Q  N  Q  W  Y  *  T  S  A  L  K  E  S :   K  R  F  P  R  C  S  E  G  G  G  R  T  N  K  G  T  D  S  C  W  P  C  S  A  K  *  F  *   : G  L  V  I  R  P  S  K  A  G  Y  S  *  H  F  *  I  *  A  F  S  K  :  G  R  T  Q  S  C  T  T  E  P  C  Y  *  S  P  W  S  G  D  T  K  W  R  A  L  P   : N  R  G  C  P  C  C  Y  D  A  L  P  K  A  Q  K  R  M  G  K  E  H  Q  G  L  C  K  T  E  G  E  T  E  K  A  *  T  K  E  K  K  E   </second_frame>
            <third_frame>   S  R  G  I  L  G  P  S  T  L  H  M  L  G  A  *  S  G  C  *  S  N  *  A  T  T  R  R  G  R  Q  K  W  R  I  N  *  K  T  L  R  N  S  F  S  *  I  P  T  G  L  S  S  V  N :   N  S  T  A  M  A  S  K  N  N  C  Q  I  L  Q  K  Q  K  I  L  I  P  Y  *  :  E  S  A  K  A  G  P  V  M  I  P  E  M  L  R  L  I  L  L  L  Q  L  H  R  I  Q   : V  L  Q  M  *  *  G  W  I  V  K  W  L  A  *  A  L  W  E  T  E  V  L  L  G  E  S  H  C :   *  L  Q  V  N  Q  W  G  N  V  I  Y  D  E  Y  V  R  P  V  E  R  V  V  D  F  R  T  K  I  S  G  I  R  P  Q  H  L  K  K   : A  K  D  F  R  V  V  Q  K  E  V  A  E  L  I  K  G  R  I  L  V  G  H  A  L  R  N  D  F  K  :  A  L  L  L  G  H  Q  K  Q  D  I  R  D  T  S  E  Y  K  H  F  L  R :   E  G  R  S  R  A  L  R  N  L  A  T  E  V  L  G  V  E  I  Q  N  G  E  H  C  P  :  I  E  D  A  R  A  A  M  M  L  Y  L  K  H  R  K  E  W  E  K  S  I  K  D  F  A  R  L  K  E  K  Q  K  K  R  K  P  K  K  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52392" stop="52278"/>
                    <exon start="51068" stop="50980"/>
                    <exon start="50906" stop="50842"/>
                    <exon start="50726" stop="50648"/>
                    <exon start="50400" stop="50275"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVNQWGNVIYDEYVRPVERVVDFRTKISGIRPQHLKKAKDFRVVQKEVAELIKGRILVGHALRNDFKALLLGHQKQDIRDTSEYKHFLREGRSRALRNLATEVLGVEIQNGEHCPIEDARAAMMLYLKHRKEWEKSIKDFARLKEKQKKRKPKKKKR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="59473" PGL_stop="59027"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59473" e_stop="59027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="59473" e_stop="59027" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59473" stop="59152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59473" stop="59183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59472" stop="59027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACATTATATACACTTCTGTTGTATAAAGCTAGATAAAATTGTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTAGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACATGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTTCTAACGTTTGGTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  H  Y  I  H  F  C  C  I  K  L  D  K  I  V  F  H  C  N  C  I  I  R  N  C  I  I  S  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  M  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  N  V  W  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  I  I  Y  T  S  V  V  *  S  *  I  K  L  Y  F  T  A  I  V  *  F  A  I  V  *  L  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  *  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  F  L  T  F  G  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  L  Y  T  L  L  L  Y  K  A  R  *  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  *  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  F  *  R  L  V  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="77064" PGL_stop="80086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77064" e_stop="77364"/>
