<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 01:07:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261497" ref_strand="+" ref_description="SGN-E261497 [cLEG-57-K15]">
      <seq>aaacttaactaagaagctgtattattctatagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctgaaaagcacatgaattcgtatttgtgagtgcagaagttttgatacttttcctttgaattggtagaagaaacaatggcatgtacaactgaatcaagattcttgatttcattttctaattttatataagtttgtcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165" g_stop="362" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3444" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="814" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E261497" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGC</genome_strand>
        <mrna_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAG-AAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254398" ref_strand="+" ref_description="SGN-E254398 [cLEG-27-G16]">
      <seq>aaacttaactaagaagctgtattattctatagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccttttctgttatctcttctgaaagcacatgaattcgtatttgtgagtgcagaagttttgatactttttctttgaattggtagaagaaacaatggcatgtacaactgaatcaagattcttgatttcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165" g_stop="362" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3419" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="788" r_length="265" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E254398" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCT</genome_strand>
        <mrna_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCTTTTCTGTTATCTCTTCTG-AAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTTCTTTGAATTGGTAGAAG-AAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252605" ref_strand="+" ref_description="SGN-E252605 [cLEG-20-O4]">
      <seq>aaacttaactaagaagctgtattattctatagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaagctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaagcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgaaggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaagcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctgaaaagcacatgaattcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165" g_stop="362" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3326" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="697" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E252605" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATT</genome_strand>
        <mrna_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAAGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAAGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAAGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAAGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255423" ref_strand="+" ref_description="SGN-E255423 [cLEG-30-L16]">
      <seq>aaacttaactaagaagctgtattattctatagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165" g_stop="362" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3184" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="555" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E255423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACT</genome_strand>
        <mrna_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368193" ref_strand="+" ref_description="SGN-E368193 [TUS-26-A14]">
      <seq>aaacttaactaagaagctgtattattctatagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattactcaagatggagttattggcattggcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165" g_stop="362" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="337" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="459" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="523" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3175" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="546" r_length="23" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E368193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATT</genome_strand>
        <mrna_strand>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACTCAAG...........................................................................................ATGGAGTTATTGGCATTGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210597" ref_strand="+" ref_description="SGN-E210597 [cLEC-68-G21]">
      <seq>tagtatttattttttgtcactttctactttacatatttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaaacattgaagagaaaattaccaaagatggagttattgggatcggaattgctgctactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="194" g_stop="362" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="308" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="430" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="494" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3187" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="529" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E210597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="194" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCT</genome_strand>
        <mrna_strand>TAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAAACATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGGATCGGAATTGCTGCTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249536" ref_strand="+" ref_description="SGN-E249536 [cLEF-56-B2]">
      <seq>atttagccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="228" g_stop="362" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="274" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="396" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="460" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3305" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="613" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E249536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="228" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTG</genome_strand>
        <mrna_strand>ATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390601" ref_strand="+" ref_description="SGN-E390601 [TUS-47-C8]">
      <seq>ccacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaaaaaaacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="234" g_stop="362" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="268" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="390" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3043" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="436" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E390601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="234" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTG</genome_strand>
        <mrna_strand>CCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAAAAAACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283141" ref_strand="+" ref_description="SGN-E283141 [cLER-17-C14]">
      <seq>cacatttccctctcctttcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="235" g_stop="362" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="267" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="389" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3052" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="444" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E283141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="235" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAA</genome_strand>
        <mrna_strand>CACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285437" ref_strand="+" ref_description="SGN-E285437 [cLES-10-E17]">
      <seq>tcgaacaatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctggtggttactatagaagcggggactttccaagaagcaagcagcttgttgatcgttgtttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="252" g_stop="362" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="250" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="372" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E285437" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="252" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG</genome_strand>
        <mrna_strand>TCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGGTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAAGCAGCTTGTTGATCGTTGTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279273" ref_strand="-" ref_description="SGN-E279273 [cLEL-4-K14](-)">
      <seq>gcacgagatttcaacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggngactttccaagaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="252" g_stop="362" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="250" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2797" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="347" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E279273" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279273" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="252" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAG</genome_strand>
        <mrna_strand>GCACGAGATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGNGACTTTCCAAGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209455" ref_strand="+" ref_description="SGN-E209455 [cLEC-54-A13]">
      <seq>acaatttcgacaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggctgtgaacgtgaagatgctgaggctgaaaaaggttcatctgatgaccttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="2682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="256" g_stop="362" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2382" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="162" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E209455" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="256" e_stop="362"/>
          <exon e_start="2328" e_stop="2382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAA</genome_strand>
        <mrna_strand>ACAATTTCGACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGAACGTGAAGATGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286634" ref_strand="+" ref_description="SGN-E286634 [cLES-12-D15]">
      <seq>acaaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="265" g_stop="362" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="237" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="423" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="517" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E286634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="265" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCA</genome_strand>
        <mrna_strand>ACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733128" ref_strand="+" ref_description="SGN-E733128 [LB04AB12]">
      <seq>cgatatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctgaaaagcacatgaattcgtatttgtgagtgcagaagttttgatacttttcctttgaattggtagaagaaaacaatggcatgtacaactgaatcaagattcttgatttcattttctaattttatataagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="266" g_stop="362" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="236" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="358" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="422" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3437" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="707" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E733128" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="266" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGT</genome_strand>
        <mrna_strand>CGATATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279527" ref_strand="+" ref_description="SGN-E279527 [cLER-5-M10]">
      <seq>aaaatggatgcgaaaatcggaaaattcttcgattcaatcggcgatttcttcaccggcggagatcaaattccttggtgcgactctgatatagtcgctggttgtgaacgtgaagttgctgaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="267" g_stop="362" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="235" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="357" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="421" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3222" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E279527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="267" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTT</genome_strand>
        <mrna_strand>AAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589506" ref_strand="-" ref_description="SGN-E589506 [43082]">
      <seq>aatcggaaaattccttcgattcaatcggcgatttcttcaccggcggagatcaaattcccttggtgcgactcggatatagtcgctggttgtgaacgtgaagttgctaaggctgaaaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttgtcttgggctcttgttcactcaagaaggcctgaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagagaaaagctttatcttctggctgttggttactatagaagcggagactttccaagaagcaggcagcttgttgatcgttgtttggagattgcacctgattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgtcggagttttggttggtggaattgcagctgctttagcccgcaagggttgacttgccataaatacaactagtgtgcatattgaactcaactcttcctttctgttatctcttctgaagcacatgaattcgtatttgtgagtgcaaaagttttgatacttttcctttgaattggtagaaaacaatggcatgtacaactgaatcaagattcttgattaatttttatataatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="1" stop="3710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="281" g_stop="362" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2328" g_stop="2466" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="223" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="345" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="409" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3153" g_stop="3427" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="676" r_length="267" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E589506" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589506" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="281" e_stop="362"/>
          <exon e_start="2328" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGGAAAATT-CTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATT-CCTTGGTGCGACTCTGATATAGTCGCTGTAAGTTTTTTTTTTTTTTTGCGATTCTTATTTGATTTGATTGACAGATTTGAGCGTTTACTAGAGAACTGCGGTAGATTTCTATCTGAATGTCTCTGTGATTTGTGTATTTGATTCTATGATTAGTTGAAATTGAGCTTATAAGGAACTCATCGAGCGTTGTTAATATAAAAATTGTACCTTTTTTTGTTTTTGTTCTGTTATCTGTTTTTAAGAAGAAACCATTTTTGAATAAGATGCTTAATCAAGTCTGTAAATTGAGCTTAGAGATGTAATTTAGGTTAAATGTAACAACGATAACAACATATCCTTTGTAATCTCACTAGTGGAGTCTGGGGAGGGTGGTGTGTTGGTAGGAGCGGATTTACCTTGGTACGAGGGGTGTCACGTGTCACTGCTAAAGGTACAAATACTAAAAGGACACTTTTTGTAATCAAAGTTGCTCAATATCTTGTTGGTCCGGTGCCCTAGCTTTTGCGTGATAGGTTGAGTAGTATACATTTTTAAAAAAGGATTATATGTTGAAATCGGTGGTATTTTTGATCTGATAGATGAAAGAGGAAATATAGAATTTAATATGTTTGTTAGCCTAGAAACACTTGAAACGGAAAATTTAAGCTAAAGCAATCAATTTGTTAGATGCTAATTAGTTTGGATTGAAGTGAAATGGATTTTGGTTATTATTCTTAGCTAGAATTGAAGTTTCATGGTTTGTTGTTAAGTTCTGGTATTTGATAAGTTTTTCTTTATCCAGAATGTCTGAATAGAGAAGAACCGGTACGGAGGGATTTATATAGTTCATCCTCATTAGTTAGGAAGCATAGTTAATTTACTGACTGTCCTTATTTAGAAGTAAGGTTTATGAGTCATGTTGTTAAATTGTTTGACGTGTTTCTATTTGTGATGGGAAACATAGATTTTCATAGTGAAAGATCCCAAGTCCAAGAGTAAGAGTTAAAATATGTAGAAACAGTTCAAAGATCCTAATTTAGGTAACTTACAAAATGTAAAATTGAAGTGGCATAAGTATTCAAACCTGATTGCCACACAATCAATCAACTAACCATGCCTCAACTCCCTCCAACCTAGTTGGGGTTGGATATACTAGTCATCTATATAAATTTTGCTTTAGATTTATAACATTTCGGTGCACTTCACTCCAATAATAGTAAGTAGCTTCTCATATATTCTATTTTATAGAAGGAGAGCATGGGAGAAGACGAGCATGCTACTTAGTTTACAAACTTTTTCATTCTGTATCCTTTAATTCTGTATTAACTTTGGTGATTTGGCTATTTTGCGGAATAGAAACATGAGCAAAAGCAAAGCAAACATTATTTCACATAGGACTCTCTTCATTTTACAGTTCTAATTATATCCTGGAAACTTCGATACTAAATTATAAGCTGTTTACTGATTGAAATCATTTGCTTACTTTCTTTTTTCTGCAATTGAAGTTTGGTTTTTGGACAGAAATACGAGTACTTCTAAACGGAATTTAAAGGTTGACTACTTAATAATGGTCTAAGACTGATATAGTCAATTAAAAGTCGAGGCTAGACAAAATATTCAGTCAATTATCCTTGCTCCGTTATGTAGAAAGCAAGCTGTGGTACATGATTTCAAGTGTTGCATCATGATAGTGGGCAGTGACTTGAGGATCTTTACTTTTCTGATTTTAATTCCTTTTGTGCACATTTGAAACCCAACAATATGAGTTAGCACCATAAGCAGTACATTTTCCAGCAATTTTTCTCGCTTATAAAATGGTTAAGATGCAGTACAAGCCTGCAGAAATTTTCTTTGTGGATCTTTCTGGAATTAAATCAGGAGATAGCCCGTGGAACATCTAAATGATTTGCAGTTCCATACGCAATGATGTTATGTAAACTGATTCAGAATATTCTTGCAATCCTTTTGGCTTTTAATTAGTATTTGAATATTGAAGTTGCAATATGTCTACAGGGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTA-ATTTTAT</genome_strand>
        <mrna_strand>AATCGGAAAATTCCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCCTTGGTGCGACTCGGATATAGTCGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGAACGTGAAGTTGCTAAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTGTCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGAGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGAGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCACCTGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTCGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTG-ACTTG-C-CATAAATACAACTAGTGTGCATATTGAACTCAACTCTT-CCTTTCTGTTATCTCTTCTG--AAGCACATGAATTCGTATTTGTGAGTGCAAAAGTTTTGATACTTTTCCTTTGAATTGGT---AGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTAATTTTTATATAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368192" ref_strand="+" ref_description="SGN-E368192 [TUS-26-A14](-)">
      <seq>aaaaggttcatctgatgaccttaaaagtgaatgcattatgcgtttatcttgggctcttgttcactcaagaaggcctgaaagatatacagcgtgggatagcaatgcttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctgaaaagcacatgaattcgtatttgtgagtgcagaagttttgatacttttcctttgaattggtagaagaaaacaatggcatgtacaactgaatcaagattcttgatttcattttctaattttatataagtttgtcaaaagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2057" stop="3748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2357" g_stop="2466" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="233" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="297" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3153" g_stop="3457" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="602" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E368192" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2357" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTG-AAGATATACAGCGTGGGATAGCAATGCTTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAG</genome_strand>
        <mrna_strand>AAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAAGATATACAGCGTGGGATAGCAATGCTTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356188" ref_strand="+" ref_description="SGN-E356188 [cTOS-20-O10]">
      <seq>ttgaagcttctttgggtggcagtagcagtcccttgcaaatgagggaaaagctttatcttctggctgttggttactatagaagcggggactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcnagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttatcccgcaaggggtgaacttgtcatataaacacaactaatgtgcatattgaactcaactcttccccttctgttatctcttctgaaaagcacatgaattcgtatttgtgagtgcagaaggattgatacttttcctttgaattggtagaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2395" stop="3674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2461" g_stop="2466" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2701" g_stop="2822" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="128" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="192" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3153" g_stop="3374" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="414" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E356188" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2461" e_stop="2466"/>
          <exon e_start="2701" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGTCAGTATATAGAGCTATTGAACTTTTTCTTCTTCCCTTCCTTCTCCTTTTGGCTACACGCTGCATCATGCATTTGTCCTTGACATTTCCTTTCCCTGAACTGAGGGAGTTTCATAAAGAATTTCCTGAATGCTTTGAGCTATTACATTTTCCTAGTGCATATTCCTTTTCACGTTTACTTCTTTTTTACCTTCTCCTTCCCTAGCAGTTCATTACTTATTTTGTCATTTGCAGCTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAA</genome_strand>
        <mrna_strand>TTGAAG..........................................................................................................................................................................................................................................CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCNAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTATCCCGCAAGGGGTGAACTTGTCATATAAACACAACTAATGTGCATATTGAACTCAACTCTTCCCCTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGGATTGATACTTTTCCTTTGAATTGGTAGAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456988" ref_strand="+" ref_description="SGN-E456988 [cPRO-2-E3]">
      <seq>atcttctggctgttggttactatagaagcggagactttccaagaagcaggcagcttgttgatcgttgtttggagattgcacctgattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgtcggagttttggttggtggaattgcagctgctttagcccgcaagggttgacttgccataaatacaactagtgtgcatattgaactcaactcttcctttctgttatctcttctgaagcacatgaattcgtatttgtgagtgcaaaagttttgatacttttcctttgaattggtagaaaacaatggcatgtacaactgaatcaagattcttgattaatttttatataatttatataagtttgtcaaaagcataactattcaagcttgctaagtgtagcatgttaaannnnnaanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2449" stop="3766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2749" g_stop="2822" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.801" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="138" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3153" g_stop="3465" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="442" r_length="304" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="474"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E456988" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2749" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTA-ATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGCTTTGCTA</genome_strand>
        <mrna_strand>ATCTTCTGGCTGTTGGTTACTATAGAAGCGGAGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCACCTGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTCGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTG-ACTTG-C-CATAAATACAACTAGTGTGCATATTGAACTCAACTCTT-CCTTTCTGTTATCTCTTCTG--AAGCACATGAATTCGTATTTGTGAGTGCAAAAGTTTTGATACTTTTCCTTTGAATTGGT---AGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTAATTTTTATATAATTTATATAAGTTTGTCAAAAGCATAACTATTCAAGC-TTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307519" ref_strand="+" ref_description="SGN-E307519 [cLEY-24-O3]">
      <seq>gactttccaagaagcaggcagcttgttgatcgttgtttggagattgcgccggattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgctttagcccgcaagggttgaacttgtcatataaacacaactagtgtgcatattgaactcaactcttccctttctgttatctcttctgaaaagcacatgaattcgtatttgtgagtgcagaagttttgatacttttcctttgaattggtagaagaaaacaatggcatgtacaactgaatcaagattcttgatttcattttctaattttatataagtttgtcaaaagcataactattcaagctttgctaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2481" stop="3770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2781" g_stop="2822" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="106" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3153" g_stop="3468" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="422" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3469" i_stop="3661" i_length="193">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3662" g_stop="3673" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="434" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E307519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2781" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3468"/>
          <exon e_start="3662" e_stop="3673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGCTTTGCTAATACATTTTGTGTGAAGTTACTCTTTGGTTGTTTATCATGATGAACTTAATCAACAACGTATAAGCTAAGCTATGATTTCATAAGTATGACCAGAGCAGTGTGTGTGCAGACTTTACCCCTATCACTTTAAAAGGTAATGAAACTATTTCTGATAGACCTTCTACTCGAGATATGATAAAGCTTATTCGTCCATAGGACATAAACAAA</genome_strand>
        <mrna_strand>GACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGCTTTGCTAATA.................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595377" ref_strand="+" ref_description="SGN-E595377 [38649]">
      <seq>gttgatcgttgtttggagattgcacctgattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgttggagttttggttggtggaattgcagctgcttttgcccgcaagggttgacttgccatataaacacaactagtgtgcatattgaactcaattcttcccttctgttatctcttctgaagcacatgatttcgtatttgtgagtgcaaaagttttgatacttttcctttgaattggtagaaaacaatgacatgtacaactgaatcaagattcttgattaatttttatataatttatataagtttgtcaaaagcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2505" stop="3748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2805" g_stop="2822" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.801" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="82" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3153" g_stop="3458" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="382" r_length="300" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E595377" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2805" e_stop="2822"/>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCGTTGTTTGGAGGTTTTATCTTTATTTTACCTTTGCTCCACCCTTGACATTAATTTCAGCACATCTTTAATGAAATTGCATTGCTTGGAAGTGCATTCGTGCAATTCTGTTGCTTTCATTATTCACATGCATACACAAGTTCTTTTTATTGGCAATCGTCATTTCTCCTAAATTAGTAAATCTACAGATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTA-ATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGC</genome_strand>
        <mrna_strand>GTTGATCGTTGTTTGGAG...............................................................................................................................................................................ATTGCACCTGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTTGCCCGCAAGGGTTG-ACTTGCCATATAAACACAACTAGTGTGCATATTGAACTCAATTCTTCCC-TTCTGTTATCTCTTCTG--AAGCACATGATTTCGTATTTGTGAGTGCAAAAGTTTTGATACTTTTCCTTTGAATTGGT---AGAAAACAATGACATGTACAACTGAATCAAGATTCTTGATTAATTTTTATATAATTTATATAAGTTTGTCAAAAGCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620870" ref_strand="+" ref_description="SGN-E620870 [71576]">
      <seq>actagtggatcccaggctgctagttggagatgcacctgattggaggcaggccttgaccctcaagaaaacaattgaagagaaaattaccaaagatggagttattggcatcggcattgctgctactgctgtcggagttttggttggtggaattgcagctgctttagcccgcaagggttgacttgccataaatacaactagtgtgcatattgaactcaactcttcctttctgttatctcttctgaagcacatgaattcgtatttgtgagtgcaaaagttttgatacttttcctttgaattggtagaaaacaatggcatgtacaactgaatcaagattcttgattaatttttatataatttatataagtttgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2689" stop="3748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2998" g_stop="3061" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="92" r_length="63" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3153" g_stop="3448" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="380" r_length="288" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E620870" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2998" e_stop="3061"/>
          <exon e_start="3153" e_stop="3448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAGGTAGCAAAATGGAACTCTTCTTTTTTGATCGTATATCGTTTCTTGAAGAAAGAGTTGATTAATGATATGCATATCGCCATGTCTGAAACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTA-ATTTTATATAAGTTTGTCAAAAGCATAA</genome_strand>
        <mrna_strand>A-TGCACCTGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG...........................................................................................ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTCGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTG-ACTTG-C-CATAAATACAACTAGTGTGCATATTGAACTCAACTCTT-CCTTTCTGTTATCTCTTCTG--AAGCACATGAATTCGTATTTGTGAGTGCAAAAGTTTTGATACTTTTCCTTTGAATTGGT---AGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTAATTTTTATATAATTTATATAAGTTTGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477089" ref_strand="-" ref_description="SGN-E477089 [cSTB-47-O3]">
      <seq>caaagatggagttattggcatcggcattgctgctactgctgtcggagttttggttggtggaattgcagctgctttagcccgcaagggttgacttgccataaatacaactagtgtgcatattgaactcaactcttcctttctgttatctcttctgaagcacatgaattcgtatttgtgagtgcaaaagttttgatacttttcctttgaattggtagaaaacaatggcatgtacaactgaatcaagattcttgattaatttttatataatttatataagtttgtcaaaagcaaaaaaaaaaaaaaaaaaaaactgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2848" stop="49054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3148" g_stop="3450" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3451" i_stop="3661" i_length="211">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.821" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3662" g_stop="3683" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="317" r_length="22" r_score="0.591"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E477089" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477089" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3148" e_stop="3450"/>
          <exon e_start="3662" e_stop="3683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTA-ATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGCTTTGCTAATACATTTTGTGTGAAGTTACTCTTTGGTTGTTTATCATGATGAACTTAATCAACAACGTATAAGCTAAGCTATGATTTCATAAGTATGACCAGAGCAGTGTGTGTGCAGACTTTACCCCTATCACTTTAAAAGGTAATGAAACTATTTCTGATAGACCTTCTACTCGAGATATGATAAAGCTTATTCGTCCATAGGACATAAACAAAGGACTAAAGC</genome_strand>
        <mrna_strand>CAAAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTCGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTG-ACTTG-C-CATAAATACAACTAGTGTGCATATTGAACTCAACTCTT-CCTTTCTGTTATCTCTTCTG--AAGCACATGAATTCGTATTTGTGAGTGCAAAAGTTTTGATACTTTTCCTTTGAATTGGT---AGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTAATTTTTATATAATTTATATAAGTTTGTCAAAAGCAAAAAA...................................................................................................................................................................................................................AAAAAAAAAAAAAAACTGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374320" ref_strand="+" ref_description="SGN-E374320 [TUS-33-N20](-)">
      <seq>aaaaatgggttaggcacgcgccatgggttggaaaataatcagaaatttcagcatcaaccgtataaaaatggtttaggcccacgtcacgggttgacaaatgatcaggaatttcctggcaagaaacaagaggaccccaatatgaaaaatggatacaggtctgttcctcaatttggaatgtgggatcaacaagcagctgaaggtggtgcagcagccagttacacagtagaattttcgaaggctcgcgtcaacaggaaacaacacaaaaataatgatcttttagcacgaccacctagcatcgatcacgagcaggaagatcttaggaagcagcaagaggatgcttgcatgaggaaaaagaatatgttgacatacctcaattgttgcattaggccttgatcatttccaaatgtccaagtgaaagcctcattttgtaatagtcttgaaagttgctatatatgcaaattaaccacacactttttgttttctttgcaaagtaagataagattgtgtacacgtcactcttttcggaccccacttataaaattaccgtgggtatgttgttatagtaaaaacattcttattattctgttgtttaatgcagttatatacaccatatgttatattattattctgttgtttaatgcagttatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="6662" stop="4224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6362" g_stop="6222" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6221" i_stop="5755" i_length="467">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5754" g_stop="5551" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="345" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5550" i_stop="4939" i_length="612">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4938" g_stop="4801" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="482" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4800" i_stop="4697" i_length="104">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4696" g_stop="4521" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="660" r_length="178" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E374320" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6362" e_stop="6222"/>
          <exon e_start="5754" e_stop="5551"/>
          <exon e_start="4938" e_stop="4801"/>
          <exon e_start="4696" e_stop="4521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGTTTACGCACACGCCATGGGTTAGAAAATAATCAGGAATTTCAACATCAACCGTATAAAAATGGTTTAGGCCCACGTCACGGGTTGACAAATGATCAGGAATTTCCTGGCAAGAAACAAGAGGACCCCAATATGGTAAGTGTACTTTTTTTCGAGTTTAGACGGATTTTTTTCTTGATTTTAATCATTTGATTTCTGAAGTTTCCTGACTCGACTAACCTAAAGTCACTCCAAACATACCTTATAAAGTGATAACACATCTCCCTATAGAAAGACTTTCAATTACATTCTCTTTATCTCGAACTTGAGATGCTTTGATTAAGGGTCGAGAGTTATCTTGAATTCAAGTCCGTACAGAAATAACATAAGAACCTCTTTGAATAACCATAACCAAACTCGTCAAATGTACCTTGAATTCAAATCCGTACAACAACAAACTACGACTCAGTCTCAAACAAGTTAGAATCGACTATATGAATCCTCATTGATCATGTCTGAACTTATGCATTCGTCATAGTTTCTCTAGTAAATGCTTATTTCACTTCAAAGTATATATTGCATTCAAATATCAACCAAATGGCTTATATTTTTCGAAAATGCAGAAAAATGGATACAGGTCTGTTCCTCAATTTGGAATGTGGGATCAACAAGCAACTGGAGGTGGTGCAGCAGCCAGTTACACAGTAGAATTTTCGAAGGCTCGCGTCAACAGGAAACAACACAAAAATAATGATCTTTTAGCACGACCACCTAGCATCGATCACGAGCAGGAAGATCTTAGGAAGCAGCAAGAGGATGCTTGCATGGTAAGACTTGTTACTGTCAGTGCATATAACTTAAATTCACGTACATAACATATATCTTGTCATGAACTGCCATCTCATATACACATACATAGAATTAACATCCGATGAGATTAAATTCTAAATCCGTCTCCGTGTACCAAAGAAGCAACTATAGACATATATAGTGTTAAATTAACTCCCCTGCTATCTTTACTTCATGTATTATAAGTCTACTTATAAGAAACTTTCACAAATTGCACAATATGTCTTATTTTGTTACATGAAATGCTACTTGCCAAAGTATATTAAAGGTAGTCTGATGCATTAATCTTTCACTATGTATGGGGTCCGGGATGCACTGAACTTCCACTATGTACGGTGTCCGAGGAAGAGCTGGACAACAAAACATATATACATATATTTGATTTATTTATTTATTTATTTATTTTGGACAAGGCACATACATACACAAAAATGTGTACTAACAATCACAAAAGAATCGACATTAAGTTAATGACGTAAAATTCTGAATCCGCCTCTCTGTACTAGGAAACATGTTTAGCCATAAACATTATTGAACTAATTCAAACTTTCTTGTCATCTTACCTTATGTTCTTTTTTTGTTGTGTGCAGAGGAAAAAGAATATGTTGACATACCTCAATTGTTGCATTAGGCCTTGATCATTTCCAAATGTCCAAGTGAAAAGCCTCATTTTGTAATAGTCTTGAAAGTTGCTATATATGCAAATGAACCTCACACTTTTTGTTTTCTTGAGAAATATTCTAATATTATTTCTGGAATCTATTAAAATTTTTCTGAAAAAAAAAATAGTCTTATTTACTTGAGACAAGGATCTATTTATAACATCCTTAACTTTACAAAGTAAGATAAGATTGTGTACACGTCACTCTTTTCGGATCCCACTTATAAAATTACGGTGGATATGTTGTTATAGTAAAAACATTCTTATTGTTTTGTTGTTTAATGCAGTTATAT--ACCATATGTTATATTATTATTCTGTTGTTTAATGCAGTTTTATACACCATATGT</genome_strand>
        <mrna_strand>AAAAATGGGTTAGGCACGCGCCATGGGTTGGAAAATAATCAGAAATTTCAGCATCAACCGTATAAAAATGGTTTAGGCCCACGTCACGGGTTGACAAATGATCAGGAATTTCCTGGCAAGAAACAAGAGGACCCCAATATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGGATACAGGTCTGTTCCTCAATTTGGAATGTGGGATCAACAAGCAGCTGAAGGTGGTGCAGCAGCCAGTTACACAGTAGAATTTTCGAAGGCTCGCGTCAACAGGAAACAACACAAAAATAATGATCTTTTAGCACGACCACCTAGCATCGATCACGAGCAGGAAGATCTTAGGAAGCAGCAAGAGGATGCTTGCATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAAAGAATATGTTGACATACCTCAATTGTTGCATTAGGCCTTGATCATTTCCAAATGTCCAAGTG-AAAGCCTCATTTTGTAATAGTCTTGAAAGTTGCTATATATGCAAATTAACCACACACTTTTTGTTTTC........................................................................................................TTTGCAAAGTAAGATAAGATTGTGTACACGTCACTCTTTTCGGACCCCACTTATAAAATTACCGTGGGTATGTTGTTATAGTAAAAACATTCTTATTATTCTGTTGTTTAATGCAGTTATATACACCATATGTTATATTATTATTCTGTTGTTTAATGCAGTTATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360469" ref_strand="+" ref_description="SGN-E360469 [cLPP-8-C8]">
      <seq>tagtctcgagtttttttttccaccatttctctcctgtgtcttttcctctttgtgcttcatggaaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagccatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttagatgtacgtcacgagttgaaaaatgacaaggaattaaaccaccatcatgagcataaacagagcttagacgcacgtcatgggttgaaaaatgataaggaaattcagcatcatgaacataaacagggcttagacgcacgtcatggtcatgggttgaaaaacaacaataaggaaattcagaatcatgagtataaacatggtttagacgcacatcatggttatgggatgaaaaacaacaataaggaaattcagcatcatgagaataaacatggtttagacgcacatcacggtcatgggttgaaaaacaacaataaggaaattcagcatcatgagaatagacatggtgtagacgcacatcacggtcatgggttgaaaaacaacaataaggaaattcagcatcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8253" stop="6274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7953" g_stop="7888" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="76" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7106" g_stop="6573" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="611" r_length="535" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E360469" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7953" e_stop="7888"/>
          <exon e_start="7106" e_stop="6573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAGGTATGTTTAGATTTAATATATGAAAAATTATTTTTTAAAAAAATAAATAAATAATTTACTTTCTCCATTAATTCTTCTTATCATCTTCAAGATAGGAAACAAAATCATTTCTAAATATTGTTATATAATCCTTGGGTATTTATTCAATGATCTTTTTGAGAAAAAAAATAAATTCATGTTTAGATTGTATGATCTTTAAATGGAAAATGTAAGAGAAAATAAATGTTCTAGATTGATTTTGATAAAAATGATCTTCATGAAGATAGAGCAATTTCCCTTCTTCTTTTTTTATGAAAATTGTATTAAAAGTTCATACAATTTTCTTGATTATTTTGAAACTAATTAAATATGGAAGGAGAAAAAAAATGATTTAATGGAAAATAATAATGAAGATAGAGCAATTAATTTCCTTTTTGATTAGCTTAATGATCATGATTCATTAACTCATTCTCACTCTTTTAATTATCATTATTATCATCAGTTCAAATCACGATTACATATAGAATTTAATTATATTTTCGTGATACATTCTTTTCTATGTGAATTTATAGTTTGTTTTTATATGAAAATTGACCTTAGAATAGGTGCATGTTTCGAGAATTGCTCAATCATTTTATCTAAAAGTTTAATTTATTAAAGATAGATACTTTCATTTAATAGTTTACACGTTTAAAATATAGGTTAATTATCTATTCATATTACTCACATTCGTTGTAACTAGGGTAGAAGGGGTTCATCTGAATTTATGCTCCGACTAAATGACATTATTCTAAATTTATAGAGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAG-CATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTTTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTGTAGACGCACATCACGGTCATGGGTTGAAAAACAATAATAAGGAAATTCAGCATCATGAA</genome_strand>
        <mrna_strand>TTTTTTTTTCCACCATTTCTCTCCTGTGTCTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTAGATGTACGTCACGAGTTGAAAAATGACAAGGAATTAAACCACCATCATGAGCATAAACAGAGCTTAGACGCACGTCATGGGTTGAAAAATGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCACGTCATGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTTTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAGACATGGTGTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362943" ref_strand="+" ref_description="SGN-E362943 [cLPP-2-O11]">
      <seq>gtttttttttttcaccatttctctcctgtgtcttttcctctttgtgcttcatggaaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagcatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttagatgtacgtcacgagttgaaaaatgacaaggaattaaaccaccatcatgagcataaacagagcttagacgcacgtcatgggttgaaaaatgataaggaaattcagcatcatgaacataaacagggcttagacgcacgtcatggtcatgggttgaaaaacaacaataaggaaattcagaatcatgagtataaacatggtttagacgcacatcatggttatgggatgaaaaacaacaataaggaaattcagcatcatgagaataaacatggtttagacgcacatcacggtcatgggttgaaaaacaacaataaggaaattcagcatcatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8254" stop="6344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7955" g_stop="7888" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7106" g_stop="6644" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="531" r_length="463" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E362943" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7955" e_stop="7888"/>
          <exon e_start="7106" e_stop="6644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAGGTATGTTTAGATTTAATATATGAAAAATTATTTTTTAAAAAAATAAATAAATAATTTACTTTCTCCATTAATTCTTCTTATCATCTTCAAGATAGGAAACAAAATCATTTCTAAATATTGTTATATAATCCTTGGGTATTTATTCAATGATCTTTTTGAGAAAAAAAATAAATTCATGTTTAGATTGTATGATCTTTAAATGGAAAATGTAAGAGAAAATAAATGTTCTAGATTGATTTTGATAAAAATGATCTTCATGAAGATAGAGCAATTTCCCTTCTTCTTTTTTTATGAAAATTGTATTAAAAGTTCATACAATTTTCTTGATTATTTTGAAACTAATTAAATATGGAAGGAGAAAAAAAATGATTTAATGGAAAATAATAATGAAGATAGAGCAATTAATTTCCTTTTTGATTAGCTTAATGATCATGATTCATTAACTCATTCTCACTCTTTTAATTATCATTATTATCATCAGTTCAAATCACGATTACATATAGAATTTAATTATATTTTCGTGATACATTCTTTTCTATGTGAATTTATAGTTTGTTTTTATATGAAAATTGACCTTAGAATAGGTGCATGTTTCGAGAATTGCTCAATCATTTTATCTAAAAGTTTAATTTATTAAAGATAGATACTTTCATTTAATAGTTTACACGTTTAAAATATAGGTTAATTATCTATTCATATTACTCACATTCGTTGTAACTAGGGTAGAAGGGGTTCATCTGAATTTATGCTCCGACTAAATGACATTATTCTAAATTTATAGAGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTTTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAGA</genome_strand>
        <mrna_strand>GTTTTTTTTTTTCACCATTTCTCTCCTGTGTCTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTAGATGTACGTCACGAGTTGAAAAATGACAAGGAATTAAACCACCATCATGAGCATAAACAGAGCTTAGACGCACGTCATGGGTTGAAAAATGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCACGTCATGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTTTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362381" ref_strand="+" ref_description="SGN-E362381 [cLPP-10-B2]">
      <seq>gagttttttttttcaccatttctctcctgtgtcttttcctctttgtgcttcatggaaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagcatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttagatgtacgtcacgagttgaaaaatgacaaggaattaaaccaccatcatgagcataaacagagcttagacgcacgtcatgggttgaaaaatgataaggaaattcagcatcatgaacataaacagggcttagacgcacgtcatggtcatgggttgaaaaacaacaataaggaaattcagaatcatgagtataaacatggtttagacgcacatcatggttatgggatgaaaaacaacaataaggaaattcagcatcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8253" stop="6417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7888" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7106" g_stop="6717" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="459" r_length="390" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E362381" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7888"/>
          <exon e_start="7106" e_stop="6717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAGGTATGTTTAGATTTAATATATGAAAAATTATTTTTTAAAAAAATAAATAAATAATTTACTTTCTCCATTAATTCTTCTTATCATCTTCAAGATAGGAAACAAAATCATTTCTAAATATTGTTATATAATCCTTGGGTATTTATTCAATGATCTTTTTGAGAAAAAAAATAAATTCATGTTTAGATTGTATGATCTTTAAATGGAAAATGTAAGAGAAAATAAATGTTCTAGATTGATTTTGATAAAAATGATCTTCATGAAGATAGAGCAATTTCCCTTCTTCTTTTTTTATGAAAATTGTATTAAAAGTTCATACAATTTTCTTGATTATTTTGAAACTAATTAAATATGGAAGGAGAAAAAAAATGATTTAATGGAAAATAATAATGAAGATAGAGCAATTAATTTCCTTTTTGATTAGCTTAATGATCATGATTCATTAACTCATTCTCACTCTTTTAATTATCATTATTATCATCAGTTCAAATCACGATTACATATAGAATTTAATTATATTTTCGTGATACATTCTTTTCTATGTGAATTTATAGTTTGTTTTTATATGAAAATTGACCTTAGAATAGGTGCATGTTTCGAGAATTGCTCAATCATTTTATCTAAAAGTTTAATTTATTAAAGATAGATACTTTCATTTAATAGTTTACACGTTTAAAATATAGGTTAATTATCTATTCATATTACTCACATTCGTTGTAACTAGGGTAGAAGGGGTTCATCTGAATTTATGCTCCGACTAAATGACATTATTCTAAATTTATAGAGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAG</genome_strand>
        <mrna_strand>GAGTTTTTTTTTTCACCATTTCTCTCCTGTGTCTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTAGATGTACGTCACGAGTTGAAAAATGACAAGGAATTAAACCACCATCATGAGCATAAACAGAGCTTAGACGCACGTCATGGGTTGAAAAATGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCACGTCATGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360048" ref_strand="+" ref_description="SGN-E360048 [cLPP-9-L2]">
      <seq>aaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagcatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttagatgtacgtcacgagttgaaaaatgacaaggaattaaaccaccatcatgagcataaacagagcttagacgcacgtcatgggttgaaaaatgataaggaaattcagcatcatgaacataaacagggcttagacgcacgtcatggtcatgggttgaaaaacaacaataaggaaattcagaatcatgagtattaacatggtttagacgcacatcatggttatgggatgaaaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="7408" stop="6441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7106" g_stop="6741" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="380" r_length="366" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E360048" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7106" e_stop="6741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAAC</genome_strand>
        <mrna_strand>AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTAGATGTACGTCACGAGTTGAAAAATGACAAGGAATTAAACCACCATCATGAGCATAAACAGAGCTTAGACGCACGTCATGGGTTGAAAAATGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCACGTCATGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGAATCATGAGTATTAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363491" ref_strand="+" ref_description="SGN-E363491 [cLPP-4-J1]">
      <seq>gagaactactctcgagttttttttttcaccatttctctcctgtgtcttttcctctttgtgcttcatggaaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagcatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttagatgtacgtcacgagttgaaaaatgacaaggaattaaaccaccatcatgagcataaacagagcttagacgcacgtcatgggttgaaaaatgataaggaaattcagcatcatgaacataaacagggcttagacgcacgtcatggtcatgggttgaaaaacaacaataaggaaattcagaatcatgagtataaacatggtttagacgcacatcatggttatgggatgaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8253" stop="6444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7953" g_stop="7888" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="82" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7106" g_stop="6744" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="445" r_length="363" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E363491" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7953" e_stop="7888"/>