            <exon e_start="79396" e_stop="80086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77064" e_stop="77364" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77365" i_stop="79395" i_length="2031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79396" e_stop="80086" e_length="691"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77064" stop="77364"/>
              <exon start="79396" stop="79943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77364"/>
              <exon start="79396" stop="79764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77083" stop="77364"/>
              <exon start="79396" stop="79688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77084" stop="77364"/>
              <exon start="79396" stop="80027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77137" stop="77364"/>
              <exon start="79396" stop="79578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77149" stop="77364"/>
              <exon start="79396" stop="79748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77249" stop="77364"/>
              <exon start="79396" stop="80040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79637" stop="80061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79682" stop="80061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79701" stop="80086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240449" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGTTTTCCTTCTTAGAACTCTCAGCTATCTCCTTAAGTAAACCAAAATAGTTGATTTTGTTGAATTAATCGCAGATGGCAGGTGGGTATAGAGCTGAGGATGATTACGATTATCTGTTCAAGTTGGTGTTAATTGGAGATTCTGGTGTAGGAAAATCCAATCTCCTTTCTCGATTCTCAAGAAACGAGTTCAATCTTGAATCAAAGTCTACTATTGGTGTTGAATTTGCTACCCGTAGCATTAAGGTAGATGATAAGATCGTTAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAG : GTATCGTGCAATTACAAGTGCATACTACAGAGGGGCTGTCGGTGCATTAGTTGTCTACGATATCACTCGACATGTCACATTTGAAAATGTTGAGAGATGGTTAAAAGAACTTCGAGACCATACCGACCAAAATATAGTCATAATGCTCGTTGGGAACAAGGCCGACTTACGTCACTTGCGTGCTGTTTCAACAGAGGATGCCAAGGCCTTTGCTGAAAGAGAGAGTACCTTCTATATGGAGACTTCAGCACTTGAATCCTTGAACGTTGAGAATGCGTTTACAGAAGTACTGACAGAGATATACAGGGTGGTCTGTCGGAAAGCACTCGAAGTTGGGGATGATCCTACTGCGTTGCCGAAGGGGCAAACTATAAATGTTGGCAAGGATGATGTTTCAGCTGTGAAAAAAGTTGGTTGCTGCTCTGTGTAAGCTAAAAAAATCAAGAAATCGGTGAAGTTAAACTTTCAAATGGCTTCTCCTATAGTTGCATTGAGTATTCTCAGTTTTGAATATCTTAGGAATTATTCCACCTCTGTATTGTTTCATTAACTTACCTTTAGTTTGTACTTTGTACCCTATTTTGCTAGTCTTTTGACTCTTTGTAAAAGAGTTTTACTATTATTTATATACTTTTACATTATATTATTATTTTGTATGTTTATGGCATCTTATGAGTTTAAATAGAGAAAC</gDNA_template>