          <exon e_start="7106" e_stop="6744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAGGTATGTTTAGATTTAATATATGAAAAATTATTTTTTAAAAAAATAAATAAATAATTTACTTTCTCCATTAATTCTTCTTATCATCTTCAAGATAGGAAACAAAATCATTTCTAAATATTGTTATATAATCCTTGGGTATTTATTCAATGATCTTTTTGAGAAAAAAAATAAATTCATGTTTAGATTGTATGATCTTTAAATGGAAAATGTAAGAGAAAATAAATGTTCTAGATTGATTTTGATAAAAATGATCTTCATGAAGATAGAGCAATTTCCCTTCTTCTTTTTTTATGAAAATTGTATTAAAAGTTCATACAATTTTCTTGATTATTTTGAAACTAATTAAATATGGAAGGAGAAAAAAAATGATTTAATGGAAAATAATAATGAAGATAGAGCAATTAATTTCCTTTTTGATTAGCTTAATGATCATGATTCATTAACTCATTCTCACTCTTTTAATTATCATTATTATCATCAGTTCAAATCACGATTACATATAGAATTTAATTATATTTTCGTGATACATTCTTTTCTATGTGAATTTATAGTTTGTTTTTATATGAAAATTGACCTTAGAATAGGTGCATGTTTCGAGAATTGCTCAATCATTTTATCTAAAAGTTTAATTTATTAAAGATAGATACTTTCATTTAATAGTTTACACGTTTAAAATATAGGTTAATTATCTATTCATATTACTCACATTCGTTGTAACTAGGGTAGAAGGGGTTCATCTGAATTTATGCTCCGACTAAATGACATTATTCTAAATTTATAGAGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTCACCATTTCTCTCCTGTGTCTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTAGATGTACGTCACGAGTTGAAAAATGACAAGGAATTAAACCACCATCATGAGCATAAACAGAGCTTAGACGCACGTCATGGGTTGAAAAATGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCACGTCATGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374321" ref_strand="+" ref_description="SGN-E374321 [TUS-33-N20]">
      <seq>tcgagtttttttttttcaccatttctctcctgtgtcttttcctctttgtgcttcatggaaaatcgaaaggagagaaatggtccaagaaaagtgcctcaatttggagcatgggataacaatggtggggatggaggaaatgctggttatactgtggagttctcaaaagctcgtgccaacaaacaacatcaacctaataacggtttacatgtacgtctcggagttgaaaaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8254" stop="6648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7959" g_stop="7888" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7106" g_stop="6948" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="232" r_length="160" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E374321" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7959" e_stop="7888"/>
          <exon e_start="7106" e_stop="6948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAGGTATGTTTAGATTTAATATATGAAAAATTATTTTTTAAAAAAATAAATAAATAATTTACTTTCTCCATTAATTCTTCTTATCATCTTCAAGATAGGAAACAAAATCATTTCTAAATATTGTTATATAATCCTTGGGTATTTATTCAATGATCTTTTTGAGAAAAAAAATAAATTCATGTTTAGATTGTATGATCTTTAAATGGAAAATGTAAGAGAAAATAAATGTTCTAGATTGATTTTGATAAAAATGATCTTCATGAAGATAGAGCAATTTCCCTTCTTCTTTTTTTATGAAAATTGTATTAAAAGTTCATACAATTTTCTTGATTATTTTGAAACTAATTAAATATGGAAGGAGAAAAAAAATGATTTAATGGAAAATAATAATGAAGATAGAGCAATTAATTTCCTTTTTGATTAGCTTAATGATCATGATTCATTAACTCATTCTCACTCTTTTAATTATCATTATTATCATCAGTTCAAATCACGATTACATATAGAATTTAATTATATTTTCGTGATACATTCTTTTCTATGTGAATTTATAGTTTGTTTTTATATGAAAATTGACCTTAGAATAGGTGCATGTTTCGAGAATTGCTCAATCATTTTATCTAAAAGTTTAATTTATTAAAGATAGATACTTTCATTTAATAGTTTACACGTTTAAAATATAGGTTAATTATCTATTCATATTACTCACATTCGTTGTAACTAGGGTAGAAGGGGTTCATCTGAATTTATGCTCCGACTAAATGACATTATTCTAAATTTATAGAGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCAC-GAGTTGAAAAATGAC</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTCACCATTTCTCTCCTGTGTCTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTATACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAATAACGGTTTACATGTACGTCTCGGAGTTGAAAAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360114" ref_strand="+" ref_description="SGN-E360114 [cLPP-14-G20]">
      <seq>tgggacacaccccattttcccttcattcactttctaatctttcccttctctaacaaaaaaacataaaaacataacaacaacaacaaacaacaaaaaaagtagtttgcatcttttactctttgcctttttgtcccaaaaaaataaaaaataaaaaaaatggggggttgttgctcaaaggcagagactgatcctgcacaaaataatgaagaaattggacaatcatattcaaaacaaggagaatcaaatgcaggaaacaatgacatgcaaggttccactacaccatcaaaggctccaccacatgcatcaccaaaccattcttcaaagccatctaatgcagccccaatagggccagtattatgcaggccaatggaggatataaaggcaacatacaccctaggtaaagaactaggaagaagtcaatttggtgttacacatttgtgcacacacaaacaaacaggggagcaatttgcatgccaaacaattgccaagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9031" stop="10637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9331" g_stop="9577" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9578" i_stop="10092" i_length="515">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10093" g_stop="10337" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="495" r_length="245" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E360114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9331" e_stop="9577"/>
          <exon e_start="10093" e_stop="10337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACACACCCCATTTTCCCTTCATTCACTTTCTAATCTTTCCCTTCTCTAACAAAAAAAAACATAAAAACATAACAACAACAACAAACAACAAAAAAAGTAGTTTGCATCTTTTACTCTTTGCCTTTTTGTCCC--AAAAA-AAAAAAT--AAAAAATGGGGGGTTGTTGCTCAAAGGCAGAGACTGATCCTGCACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAGGCATGTAAATCTTGATTTTCAAATTTCATCATTTTCAACCAATGTCAACCTATATGCACATATATGTTATTTTTTGAAATAGAAATTTGATGAAATATCTTTGTTAAAACACGTGATGACATGCTCAGAAAACGCATATGCAGCGTGTACATACATGTATTCTATTGAAAGTTATTCAGAGAAATGATGTCTGATGATATCTCTTGTTACATGCATAAAAAAAACACAGAGATGTGTATGTATACGCGTGCACATAACACATATGTTGTATCAAAATTTTTCGATGAAATAGAGTCTCTAATAGCATCTCGTGTTGATACATGCATAAGAGCATAAATATGCAGTCAGGTGCATGCATAGACATCTATTGATATTTATCGATGAAACAATGTGTGATTGGCATTTCTTTTCTTGTTAATACATGAATTAAAACAGAGACATGCAACCAGACAAATAATATATTGAAAAAATTCGATGAAACGGTGTCTGATGACATCTTGTGTTGTTACATGCAGGAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAA</genome_strand>
        <mrna_strand>TGGGACACACCCCATTTTCCCTTCATTCACTTTCTAATCTTTCCCTTCTCTAAC--AAAAAAACATAAAAACATAACAACAACAACAAACAACAAAAAAAGTAGTTTGCATCTTTTACTCTTTGCCTTTTTGTCCCAAAAAAATAAAAAATAAAAAAAATGGGGGGTTGTTGCTCAAAGGCAGAGACTGATCCTGCACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAATGCAGCCCCAATAGGGCCAGTATTATGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAAGTCAATTTGGTGTTACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCCAAACAATTGCCAAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333145" ref_strand="+" ref_description="SGN-E333145 [cTOD-19-D24]">
      <seq>ccattttcccttcattcactttctaatctttcccttctctaacaaaaaaaaacataaaaacataacaacaacaacaaacaacaaaaaaagtagtttgcatcttttactctttgcctttttgtcccaaaaaaaaaaataaaaaatggggggttgttgctcaaaggcagagactgatcctgcacaaaataatgaagaaattggacaatcatattcaaaacaaggagaatcaaatgcaggaaacaatgacatgcaaggttccactacaccatcaaaggctccaccacatgcatcaccaaaccattcttcaaagccatctaaggcagccccaatagggccagtattaggcaggccaatggaggatataaaggcaacatacaccctaggtaaagaactaggaagaggtcaatttggtgtaacacatttgtgcacacacaaacaaacaggggagcaatttgcatgcaaaacaattgccaagaggaaattagtgaataaagaggatattgaggatgtaaggagggaagtgcaaattatgcaccatttgacagaacaaccaaacattgttgaactcaaaggggcttatgaggataaacattctgtgcatttggtcatggaattgtgtgctggaagtgaactttttgatagaattatagctaaagggcattatacagaaagagcagcagcttcattgtttgagaaaattgtgcaaattgtacatacttgtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9042" stop="10882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9342" g_stop="9577" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9578" i_stop="10092" i_length="515">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10093" g_stop="10582" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="726" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E333145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9342" e_stop="9577"/>
          <exon e_start="10093" e_stop="10582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTCCCTTCATTCACTTTCTAATCTTTCCCTTCTCTAACAAAAAAAAACATAAAAACATAACAACAACAACAAACAACAAAAAAAGTAGTTTGCATCTTTTACTCTTTGCCTTTTTGTCCCAAAAAAAAAAATAAAAAATGGGGGGTTGTTGCTCAAAGGCAGAGACTGATCCTGCACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAGGCATGTAAATCTTGATTTTCAAATTTCATCATTTTCAACCAATGTCAACCTATATGCACATATATGTTATTTTTTGAAATAGAAATTTGATGAAATATCTTTGTTAAAACACGTGATGACATGCTCAGAAAACGCATATGCAGCGTGTACATACATGTATTCTATTGAAAGTTATTCAGAGAAATGATGTCTGATGATATCTCTTGTTACATGCATAAAAAAAACACAGAGATGTGTATGTATACGCGTGCACATAACACATATGTTGTATCAAAATTTTTCGATGAAATAGAGTCTCTAATAGCATCTCGTGTTGATACATGCATAAGAGCATAAATATGCAGTCAGGTGCATGCATAGACATCTATTGATATTTATCGATGAAACAATGTGTGATTGGCATTTCTTTTCTTGTTAATACATGAATTAAAACAGAGACATGCAACCAGACAAATAATATATTGAAAAAATTCGATGAAACGGTGTCTGATGACATCTTGTGTTGTTACATGCAGGAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAATTAGTGAATAAAGAGGATATTGAGGATGTAAGGAGGGAAGTGCAAATTATGCACCATTTGACAGAACAACCAAACATTGTTGAACTCAAAGGGGCTTATGAGGATAAACATTCTGTGCATTTGGTCATGGAATTGTGTGCTGGAGGTGAACTTTTTGATAGAATTATAGCTAAAGGGCATTATACAGAAAGAGCAGCAGCTTCATTG-TTGAGAACAATTGTGCAAATTGTACATACTTGTCATTC</genome_strand>
        <mrna_strand>CCATTTTCCCTTCATTCACTTTCTAATCTTTCCCTTCTCTAACAAAAAAAAACATAAAAACATAACAACAACAACAAACAACAAAAAAAGTAGTTTGCATCTTTTACTCTTTGCCTTTTTGTCCCAAAAAAAAAAATAAAAAATGGGGGGTTGTTGCTCAAAGGCAGAGACTGATCCTGCACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAATTAGTGAATAAAGAGGATATTGAGGATGTAAGGAGGGAAGTGCAAATTATGCACCATTTGACAGAACAACCAAACATTGTTGAACTCAAAGGGGCTTATGAGGATAAACATTCTGTGCATTTGGTCATGGAATTGTGTGCTGGAAGTGAACTTTTTGATAGAATTATAGCTAAAGGGCATTATACAGAAAGAGCAGCAGCTTCATTGTTTGAGAA-AATTGTGCAAATTGTACATACTTGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359688" ref_strand="+" ref_description="SGN-E359688 [cLPP-5-I9]">
      <seq>cacaaaataatgaagaaattggacaatcatattcaaaacaaggagaatcaaatgcaggaaacaatgacatgcaaggttccactacaccatcaaaggctccaccacatgcatcaccaaaccattcttcaaagccatctaaggcagccccaatagggccagtattaggcaggccaatggaggatataaaggcaacatacaccctaggtaaagaactaggaagaggtcaatttggtgtaacacatttgtgcacacacaaacaaacaggggagcaatttgcatgcaaaacaattgccaagaggaaattagtgaataaagaggatattgaggatgtaaggagggaagtgcaaattatgcaccatttgacagaacaaccaaacattgttgaactcaaaggggcttatgaggataaacattctgtgcatttggtcatggaattgtgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9221" stop="10778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9521" g_stop="9577" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9578" i_stop="10092" i_length="515">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10093" g_stop="10478" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="443" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E359688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9521" e_stop="9577"/>
          <exon e_start="10093" e_stop="10478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAGGCATGTAAATCTTGATTTTCAAATTTCATCATTTTCAACCAATGTCAACCTATATGCACATATATGTTATTTTTTGAAATAGAAATTTGATGAAATATCTTTGTTAAAACACGTGATGACATGCTCAGAAAACGCATATGCAGCGTGTACATACATGTATTCTATTGAAAGTTATTCAGAGAAATGATGTCTGATGATATCTCTTGTTACATGCATAAAAAAAACACAGAGATGTGTATGTATACGCGTGCACATAACACATATGTTGTATCAAAATTTTTCGATGAAATAGAGTCTCTAATAGCATCTCGTGTTGATACATGCATAAGAGCATAAATATGCAGTCAGGTGCATGCATAGACATCTATTGATATTTATCGATGAAACAATGTGTGATTGGCATTTCTTTTCTTGTTAATACATGAATTAAAACAGAGACATGCAACCAGACAAATAATATATTGAAAAAATTCGATGAAACGGTGTCTGATGACATCTTGTGTTGTTACATGCAGGAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAATTAGTGAATAAAGAGGATATTGAGGATGTAAGGAGGGAAGTGCAAATTATGCACCATTTGACAGAACAACCAAACATTGTTGAACTCAAAGGGGCTTATGAGGATAAACATTCTGTGCATTTGGTCATGGAATTGTGTGCT</genome_strand>
        <mrna_strand>CACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAATTAGTGAATAAAGAGGATATTGAGGATGTAAGGAGGGAAGTGCAAATTATGCACCATTTGACAGAACAACCAAACATTGTTGAACTCAAAGGGGCTTATGAGGATAAACATTCTGTGCATTTGGTCATGGAATTGTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412539" ref_strand="-" ref_description="SGN-E412539 [STM-16-O2]">
      <seq>acaagtcgccaagtggttgcagacacagggattcaggaaagtatttaacgtggccggaggaatccatgaatatgctgtcaaagttgatccatcgatcccaacttattgaagcgggtactcttcgtgtccctgctctttcccctgccccgcctcccggtgacagagctaagtttggacaaaaccattttgttttcgatttgtcctacaattttgactcaaacatcaatgtgaatggttgatgtcaggacatcttttgctatctctgtatttccaacatgcctcaagcatcaaatcatacaatttgctacggttttcaccatattagagataacacaatgcataattttaaaaaattctccatattttgaaatgttgctagatgtttatggatttactggtaatgttttgtcacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="14993" stop="13428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14693" g_stop="14666" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14131" g_stop="13729" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="413" r_length="385" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="424"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E412539" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412539" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14693" e_stop="14666"/>
          <exon e_start="14131" e_stop="13729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCGCCAAGTGGTTGCAGACACAGGTAGGATCTTTACCTTCATTTGTAGTTGTATAATGTCACCAGATAAACCTGTTCTACATGTAATGGAAGGTTTTTGTCTTCCTATCATCCTTCTGAGATGCAAGGCACAAATTGGAACAGTTATCTCTCATACTAGTAGATGAAGATGGTCTTTTAGATCTTCACTTGTGGACTTCGAGGCATAAGTAAAGTGTGATGTGTACCAGAAGAATGTTGGGGTTCAGATTGAAAATTAGGTTTACTGAAGCATCTCTCCAATTAAGTATGCAAAAAGCCTAATATTAGTTTTTACATTTGATCCGCTTTAGTGTGTTGCGTGCTATGACATGTTTCATACACCAAATGATTTGAGAAGTGGTGAAACTAATTATGATAGTTTATTTCCAGTATGTCGATAGATCTTAGGTGATATTACCACTAGAACATCGATCCTAACACAGAAGGCAGGCTATGCTGCAATGCTGTCATTTTTCATCCTCTCATAATGAACCATTGTTGCTTCTTTACAAAAAAAAAAATATTTGGGATTCTCAGGGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAATTTTCTCCATATTTTGAAATGTTGCTAGATGTTAATGGATTTACTGGTAGTGTTTTGTCACA</genome_strand>
        <mrna_strand>ACAAGTCGCCAAGTGGTTGCAGACACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCAGGAAAGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCCCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTCGATTTGTCCTACAATTTTG------AC-T-C----AA-AC-ATCAATGTGAATGGTTGATGTCAGGACATC--TT-T-TGCTATCTCTGTATTTCCAACATGCCTCAAGCATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAAAATTCTCCATATTTTGAAATGTTGCTAGATGTTTATGGATTTACTGGTAATGTTTTGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411488" ref_strand="-" ref_description="SGN-E411488 [STM-14-D10]">
      <seq>aatggtgccagaatttgaagaagctgcatttggtgcacctctgaataaggttgtaaagtgcaaaactaagtttgggtggcatttgtgcaaagttctatctgagagggaggaatctgtacttgaacacatccagccgaacgagtttcatgtgaggtttcaagatccctctttcctggaagaggctcaattgattgatgttcgagaaccagaggaagtggcccaagcttctgtaccaggatttcaggttcttcctcttcgccaatttggagtctggggaccagaaataactactaagtttgatcctcagaaggacacttatgtgttgtgtcaccatggcatgaggtcactacaagtcgccaagtggttgcagacgcagggattcaggaaagtatttaacatggccggaggaatccatgaatatgctgtcaaagttgatccatcgatcccaacttattgaagcgggtactcttcgtgtccctgctctttcccctgccccgcctcccggtgacagagctaagtttggacaaaaccattttgttttcgatttgtcctacaatttttactcaaacatcctgggaacacaatcaatgtgaatggttgatgtcaggacatcttttgtacgctatctctgtatttccaacatgcctaagcatcaaatcatgcaatttgctacggttttcaccatattagagataacacaatgcataattttaaaaatttctccatatttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16370" stop="13472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16184" g_stop="16181" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16180" i_stop="16066" i_length="115">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16065" g_stop="15965" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="105" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15964" i_stop="15892" i_length="73">
            <donor d_prob="0.949" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15891" g_stop="15781" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="216" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15780" i_stop="15095" i_length="686">
            <donor d_prob="0.330" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15094" g_stop="14986" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="325" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14985" i_stop="14717" i_length="269">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14716" g_stop="14666" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="376" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14131" g_stop="13768" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="739" r_length="363" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E411488" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411488" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16184" e_stop="16181"/>
          <exon e_start="16065" e_stop="15965"/>
          <exon e_start="15891" e_stop="15781"/>
          <exon e_start="15094" e_stop="14986"/>
          <exon e_start="14716" e_stop="14666"/>
          <exon e_start="14131" e_stop="13768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAGGTAATCAAAGAAATCCTTCTTCACTTGAACAACTCAGGAGCCTTGTTCTTACTTGTGTTACTGATATATGCAGGGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGTGTATGAGCTCGTTTGTTTCACTATTTTAGAATACTCACTTGCAGCTTTAATATCTTTTAGTTATTTATTTATTTAAGTTAATGAGCATACTGGACTTAAAATAGAAAAGAGTCCAAGGGGCTTCTCAAGTAATGAATGTGGCTTCAGTTGTGAAGCTTGTCCACATGGTTCCTGTCACACAACAAGGACAGAGAGAATAGGTATATGACTTATGGGAAAGCAATAGCTTTTGATGCTGAGCAGAATTGACCTGTCTGTCAGCCTTCAAATATAAGGAGAAGCTAATAGAAGCTGCCCACCAATCTTGGGGGTGCATAAAAACTAATTATGTTGTGATGTTGTTCTTAAGAAGATTCACTTTCAAGCCAGAAACTGCCTTGAAAGCTAGTAATATCCCGTGCAACCGTGGAATCTGTTCTTTATCTGCATCACACCTGGCTTTATGAGTAATAGTAGTATTAATTTTACTAACAATGACAATGACAAGTTGTGCGAGTCAATAGACTGGTCTTATTTGCTTCAAAATTAAATTCTTTGAGTGCTCCTATTAGACATATTTGGCGACATTGGAAAGTTAGAGCATGATACTTAAACATGTGTGAAAGAGGATGAAGTCACTATATTTTTCTTAAGAAGAGCAGGAATCACAGTTCCACTGTTCATTTCTGCTTTTTGTGTTGTGACAGGGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTATTGGTTAGTGCATGTTCTTCTTTGCAGACACTTCTTAACACTGTTTAGAAGCCGGTTTTCTGTTGTTATGCTTTGAGCTGAGAGTTTCTCCTTAAACAGAAGCGTTTAACTCATGATTTGACTGCTTATTTTGTAAAAATCTGGCATGATAAACTATGATAACATATAGAGGGTCAGATGGGTGAATATCGGTTATGCAAAAATATGCCTCTCCTCTTCCTTCCCTCTATTTCCTCTGTCTCTTCTCAAATAACTTTTTGTCTTCTATGCAGTGTCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAGGTAGGATCTTTACCTTCATTTGTAGTTGTATAATGTCACCAGATAAACCTGTTCTACATGTAATGGAAGGTTTTTGTCTTCCTATCATCCTTCTGAGATGCAAGGCACAAATTGGAACAGTTATCTCTCATACTAGTAGATGAAGATGGTCTTTTAGATCTTCACTTGTGGACTTCGAGGCATAAGTAAAGTGTGATGTGTACCAGAAGAATGTTGGGGTTCAGATTGAAAATTAGGTTTACTGAAGCATCTCTCCAATTAAGTATGCAAAAAGCCTAATATTAGTTTTTACATTTGATCCGCTTTAGTGTGTTGCGTGCTATGACATGTTTCATACACCAAATGATTTGAGAAGTGGTGAAACTAATTATGATAGTTTATTTCCAGTATGTCGATAGATCTTAGGTGATATTACCACTAGAACATCGATCCTAACACAGAAGGCAGGCTATGCTGCAATGCTGTCATTTTTCATCCTCTCATAATGAACCATTGTTGCTTCTTTACAAAAAAAAAAATATTTGGGATTCTCAGGGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAATTTTCTCCATATTTTGAAATGTT</genome_strand>
        <mrna_strand>AATG...................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTGCAAAGTTCTATCTGAGAG.........................................................................GGAGGAATCTGTACTTGAACACATCCAGCCGAACGAGTTTCATGTGAGGTTTCAAGATCCCTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAAGCTTCTGTACCAGGATTTCAGGTTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTGTTG.............................................................................................................................................................................................................................................................................TGTCACCATGGCATGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCAGGAAAGTATTTAACATGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCCCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTCGATTTGTCCTACAATTTTTACTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATGTCAGGACATCTTTTGTACGCTATCTCTGTATTTCCAACATGCCT-AAGCATCAAATCATGCAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAAATTTCTCCATATTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346600" ref_strand="+" ref_description="SGN-E346600 [cTOF-28-N21]">
      <seq>tcatcatggcgtgaggtcactacaagtcgccaagtggttgcagacacagggattcaggaaggtatttaacgtggccggaggaatccatgaatatgctgtcaaagttgatccatcgatcccaacttattgaagcgggtactcttcgtgtccctgctctttcccctgccccgcctctcggtgacagagctaagtttggacaaaaccattttgtttttgatttgtcctacaattttgattcaaacatcctgggaacacaatcaatgtgaatggttgatcttaggacatcttttgtatgctatctctgtatttccaacatgcctcaattatcaaatcatacaatttgctacggttttcaccatattagagataacacaatgcataattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="15014" stop="13491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14714" g_stop="14666" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14131" g_stop="13792" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="389" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E346600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14714" e_stop="14666"/>
          <exon e_start="14131" e_stop="13792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAGGTAGGATCTTTACCTTCATTTGTAGTTGTATAATGTCACCAGATAAACCTGTTCTACATGTAATGGAAGGTTTTTGTCTTCCTATCATCCTTCTGAGATGCAAGGCACAAATTGGAACAGTTATCTCTCATACTAGTAGATGAAGATGGTCTTTTAGATCTTCACTTGTGGACTTCGAGGCATAAGTAAAGTGTGATGTGTACCAGAAGAATGTTGGGGTTCAGATTGAAAATTAGGTTTACTGAAGCATCTCTCCAATTAAGTATGCAAAAAGCCTAATATTAGTTTTTACATTTGATCCGCTTTAGTGTGTTGCGTGCTATGACATGTTTCATACACCAAATGATTTGAGAAGTGGTGAAACTAATTATGATAGTTTATTTCCAGTATGTCGATAGATCTTAGGTGATATTACCACTAGAACATCGATCCTAACACAGAAGGCAGGCTATGCTGCAATGCTGTCATTTTTCATCCTCTCATAATGAACCATTGTTGCTTCTTTACAAAAAAAAAAATATTTGGGATTCTCAGGGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAA</genome_strand>
        <mrna_strand>TCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712708" ref_strand="+" ref_description="SGN-E712708 [FB05CD08]">
      <seq>aggcttgaacacatccagccaaacgagtttcatgtgaggttgcaagatccgtctttcctggaagaggctcaattgattgatgttcgagaaccagaggaagtggcccaggcttctgtaccaggatttcagattcttcctcttcgccaatttggagtctggggaccagaaataactactaagtttgatcctcagaaggacacttatgtattgtgtcatcatggcgtgaggtcactacaagtcgccaagtggttgcagacacagggattcaggaaggtatttaacgtggccggaggaatccatgaatatgctgtcaaagttgatccatcgatcccaacttattgaagcgggtactcttcgtgtccctgctctttcccctgccccgcctctcggtgacagagctaagtttggacaaaaccattttgtttttgatttgtcctacaattttgattcaaacatcctgggaacacaatcaatgtgaatggttgatcttaggacatcttttgtatgctatctctgtatttccaacatgcctcaattatcaaatcatacaatttgctacggttttcaccatattagagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="16178" stop="13506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15881" g_stop="15781" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15780" i_stop="15095" i_length="686">
            <donor d_prob="0.330" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15094" g_stop="14986" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="210" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14985" i_stop="14717" i_length="269">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14716" g_stop="14666" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="261" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14131" g_stop="13803" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="590" r_length="329" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E712708" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15881" e_stop="15781"/>
          <exon e_start="15094" e_stop="14986"/>
          <exon e_start="14716" e_stop="14666"/>
          <exon e_start="14131" e_stop="13803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGTGTATGAGCTCGTTTGTTTCACTATTTTAGAATACTCACTTGCAGCTTTAATATCTTTTAGTTATTTATTTATTTAAGTTAATGAGCATACTGGACTTAAAATAGAAAAGAGTCCAAGGGGCTTCTCAAGTAATGAATGTGGCTTCAGTTGTGAAGCTTGTCCACATGGTTCCTGTCACACAACAAGGACAGAGAGAATAGGTATATGACTTATGGGAAAGCAATAGCTTTTGATGCTGAGCAGAATTGACCTGTCTGTCAGCCTTCAAATATAAGGAGAAGCTAATAGAAGCTGCCCACCAATCTTGGGGGTGCATAAAAACTAATTATGTTGTGATGTTGTTCTTAAGAAGATTCACTTTCAAGCCAGAAACTGCCTTGAAAGCTAGTAATATCCCGTGCAACCGTGGAATCTGTTCTTTATCTGCATCACACCTGGCTTTATGAGTAATAGTAGTATTAATTTTACTAACAATGACAATGACAAGTTGTGCGAGTCAATAGACTGGTCTTATTTGCTTCAAAATTAAATTCTTTGAGTGCTCCTATTAGACATATTTGGCGACATTGGAAAGTTAGAGCATGATACTTAAACATGTGTGAAAGAGGATGAAGTCACTATATTTTTCTTAAGAAGAGCAGGAATCACAGTTCCACTGTTCATTTCTGCTTTTTGTGTTGTGACAGGGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTATTGGTTAGTGCATGTTCTTCTTTGCAGACACTTCTTAACACTGTTTAGAAGCCGGTTTTCTGTTGTTATGCTTTGAGCTGAGAGTTTCTCCTTAAACAGAAGCGTTTAACTCATGATTTGACTGCTTATTTTGTAAAAATCTGGCATGATAAACTATGATAACATATAGAGGGTCAGATGGGTGAATATCGGTTATGCAAAAATATGCCTCTCCTCTTCCTTCCCTCTATTTCCTCTGTCTCTTCTCAAATAACTTTTTGTCTTCTATGCAGTGTCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAGGTAGGATCTTTACCTTCATTTGTAGTTGTATAATGTCACCAGATAAACCTGTTCTACATGTAATGGAAGGTTTTTGTCTTCCTATCATCCTTCTGAGATGCAAGGCACAAATTGGAACAGTTATCTCTCATACTAGTAGATGAAGATGGTCTTTTAGATCTTCACTTGTGGACTTCGAGGCATAAGTAAAGTGTGATGTGTACCAGAAGAATGTTGGGGTTCAGATTGAAAATTAGGTTTACTGAAGCATCTCTCCAATTAAGTATGCAAAAAGCCTAATATTAGTTTTTACATTTGATCCGCTTTAGTGTGTTGCGTGCTATGACATGTTTCATACACCAAATGATTTGAGAAGTGGTGAAACTAATTATGATAGTTTATTTCCAGTATGTCGATAGATCTTAGGTGATATTACCACTAGAACATCGATCCTAACACAGAAGGCAGGCTATGCTGCAATGCTGTCATTTTTCATCCTCTCATAATGAACCATTGTTGCTTCTTTACAAAAAAAAAAATATTTGGGATTCTCAGGGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGC</genome_strand>
        <mrna_strand>AGGCTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTATTG.............................................................................................................................................................................................................................................................................TGTCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704826" ref_strand="+" ref_description="SGN-E704826 [FA25BE06]">
      <seq>atgaaatggagagagtattagatatagttttctaatcttttaagaaaaattgcataaaattgatttcaatttgcattccaaatttctcaaaaatctcaaaaaatgttgagaatttcttcttcttcttcttctttgcatgttccctcaatttgtggagcaccagttagtttcattctttctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcagaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtggttacagcttcatatagtgctgcgagtggtcctggaggcagttctggaggcgatcgggagatattggtgcagcatttacttgtcaaagaagatgatcagaaacttctactggaccttcagaaaaaaactgctgaaggagaggatctaagtgatctggccgttgagtattctatgtgtccatcaaaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttggtgcacctctgaataaggttgtaaagtgcaaaactaagtttgggtggcatttgttgcaagttctatctgagagggaggaatctgtacttgaacacatccagccaaacgagtttcatgtgaggttgcaagatccgtctttcctggaagaggctcaattgattgatgttcgagaaccagaggaagtggcccaggcttctgtcacaggatttcagattcttcctcttcgccaatttggagtctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18417" stop="14735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18117" g_stop="17778" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="469" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="561" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="15965" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="662" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15964" i_stop="15892" i_length="73">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15891" g_stop="15781" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="773" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15780" i_stop="15095" i_length="686">
            <donor d_prob="0.330" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15094" g_stop="15035" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="833" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E704826" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18117" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="15965"/>
          <exon e_start="15891" e_stop="15781"/>
          <exon e_start="15094" e_stop="15035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAATGGAGAGAGTATTAGATATAGTTTTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAGGTAATCAAAGAAATCCTTCTTCACTTGAACAACTCAGGAGCCTTGTTCTTACTTGTGTTACTGATATATGCAGGGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGTGTATGAGCTCGTTTGTTTCACTATTTTAGAATACTCACTTGCAGCTTTAATATCTTTTAGTTATTTATTTATTTAAGTTAATGAGCATACTGGACTTAAAATAGAAAAGAGTCCAAGGGGCTTCTCAAGTAATGAATGTGGCTTCAGTTGTGAAGCTTGTCCACATGGTTCCTGTCACACAACAAGGACAGAGAGAATAGGTATATGACTTATGGGAAAGCAATAGCTTTTGATGCTGAGCAGAATTGACCTGTCTGTCAGCCTTCAAATATAAGGAGAAGCTAATAGAAGCTGCCCACCAATCTTGGGGGTGCATAAAAACTAATTATGTTGTGATGTTGTTCTTAAGAAGATTCACTTTCAAGCCAGAAACTGCCTTGAAAGCTAGTAATATCCCGTGCAACCGTGGAATCTGTTCTTTATCTGCATCACACCTGGCTTTATGAGTAATAGTAGTATTAATTTTACTAACAATGACAATGACAAGTTGTGCGAGTCAATAGACTGGTCTTATTTGCTTCAAAATTAAATTCTTTGAGTGCTCCTATTAGACATATTTGGCGACATTGGAAAGTTAGAGCATGATACTTAAACATGTGTGAAAGAGGATGAAGTCACTATATTTTTCTTAAGAAGAGCAGGAATCACAGTTCCACTGTTCATTTCTGCTTTTTGTGTTGTGACAGGGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGG</genome_strand>
        <mrna_strand>ATGAAATGGAGAGAGTATTAGATATAGTTTTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAG.....................................................................................................................................................................................................................GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAG.........................................................................GGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGCTTCTGTCACAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412538" ref_strand="+" ref_description="SGN-E412538 [STM-16-O2]">
      <seq>aaaaaatgttgagaatttcttcttcttcttattcttctttgcatgttccctcaatttgtggagcaccagttaatttcgttctctctttcttgaatccatcttctcgtaaagtatcaaacttcactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcaaaagggtgtcaacaatgatgggtcgtagtcattcttgttcgagagtaattacagcttcatatagtgctgggagtggtactggaggcagttctggaggtgatcgggagatattggtacagcatttacttgtcaaagaagacgatcagaagcttctactggaccttcagaaaagaactgctgaaggagaggatctaagtgatctggccgttgagtattctatgtgtccatcaaaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttggtgcacctctgaataaggttgtaaagtgcaaaactaagtttgggtggcatttgttgcaagttctatctgagagggaggaatctgtacttgaacacatccagccgaacgaagttcatgtgaggttgcaagatccctctttcttggaagaagctcaattgattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18304" stop="15500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18020" g_stop="17778" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="375" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="467" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="15965" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="568" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15964" i_stop="15892" i_length="73">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15891" g_stop="15800" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="660" r_length="92" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E412538" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18020" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="15965"/>
          <exon e_start="15891" e_stop="15800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTGAGAATTTCTTCTTCTTC---TTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAGGTAATCAAAGAAATCCTTCTTCACTTGAACAACTCAGGAGCCTTGTTCTTACTTGTGTTACTGATATATGCAGGGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATG</genome_strand>
        <mrna_strand>AAAAAATGTTGAGAATTTCTTCTTCTTCTTATTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAATTTCGTTCTCTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTCACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAAAAGGGTGTCAACAATGATGGGTCGTAGTCATTCTTGTTCGAGAGTAATTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGGGAGTGGTACTGGAGGCAGTTCTGGAGGTGATCGGGAGATATTGGTACAGCATTTACTTGTCAAAGAAGACGATCAGAAGCTTCTACTGGACCTTCAGAAAAGAACTGCTGAAG.....................................................................................................................................................................................................................GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAG.........................................................................GGAGGAATCTGTACTTGAACACATCCAGCCGAACGAAGTTCATGTGAGGTTGCAAGATCCCTCTTTCTTGGAAGAAGCTCAATTGATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551492" ref_strand="+" ref_description="SGN-E551492 [TUS-55-L5]">
      <seq>atgttgagaatttcttcttcttcttcttctttgcatgttccctcaatttgtggagcaccagttagtttcattctttctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcagaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtggttacagcttcatatagtgctgcgagtggtcctggaggcagttctggaggcgatcgggagatattggtgcagcatttacttgtcaaagaagatgatcagaaacttctactggaccttcagaaaaaaactgctgaagaggatctaagtgatctggccgttgagtattctatgtgtccatcanaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18315" stop="15735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18015" g_stop="17778" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="365" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="456" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="16035" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="487" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E551492" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18015" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="16035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTG</genome_strand>
        <mrna_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTG-A-.....................................................................................................................................................................................................................-AGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCANAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689006" ref_strand="+" ref_description="SGN-E689006 [t3_tus_55_L05]">
      <seq>atgttgagaatttcttcttcttcttcttctttgcatgttccctcaatttgtggagcaccagttagtttcattctttctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcagaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtggttacagcttcatatagtgctgcgagtggtcctggaggcagttctggaggcgatcgggagatattggtgcagcatttacttgtcaaagaagatgatcagaaacttctactggaccttcagaaaaaaactgctgaagaggatctaagtgatctggccgttgagtattctatgtgtccatcanaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18315" stop="15735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18015" g_stop="17778" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="365" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="456" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="16035" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="487" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E689006" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18015" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="16035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTGGTG</genome_strand>
        <mrna_strand>ATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTG-A-.....................................................................................................................................................................................................................-AGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCANAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411487" ref_strand="+" ref_description="SGN-E411487 [STM-14-D10]">
      <seq>gttttctaatatttcaagaaaaattgcataaaattgatttcaatttgcattccaaatttctcaaaaatcccaaaaaatgttgagaatttcttcttcttcttcctctttgcatgttccctcaatttgtggagcaccagttaatttcattctctctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcaaaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtaattacagcttcatatagtgctgggagtggtcctggaggcagttctggaggtgatcgggagatattggtgcagcatttacttgtcaaagaagacgatcagaagcttctactcgaccttcagaaaagaactgctgaaggagaggatctaagtgatctggccgttgagtattccatgtgtccatctaaagaagatgggggaatgctgggctgggtgagaaaagggcaaatggtgccagaatttgaagaagctgcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18391" stop="15738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18091" g_stop="17778" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="443" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16431" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="535" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16065" g_stop="16038" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="563" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E411487" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18091" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16431"/>
          <exon e_start="16065" e_stop="16038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATGGTATGCTTCTTATGATTCTTATCTTCAAAAGTATTTTTCTTCTTTTTCACCCTTTTTTGGTGACAGGAATCAAATTTTCTTGTGATTATGTTTCCAGAATGTTAATTTCATACTAACAGGCCTTCAGATGATAGCAAACAAAATATCATACATGTGCTGTCTTATAAACATTTAGATGGAGATTTGACTTTTGTTATAGTTTTAAATTTCCATTTGTACATAACTACACCGTTGTTGCCTTTTGTTATTTGTATCCTGATAAGTACCTTTCTACTTTTTAGAAGATGCATTCTTGGTCACCTGGATGCCCAGGCTTACTTGACTTCATTTATTTGTTTTTGTAATTTAACTGTTAATATTATTAGGTGCCAGAATTTGAAGAAGCTGCATTTG</genome_strand>
        <mrna_strand>GTTTTCTAATATTTCAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCCCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCCTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAATTTCATTCTCTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAAAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTAATTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGGGAGTGGTCCTGGAGGCAGTTCTGGAGGTGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGACGATCAGAAGCTTCTACTCGACCTTCAGAAAAGAACTGCTGAAG.....................................................................................................................................................................................................................GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCCATGTGTCCATCTAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG.............................................................................................................................................................................................................................................................................................................................................................................GTGCCAGAATTTGAAGAAGCTGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557319" ref_strand="+" ref_description="SGN-E557319 [16100]">
      <seq>ttctaatatttcaagaaaaattgcataaaattgatttcaatttgcattccatatttctcaaaaatcccaaaaaatgttgagaatttcttcttcttcttattcttctttgcatgttccctcaatttgtggagcaccagttaatttcgttctctctttcttgaatccatcttctcgtaaagtatcaaacttcactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcaaaagggtgtcaacaatgatgggtcgtagtcattcttgttcgagagtaattacagcttcatatagtgctgggagtggtactggaggcagttctggaggtgatcgggagatattggtacagcatttacttgtcaaagaagacgatcagaagcttctactggaccttcagaaaagaactgctgaaggagaggatctaagtgatctggccgttgagtattctatgtgtccatcaaaagaagatgggggaatgctgggctgggtgagaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18388" stop="16137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18088" g_stop="17778" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16736" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="443" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16522" g_stop="16438" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="528" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E557319" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18088" e_stop="17778"/>
          <exon e_start="16864" e_stop="16736"/>
          <exon e_start="16522" e_stop="16438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTC---TTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAGGTTAGTTTCAACTTTATTTCTTAGTAAGGAAGGCCCCAGTAACATTCCCATACAAATTTAAGAAGCTGAGAACAAATGAGGACTAAATCTATAAGTAAGTTATTCATATGTCATGATTAAATTTGAGAACTGGGTATGTTAGTATGAAACAAGTTCTCTCTTGATGCTTGTCCTTTCATTTATATTGTTGACTGAAATGCTTGTCACAATCAGGAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGG</genome_strand>
        <mrna_strand>TTCTAATATTTCAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCATATTTCTCAAAAATCCCAAAAAATGTTGAGAATTTCTTCTTCTTCTTATTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAATTTCGTTCTCTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTCACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAAAAGGGTGTCAACAATGATGGGTCGTAGTCATTCTTGTTCGAGAGTAATTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGGGAGTGGTACTGGAGGCAGTTCTGGAGGTGATCGGGAGATATTGGTACAGCATTTACTTGTCAAAGAAGACGATCAGAAGCTTCTACTGGACCTTCAGAAAAGAACTGCTGAAG.....................................................................................................................................................................................................................GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468909" ref_strand="+" ref_description="SGN-E468909 [cSTB-6-N17]">
      <seq>cgagggttttctaatatttcaagaaaaattgcataaaattgatttcaatttgcattccaaatttctcaaaaatcccaaaaaatgttgagaatttcttcttcttcttcctctttgcatgttccctcaatttgtggagcacccagttaatttcattctctctttcttgaatccatcttctcgtaaagtatcaaacctttacctcgcttagctttaccttcactcgacaaccccttttccccaattcaccgtaatttccagtttcccacccttcaaaagggtgtcaacaatgatgggtcgtacctcattcttgttcgagagtaattacagcttcatatagtgctgggagtggtcctggaggcagttctggaggtgatcgggagatattggtgcagcatttacttgtcaaagaagacgatcagaagcttctactcgaccttcagaaaagaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18391" stop="16440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18096" g_stop="17778" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16740" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="452" r_length="125" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E468909" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18096" e_stop="17778"/>
          <exon e_start="16864" e_stop="16740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGTTTTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCA-CCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAA-CTTTA-CTCGCTTAGCTTTA-CTTCACTCGACAA-CCCTTTTCCCCAATTCA-CGTAATTTCCAGTTTCCCA-CCTTCAGAAGGGTGTCAACAATGATGGGTCGTA-CTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCT</genome_strand>
        <mrna_strand>CGAGGGTTTTCTAATATTTCAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCCCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCCTCTTTGCATGTTCCCTCAATTTGTGGAGCACCCAGTTAATTTCATTCTCTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACCTTTACCTCGCTTAGCTTTACCTTCACTCGACAACCCCTTTTCCCCAATTCACCGTAATTTCCAGTTTCCCACCCTTCAAAAGGGTGTCAACAATGATGGGTCGTACCTCATTCTTGTTCGAGAGTAATTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGGGAGTGGTCCTGGAGGCAGTTCTGGAGGTGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGACGATCAGAAGCTTCTACTCGACCTTCAGAAAAGAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264172" ref_strand="+" ref_description="SGN-E264172 [cLEG-64-D10]">
      <seq>tgttgagaatttcttcttcttcttcttctttgcatgttccctcaatttgtggagcaccagttagtttcattctttctttcttgaatccatcttctcgtaaagtatcaaactttactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcagaagggtgtcaacaatgatgggtcgtactcattcttgttcgagagtggttacagcttcatatagtgctgcgagtggtcctggaggcagttctggaggcgatcgggagatattggtgcagcatttacttgtcaaagaagatgatcagaaacttctactggaccttcagaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18314" stop="16443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18014" g_stop="17778" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16743" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="359" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E264172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18014" e_stop="17778"/>
          <exon e_start="16864" e_stop="16743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACT</genome_strand>
        <mrna_strand>TGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470785" ref_strand="+" ref_description="SGN-E470785 [cSTB-20-D17]">
      <seq>aaaaaatgttgagaatttcttcttcttcttattcttctttgcatgttccctcaatttgtggagcaccaattaatttcgttctctctttcttgaatccatcttctcgtaaagtatcaaacttcactcgcttagctttacttcactcgacaacccttttccccaattcacgtaatttccagtttcccaccttcaaaagggtgtcaacaatgatgggtcgtcatcattcttgttcgagagtaattacagcttcatatactgctgggagtgtgtactggaggcagttctggaggtgatccgcagatattggtacagcatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="18304" stop="16493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18020" g_stop="17778" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16864" g_stop="16793" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="319" r_length="73" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E470785" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18020" e_stop="17778"/>
          <exon e_start="16864" e_stop="16793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTGAGAATTTCTTCTTCTTC---TTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAGGTATTTGTTTGATTCTATGAATAATCTCTTTCTATATTAGTTTTTGTTGTTGTTTGTAGCTGAAGAATGCTCTGTTGAGGTTGAGCCCTAGTGTAACAGTAGAGTTAAAATGTAGGTCAAAATGGAGGGGTGGGGTAGAGTTGTTCTTTTTTGATGATGTGTAGGCAGTGGCAAAGCTGGGATTTCCGAATGAAAAAGCTAAAAGATTCAAAATTTACTATATATATACCCAAAGAATGATTCTTTTTGATAACCTTGGTGTACGAGCTAGCTTACGACACCTATACTAATTCCATGAGATAGACCAGGTAAGTCTATCAATCAAGACAGTGTGTTTGTCTCTGCTGGAATTTTGACATGAGACCTTAACCCAAAGAAATGATTTTGACCTTTGTGTATACGGTGCACTTTCTGGTTGTACCTCTGCCCCTGCCTGTAGGTCATGGTTTGAGATGTAGAAACAGCCAACTCGCAGAAATAATAAGGGAAGGTAGCACGATTTGTAGTTTACTGGTACCATAATTTCCAGGCAATAAGTGTGAGGTCCATTCTCACTTGACCTTGTGTATATAATGTACTTTTCCTCCCTAGCTCTGCCCCATGCCTGTAAGTCAAGGTTTGAGCTGTAGAAACAGCCTATTTGTAGAAATACTAGTGGAAAGTAGCGCATATTGTAGTTTAGTGGTACTGAAGTTTCGCGCAAGTTGGCCCGGCACCACAGTTATCTCCAAAAAAAAAGTGGCTTCATCAATTATCATAAATGTGAGTGTAGCTATTATAGGTTTTGTCTTTATGACGTCCTCTGGATCTTGAGATTGCATAGGGGTAGTTCCAGAATCTGAAGGGCGAAGAGAGTTCTTTTCCTTTTGCTATCATCTGATACATGCTGAATCTCACAATATATAACTTTCAGCTTCATATAGTGCTGCGAGTG-GTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTAC</genome_strand>