            <first_frame> I  C  F  P  S  *  N  S  Q  L  S  P  *  V  N  Q  N  S  *  F  C  *  I  N  R  R  W  Q  V  G  I  E  L  R  M  I  T  I  I  C  S  S  W  C  *  L  E  I  L  V  *  E  N  P  I  S  F  L  D  S  Q  E  T  S  S  I  L  N  Q  S  L  L  L  V  L  N  L  L  P  V  A  L  R  *  M  I  R  S  L  R  L  R  F  G  I  L  L  D  K  K   : G  I  V  Q  L  Q  V  H  T  T  E  G  L  S  V  H  *  L  S  T  I  S  L  D  M  S  H  L  K  M  L  R  D  G  *  K  N  F  E  T  I  P  T  K  I  *  S  *  C  S  L  G  T  R  P  T  Y  V  T  C  V  L  F  Q  Q  R  M  P  R  P  L  L  K  E  R  V  P  S  I  W  R  L  Q  H  L  N  P  *  T  L  R  M  R  L  Q  K  Y  *  Q  R  Y  T  G  W  S  V  G  K  H  S  K  L  G  M  I  L  L  R  C  R  R  G  K  L  *  M  L  A  R  M  M  F  Q  L  *  K  K  L  V  A  A  L  C  K  L  K  K  S  R  N  R  *  S  *  T  F  K  W  L  L  L  *  L  H  *  V  F  S  V  L  N  I  L  G  I  I  P  P  L  Y  C  F  I  N  L  P  L  V  C  T  L  Y  P  I  L  L  V  F  *  L  F  V  K  E  F  Y  Y  Y  L  Y  T  F  T  L  Y  Y  Y  F  V  C  L  W  H  L  M  S  L  N  R  E   </first_frame>
            <second_frame>  F  V  F  L  L  R  T  L  S  Y  L  L  K  *  T  K  I  V  D  F  V  E  L  I  A  D  G  R  W  V  *  S  *  G  *  L  R  L  S  V  Q  V  G  V  N  W  R  F  W  C  R  K  I  Q  S  P  F  S  I  L  K  K  R  V  Q  S  *  I  K  V  Y  Y  W  C  *  I  C  Y  P  *  H  *  G  R  *  *  D  R  *  G  S  D  L  G  Y  C  W  T  R  K  :  V  S  C  N  Y  K  C  I  L  Q  R  G  C  R  C  I  S  C  L  R  Y  H  S  T  C  H  I  *  K  C  *  E  M  V  K  R  T  S  R  P  Y  R  P  K  Y  S  H  N  A  R  W  E  Q  G  R  L  T  S  L  A  C  C  F  N  R  G  C  Q  G  L  C  *  K  R  E  Y  L  L  Y  G  D  F  S  T  *  I  L  E  R  *  E  C  V  Y  R  S  T  D  R  D  I  Q  G  G  L  S  E  S  T  R  S  W  G  *  S  Y  C  V  A  E  G  A  N  Y  K  C  W  Q  G  *  C  F  S  C  E  K  S  W  L  L  L  C  V  S  *  K  N  Q  E  I  G  E  V  K  L  S  N  G  F  S  Y  S  C  I  E  Y  S  Q  F  *  I  S  *  E  L  F  H  L  C  I  V  S  L  T  Y  L  *  F  V  L  C  T  L  F  C  *  S  F  D  S  L  *  K  S  F  T  I  I  Y  I  L  L  H  Y  I  I  I  L  Y  V  Y  G  I  L  *  V  *  I  E  K  </second_frame>
            <third_frame>   L  F  S  F  L  E  L  S  A  I  S  L  S  K  P  K  *  L  I  L  L  N  *  S  Q  M  A  G  G  Y  R  A  E  D  D  Y  D  Y  L  F  K  L  V  L  I  G  D  S  G  V  G  K  S  N  L  L  S  R  F  S  R  N  E  F  N  L  E  S  K  S  T  I  G  V  E  F  A  T  R  S  I  K  V  D  D  K  I  V  K  A  Q  I  W  D  T  A  G  Q  E  R :   Y  R  A  I  T  S  A  Y  Y  R  G  A  V  G  A  L  V  V  Y  D  I  T  R  H  V  T  F  E  N  V  E  R  W  L  K  E  L  R  D  H  T  D  Q  N  I  V  I  M  L  V  G  N  K  A  D  L  R  H  L  R  A  V  S  T  E  D  A  K  A  F  A  E  R  E  S  T  F  Y  M  E  T  S  A  L  E  S  L  N  V  E  N  A  F  T  E  V  L  T  E  I  Y  R  V  V  C  R  K  A  L  E  V  G  D  D  P  T  A  L  P  K  G  Q  T  I  N  V  G  K  D  D  V  S  A  V  K  K  V  G  C  C  S  V  *  A  K  K  I  K  K  S  V  K  L  N  F  Q  M  A  S  P  I  V  A  L  S  I  L  S  F  E  Y  L  R  N  Y  S  T  S  V  L  F  H  *  L  T  F  S  L  Y  F  V  P  Y  F  A  S  L  L  T  L  C  K  R  V  L  L  L  F  I  Y  F  Y  I  I  L  L  F  C  M  F  M  A  S  Y  E  F  K  *  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77135" stop="77364"/>