        <mrna_strand>AAAAAATGTTGAGAATTTCTTCTTCTTCTTATTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAATTAATTTCGTTCTCTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTCACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAAAAGGGTGTCAACAATGATGGGTCGTCATCATTCTTGTTCGAGAGTAATTACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATATACTGCTGGGAGTGTGTACTGGAGGCAGTTCTGGAGGTGATCCGCAGATATTGGTACAGCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308406" ref_strand="+" ref_description="SGN-E308406 [cLEY-25-O1]">
      <seq>tcgtcataggaatgcttgtctatacttggaggccatcaagtcacctaaaaagtcaggaagttgattgccactgttaactgcttgtctatacttggaggccatcaaatcgcctaaaaaatcaggaaattgattgcgactgttaacttccgtcccttgtcacatttgagaatgaagataggacaccattctccaacttccacaagaagtaaacgagggatcaagacatgcatggtgaattgtttttcagtagcctttcaaaccactgaaaatcgttatcaatcaatggaggtttgacaggattattgctcaaatccattgctcttttaaaatgcatggagtctgtaccattcatgtccttatgaatttgttgcgatgccagagtaaagttggttgctatatatctagaagtacagaaacaggggctgaagtagaagctcagatacgggtgcagccaaacccactagtttttttgctcgtgtatttgtgttacaaaattcattgaatataaacacataaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="19388" stop="18267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19088" g_stop="18567" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E308406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19088" e_stop="18567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCATAGGAATGCTTGTCTATACTTGGAGGCCATCAAGTCACCTAAAAAGTCAGGAAGTTGATTGCCACTGTTAACTGCTTGTCTATACTTGGAGGCCATCAAATCGCCTAAAAAATCAGGAAATTGATTGCGACTGTTAACTTCCGTCCCTTGTCACATTTGAGAATGAAGATAGGACACCATTCTCCAACTTCCACAAGAAGTAAACGAGGGATCAAGACATGCATGGTGAATTGTTTTTCAGTAGCCTTTCAAACCACTGAAAATCGTTATCAATCAATGGAGGTTTGACAGGATTATTGCTCAAATCCATTGCTCTTTTAAAATGCATGGAGTCTGTACCATTCATGTCCTTATGAATTTGTTGCGATGCCAGAGTAAAGTTGGTTGCTATATATCTAGAAGTACAGAAACAGGGGCTGAAGTAGAAGCTCAGATACGGGTGCAGCCAAACCCACTAGTTTTTTTGCTCGTGTATTTGTGTTACAAAATTCATTGAATATAAACACATAAAATTTT</genome_strand>
        <mrna_strand>TCGTCATAGGAATGCTTGTCTATACTTGGAGGCCATCAAGTCACCTAAAAAGTCAGGAAGTTGATTGCCACTGTTAACTGCTTGTCTATACTTGGAGGCCATCAAATCGCCTAAAAAATCAGGAAATTGATTGCGACTGTTAACTTCCGTCCCTTGTCACATTTGAGAATGAAGATAGGACACCATTCTCCAACTTCCACAAGAAGTAAACGAGGGATCAAGACATGCATGGTGAATTGTTTTTCAGTAGCCTTTCAAACCACTGAAAATCGTTATCAATCAATGGAGGTTTGACAGGATTATTGCTCAAATCCATTGCTCTTTTAAAATGCATGGAGTCTGTACCATTCATGTCCTTATGAATTTGTTGCGATGCCAGAGTAAAGTTGGTTGCTATATATCTAGAAGTACAGAAACAGGGGCTGAAGTAGAAGCTCAGATACGGGTGCAGCCAAACCCACTAGTTTTTTTGCTCGTGTATTTGTGTTACAAAATTCATTGAATATAAACACATAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724874" ref_strand="+" ref_description="SGN-E724874 [FC25BF07]">
      <seq>cgattggcggccaaatcggccgaattcccatggggatccgatgattactaataataaccgaaagaaaaaaaaaaatctgttttacgtatttccgtaattgaaaattgtacaatctcaccatgtcggtttgtactccccggataatcaccggcaaattgtcgtccccgatagcaaggtatcatattccggtaacaaaacttccagctgtccggtcaccggattatctctcttccacatctgttcgtcatttcataagcaatactcgccggccgaactcaatcgttagcaaatcaaggaaaacgaaattctacgtaattgcggtagcgaaatcgaccggtgtgttccgccgcggcggacccgatggcggaaaaaatggggaatggaggacaaggaggaggtgtgcggtgggaaatcaatttgtggaaattaatgaaaaccggaaaagtattaatcgactggcgaaggtggcggttgcaccaacggctacgggggtgctaggtgtagggaatcgcgtgctttacaagttggcgttagtgcctttgaaaaactatcctttcttcttggctcaacttgccactttcggatatgtactcatatacttctctatcttatacgtacggtatcatactggcaaggttactgatgaaatgctttcccttccaaaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="27323" stop="23370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27021" g_stop="26483" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="583" r_length="540" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26482" i_stop="23757" i_length="2726">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23756" g_stop="23670" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="670" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E724874" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27021" e_stop="26483"/>
          <exon e_start="23756" e_stop="23670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTAATAATAACCGAAAG-AAAAAAAAAATCTGTTTTACGTATTTCCGTAATTGATAATTGTACAATCTCACCATGTCGGTTTGTACTCGCCGGATAATCACCGGCGAATTGTCGTCGCCGATAGCAAGGTATCATATTCCGGTAACAAAACTTCCAGCTGTCCGGTCACCGGATTATCTCTCTTCCACATCTGTTCGTCATTTCATAAGCAATACTCGCCGGCCGAACTCAATCGTTAGCAGATCAAGGAGAACGAAATTCTACGTAATTGCGGTAGCGGAATCGACCGGTGTGTTCCGCCGCGGCGGACGCGATGGCGGAGAGAATGGGGAATGGAGGACGAGGAGGAGGTGTGCGGTGGGAGATCAAGTTGTGGAGATTAATGAGAACCGGAAAAGTAGTAATCGACTGGCGGAGGTGGCGGTTGCAGCGACGGCTACGGTGGTGCTAGGTGTAGGGAATCGCGTGCTTTACAAGTTGGCGTTAGTGCCTTTGAAGAACTATCCTTTCTTCTTGGCTCAACTTGCCACTTTCGGGTAATTTTCTTTTCCTAACAATTCTCAATCTTAACCTTTTAAATGAGTTTTAAGTGTAAAATAATTTTATCTCAAAATTATAATATTATTTTTAATTTTAAAATAATTTATTTTCAATCAAATAACTCATCAGGTTAGTAAGAACGATAGAATTTTCTAATTTGTGAAAATAGATAAATATAATAAAATATCTATTCAGAGTCTATTTCCTTTTTTGACCTTTGAGCTAATCAAAAAAGAAATTCTAGTTATGAATATATATTTTTCAAGTGCTTATTAATTTTTAGAAAGCAAAATGAGTACAGAATTATAATTTTTAATATAACTAACCAACTTATCACGCCTCAACTAATTCTACAGGTATGTAGAAAATTCTGTTAGGAGCACTATCTCCAAATAAATCTTAAAATCCACGATCTAGATTTAATTAAAGTTTAAATGCATGCACTGAATATCAAATGAAAAATAGTATTTTCTCTGTCCCTATTTACTTGTCCATGTTTCCTCTCTTAGATGTCTCTATTTACTTGTCCATTTTGACAATCACGAAAGTTCACATTTATTTAAACTTCTTGAAAATTTCTAAGTTTTAATTCATCTTTTTTGAAATCATATTTAATAAGGGTACAATTATAATTTCACTATGTTAATTATTGTTATCTTAATATATGTGTCTTTTTTAAAGTGGACAACTAAATAGGGACAGAGGAAGTACATATTATCTCCTACTGACTCAAGTATCGAATGATGATTTTTGAAAATATAATTAATAATTTTTTTTGTAGTTTCCTTATTAACCCACAAATTTAAATACGAAGGAGAATTTACCCTTCCGCGATATTTTAGGTAACCCCAGTGAATAGTGTAAGTCAACTATCTATTTGTTATTTCCTGTTATTTCCTTGGATCTATTATACTTCACCTTTTTTTCTCCGAGTATTTTAGCAATACATTAATTAAGAAATAATTTAATATATTCCACATTTATTAAAGTAAATTTAGTAAATCGATACTCTTTTTTTATAGTTTTTTTGCTTTCATAATGTAGGGATAAGTTATGCATACACTTAATCATCTTCAAACTCTACCTATGAAATTATATTAAATATATTATCTTGTTATTGTTCACTTATTAAATATAGAATTTTTTTCTTATTAATGCTCCATGTAAATCCATTTTGTAATGTGTGCCCTTAGCTGAAAGACAAAAGTTCCTTCACAAAAATAAAGAAAATGGAAAGCCACGTGAGAAATTCCAAGGTCACGTGACATGATGTCAAGGGTAATAGAGTCATTTAAAGGTACTGCCTTTTTACGTCAGTGTCAGTCCTTGTCATTCTTTCCATAGATGGGGGTAATATAGTAATTCAATTTTGATAATGCATAGTATTAGTGATTCACAATGAAAGAATAAAACTTTGCATAGTCTCTTTCAATTTACTATCACTTTCTTTACCTAGAATGTATTCTTTTGACTGCACCTTGGACCCACTGGACCATATAACCATAGTTTTCTAGTCATTCTAATGATGCATCATCAGTTATTGGGGGTGTAGGTAAAATGTTATCGTCGTGCCAAAATTTATAGTAATTAATAGTAAGTTTATTTCTTAACCAAGTCCATCAAGTGCTACATTTGACTCTAACCTGAGCTATGCTCAGCCCATCACTTAAGCCTCACCATTGATAGGATGTTGATGTTACTCAATGATACCTCAACACAATGTCTGTGCTGGGAATCAAACCACTTATTAAGATAAAACGCTTATCATCATGTCAAAAATGAGCACAACTTTATTTATTAACCAAGTTCATCAAGAAAGCACTATGTTTGACCATGACACTGATCGGGGTCATCCCATAGGCAGAATGGTAGTGTTACCTTAACAGTTGAAAATTTGCTTTGTATATTTGAGAATTATGTGTGACATATTTGCATTTGTTTAATTTTCCTTCTTAAATTTAAATCCCTGTCCCCATCATTGTTAATCTTTGTGGTTGGAAATAAGAAGTGGTTCTAATCTGTGATAATTTAAAGGGAAAAGATTAAGTATTACCTCTACAAACAAGTTGAACAATATGCTTACTCTATATATACAATGTCACTGGAAAAATAGTGCTCCTGCAGGATGATTTTGCTCTACATTGTTTGTGATACTTGATGAATGGGATAACTTTATTATGCAATTTATTAGGGGAGATTGAATTGTGTGCCCTGTACCTTTTTTTTGCCTGGTTTCCAGATTTGGTTCAAATGATGCTTTAAATGAGATGAATCAGAAACAGCAGAACTGTTATATTAATGTCACATTGGTTCTGATGAACTGGCTATTATAATTAACTCTCTATCAGCCGCACAAGTTCAGTTTTAAGCCAACTTTAGGTAGTATTGAAACTGCAAGGATCTGGTCCTATCCGACCCAACCCCTGAACTTAGAAGAGGTGGCTTGTTGGGACGGTAGAACGGGGATTCATGAACTCTTTGAAAGTGTGACTAAAGTAATTGTAAATATTCCTCTATCACTTAACTCACATTACCAAGACTTAAGAAAATAAAAATCATATGTATAAGTTCTTTAGTTTCTCACTGGATATGCTGAATACCTGAGTACAGTGCATCAATAATAAAAATTAGTAGACACATTTGTTACTGATTTTTTCATATCCAATTGTTTTGTTTAATAGTTGGAATAACTTAATTGCTTCTTTTGTCTTCTTTCACCCAGATATGTACTCATATACTTCTCTATCTTATACGTACGGTATCATACTGGCAAGGTTACTGATGAAATGCTTTCCCTTCCAAAAATTCC</genome_strand>
        <mrna_strand>ATTACTAATAATAACCGAAAGAAAAAAAAAAATCTGTTTTACGTATTTCCGTAATTGAAAATTGTACAATCTCACCATGTCGGTTTGTACTCCCCGGATAATCACCGGCAAATTGTCGTCCCCGATAGCAAGGTATCATATTCCGGTAACAAAACTTCCAGCTGTCCGGTCACCGGATTATCTCTCTTCCACATCTGTTCGTCATTTCATAAGCAATACTCGCCGGCCGAACTCAATCGTTAGCAAATCAAGGAAAACGAAATTCTACGTAATTGCGGTAGCGAAATCGACCGGTGTGTTCCGCCGCGGCGGACCCGATGGCGGAAAAAATGGGGAATGGAGGACAAGGAGGAGGTGTGCGGTGGGAAATCAATTTGTGGAAATTAATGAAAACCGGAAAAGTATTAATCGACTGGCGAAGGTGGCGGTTGCACCAACGGCTACGGGGGTGCTAGGTGTAGGGAATCGCGTGCTTTACAAGTTGGCGTTAGTGCCTTTGAAAAACTATCCTTTCTTCTTGGCTCAACTTGCCACTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTACTCATATACTTCTCTATCTTATACGTACGGTATCATACTGGCAAGGTTACTGATGAAATGCTTTCCCTTCCAAAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717146" ref_strand="+" ref_description="SGN-E717146 [FB19BA08]">
      <seq>agaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcagagctaaacttgaggataaactaactagactagacaaatgttatccaagtagtctttttgtatcccataatgtttaagactgtacacaccactaccctctctagactctacttgtggggttgcacgaggtttgttattgttgcataatgtgttaggtatctgctttggaaccttactcattactcattagagttcgtgctgggaagttccactttggggcttaacgctctttactaagagcgattttatcctcaagatcgaactcaaaatcttctcttaatgattanaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29172" stop="27749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28872" g_stop="28816" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28593" g_stop="28049" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="602" r_length="545" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="627"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E717146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28872" e_stop="28816"/>
          <exon e_start="28593" e_stop="28049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACTGTACACACCACTACCCTCTCTAGACTCTACTTGTGGGGTTGCACGAGGTTTGTTATTGTTGCATAATGTGTTAGGTATCTGCTTTGGAACCTTACTCATTACTCATTAGAGTTCGTGCTGGGAAGTTCCACTTTGGGGCTTAACGCTCTTTACTAAGAGCGATTTTATCCTCAAGATCGAACTCAAAATCTTCTCTTAATGATTA</genome_strand>
        <mrna_strand>AGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTTGTATCCCATAATGTTTAAGACTGTACACACCACTACCCTCTCTAGACTCTACTTGTGGGGTTGCACGAGGTTTGTTATTGTTGCATAATGTGTTAGGTATCTGCTTTGGAACCTTACTCATTACTCATTAGAGTTCGTGCTGGGAAGTTCCACTTTGGGGCTTAACGCTCTTTACTAAGAGCGATTTTATCCTCAAGATCGAACTCAAAATCTTCTCTTAATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623414" ref_strand="+" ref_description="SGN-E623414 [88506]">
      <seq>ccggccggtcactgaatttagctccggcgtcgtcaacagtcaccgagaaaacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtctttttgtgtcccataatgtttaagactgagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33002" stop="27947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32702" g_stop="32523" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="252" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="346" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28244" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="690" r_length="344" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E623414" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32702" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACTGTACACACCA</genome_strand>
        <mrna_strand>CCGGCCGGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAAAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTTGTGTCCCATAATGTTTAAGACTG-AGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434017" ref_strand="-" ref_description="SGN-E434017 [STM-59-G14]">
      <seq>ctgaccaagcccaagatgccaagaagatggagaaacttaacaccatttttttccccttgatgtctcgtggtccagacggtattacttcttcaaactttcttcacatggtcccttgtttgtttggtataagtaacatccaatgacaatctgatctttactaattactcacatgtccctaagaagttctattcggtacttgcatagttgcatctcctcgatgctccagtcatcgtaatgctctgcaatttcttttcgttgcagctgatatatctgaagtgggtggcaaagaacaaatggaggcccaagcccctaagaaaggaagaggaaggaaccaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaccctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtctttttgtgtcccataatgtttaagactgagaaaaaaaatgtttaagactgggcaaaaaaaaaaaaaaaaaaaccaatttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29193" stop="27947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28893" g_stop="28726" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28725" i_stop="28676" i_length="50">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.33"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28675" g_stop="28254" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="596" r_length="428" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="642"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E434017" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434017" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28893" e_stop="28726"/>
          <exon e_start="28675" e_stop="28254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAA-----------GAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACT</genome_strand>
        <mrna_strand>CTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACACCATTTTTTTCCCCTTGATGTCTCGTGGTCCAGACGGTATTACTTCTTCAAACTTTCTTCACATGGTCCCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTGATCTTTACTAATTACTCA..................................................CATGTCCCTAAGAAGTTCTATTCGGTACTTGCATAGTTGCATCTCCTCGATGCTCCAGTCATCGTAATGCTCTGCAATTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCCCAAGCCCCTAAGAAAGGAAGAGGAAGGAACCAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAACCCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTTGTGTCCCATAATGTTTAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434016" ref_strand="+" ref_description="SGN-E434016 [STM-59-G14]">
      <seq>ctgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacggtattacttcttcaaactttcttcacatggtaccttgtttgtttggtataagtaacatccaatgacaatctgatctttactaattactcacatgtacctaagaagttctattcggtacttgcatagttgcatctcctcgatgctccagtcatcgtaatgctctgcaatttcttttcgttgcagctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtctttttgtgtcccataatgtttaagactgagaaaaaaaatgtttaagactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29193" stop="27947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28893" g_stop="28726" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28725" i_stop="28676" i_length="50">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.33"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28675" g_stop="28254" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="596" r_length="428" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E434016" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28893" e_stop="28726"/>
          <exon e_start="28675" e_stop="28254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAA-----------GAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACT</genome_strand>
        <mrna_strand>CTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACGGTATTACTTCTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTGATCTTTACTAATTACTCA..................................................CATGTACCTAAGAAGTTCTATTCGGTACTTGCATAGTTGCATCTCCTCGATGCTCCAGTCATCGTAATGCTCTGCAATTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTTGTGTCCCATAATGTTTAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623531" ref_strand="+" ref_description="SGN-E623531 [88624]">
      <seq>tagtggatcccccgggcctgcaggtacttttcaaacccctgagcagcaaaacttgaaaacctcgccggccggtcactgaatttagctccggcgtcgtcaacagtcaccgagaaaacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcgcaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttatacctgcaaggaatttctctctaacttctttttgtattattagtggaacgcatcttttttgctttttgaagatagtccttttaatttgcaagctctggtatcttaacttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtctttttgtgtcccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33045" stop="27965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32742" g_stop="32523" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="247" r_length="222" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="410" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28258" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="740" r_length="330" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E623531" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32742" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCAAACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAA</genome_strand>
        <mrna_strand>ACTTTTCAAACCC-CTGAGCAGCAAAACTTGAAAACCTCGCCGGCCGGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAAAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCGCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTATACCTGCAAGGAA--TTTCTCTCTAACTTCTTTTTGTATTATTAGTGGAACGCATCTTTTTTGCTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATCTTA-A-CTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTTGTGTCCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620898" ref_strand="+" ref_description="SGN-E620898 [71604]">
      <seq>aaaattgaaaacctcgccggccggtcactgaatttagctccggcgtcgtcaacagtcaccgagaaaacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaagcaagtactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatctttgtggtgtggtggaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtcttttggtgtcccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33018" stop="27967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32718" g_stop="32517" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32516" i_stop="32437" i_length="80">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="274" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="368" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28267" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="690" r_length="322" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E620898" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32718" e_stop="32517"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCAT</genome_strand>
        <mrna_strand>AAAATTGAAAACCTCGCCGGCCGGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAAAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGCAAGT................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTGTGGTGTGGTGGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTGGTGTCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688205" ref_strand="+" ref_description="SGN-E688205 [t3_tus_11_c12]">
      <seq>ggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatataggggatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcagagctaaacttgaggataaactaactagactagacnaatgttatccaagtagtctttttgtatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32996" stop="27969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32696" g_stop="32523" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="340" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28268" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="666" r_length="326" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E688205" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32696" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCA</genome_strand>
        <mrna_strand>GGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGGGGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACNAATGTTATCCAAGTAGTCTTTTTGTATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550577" ref_strand="+" ref_description="SGN-E550577 [TUS-11-C12]">
      <seq>ggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatataggggatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcagagctaaacttgaggataaactaactagactagacaaatggtatccaagtagtctttttgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32996" stop="27971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32696" g_stop="32523" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="340" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28271" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="663" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E550577" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32696" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATC</genome_strand>
        <mrna_strand>GGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGGGGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGGTATCCAAGTAGTCTTTTTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455503" ref_strand="+" ref_description="SGN-E455503 [cSTS-26-B5]">
      <seq>acttttcaaacccctgagcagcaaaaattgaaaaccctcgccggccggtcacctgaatttagctccggcgtcgtcaaccgtcaccgagaaaaccgcctcgattagcagttacatataccatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgaatttcgttgagaagatccgtaccagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagaccaatgttatccaagtagtcttttttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33042" stop="27972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32742" g_stop="32523" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.85"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="299" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="393" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28272" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="711" r_length="318" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E455503" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32742" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCAAACCCCCTAAGGAGCAAAAATTGAAAA-CCTCGCCGGCCGGCCA-CTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAA-CG-CTCGATTAGCAGTTATATATAC-ATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATG-ATTTTGTTGAG-AGATCCGTA-CAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAG-CCTTTTTGTAT</genome_strand>
        <mrna_strand>ACTTTTCAAA-CCCCTGAGCAGCAAAAATTGAAAACCCTCGCCGGCCGGTCACCTGAATTTAGCTCCGGCGTCGTCAACCGTCACCGAGAAAACCGCCTCGATTAGCAGTTACATATACCATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGAATTTCGTTGAGAAGATCCGTACCAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACCAATGTTATCCAAGTAGTCTTTTTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349153" ref_strand="+" ref_description="SGN-E349153 [cTOS-2-J24]">
      <seq>aaccccctaaggagcaaaaattgaaaacctcgccggccggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatatagcagatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcagagctaaacttgaggataaactaactagactagacaaatgttatccaagtagtcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33034" stop="27976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32734" g_stop="32523" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="284" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="378" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28276" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="696" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E349153" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32734" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTT</genome_strand>
        <mrna_strand>AACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425857" ref_strand="-" ref_description="SGN-E425857 [STM-45-N15]">
      <seq>tttcaaacccttgagcagcaaaaattgaaaacctcgccggcccgtcactgaatttagctccggcgtcgtcaacagtcaccgagaaaacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcccctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgttatccaagtagtctttggtgtaccctaaaaaaaaaaacctttttgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33039" stop="27978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32739" g_stop="32523" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="288" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="382" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28287" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="684" r_length="302" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="715"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E425857" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425857" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32739" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAA</genome_strand>
        <mrna_strand>TTTCAAA-CCCTTGAGCAGCAAAAATTGAAAACCTCGCCGGCCCGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAAAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCCCCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346707" ref_strand="+" ref_description="SGN-E346707 [cTOF-28-H13]">
      <seq>ggccggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatatagcagatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcagagctaaacttgaggataaactaactagactagacaaatgttatccaagtagtcttttttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33000" stop="27973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32700" g_stop="32523" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="250" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="344" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28287" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="651" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="676"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E346707" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32700" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAA</genome_strand>
        <mrna_strand>GGCCGGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425856" ref_strand="+" ref_description="SGN-E425856 [STM-45-N15]">
      <seq>acttttcaaacccctgagcagcaaaaattgaaaacctcgccggccggtcactgaatttagctccggcgtcgtcaacagtcaccgagaaaacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcagggaatttctctccaacttctttttgtattattagtggaacacatcttttttgtttttttgaagatagtccttttaatttgcaagctctggtatcttagcttatttatctttgcagagcttaacttgaggataaactaactagactagacaaatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33042" stop="27992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32742" g_stop="32523" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="291" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="385" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28292" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="682" r_length="297" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E425856" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32742" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCAAACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTG-CTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTA</genome_strand>
        <mrna_strand>ACTTTTCAAA-CCCCTGAGCAGCAAAAATTGAAAACCTCGCCGGCCGGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAAAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAGGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTGTTTTTTTGAAGATAGTCCTTTTAATTTGCAAGCTCTGGTATC-T-TAGCTTATTTATCTTTGCAGAGCTTAACTTGAGGATAAACTAACTAGACTAGACAAATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269343" ref_strand="+" ref_description="SGN-E269343 [cLEM-18-E10]">
      <seq>gccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatatagcagatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatctttgcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32995" stop="28033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32695" g_stop="32523" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="245" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="339" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28333" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="600" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E269343" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32695" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGA</genome_strand>
        <mrna_strand>GCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551256" ref_strand="+" ref_description="SGN-E551256 [TUS-11-C11]">
      <seq>aggggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatatagcagatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32996" stop="28038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32699" g_stop="32523" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="249" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="343" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28338" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="599" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E551256" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32699" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTT</genome_strand>
        <mrna_strand>AGGGGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688204" ref_strand="+" ref_description="SGN-E688204 [t3_tus_11_c11]">
      <seq>aggggccactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagttatatatacatatatttatatatagcagatacagagagaagaagaatggtgtatatcacttcctgggatgattttgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctcttactgctgtgaagataaatttttgaaacctgcaaggaatttttctctccaacttctttttgtattattagtggaacagatcttttttgctttttgaagatagcccttttaatttgcaagctctgatatcttatagcttatttatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32996" stop="28038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32699" g_stop="32523" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="249" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="343" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28338" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="599" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E688204" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32699" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTT</genome_strand>
        <mrna_strand>AGGGGCCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596745" ref_strand="-" ref_description="SGN-E596745 [40234]">
      <seq>ctcgccggccggtcactgaatttagctccggcgtcgtcaacagtcaccgagaanacgctcgattagcagttatatatacatatatttatatatagcagatacatagagaagaagaatggtgtatatcacttcctgggatgatttcgttgagagatccgtacagttgtttcgcgccgatcccgagaaaactcgctatgtgatgaaatacagacattctgatggtaaattggttctcaaggtcactgatgataaagagtgtatcaagtttaagactgaccaagcgcaagatgccaagaagatggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacgctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttatacctgcaaggaatttctctctaacttctttttgtattattagtggaacgcatcttttttgctttttgaagatagtccttttaatttgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="33006" stop="28068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32706" g_stop="32523" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="256" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="350" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28361" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="579" r_length="229" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E596745" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32706" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGCCGGCCACTGAATTTAGCTCC-G-G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGA</genome_strand>
        <mrna_strand>CTCGCCGGCCGGTCACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAANACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACATAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTCGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGTTTAAGACTGACCAAGCGCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTATACCTGCAAGGAA--TTTCTCTCTAACTTCTTTTTGTATTATTAGTGGAACGCATCTTTTTTGCTTTTTGAAGATAGTCCTTTTAATTTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404555" ref_strand="+" ref_description="SGN-E404555 [PPC-14-M12]">
      <seq>agctgaccaagcccaagatgccaagaagacggagaaacttaacaacatttttttcaccttgatgtctcgtggtccagacggtattacttcttcaaactttcttcacatggtaccttgtttgtttggtataagtaacatccaatgacaatctgatctttactaattactcacatgtacctaagaagttctattcggtacttgcatagttgcatctcctcgatgctccagtcatcgtaatgctctgcaatttcttttcgttgcagctgatatatctgaagtgggtggcaaagaacaaatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattcttcgatgggtttgttgctgcaactctctactgctgtgaagataattttttaaacctgcaaggaatttctctccaacttctttttgtattattagtggaacacatctttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="29196" stop="28099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28896" g_stop="28726" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28725" i_stop="28676" i_length="50">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.33"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28675" g_stop="28397" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="456" r_length="286" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E404555" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28896" e_stop="28726"/>
          <exon e_start="28675" e_stop="28397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAA-----------GAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGC</genome_strand>
        <mrna_strand>AG-CTGACCAAGCCCAAGATGCCAAGAAGACGGAGAAACTTAACAACATTTTTTTCACCTTGATGTCTCGTGGTCCAGACGGTATTACTTCTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTGATCTTTACTAATTACTCA..................................................CATGTACCTAAGAAGTTCTATTCGGTACTTGCATAGTTGCATCTCCTCGATGCTCCAGTCATCGTAATGCTCTGCAATTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAAATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTC-TACTGCTGTGAAGAT-AATTTTTTAAACCTGCAAGGAA--TTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACACATCTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282537" ref_strand="+" ref_description="SGN-E282537 [cLER-18-F23]">
      <seq>cactgaatttagctccggcgtcgtcaacagtcaccgagagaacgctcgattagcagatatatatacatatatttatatatagcagatacagagagaagaagaatggggtatatcacttcctgggatgattttgttgagagatccgtacagatgtttcgcgccgatcccgagaaaactcgctatgtgaggaaatacagacattctgatggtaaattgggtctcaaggtcactgatgataaagagtgtatcaaggttaagactgaccaagcccaagatgccaagaagatggagaaacttaacaacattttttttaccttgatggctcggggtccagacgctgatatatctgaagggggtggcaaagaacagatggaggcacaagcacctaagaaaggaagaggaaggaaacaataattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="32993" stop="28212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32693" g_stop="32523" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32436" g_stop="32368" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="243" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28909" g_stop="28816" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="337" r_length="94" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28593" g_stop="28512" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="419" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E282537" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32693" e_stop="32523"/>
          <exon e_start="32436" e_stop="32368"/>
          <exon e_start="28909" e_stop="28816"/>
          <exon e_start="28593" e_stop="28512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGAATTTAGCTCCG--G-CGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGTGTTGTTTGACTCCGATGAGTTCATCATTTGTTTTTTTTCGTATAAATTCATGTATTGATGGTATTTTTTTTGGTTTATAGACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAGGTAACTTTTTTTTTTTATGTTTCTTATGATTTTTAGCTACAGTTTTGCGATTTTATTAGTAGATTGTGCATACATGGATGCTAAGTTGAGTTTTGATTGTTTTTGTTACTGCTATTTCTATATCTGCATTACCATTTAGTGCAAGTGCTGGGGTTTCTTTTATTGTTGTTATATCTTGGATCCTGCTGGTGTGTGTGTGTGTGTGTGTGGGGGGGGGGGGGGAAGGTACAATCACACGAAATTGATAGTACAATGATGTTCACAGGTTCTATAAAGAAGTAATGATAAGCTTCTCTTAAGTTTTGAAGTTCGAAATCAACATGTTTCATATTTGGGGATGTAATTGATGCAATTGAAACTTTTGTATACATGGGTTGCTGAATTGAACTTTTATTATTTCTATCTTTTTTGGTTGAGTTCAGTTAGTCTTTTCTATCTCTGCATTGCAATTTAGTGCAAATGTTTGGGTTCCTTTTGTTGTTGTTCTCTGATGAATCCTACTGGTGTGTGTGTGATAAAACCGCAATCCGACATGAGATTGGCAGTACAATTCACAATCTTCATAATGAAGAACTGACCAGCTTCTGTTAAGTTTTGATGATCAAAATCAACTTAATTTTATATTTATGGGATGTAATCGATGCAATTGAGTCAACTGACGATGCTATTTGTCATATTGATACAGATGATGTAATAACAATTAGATCAAGCATAATATGTTTGTTTTGTGGCTACAATAAACTCATTGAGGGAAGATGTTCATATTTTGGGGAGGCTCTGATAAATATTTTGGTTGCATAAACTTGATGTGGCTCAAATTGACATGTTTTTAAATGTCATGTTCTATCAGGAGAGTGATTAAATAATACCACTATTATTTTTGTATAATATGGGTCTAAGATGTGCTTAATGAAGCAATGTTGTTGCTAGGGACTGAGGCGTCGTTGTTGTTCTTGTTTTATGTGGAAGCAGGGTAGCTTTAAACCTGGTTGGCTGAGGTGTTTGGTCTATATTGTAGTAGTTTTTTTAGTGGGCTGAGATGAGTGTTTTTGCATTCCATAGTGGAAGTTGACATTCTTTAAGGGGAGATGGTAGATATCCAAGTCATGCTTGATGTCATATCTTAGTGTTATTTTTTGCTTATATGTGAAGTAATGAGTAAGAGATTTCTTGTTCTGTGTCTGTTAGTATTTCATATGCACTATTTTCTTTTTCTCCTTACCACATGTTACACTCATTTCATGTTCATTTTCTTAATTGCTATTTCTCCTGTGGTGTATAAGTTGTTAGAATTCCGACAACTGTTATATTTATAAGGTAGAACTCTAAAGAGATTCAATGTCGGGGAAGAGTTAAAGTGAGAATCAGATGAGAACACTGCTTAGCTGAGAAGTACATGGAAAGAATTGATTAAGAGGATGTCTGGTTATGTTTGATTTTAAAAGAAGTCTTTTCTTTCCTTTATGACCAAGGATTGTGGAACCAACTAGTTGAACTCCTAAAGAAGACACGACTTTGGTGCAATGATGCCAACAATTAGAGAGCATCTCGAGAAAAGCTTTTATGGTCTAAAAAGTGGAGTCATCTGCAATCCTTGTACCTGAGCGGGCCAAAACATTATAGTAACCCAGATGATATTTTTTGTTGTTTCTCAAATGGATAGTATCATTGTTGGACCACATTCTGCTATAATTACAATAGCAAATATTTCTCTTTCTTAAAGTTAAAAACTTATATCATGTACATGCTTTTGTTTGGATGTTCTTGAAGTTGATTCTTCTGGTGAAAAGGCAAAGAGGGTTAAAGATTTAGTAGTAAAAGAAAATGTTTAGCCTTTTAAGGTAGGGAGAAAGGAAGGGGAAGTGTGGAGTCGAAGGATAGAGACAGACAGACAAGGTGATCTGTTTTATCAGATGACCTGTTTATCATCTTTTGCCTCTTTGAGATTACTAGGGGATGGCTTTTAAGCTTACTTTTTGTGAAGCTTCTTAGGATAGTCGATGACTTAGCCAATTTTCTTTGTTCTCTAATCACAAATTTAGAATTGTCCAGATATTTTGGTGGAATCTCATCTAGGCTTCATATGTCTGCCTAAACTTCAGTAGAGGGCACATTTAAGATCCTTGATGCTGTACCTACCATGCTTTTCCTTTCTCTCATATTTTCTATGGTTCAGCTCTCCCTATGGTTTTTTAAATATCCAAGAAATCTTGTAGTTTCCATCTTCGAAACTCAGATGGATAATGAGTCAGTCCTTTTACCAGACTTGGTCCACAACAGGATTCAAACTTGGGACGTGCGCTACACGTCCCTCATTGTGCTACCTTTGCCATTTCTCAAATCGCTGGGGCCTCTCCATTGTCCTTTTTCCCTCAACATATTTTTATTTTTCTCATATTACCTAGCTTGTGGTGAACCTTATTTCTTTTGGTTCTCCTATGTTTGAACATTAGAACATACCTCAGCTCTTTTGCAGTTTACTTGGGTGACTGGACATTCTGCCAGAAACTGTGATGGTACCCATATTCTAAAGTTACAAGTACCTCTCATGGAAAAGTAATGGAGGATAGTCCTAAAATAATTGTGTTTTATTTTGGTTTCAAAATGTTTGAGTTGGCTTGTATAATTCTGATAGTGAAGTGGTCATTGAATGGAGAAAATACGATCGATCACCTTCCACTTCCTCTGTGCTGAAACTAGAAAGAGTCAATTAGTGCCCCTTCCTATTCCTACCTTTCAGCCCCCTCCCCCAAAACCCAACCCAACCCAAAAAAGGGTATGGAATCATAGCAGCATCACTGATAGGTATGTGATAAAGTGTTGAAATAGGTGGCGTGTGTTGCCATACGCCCTTTCCCCTGTGGAGTTTGGTGATGTAATCATCTTTCTTGTAAACAGACCTTCAAGTAATGTCTATTATGTAGAGCGTGTGTTTGCATGTTTTCGGGTTAAATGAAGGACAACGTGATGATTTTATAATTTGTTTTTGTATTAGATATTATATCAGTGATATCCATACATGTTATCTCAAGTGAGTTTCACTCTTCTTTTTTTCTCCTCTTGTCCTTAACTTCACTACCCACCGTACTTGCATAGTAAAATTTTCAAGCGAAGAGGCGTCAGTTGAGCCCTCCCTTCTCTACCTTTAGCTCTACAGACATTGTTATTTCTTCACGGTGTTGAATATAGTTGTTATTCAGTCTTTGCATCAAATGTTGGTTTCTCTTGTTGTTTTCGCGTGAATGAAAAGAGGAACATTTGCTGCTCCTCTATGTAATATTTCCCTTTTATGCATTTGGTAGCTCATAACTGTGGACTTCTGTAGCTCTGTTATATAGTTCCTTTTTAGACATTTGGTATATAATGTATCCTGTATCCCATGCTTGATGGGAGTATGTCAGAGAATTTTCCATATTGATTGCCTGTTCTAATGGTTTGTATTTTTAATTCCTTGCTAGTGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCGGCATGTACCTTGTTAGACATGCTTCTATCTTTGCTTGTATTGATTCCTAAGAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTT</genome_strand>
        <mrna_strand>CACTGAATTTAGCTCCGGCGTCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGATATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGGGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGATGTTTCGCGCCGATCCCGAGAAA......................................................................................ACTCGCTATGTGAGGAAATACAGACATTCTGATGGTAAATTGGGTCTCAAGGTCACTGATGATAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAGGTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGGCTCGGGGTCCAGACG..............................................................................................................................................................................................................................CTGATATATCTGAAGGGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597099" ref_strand="+" ref_description="SGN-E597099 [40596]">
      <seq>ctcttttcacactgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaacgcatcttcttgaaagtggcaactggagctcctcagaaatgtagatgagctatcgatatgtcacctcgtgtgtgcaatggttagtaaattgtgtcaatagagaattcttttgcaacataattgggtgaggttgctttgtatctacaagttagtccttgttaatttcgtgccatggggttgtccatcattcccgagttttgaaggttgcggttttcccaaagggttggctccatatagatttctcggtcatcgaaaaaaacaaataccataggttcctaaagatacaagacctatggaaaaagtatgaagagaaactagcatgctgtaatttttgtacagtactatatggttttattattgtgggaataatttttcataacttatttttaagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34018" stop="32869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33718" g_stop="33610" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33530" g_stop="33167" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="472" r_length="363" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E597099" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33718" e_stop="33610"/>
          <exon e_start="33530" e_stop="33167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAAC-AATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGG</genome_strand>
        <mrna_strand>CTCTTTTCACACTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAACGCATCTTCTTGAAAGTGGCAACTGGAGCTCCT...............................................................................CAGAAATGTAGATGAGCTATCGATATGTCACCTCGTGTGTGCAATGGTTAGTAAATTGTGTCAATAGAGAATTCTTTTGCAACATAATTGGGTGAGGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGTGCCATGGGGTTGTCCATCATTCCCGAGTTTTGAAGGTTGCGGTTTTCCCAAAGGGTTGGCTCCATATAGATTTCTCGGTCATCGAAAAAAACAAATACCATAGGTTCCTAAAGATACAAGACCTATGGAAAAAGTATGAAGAGAAACTAGCATGCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGAATAATTTTTCATAAC--TTATTTTTAAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242969" ref_strand="+" ref_description="SGN-E242969 [cLED-31-F6]">
      <seq>tgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatctgcttgaaagtggcaactggagctcttcagaaatgcanctnacctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatctacaagttagtccttgttaatttcgcgctatggagttatccatcattcccgagttctgaaggttgcgtttttcccaaagggttggttccagatagatttctaggnnatcgaaaaaaacaataccataggttcctaaagataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34030" stop="32979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33730" g_stop="33610" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33530" g_stop="33279" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="373" r_length="252" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E242969" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33730" e_stop="33610"/>
          <exon e_start="33530" e_stop="33279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACA</genome_strand>
        <mrna_strand>TGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT...............................................................................CAGAAATGCANCTNACCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTAGGNNATCGAAAAAAACAATACCATAGGTTCCTAAAGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356871" ref_strand="+" ref_description="SGN-E356871 [cTOS-22-C10]">
      <seq>gtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatctgcttgaaagtggcaactggagctcttaaatgcagctgagctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatctacaagttagtccttgttaatttcgcgctatggaggtatccatcattcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34422" stop="33070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34122" g_stop="34067" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33875" g_stop="33610" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="322" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33609" i_stop="33528" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33527" g_stop="33370" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="480" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E356871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34122" e_stop="34067"/>
          <exon e_start="33875" e_stop="33610"/>
          <exon e_start="33527" e_stop="33370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGA</genome_strand>
        <mrna_strand>GTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT..................................................................................AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGGTATCCATCATTCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339506" ref_strand="+" ref_description="SGN-E339506 [cTOE-16-I13]">