                    <exon start="79396" stop="79825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQMAGGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIKVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERESTFYMETSALESLNVENAFTEVLTEIYRVVCRKALEVGDDPTALPKGQTINVGKDDVSAVKKVGCCSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83276" PGL_stop="81098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83276" e_stop="83221"/>
            <exon e_start="83091" e_stop="82993"/>
            <exon e_start="82815" e_stop="82648"/>
            <exon e_start="81323" e_stop="81098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83276" e_stop="83221" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83220" i_stop="83092" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83091" e_stop="82993" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82992" i_stop="82816" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82815" e_stop="82648" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="82647" i_stop="81324" i_length="1324"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="81323" e_stop="81098" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83276" stop="83221"/>
              <exon start="83091" stop="82993"/>
              <exon start="82815" stop="82648"/>
              <exon start="81323" stop="81098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAAAGAAATACTAGACATCAGAACCTTCCTAACATGAGAGTTCTGCCAGAAGAC : GGAGTGGCAATGCTGGATGTTTCGGGCTACCATGAAGTTAACAATCCCATTGATCAGCACAGAGATATGCGTTTAGACGTAGATCACATGTCCTACGAG : GAGCTTCTTGCACTGGGGGAGCAGATTGGCAATGTAACAACTGGATTGTCAGATGAAATAATCGTTAACCGCTTGAAAACAAGATCATTTTCGCCCCCCGTTATTCCTTGCACCCTGGAAACTGCTGCATGTTTGGATCACGAAGCTGATTTCTGTGTCATATGCCAG : ACTGACTACAACAAGCAAGAAACTATAGGAACTCTTGATTGCGGGCACGAATATCATGCAGAATGCGTAAAGAAGTGGTTGGTTGTGAAGAACACTTGCCCTATCTGCAAATCCACCGGATTGTCAATAGAAAGAAAAGATTTGTGAAAACAGGGAGTTGGTTGGTTGGTGGATGAATAATTATAAGAGTGGGACATTTTGTTCTCTTGTTAAATATTTGTTCTCT</gDNA_template>
            <first_frame> L  K  E  I  L  D  I  R  T  F  L  T  *  E  F  C  Q  K  T :   E  W  Q  C  W  M  F  R  A  T  M  K  L  T  I  P  L  I  S  T  E  I  C  V  *  T  *  I  T  C  P  T  R :   S  F  L  H  W  G  S  R  L  A  M  *  Q  L  D  C  Q  M  K  *  S  L  T  A  *  K  Q  D  H  F  R  P  P  L  F  L  A  P  W  K  L  L  H  V  W  I  T  K  L  I  S  V  S  Y  A  R :   L  T  T  T  S  K  K  L  *  E  L  L  I  A  G  T  N  I  M  Q  N  A  *  R  S  G  W  L  *  R  T  L  A  L  S  A  N  P  P  D  C  Q  *  K  E  K  I  C  E  N  R  E  L  V  G  W  W  M  N  N  Y  K  S  G  T  F  C  S  L  V  K  Y  L  F  S </first_frame>
            <second_frame>  *  K  K  Y  *  T  S  E  P  S  *  H  E  S  S  A  R  R   : R  S  G  N  A  G  C  F  G  L  P  *  S  *  Q  S  H  *  S  A  Q  R  Y  A  F  R  R  R  S  H  V  L  R   : G  A  S  C  T  G  G  A  D  W  Q  C  N  N  W  I  V  R  *  N  N  R  *  P  L  E  N  K  I  I  F  A  P  R  Y  S  L  H  P  G  N  C  C  M  F  G  S  R  S  *  F  L  C  H  M  P   : D  *  L  Q  Q  A  R  N  Y  R  N  S  *  L  R  A  R  I  S  C  R  M  R  K  E  V  V  G  C  E  E  H  L  P  Y  L  Q  I  H  R  I  V  N  R  K  K  R  F  V  K  T  G  S  W  L  V  G  G  *  I  I  I  R  V  G  H  F  V  L  L  L  N  I  C  S   </second_frame>