      <seq>tgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcaggttagaaatccactatcctcttctaaaccggcatgtatattcctaagctatctggcttccccctttccgaaggggaaccttggcgtaactgttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatctgcttgaaagtggcaactggagctcttaaatgcagctgagctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatctacaagttagtccttgttaatttcgcgctatggagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34485" stop="33084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34405" g_stop="34402" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34180" g_stop="33976" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="209" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33975" i_stop="33876" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33875" g_stop="33610" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="475" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33609" i_stop="33528" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33527" g_stop="33384" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="619" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E339506" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34405" e_stop="34402"/>
          <exon e_start="34180" e_stop="33976"/>
          <exon e_start="33875" e_stop="33610"/>
          <exon e_start="33527" e_stop="33384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTA</genome_strand>
        <mrna_strand>TGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTG....................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT..................................................................................AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316606" ref_strand="+" ref_description="SGN-E316606 [cTOA-25-L8]">
      <seq>tgaaagagccacgaaaattgtgctttagtgttagtactccaaagagggatctgtacaatcacatttttcattctatcccatctactctgtaattgtttatatgtatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatctgcttgaaagtggcaactggagctcttcagaaatgcagctgagctatcgatatgtcacctcgtgtattcaatgggtagtaaattgtgtcaatagtgaattcttttgcacataattggatgaaagtgctttgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42666" stop="33121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42366" g_stop="42265" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42264" i_stop="35440" i_length="6825">
            <donor d_prob="0.352" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35439" g_stop="35413" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="129" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="282" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="396" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33875" g_stop="33610" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="662" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33530" g_stop="33421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="771" r_length="109" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E316606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42366" e_stop="42265"/>
          <exon e_start="35439" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33610"/>
          <exon e_start="33530" e_stop="33421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATTGTAAGTGCATTCACATTGATTCTTTTGTTTCCCACCTCTGGACTGGTTTCACTCCAAGGTGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCACTTTCTCTATTTATTCCCCACATTGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTTTTAACTTTTGGGGGTGGGTAGGCCCAGGGGGCATATCTTTACAAAAATTAATGGTGGAAACTAGAATAGCGGAACGAATTTTGTTGGAGGGATTTTTCGCTAAACTGAAAAAAACAAGGGGGGTGAGACTACCGGTTGGACTGGTAAAATCTAATTTCTAACCAGAAAGCAAGAGCCGATCCCATCTGGGGAGCTTCTTCTGATAATCCCCAAAAAAAACCCTGGGGTCCTGCCCCGTTCCCTTTTAGAAAAAGATTTCCCCAAAAAAGGCTAGGGTTCTAATTCTGGTCCCAGAAATATTTGCTTATCAAAAAAGATATTGGGAGGGTTTAGGATCAAGGCCCTACCCAAAGGTCATTATACAGATTCTACCTCATACACATCAGTTTACTTTACCCAGAGGGGAACTTTGGGAAAATACCAAAAGGGATTGGGTCCCGATTTGATTTAATTGCCTTAAGGGAGACTGGAAAATCCTGAATTTTCTTAGAAAGATAACCTATTTCTCTGATAGGGGTTCCTAGAAATCCGGACTTATTTGTGAGAGCTTAACTCCGGGGACACACAACCCATGAAGTGGGCCATGCGGGTAAGGGGGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGGAAAGGACGGGCTCTTTATCCTGATCCTAAAGCTTATAGAAAATTATTCGGAGAAAGGAAGGAGAATGGTACATCCTCCGGCTTTTAATTGGGATAGGTAAATTTTGCAGGTCCAGGACTTAAATTCCCTTGATGGGCTCCGCCCGCTATTTCACAGGAAGGGAGATCCCCGACCTTCTTGGCTTGGGTTTGATGAAGAAAAGTCGCAAATGGGAAAAAGTTTCCCCCCAAACCTTGGCTATTACTCCCTCCCGGAAAATTGGGGGCCGGGAAAAAACTTATCTCCAATAAACAAACCGGGGCCTCTTAAGGGCCTTTCTAATATTATTAAATTTAAAGGGGAATGCTTTTTTTGGAGCCAACCCTGCCTAAATAAAAAAAAAAGGGCCCCCTTTGACGGTTAAACCATGTGGGAAACCTTGGGGGATTTTGTGCCAACCGGTCCAAGGGGAAACCTCCTTGGAATCCGGGGGGTAACCCACCTTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTCCTATGAGCAAAATATATTTTCTGAACACGGGCGAAAAAGACCTCCAATATGGTTGTTTTTATAAGGAAAAGTTTAAAGAAACCACGAGCGCCCGGGTTTTCTTTTAAACGCCTCTCACAAAGTTTTGCCTGGGCTCGTTTCCCCGGCCATTTTTAAGTAAAGAACTTGTCGGTAAATTCCCGGGGTATTTTCCACCTCAGGGAAAAGAGGTTCCCCATTTCCCTTTCCAAAAAAGGAAAAAATTTCCCTTTTTTTTTCTTAAATTAAAGGTGGGCGATGATATTCCGGCCAGGAATAGAATTTTAAATTAAAATGGTATGGGGAATATTGGGGGATTTTATTGGGTATTTGGTGGGCTTCTTCCCAGTTCAGAAATTTTTTGGTTACCCCTTATTTTTGGTCCCTAAGGCTTCACCACCAAAAGGGAAACAGAGAAAGGAATTCATGCCTTAGATTTTCGCGGCTTCGGTAGTATCACTCTCTTTTGAAGGCATTTTGTAGCTGTTAGTTCCCTTGGGATTTCCCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAAAAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCCCAACAATAGGTTAGCAAATCTTTTTGGCTGTTTTTGTGAGGGTGATGAGAGGTTCCTAGTTCCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATTTTTTTCATTGTAAGGGCATTCCCATTGATTCTTTTGTTTCCCCCCTCTGGACTGGTTTCCCTCCAAGGGGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCCCTTTCTCTATTTATTCCCCACATGGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGTGTTGTAGCTTTTGGGGTTGGTTAGGCCAAGGTGTCATATCTTTACAAATATTAATGTTGAATACTAGAATAGCGGAACGAATTTTGTTGTAGGGATTTTTCGCTAAACTGATAAATACAAGCTGGATGAGACTACAGTTTGATCTGTTAAATTCTAATTTCTAACAAGAAAGCAAGAGCAGATCCAATCTGCGAGCTTCTTCTGATAATCCCCAAATAAAACCTTGGGTTCATGCACTGTTCCATTTTAGAAAATGATTTCCCAAACAAAGGCTAGGTTTCTAATTCTGTTCTCAGATATATTTGCTTATCAGAAATGATATTGTGAGTGTTTAGTATCAAGTCCATACACAAAGTTCATTATACAGATTCTACATCATACACATCAGTTTACTTTACCTAGAGAGCAACTATGGGAAAATACAAAATGAGATTGGATCCGTATTTGATTTAATTGCTTTAAGGAAGACTGAAAAATCATGAATTTACTTAGAAAGATAACATATTTCTCTGATAGTGATTCATAGAATTCAGTACTTATTTGTGAGAGCTTAACTCAGGGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAAGTAAGTAGATTGTTACATCTTCAGTCTTTTAATTGGTATAGTTAAATTTTGCAGTTCAAGTACTTAAATTCCTTTGATGGTCTCTGCCGTCTATTTCACAGGATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAGGTAAGAACTATCCTCTAATAAACAAACAGGAGCATCTTAAGGCACTTTCTAATATTATAATATTAAAGGGGAATGCTTTTTATGAGCTAATCTGACTTAATAAAAAGAAAGGAGCCACTTTGACTGTTATAGCATTGGTGTAACCTTGTAGGATTTTGTTGCAATCTGTTCAATGTGTAGACTTCATTGAATTCATGGTGTTAACTACATTTATATTTCTTGTATTATAGAAATTGTTTTAGTTCGCTCAGTTCTTTTGAATTTTTTTGCAGGTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCATGTAGGTTTTCCTGATAAATTTATTTCCTTTTTTAGTTAAATGCTCCTTACAACCATATAGCTCACACTTTATTGTGACTAGAAGACATGACAATGAGTGTCCTACATTCTTTCTAGTTTCTCTTCGATATCTTTCTGTGGCTACATAAATGGATTATCAATTCTTTTCAATCCAACTCAAGTTTTGAGTTTGAAGGTATCATATGTTACATACTTAATGACAACTGTAATCGCAAGGTGTCATTTGCATTTTGGATGATCTCTGCATGATCCTTCTTATCACCAAAAATTGATAATTCCTTGTTCTGGCTCAAGGGTACTGACTTCTTGTCCTTGGAATAGTCTTAATAGTTTGACATTGGCTTTGACACGTAGCCTGTCCTGTTAAATACAGACAACATTAGCAATACATTGCGAAAATAAACAGGAAATGCTACCAACTTTTGGGCTCTCTGAGTATGTTCCTACAAGAAAAATTATTCAATCGCTGTCTAAAAGACTTGCATCTAATTCTTTGTTCTAATATCCTAGTACCACCCCTCCTCTTCTTCAGTGATCTAGCTTGTTGAACTTAGTACTGATTCTTAGAATCTTACTGGAACAATAAGAATCATTGTTCAGAGAATTAGTGGAGTCATATTTTTAGTTGTTATGTCTTCGAGAAAATGAAAGATGAGAAGCTAAACATAAATCTACAAAAAGCTTGCCAACATTGTTAAAGTCAGACATCAAATTTAAAGAAGGGTTGGGGTGGCTTCCATTTTCAATTAAGATGCTTGCTGATTACTGAAAGCATTATGTATCTACTTATGTCAGGCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCT</genome_strand>
        <mrna_strand>TGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT...............................................................................CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGGTAGTAAATTGTGTCAATAGTGAATTCTTTTGC-ACATAATTGGATGAAAGTGCTTTGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237881" ref_strand="+" ref_description="SGN-E237881 [cLED-18-J4]">
      <seq>ggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35823" stop="33343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35523" g_stop="35413" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="264" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="378" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33875" g_stop="33643" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="611" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E237881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35523" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAA</genome_strand>
        <mrna_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243790" ref_strand="+" ref_description="SGN-E243790 [cLED-35-L21]">
      <seq>ggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35823" stop="33375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35523" g_stop="35413" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="264" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="378" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33875" g_stop="33675" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="579" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E243790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35523" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTT</genome_strand>
        <mrna_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464638" ref_strand="+" ref_description="SGN-E464638 [cPRO-18-L1]">
      <seq>ctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcatgtattaatgggtatatcatctgatggagaaactatgcctctatctccacttggtgaagcttgtttgaaaacggacttgactgctatccatgagatcttagaagcacttggatacaaagatgatgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacattgaactcaaagaaaaagggtgatgctgctttcaaaaacaaagattttagtgctgccattgaatgctatacgcagtttattgatgttggaacaatggcctcaccaactgtgttcattcgtcgtagtctgtcttatctcatgagtgatatgccacaagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaagctgcttctcttttcacactgggaagggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35777" stop="33394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35477" g_stop="35413" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="218" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="332" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33875" g_stop="33694" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="514" r_length="182" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E464638" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35477" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAA</genome_strand>
        <mrna_strand>CTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCATGTATTAATGGGTATATCATCTGATGGAGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGACTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGATGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACATTGAACTCAAAGAAAAAGGGTGATGCTGCTTTCAAAAACAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTTATTGATGTTGGAACAATGGCCTCACCAACTGTGTTCATTCGTCGTAGTCTGTCTTATCTCATGAGTGATATGCCACAAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACACTGGGAAGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392645" ref_strand="+" ref_description="SGN-E392645 [TUS-36-D13]">
      <seq>cggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgataccgtacaagcacaaagtgatatctcctgtttggtatattgcgtcatatctggcatctgcttctctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35824" stop="33427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35524" g_stop="35413" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="265" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="379" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33875" g_stop="33712" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="544" r_length="165" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E392645" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35524" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCAC-AAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTT</genome_strand>
        <mrna_strand>CGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACCGTACAAGCACAAAGTGATATCTCCTGTTTGGTATATTGCGTCATATCTGGCATCTGCTTCTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373201" ref_strand="-" ref_description="SGN-E373201 [TUS-32-O5](-)">
      <seq>cagcacaaacttggcatttactcctcctgaatatttgaggacaggtagaatcaccccagagagtgtgatatttagctttgtgacacttttgcttgaccttctgagtggaaagcacatccctcctagtcatgcactggatctgataaaagaccggaatcttgagatgctaactgattcttgcttggagggtcaattttctactgatgacggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcagttcattgacgttggaaccatggcctcaccaactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37118" stop="33425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36818" g_stop="36775" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36502" g_stop="36417" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="130" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35601" g_stop="35413" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="319" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="472" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="586" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33875" g_stop="33725" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="737" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E373201" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373201" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36818" e_stop="36775"/>
          <exon e_start="36502" e_stop="36417"/>
          <exon e_start="35601" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAGGTAAGAACTATCCTCTAATAAACAAACAGGAGCATCTTAAGGCACTTTCTAATATTATAATATTAAAGGGGAATGCTTTTTATGAGCTAATCTGACTTAATAAAAAGAAAGGAGCCACTTTGACTGTTATAGCATTGGTGTAACCTTGTAGGATTTTGTTGCAATCTGTTCAATGTGTAGACTTCATTGAATTCATGGTGTTAACTACATTTATATTTCTTGTATTATAGAAATTGTTTTAGTTCGCTCAGTTCTTTTGAATTTTTTTGCAGGTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCATGTAGGTTTTCCTGATAAATTTATTTCCTTTTTTAGTTAAATGCTCCTTACAACCATATAGCTCACACTTTATTGTGACTAGAAGACATGACAATGAGTGTCCTACATTCTTTCTAGTTTCTCTTCGATATCTTTCTGTGGCTACATAAATGGATTATCAATTCTTTTCAATCCAACTCAAGTTTTGAGTTTGAAGGTATCATATGTTACATACTTAATGACAACTGTAATCGCAAGGTGTCATTTGCATTTTGGATGATCTCTGCATGATCCTTCTTATCACCAAAAATTGATAATTCCTTGTTCTGGCTCAAGGGTACTGACTTCTTGTCCTTGGAATAGTCTTAATAGTTTGACATTGGCTTTGACACGTAGCCTGTCCTGTTAAATACAGACAACATTAGCAATACATTGCGAAAATAAACAGGAAATGCTACCAACTTTTGGGCTCTCTGAGTATGTTCCTACAAGAAAAATTATTCAATCGCTGTCTAAAAGACTTGCATCTAATTCTTTGTTCTAATATCCTAGTACCACCCCTCCTCTTCTTCAGTGATCTAGCTTGTTGAACTTAGTACTGATTCTTAGAATCTTACTGGAACAATAAGAATCATTGTTCAGAGAATTAGTGGAGTCATATTTTTAGTTGTTATGTCTTCGAGAAAATGAAAGATGAGAAGCTAAACATAAATCTACAAAAAGCTTGCCAACATTGTTAAAGTCAGACATCAAATTTAAAGAAGGGTTGGGGTGGCTTCCATTTTCAATTAAGATGCTTGCTGATTACTGAAAGCATTATGTATCTACTTATGTCAGGCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAG</genome_strand>
        <mrna_strand>CAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG................................................................................................................................................................................................................................................................................GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGTGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469503" ref_strand="+" ref_description="SGN-E469503 [cSTB-12-A21]">
      <seq>ctgaattggtacggattgcttcgagatgtctccaatatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcatgtattaatgggtatatcatctgatggagaaactatgcctctatctccacttggtgaagcttgtttgaaaacggacttgactgctatccatgagatcttagaagcacttggatacaaagatgatgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacattgaactcaaagaaaaagggtgatgctgctttcaaaaacaaagattttagtgctgccattgaatgctatacgcagtttattgatgttggaacaatggcctcaccaactgtgttcattcgtcgtagtctgtcttatctcatgagtgatatgccacaagaagctctcaatgatacagtacaagcacaagtgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35819" stop="33458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35519" g_stop="35413" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="260" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34067" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="374" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33875" g_stop="33758" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="492" r_length="118" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E469503" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35519" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34067"/>
          <exon e_start="33875" e_stop="33758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATAT</genome_strand>
        <mrna_strand>CTGAATTGGTACGGATTGCTTCGAGATGTCTCCAATATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCATGTATTAATGGGTATATCATCTGATGGAGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGACTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGATGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACATTGAACTCAAAGAAAAAGGGTGATGCTGCTTTCAAAAACAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG...............................................................................................................................................................................................TTTATTGATGTTGGAACAATGGCCTCACCAACTGTGTTCATTCGTCGTAGTCTGTCTTATCTCATGAGTGATATGCCACAAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553448" ref_strand="+" ref_description="SGN-E553448 [cTSC-1-C18]">
      <seq>gaagaacagtcgagatggaaaaagttacagcacaaacttggcatttactcctcctgaatatttgaggacaggtagaatcaccccagagagtgtgatatttagctttgggacacttttgcttgaccttctgagtggaaagcacatccctcctagtcatgcactggatctgataaaagaccggaatcttgagatgctaactgattcttgcttggagggtcaattttctactgatgacggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgatgttgctttcaaaaataaagattttagtgctgccattgaatgctatacgcaggttagaaatccactatcctcttctaaaccggcatgtatattcctaagctatctggcttccccctttccgaaggggaaccttggcgtaactggtaacctgtcatgactgcttatgttacacactactgtgcaatgtggatctattctattgttgaactatttcgttatctattactttgcttgctcttgcagttcattgacgttggaaccatggcctcacccactgtgtttgttcgtcgttgtctgtcttatctcatgaatgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37145" stop="33501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36845" g_stop="36775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36502" g_stop="36417" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="157" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35601" g_stop="35413" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="346" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="498" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34180" g_stop="33801" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="878" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E553448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36845" e_stop="36775"/>
          <exon e_start="36502" e_stop="36417"/>
          <exon e_start="35601" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="33801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAGGTAAGAACTATCCTCTAATAAACAAACAGGAGCATCTTAAGGCACTTTCTAATATTATAATATTAAAGGGGAATGCTTTTTATGAGCTAATCTGACTTAATAAAAAGAAAGGAGCCACTTTGACTGTTATAGCATTGGTGTAACCTTGTAGGATTTTGTTGCAATCTGTTCAATGTGTAGACTTCATTGAATTCATGGTGTTAACTACATTTATATTTCTTGTATTATAGAAATTGTTTTAGTTCGCTCAGTTCTTTTGAATTTTTTTGCAGGTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCATGTAGGTTTTCCTGATAAATTTATTTCCTTTTTTAGTTAAATGCTCCTTACAACCATATAGCTCACACTTTATTGTGACTAGAAGACATGACAATGAGTGTCCTACATTCTTTCTAGTTTCTCTTCGATATCTTTCTGTGGCTACATAAATGGATTATCAATTCTTTTCAATCCAACTCAAGTTTTGAGTTTGAAGGTATCATATGTTACATACTTAATGACAACTGTAATCGCAAGGTGTCATTTGCATTTTGGATGATCTCTGCATGATCCTTCTTATCACCAAAAATTGATAATTCCTTGTTCTGGCTCAAGGGTACTGACTTCTTGTCCTTGGAATAGTCTTAATAGTTTGACATTGGCTTTGACACGTAGCCTGTCCTGTTAAATACAGACAACATTAGCAATACATTGCGAAAATAAACAGGAAATGCTACCAACTTTTGGGCTCTCTGAGTATGTTCCTACAAGAAAAATTATTCAATCGCTGTCTAAAAGACTTGCATCTAATTCTTTGTTCTAATATCCTAGTACCACCCCTCCTCTTCTTCAGTGATCTAGCTTGTTGAACTTAGTACTGATTCTTAGAATCTTACTGGAACAATAAGAATCATTGTTCAGAGAATTAGTGGAGTCATATTTTTAGTTGTTATGTCTTCGAGAAAATGAAAGATGAGAAGCTAAACATAAATCTACAAAAAGCTTGCCAACATTGTTAAAGTCAGACATCAAATTTAAAGAAGGGTTGGGGTGGCTTCCATTTTCAATTAAGATGCTTGCTGATTACTGAAAGCATTATGTATCTACTTATGTCAGGCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATG</genome_strand>
        <mrna_strand>GAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG................................................................................................................................................................................................................................................................................GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGAC-GGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCCACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228236" ref_strand="+" ref_description="SGN-E228236 [cLED-2-J11]">
      <seq>ggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatttcagatgtggacagatcagatgctggaaacgttgaactcaaagaaaaagggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35823" stop="33818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35523" g_stop="35413" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="264" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34118" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="327" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E228236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35523" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGAT</genome_strand>
        <mrna_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241607" ref_strand="+" ref_description="SGN-E241607 [cLED-36-M7]">
      <seq>ggaactgaattggtacggattgcttcgagatgtctccagtatgagcctcgtgagcggccgaatctgaagtcattagtttctgcattatatcctcttcaaaaagaagctgaggttccctctcttgtattaatgggtatatcatctgatggcgaaactatgcctctatctccacttggtgaagcttgtttgaaaacggatttgactgctatccatgagatcttagaagcacttggatacaaagatgacgggggagcagctactgagctttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35823" stop="34094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35523" g_stop="35413" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34554" g_stop="34402" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="264" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34180" g_stop="34173" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="272" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E241607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35523" e_stop="35413"/>