            <third_frame>   E  R  N  T  R  H  Q  N  L  P  N  M  R  V  L  P  E  D  :  G  V  A  M  L  D  V  S  G  Y  H  E  V  N  N  P  I  D  Q  H  R  D  M  R  L  D  V  D  H  M  S  Y  E  :  E  L  L  A  L  G  E  Q  I  G  N  V  T  T  G  L  S  D  E  I  I  V  N  R  L  K  T  R  S  F  S  P  P  V  I  P  C  T  L  E  T  A  A  C  L  D  H  E  A  D  F  C  V  I  C  Q  :  T  D  Y  N  K  Q  E  T  I  G  T  L  D  C  G  H  E  Y  H  A  E  C  V  K  K  W  L  V  V  K  N  T  C  P  I  C  K  S  T  G  L  S  I  E  R  K  D  L  *  K  Q  G  V  G  W  L  V  D  E  *  L  *  E  W  D  I  L  F  S  C  *  I  F  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83274" stop="83221"/>
                    <exon start="83091" stop="82993"/>
                    <exon start="82815" stop="82648"/>
                    <exon start="81323" stop="81177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERNTRHQNLPNMRVLPEDGVAMLDVSGYHEVNNPIDQHRDMRLDVDHMSYEELLALGEQIGNVTTGLSDEIIVNRLKTRSFSPPVIPCTLETAACLDHEADFCVICQTDYNKQETIGTLDCGHEYHAECVKKWLVVKNTCPICKSTGLSIERKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="86808" PGL_stop="84310"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86808" e_stop="86652"/>
            <exon e_start="86395" e_stop="86313"/>
            <exon e_start="84854" e_stop="84310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.788" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86808" e_stop="86652" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.987">
            <gDNA_intron_boundary i_start="86651" i_stop="86396" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86395" e_stop="86313" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.788">
            <gDNA_intron_boundary i_start="86312" i_stop="84855" i_length="1458"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="84854" e_stop="84310" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86808" stop="86652"/>
              <exon start="86395" stop="86313"/>
              <exon start="84854" stop="84418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86808" stop="86652"/>
              <exon start="86395" stop="86313"/>
              <exon start="84854" stop="84429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86732" stop="86652"/>
              <exon start="86395" stop="86313"/>
              <exon start="84854" stop="84310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86732" stop="86652"/>
              <exon start="86395" stop="86313"/>
              <exon start="84854" stop="84643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAAGAAAAATAACGTGGCCAATTAATAGGAGAATCAAACAGCCAATTAGCAGTTAACCGTAAAATTTCCACTTTTCCATTGAAACCTCTCTTCAATTATCGCTTTGCCCTTTTTGCTTCTTTGATCCATCGATCGTCTGATCAACCTTTAATTG : GTGTTTTTAAACTGAGCATTTTTGTGCCTTTTATGTTTAAAGGCAACAATCAAGGAAGAAGTTGATATTTGGATGATAAAAAG : GAATCACCCCACAACATTGTAACCACGAAGATAGGCTAAAGGAGCATGTCACACAGTAATCGCATAATTGATATGGAAGCAGATCAGCAAGGTCAAGAGTTTTTTCATTCAGCACCTTGCATGTTTTACGGGAGCATAGCGGCTTTACCACAGCCTACTGTCCATGCAGTAGTACCAGCTCCCGTAAATGCTGGTAATATATATTTGCACCATGTATCAGATCATCAAGAGGGTCCCTTAACGTATGGCTTGACACAGTTCAATGGGATTCAACATCAGCATCCTGCCAGCAATCCTGACCTAGCTATTTCTGCTTCAAATCATTACAATCCTTACATGGCTGTTCCATCCGCTTCTGGAGATTTCCCTATTCCAGTAAATCACGGGCCACTTGATCGGCTTCATACAAGTTCTCACAACATCTTTGGAATGAATTCAGATTACGGAAGGAACAATCATTATATGGACGATGTCAGAGGCTCATATAAGAGAAAGAATGCTGAAGGAATTCCTGCAAATCTTCAATATCATCATGCTTTGGCAGG</gDNA_template>
            <first_frame> L  Q  E  K  *  R  G  Q  L  I  G  E  S  N  S  Q  L  A  V  N  R  K  I  S  T  F  P  L  K  P  L  F  N  Y  R  F  A  L  F  A  S  L  I  H  R  S  S  D  Q  P  L  I   : G  V  F  K  L  S  I  F  V  P  F  M  F  K  G  N  N  Q  G  R  S  *  Y  L  D  D  K  K  :  E  S  P  H  N  I  V  T  T  K  I  G  *  R  S  M  S  H  S  N  R  I  I  D  M  E  A  D  Q  Q  G  Q  E  F  F  H  S  A  P  C  M  F  Y  G  S  I  A  A  L  P  Q  P  T  V  H  A  V  V  P  A  P  V  N  A  G  N  I  Y  L  H  H  V  S  D  H  Q  E  G  P  L  T  Y  G  L  T  Q  F  N  G  I  Q  H  Q  H  P  A  S  N  P  D  L  A  I  S  A  S  N  H  Y  N  P  Y  M  A  V  P  S  A  S  G  D  F  P  I  P  V  N  H  G  P  L  D  R  L  H  T  S  S  H  N  I  F  G  M  N  S  D  Y  G  R  N  N  H  Y  M  D  D  V  R  G  S  Y  K  R  K  N  A  E  G  I  P  A  N  L  Q  Y  H  H  A  L  A   </first_frame>
            <second_frame>  Y  K  K  N  N  V  A  N  *  *  E  N  Q  T  A  N  *  Q  L  T  V  K  F  P  L  F  H  *  N  L  S  S  I  I  A  L  P  F  L  L  L  *  S  I  D  R  L  I  N  L  *  L  :  V  F  L  N  *  A  F  L  C  L  L  C  L  K  A  T  I  K  E  E  V  D  I  W  M  I  K  R :   N  H  P  T  T  L  *  P  R  R  *  A  K  G  A  C  H  T  V  I  A  *  L  I  W  K  Q  I  S  K  V  K  S  F  F  I  Q  H  L  A  C  F  T  G  A  *  R  L  Y  H  S  L  L  S  M  Q  *  Y  Q  L  P  *  M  L  V  I  Y  I  C  T  M  Y  Q  I  I  K  R  V  P  *  R  M  A  *  H  S  S  M  G  F  N  I  S  I  L  P  A  I  L  T  *  L  F  L  L  Q  I  I  T  I  L  T  W  L  F  H  P  L  L  E  I  S  L  F  Q  *  I  T  G  H  L  I  G  F  I  Q  V  L  T  T  S  L  E  *  I  Q  I  T  E  G  T  I  I  I  W  T  M  S  E  A  H  I  R  E  R  M  L  K  E  F  L  Q  I  F  N  I  I  M  L  W  Q  </second_frame>
            <third_frame>   T  R  K  I  T  W  P  I  N  R  R  I  K  Q  P  I  S  S  *  P  *  N  F  H  F  S  I  E  T  S  L  Q  L  S  L  C  P  F  C  F  F  D  P  S  I  V  *  S  T  F  N  W :   C  F  *  T  E  H  F  C  A  F  Y  V  *  R  Q  Q  S  R  K  K  L  I  F  G  *  *  K   : G  I  T  P  Q  H  C  N  H  E  D  R  L  K  E  H  V  T  Q  *  S  H  N  *  Y  G  S  R  S  A  R  S  R  V  F  S  F  S  T  L  H  V  L  R  E  H  S  G  F  T  T  A  Y  C  P  C  S  S  T  S  S  R  K  C  W  *  Y  I  F  A  P  C  I  R  S  S  R  G  S  L  N  V  W  L  D  T  V  Q  W  D  S  T  S  A  S  C  Q  Q  S  *  P  S  Y  F  C  F  K  S  L  Q  S  L  H  G  C  S  I  R  F  W  R  F  P  Y  S  S  K  S  R  A  T  *  S  A  S  Y  K  F  S  Q  H  L  W  N  E  F  R  L  R  K  E  Q  S  L  Y  G  R  C  Q  R  L  I  *  E  K  E  C  *  R  N  S  C  K  S  S  I  S  S  C  F  G  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84815" stop="84312"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSMSHSNRIIDMEADQQGQEFFHSAPCMFYGSIAALPQPTVHAVVPAPVNAGNIYLHHVSDHQEGPLTYGLTQFNGIQHQHPASNPDLAISASNHYNPYMAVPSASGDFPIPVNHGPLDRLHTSSHNIFGMNSDYGRNNHYMDDVRGSYKRKNAEGIPANLQYHHALA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86793" stop="86652"/>
                    <exon start="86395" stop="86331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQLIGESNSQLAVNRKISTFPLKPLFNYRFALFASLIHRSSDQPLIGVFKLSIFVPFMFKGNNQGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86214" e_stop="85451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="86214" e_stop="85451" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86214" stop="85451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86213" stop="85724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGATTATGTTCTTTTATGTGTCTTGCTTGGGTGTATGCCTGTCTAGTTTGGTTTTCCTTTTCTGGTGTTTGGGAAATAATCAACTCAATTGGAATGTTTTGATTTATATGTGTGTATGCATCCTGTTACTAAGTTGGCTTGAGAGAGGTGATTAGATAGGACATGACGCAGTTTCAGCTTACCGAGGACATGATAGGAGAGTGTGGAGGACATGGATTATGACAGAAGGTTGGTAGGTAGCAGTGCGCTGTCTTGTTGTCCGTACATATTAGTAGTTGTAGTATTGCTCCTGTAGTTTCTTGTTCTTCCACTTCTTTACTGTTTGTTGATTTCTTGTATCTCAATTATTGTTTTGTTTTGTTGTAGTTTTTGTTCTGTTTCGATATGTTGTTTCTTGTACTTCCGTTACTTCTTTCGTTGGACTGCATTGGACTGTTTCCATTGAGACGAGGATCTATCAGGAAGAACCTTTCTATCTCTTAGGTTGGGTAAGGTTTGAGTACTCTCTACCCTCTCCAGTTTGTTTATTAATCGTTGTTGTTGTTGTCGTGTAATTTCTAGGTAGTGTTTTTTCATGAGCATCAAACATTTGAATGAAAACTGTGTAATTTGTCTTGCCTCCTCGGGTAACCAAACATGACATAAGTTAATCTCGAAGTCTTAATGAGGGTTGGTGTTGTTTTAAAAAAACACACAACTAAAATCAAGATTTTATTTGGTGTGTTCCCAACTTGAAAATTTGCATCCGGGTTTGTCAATCT</gDNA_template>
            <first_frame> G  R  L  C  S  F  M  C  L  A  W  V  Y  A  C  L  V  W  F  S  F  S  G  V  W  E  I  I  N  S  I  G  M  F  *  F  I  C  V  Y  A  S  C  Y  *  V  G  L  R  E  V  I  R  *  D  M  T  Q  F  Q  L  T  E  D  M  I  G  E  C  G  G  H  G  L  *  Q  K  V  G  R  *  Q  C  A  V  L  L  S  V  H  I  S  S  C  S  I  A  P  V  V  S  C  S  S  T  S  L  L  F  V  D  F  L  Y  L  N  Y  C  F  V  L  L  *  F  L  F  C  F  D  M  L  F  L  V  L  P  L  L  L  S  L  D  C  I  G  L  F  P  L  R  R  G  S  I  R  K  N  L  S  I  S  *  V  G  *  G  L  S  T  L  Y  P  L  Q  F  V  Y  *  S  L  L  L  L  S  C  N  F  *  V  V  F  F  H  E  H  Q  T  F  E  *  K  L  C  N  L  S  C  L  L  G  *  P  N  M  T  *  V  N  L  E  V  L  M  R  V  G  V  V  L  K  K  H  T  T  K  I  K  I  L  F  G  V  F  P  T  *  K  F  A  S  G  F  V  N   </first_frame>
            <second_frame>  E  D  Y  V  L  L  C  V  L  L  G  C  M  P  V  *  F  G  F  P  F  L  V  F  G  K  *  S  T  Q  L  E  C  F  D  L  Y  V  C  M  H  P  V  T  K  L  A  *  E  R  *  L  D  R  T  *  R  S  F  S  L  P  R  T  *  *  E  S  V  E  D  M  D  Y  D  R  R  L  V  G  S  S  A  L  S  C  C  P  Y  I  L  V  V  V  V  L  L  L  *  F  L  V  L  P  L  L  Y  C  L  L  I  S  C  I  S  I  I  V  L  F  C  C  S  F  C  S  V  S  I  C  C  F  L  Y  F  R  Y  F  F  R  W  T  A  L  D  C  F  H  *  D  E  D  L  S  G  R  T  F  L  S  L  R  L  G  K  V  *  V  L  S  T  L  S  S  L  F  I  N  R  C  C  C  C  R  V  I  S  R  *  C  F  F  M  S  I  K  H  L  N  E  N  C  V  I  C  L  A  S  S  G  N  Q  T  *  H  K  L  I  S  K  S  *  *  G  L  V  L  F  *  K  N  T  Q  L  K  S  R  F  Y  L  V  C  S  Q  L  E  N  L  H  P  G  L  S  I  </second_frame>
            <third_frame>   K  I  M  F  F  Y  V  S  C  L  G  V  C  L  S  S  L  V  F  L  F  W  C  L  G  N  N  Q  L  N  W  N  V  L  I  Y  M  C  V  C  I  L  L  L  S  W  L  E  R  G  D  *  I  G  H  D  A  V  S  A  Y  R  G  H  D  R  R  V  W  R  T  W  I  M  T  E  G  W  *  V  A  V  R  C  L  V  V  R  T  Y  *  *  L  *  Y  C  S  C  S  F  L  F  F  H  F  F  T  V  C  *  F  L  V  S  Q  L  L  F  C  F  V  V  V  F  V  L  F  R  Y  V  V  S  C  T  S  V  T  S  F  V  G  L  H  W  T  V  S  I  E  T  R  I  Y  Q  E  E  P  F  Y  L  L  G  W  V  R  F  E  Y  S  L  P  S  P  V  C  L  L  I  V  V  V  V  V  V  *  F  L  G  S  V  F  S  *  A  S  N  I  *  M  K  T  V  *  F  V  L  P  P  R  V  T  K  H  D  I  S  *  S  R  S  L  N  E  G  W  C  C  F  K  K  T  H  N  *  N  Q  D  F  I  W  C  V  P  N  L  K  I  C  I  R  V  C  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0149G24.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85882" stop="85658"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVSQLLFCFVVVFVLFRYVVSCTSVTSFVGLHWTVSIETRIYQEEPFYLLGWVRFEYSLPSPVCLLIVVVVVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="85924" PGL_stop="86158"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85924" e_stop="86158"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="85924" e_stop="86158" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85924" stop="86158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAATACTACAACTACTAATATGTACGGACAACAAGACAGCGCACTGCTACCTACCAACCTTCTGTCATAATCCATGTCCTCCACACTCTCCTATCATGTCCTCGGTAAGCTGAAACTGCGTCATGTCCTATCTAATCACCTCTCTCAAGCCAACTTAGTAACAGGATGCATACACACATATAAATCAAAACATTCCAATTGAGTTGATTATTTCCCAAACACCAGAAAAGGAA</gDNA_template>
            <first_frame> S  N  T  T  T  T  N  M  Y  G  Q  Q  D  S  A  L  L  P  T  N  L  L  S  *  S  M  S  S  T  L  S  Y  H  V  L  G  K  L  K  L  R  H  V  L  S  N  H  L  S  Q  A  N  L  V  T  G  C  I  H  T  Y  K  S  K  H  S  N  *  V  D  Y  F  P  N  T  R  K  G  </first_frame>
            <second_frame>  A  I  L  Q  L  L  I  C  T  D  N  K  T  A  H  C  Y  L  P  T  F  C  H  N  P  C  P  P  H  S  P  I  M  S  S  V  S  *  N  C  V  M  S  Y  L  I  T  S  L  K  P  T  *  *  Q  D  A  Y  T  H  I  N  Q  N  I  P  I  E  L  I  I  S  Q  T  P  E  K  E </second_frame>
            <third_frame>   Q  Y  Y  N  Y  *  Y  V  R  T  T  R  Q  R  T  A  T  Y  Q  P  S  V  I  I  H  V  L  H  T  L  L  S  C  P  R  *  A  E  T  A  S  C  P  I  *  S  P  L  S  S  Q  L  S  N  R  M  H  T  H  I  *  I  K  T  F  Q  L  S  *  L  F  P  K  H  Q  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0149G24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 134 chains have been computed
$ 
$ memory statistics:
$ 213136 bytes spliced alignments in total
$ 94 spliced alignments have been stored
$ 2267 bytes was the average size of a spliced alignment
$ 25552 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1597 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 151 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 13:44:59
-->