          <exon e_start="34554" e_stop="34402"/>
          <exon e_start="34180" e_stop="34173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAGGTTTGTGCTTTTTATCTATGGTCTAATATCAATTATTAGCTACAAGATTTTTATAGATCTCGAATTTCTATACATTATGTTGGCCTGAACTGAATTTAAATGGGAAACATATATAGTCAATGGGGATGACAAGTGGAGAACTTTATTCTTTCTCATACCATTTACAAGTGGTATACCAAAAAGAGGAGAAAAACCTAGAGAGAATGGTTCTTTCTGAAAGACACCCAATCCTCTATAGTATGCACACATGAGCTATAGGGTGCACCAGTAGAAAATAAGAGATCGAACACTAGTGAATACTACTCAAATGAGCATAAAGCTCATCTCTACCCATTCAAAAGATTACTTATTTCTCTATTTCCAAATGACCCACATTAAAGCAAGTAACATTCTAAGCCTTGTGGCTTCTTCTCCTAGCTCCACCCTTCCAGCTGAACATCAACTCCATCATGGATTTTGGCATTACCCAAGAAATGCCGAACCATAACATATCCTTCCATAACCTCGTGGCTAATTTGTAATGTAACAAAATATGGTCCACATCCTCACCCGTCTCCGTACAACGGAATCACCAGCTCAAGCAGACAACCTCTCATTTCCTAATATTTTTATCTTTTTTGAAACTTGTTAGTTTGCCTCTCATTTCCTAAAACTCTCCACCTTTAAAATCACCCCTCAAGTAGCTAGCCACATGAAGAAGCATACCTTCTATCAGAAATCATCTATTACTTGACATAATTTAGCTTATAGTAATATATCGGCACCATTAACTTGATTTTGCTTATAGTAAAATATCAGAAATCATCTATTACATGACATAATTTAGCTGGTTTGAAGTTTTAGTAACTTGTTTTTCAGGTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAGGTTTGCATATCAATAATTTTTCTTTCTGGTCTTGTATATGCATGTTTTTGAACATCTATAACCTATTCCATGTGAACACTTATTGTCCGGTTCTGCGTCATGCATGTGATTCATGGGTTTCAACTTATTGCTCATTCGTATTGTAATCATATCCAGTTTGTCTTTGAAACCCAATTTTATAAGAATCTCATGATGATCACACTTCTTTTTCTTGCTTGCAGCTTTCATT</genome_strand>
        <mrna_strand>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG.............................................................................................................................................................................................................................CTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454843" ref_strand="+" ref_description="SGN-E454843 [cSTS-24-F13]">
      <seq>gagtggccccattcatgaggttcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctgaggattgctacatctgcatttgctgtagagaatatagtttctgaacatggtgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttttagaagaagcaagggctgttggtctactccgcaacaataggttagcaaatcttcttggctgttgttgtgagggtgatgagaggttgctagttgcagaattcatgcccaaagagacgcttgcaaaacatctttttcattgggacacacaaccaatgaagtgggcaatgcggttaagggtggcattgtatattgcacaggctcttgaatattgtacaggcaaaggacgtgctctttatcatgatcttaatgcttatagaatattattcggagaagatggtgatccccgactctcttgctttggtttgatgaagaacagtcgagatggaaaaagttacagcacaaacttggcatttactcctcctgaatatttgaggacaggtagaatcaccccagagagtgtgatatttagctttgggacacttttgattgaccttctcagtggaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41149" stop="36133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40958" g_stop="40927" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40843" g_stop="40626" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="250" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40174" g_stop="40039" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="386" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37115" g_stop="36982" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="520" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36880" g_stop="36775" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="626" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36502" g_stop="36433" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="696" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E454843" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40958" e_stop="40927"/>
          <exon e_start="40843" e_stop="40626"/>
          <exon e_start="40174" e_stop="40039"/>
          <exon e_start="37115" e_stop="36982"/>
          <exon e_start="36880" e_stop="36775"/>
          <exon e_start="36502" e_stop="36433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATTGTAAGTGCATTCACATTGATTCTTTTGTTTCCCACCTCTGGACTGGTTTCACTCCAAGGTGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCACTTTCTCTATTTATTCCCCACATTGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTTTTAACTTTTGGGGGTGGGTAGGCCCAGGGGGCATATCTTTACAAAAATTAATGGTGGAAACTAGAATAGCGGAACGAATTTTGTTGGAGGGATTTTTCGCTAAACTGAAAAAAACAAGGGGGGTGAGACTACCGGTTGGACTGGTAAAATCTAATTTCTAACCAGAAAGCAAGAGCCGATCCCATCTGGGGAGCTTCTTCTGATAATCCCCAAAAAAAACCCTGGGGTCCTGCCCCGTTCCCTTTTAGAAAAAGATTTCCCCAAAAAAGGCTAGGGTTCTAATTCTGGTCCCAGAAATATTTGCTTATCAAAAAAGATATTGGGAGGGTTTAGGATCAAGGCCCTACCCAAAGGTCATTATACAGATTCTACCTCATACACATCAGTTTACTTTACCCAGAGGGGAACTTTGGGAAAATACCAAAAGGGATTGGGTCCCGATTTGATTTAATTGCCTTAAGGGAGACTGGAAAATCCTGAATTTTCTTAGAAAGATAACCTATTTCTCTGATAGGGGTTCCTAGAAATCCGGACTTATTTGTGAGAGCTTAACTCCGGGGACACACAACCCATGAAGTGGGCCATGCGGGTAAGGGGGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGGAAAGGACGGGCTCTTTATCCTGATCCTAAAGCTTATAGAAAATTATTCGGAGAAAGGAAGGAGAATGGTACATCCTCCGGCTTTTAATTGGGATAGGTAAATTTTGCAGGTCCAGGACTTAAATTCCCTTGATGGGCTCCGCCCGCTATTTCACAGGAAGGGAGATCCCCGACCTTCTTGGCTTGGGTTTGATGAAGAAAAGTCGCAAATGGGAAAAAGTTTCCCCCCAAACCTTGGCTATTACTCCCTCCCGGAAAATTGGGGGCCGGGAAAAAACTTATCTCCAATAAACAAACCGGGGCCTCTTAAGGGCCTTTCTAATATTATTAAATTTAAAGGGGAATGCTTTTTTTGGAGCCAACCCTGCCTAAATAAAAAAAAAAGGGCCCCCTTTGACGGTTAAACCATGTGGGAAACCTTGGGGGATTTTGTGCCAACCGGTCCAAGGGGAAACCTCCTTGGAATCCGGGGGGTAACCCACCTTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTCCTATGAGCAAAATATATTTTCTGAACACGGGCGAAAAAGACCTCCAATATGGTTGTTTTTATAAGGAAAAGTTTAAAGAAACCACGAGCGCCCGGGTTTTCTTTTAAACGCCTCTCACAAAGTTTTGCCTGGGCTCGTTTCCCCGGCCATTTTTAAGTAAAGAACTTGTCGGTAAATTCCCGGGGTATTTTCCACCTCAGGGAAAAGAGGTTCCCCATTTCCCTTTCCAAAAAAGGAAAAAATTTCCCTTTTTTTTTCTTAAATTAAAGGTGGGCGATGATATTCCGGCCAGGAATAGAATTTTAAATTAAAATGGTATGGGGAATATTGGGGGATTTTATTGGGTATTTGGTGGGCTTCTTCCCAGTTCAGAAATTTTTTGGTTACCCCTTATTTTTGGTCCCTAAGGCTTCACCACCAAAAGGGAAACAGAGAAAGGAATTCATGCCTTAGATTTTCGCGGCTTCGGTAGTATCACTCTCTTTTGAAGGCATTTTGTAGCTGTTAGTTCCCTTGGGATTTCCCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAAAAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCCCAACAATAGGTTAGCAAATCTTTTTGGCTGTTTTTGTGAGGGTGATGAGAGGTTCCTAGTTCCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATTTTTTTCATTGTAAGGGCATTCCCATTGATTCTTTTGTTTCCCCCCTCTGGACTGGTTTCCCTCCAAGGGGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCCCTTTCTCTATTTATTCCCCACATGGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGTGTTGTAGCTTTTGGGGTTGGTTAGGCCAAGGTGTCATATCTTTACAAATATTAATGTTGAATACTAGAATAGCGGAACGAATTTTGTTGTAGGGATTTTTCGCTAAACTGATAAATACAAGCTGGATGAGACTACAGTTTGATCTGTTAAATTCTAATTTCTAACAAGAAAGCAAGAGCAGATCCAATCTGCGAGCTTCTTCTGATAATCCCCAAATAAAACCTTGGGTTCATGCACTGTTCCATTTTAGAAAATGATTTCCCAAACAAAGGCTAGGTTTCTAATTCTGTTCTCAGATATATTTGCTTATCAGAAATGATATTGTGAGTGTTTAGTATCAAGTCCATACACAAAGTTCATTATACAGATTCTACATCATACACATCAGTTTACTTTACCTAGAGAGCAACTATGGGAAAATACAAAATGAGATTGGATCCGTATTTGATTTAATTGCTTTAAGGAAGACTGAAAAATCATGAATTTACTTAGAAAGATAACATATTTCTCTGATAGTGATTCATAGAATTCAGTACTTATTTGTGAGAGCTTAACTCAGGGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAAGTAAGTAGATTGTTACATCTTCAGTCTTTTAATTGGTATAGTTAAATTTTGCAGTTCAAGTACTTAAATTCCTTTGATGGTCTCTGCCGTCTATTTCACAGGATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAGGTAAGAACTATCCTCTAATAAACAAACAGGAGCATCTTAAGGCACTTTCTAATATTATAATATTAAAGGGGAATGCTTTTTATGAGCTAATCTGACTTAATAAAAAGAAAGGAGCCACTTTGACTGTTATAGCATTGGTGTAACCTTGTAGGATTTTGTTGCAATCTGTTCAATGTGTAGACTTCATTGAATTCATGGTGTTAACTACATTTATATTTCTTGTATTATAGAAATTGTTTTAGTTCGCTCAGTTCTTTTGAATTTTTTTGCAGGTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCA</genome_strand>
        <mrna_strand>GAGTGGCCCCATTCATGAGGTTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTGAGGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGTGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAAGGGCTGTTGGTCTACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCATTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA.....................................................................................................GATGGTGATCCCCGACTCTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG................................................................................................................................................................................................................................................................................GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGATTGACCTTCTCAGTGGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209680" ref_strand="+" ref_description="SGN-E209680 [cLEC-54-J22]">
      <seq>tcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatggcgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttttagaagaagcaagggctgttggtcaactccgcaacaataggttagcaaatcttcttggctgttgttgtgagggtgatgagaggttgctagttgcagaattcatgcccaaagagacgcttgcaaaacatctttttcattgggacacacaaccaatgaagagggcaatgcggttaagggtgggcgttgtatattgcacaggctctagaatatagtacaggcaaaggacgtgctctttatcatgatcttaatggttatagaatattattcggagaagatggagatccccgactttcttgctttggtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41083" stop="36546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40783" g_stop="40626" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40174" g_stop="40039" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="294" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37115" g_stop="36982" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="429" r_length="135" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36880" g_stop="36846" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="464" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E209680" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40783" e_stop="40626"/>
          <exon e_start="40174" e_stop="40039"/>
          <exon e_start="37115" e_stop="36982"/>
          <exon e_start="36880" e_stop="36846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATTGTAAGTGCATTCACATTGATTCTTTTGTTTCCCACCTCTGGACTGGTTTCACTCCAAGGTGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCACTTTCTCTATTTATTCCCCACATTGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTTTTAACTTTTGGGGGTGGGTAGGCCCAGGGGGCATATCTTTACAAAAATTAATGGTGGAAACTAGAATAGCGGAACGAATTTTGTTGGAGGGATTTTTCGCTAAACTGAAAAAAACAAGGGGGGTGAGACTACCGGTTGGACTGGTAAAATCTAATTTCTAACCAGAAAGCAAGAGCCGATCCCATCTGGGGAGCTTCTTCTGATAATCCCCAAAAAAAACCCTGGGGTCCTGCCCCGTTCCCTTTTAGAAAAAGATTTCCCCAAAAAAGGCTAGGGTTCTAATTCTGGTCCCAGAAATATTTGCTTATCAAAAAAGATATTGGGAGGGTTTAGGATCAAGGCCCTACCCAAAGGTCATTATACAGATTCTACCTCATACACATCAGTTTACTTTACCCAGAGGGGAACTTTGGGAAAATACCAAAAGGGATTGGGTCCCGATTTGATTTAATTGCCTTAAGGGAGACTGGAAAATCCTGAATTTTCTTAGAAAGATAACCTATTTCTCTGATAGGGGTTCCTAGAAATCCGGACTTATTTGTGAGAGCTTAACTCCGGGGACACACAACCCATGAAGTGGGCCATGCGGGTAAGGGGGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGGAAAGGACGGGCTCTTTATCCTGATCCTAAAGCTTATAGAAAATTATTCGGAGAAAGGAAGGAGAATGGTACATCCTCCGGCTTTTAATTGGGATAGGTAAATTTTGCAGGTCCAGGACTTAAATTCCCTTGATGGGCTCCGCCCGCTATTTCACAGGAAGGGAGATCCCCGACCTTCTTGGCTTGGGTTTGATGAAGAAAAGTCGCAAATGGGAAAAAGTTTCCCCCCAAACCTTGGCTATTACTCCCTCCCGGAAAATTGGGGGCCGGGAAAAAACTTATCTCCAATAAACAAACCGGGGCCTCTTAAGGGCCTTTCTAATATTATTAAATTTAAAGGGGAATGCTTTTTTTGGAGCCAACCCTGCCTAAATAAAAAAAAAAGGGCCCCCTTTGACGGTTAAACCATGTGGGAAACCTTGGGGGATTTTGTGCCAACCGGTCCAAGGGGAAACCTCCTTGGAATCCGGGGGGTAACCCACCTTATTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTCCTATGAGCAAAATATATTTTCTGAACACGGGCGAAAAAGACCTCCAATATGGTTGTTTTTATAAGGAAAAGTTTAAAGAAACCACGAGCGCCCGGGTTTTCTTTTAAACGCCTCTCACAAAGTTTTGCCTGGGCTCGTTTCCCCGGCCATTTTTAAGTAAAGAACTTGTCGGTAAATTCCCGGGGTATTTTCCACCTCAGGGAAAAGAGGTTCCCCATTTCCCTTTCCAAAAAAGGAAAAAATTTCCCTTTTTTTTTCTTAAATTAAAGGTGGGCGATGATATTCCGGCCAGGAATAGAATTTTAAATTAAAATGGTATGGGGAATATTGGGGGATTTTATTGGGTATTTGGTGGGCTTCTTCCCAGTTCAGAAATTTTTTGGTTACCCCTTATTTTTGGTCCCTAAGGCTTCACCACCAAAAGGGAAACAGAGAAAGGAATTCATGCCTTAGATTTTCGCGGCTTCGGTAGTATCACTCTCTTTTGAAGGCATTTTGTAGCTGTTAGTTCCCTTGGGATTTCCCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAAAAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCCCAACAATAGGTTAGCAAATCTTTTTGGCTGTTTTTGTGAGGGTGATGAGAGGTTCCTAGTTCCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATTTTTTTCATTGTAAGGGCATTCCCATTGATTCTTTTGTTTCCCCCCTCTGGACTGGTTTCCCTCCAAGGGGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCCCTTTCTCTATTTATTCCCCACATGGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGTGTTGTAGCTTTTGGGGTTGGTTAGGCCAAGGTGTCATATCTTTACAAATATTAATGTTGAATACTAGAATAGCGGAACGAATTTTGTTGTAGGGATTTTTCGCTAAACTGATAAATACAAGCTGGATGAGACTACAGTTTGATCTGTTAAATTCTAATTTCTAACAAGAAAGCAAGAGCAGATCCAATCTGCGAGCTTCTTCTGATAATCCCCAAATAAAACCTTGGGTTCATGCACTGTTCCATTTTAGAAAATGATTTCCCAAACAAAGGCTAGGTTTCTAATTCTGTTCTCAGATATATTTGCTTATCAGAAATGATATTGTGAGTGTTTAGTATCAAGTCCATACACAAAGTTCATTATACAGATTCTACATCATACACATCAGTTTACTTTACCTAGAGAGCAACTATGGGAAAATACAAAATGAGATTGGATCCGTATTTGATTTAATTGCTTTAAGGAAGACTGAAAAATCATGAATTTACTTAGAAAGATAACATATTTCTCTGATAGTGATTCATAGAATTCAGTACTTATTTGTGAGAGCTTAACTCAGGGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGT-GGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAAGTAAGTAGATTGTTACATCTTCAGTCTTTTAATTGGTATAGTTAAATTTTGCAGTTCAAGTACTTAAATTCCTTTGATGGTCTCTGCCGTCTATTTCACAGGATGGAGATCCCCGACTTTCTTGCTTTGGTTTGAT</genome_strand>
        <mrna_strand>TCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACACACAACCAATGAAGAGGGCAATGCGGTTAAGGGTGGGCGTTGTATATTGCACAGGCTCTAGAATATAGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGGTTATAGAATATTATTCGGAGAA.....................................................................................................GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333544" ref_strand="+" ref_description="SGN-E333544 [cTOD-22-K13]">
      <seq>aaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagtttgtgttttggaatttataacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaaaatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgctggactggagagagtggccccattcacgaggctcagaatcctgatgaagaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatggcgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttttagaagaagcaagggctgttggtcaactccgcaacaataggttagcaaatcttcttggctgttgttgtgagggtgatgagaggttgctagttgcagaattcatgcccaaagagacgcttgcaaaacatctttttcattgggacacacaaccaatgaagtgggcaatgcgggtaaagggtggcgttgtatattgcacaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42485" stop="36753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42185" g_stop="42140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="114" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="296" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40626" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="514" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40174" g_stop="40039" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="650" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40038" i_stop="39288" i_length="751">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39287" g_stop="39225" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="714" r_length="64" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E333544" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42185" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40626"/>
          <exon e_start="40174" e_stop="40039"/>
          <exon e_start="39287" e_stop="39225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATTGTAAGTGCATTCACATTGATTCTTTTGTTTCCCACCTCTGGACTGGTTTCACTCCAAGGTGGGTAACTAATTCGGATTTAGTTCGCTTGCGAGATGCGAGATGCTAGTTTTTAATTGTTTTTGTTTTCTTCACTTTCTCTATTTATTCCCCACATTGGTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGTTTTAACTTTTGGGGGTGGGTAGGCCCAGGGGGCATATCTTTACAAAAATTAATGGTGGAAACTAGAATAGCGGAACGAATTTTGTTGGAGGGATTTTTCGCTAAACTGAAAAAAACAAGGGGGGTGAGACTACCGGTTGGACTGGTAAAATCTAATTTCTAACCAGAAAGCAAGAGCCGATCCCATCTGGGGAGCTTCTTCTGATAATCCCCAAAAAAAACCCTGGGGTCCTGCCCCGTTCCCTTTTAGAAAAAGATTTCCCCAAAAAAGGCTAGGGTTCTAATTCTGGTCCCAGAAATATTTGCTTATCAAAAAAGATATTGGGAGGGTTTAGGATCAAGGCCCTACCCAAAGGTCATTATACAGATTCTACCTCATACACATCAGTTTACTTTACCCAGAGGGGAACTTTGGGAAAATACCAAAAGGGATTGGGTCCCGATTTGATTTAATTGCCTTAAGGGAGACTGGAAAATCCTGAATTTTCTTAGAAAGATAACCTATTTCTCTGATAGGGGTTCCTAGAAATCCGGACTTATTTGTGAGAGCTTAACTCCGGGGACACACAACCCATGAAGTGGGCCATGCGGGT-AAGGGGGGCGTTGTATATTGCACAGGCTC</genome_strand>
        <mrna_strand>AAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG...................................................................................ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACACACAACCAATGAAGTGGGCAATGCGGGTAAAGGGTGGCGTTGTATATTGCACAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442851" ref_strand="+" ref_description="SGN-E442851 [cSTA-35-A10]">
      <seq>cacgaatttactccactgtcagcagaagctgttatttggaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgttaataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcatgaggctcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggattgctacatctgcatttgctgtagagaatatagtttctgaacatggtgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggcaggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttttagaagaagcaagggctgttggtctactccgcaacaataggttagcaaatcttcttggctgttgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42478" stop="39808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42178" g_stop="42140" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.362" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="107" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="289" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40626" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="507" r_length="218" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40174" g_stop="40108" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="574" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E442851" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42178" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40626"/>
          <exon e_start="40174" e_stop="40108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTG</genome_strand>
        <mrna_strand>CACGAATTTACTCCACTGTCAGCAGAAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGTTAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCATGAGGCTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGTGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCAGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAAGGGCTGTTGGTCTACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311062" ref_strand="+" ref_description="SGN-E311062 [cLEZ-17-F22]">
      <seq>taacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaaaatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgctggactggagagagtggccccattcacgaggctcagaatcctgatgaagaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatggcgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttttagaagaagcaagggctgttggtcaactccgcaacaataggttagcaaatcttcttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="41747" stop="39816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41447" g_stop="41404" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="226" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40843" g_stop="40626" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="444" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40174" g_stop="40116" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="503" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E311062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41447" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40626"/>
          <exon e_start="40174" e_stop="40116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTAGTAAGAGCTTGTCTGTTAATTCCTTGGTATATTTCAACTCTATGGAAAAGACGTTCCCATATCCATCTACTAAAATGATATAATTTCCTTTTTCTTTTCTTATATTAAATGTTGACGATGATATTCATGACAAGAATAGAAATTTAAAATAAAATAGTAATGAGAATAATTGGAGATCTTATTGAGTATTTGGCTGGCATCATTCCAGTTCAGAAACTTTTTTGTTACTCCTTATATTTTGTACCTAATGCATCAACAACAAAATGGAAACAGAGAAATGAATTCATGCCTTAGATTTTCGCTGCTTCTGTAGTATCACTCTCTTTTGAATGCATTTTGTAGCTGTTAGTTCACTTGTGATTTACCTGCTGACAAATACTTAAATCCTCAATAGATTGTGGTTAAGCAATAGATTCGGACTTGATGTTCTCTCTTCATATGGAAACTTCAGGAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTG</genome_strand>
        <mrna_strand>TAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG...................................................................................ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448887" ref_strand="+" ref_description="SGN-E448887 [cSTS-4-B20]">
      <seq>atctgtacaatcacatttttcattccatctcatctactctgtaattgtttatatgtatattctcactttctactaactcctttctctttcttctccactttattgatcttttgtgtctacagttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgataataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcatgaggttcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctgaggattgctacatctgcatttgctgtagagaatatagtttctgaacatggtgaaaaagctccaaatgttgtttataaaggaaagctagagaaccatgagccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42618" stop="40327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42318" g_stop="42140" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="247" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="429" r_length="182" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40627" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="646" r_length="217" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E448887" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42318" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTT</genome_strand>
        <mrna_strand>ATCTGTACAATCACATTTTTCATTCCATCTCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTAACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGATAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCATGAGGTTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTGAGGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGTGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCATGAGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316192" ref_strand="+" ref_description="SGN-E316192 [cTOA-23-M21]">
      <seq>aatcatgaaagagccacgaaaattgtgctttagtttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagtttgtgttttggaatttataacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaaaatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgctggactggagagagtggccccattcacgaggctcagaatcctgatgaagaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatggcgaaaaagctccaaatgttgtttataaaggaaagctagagaaccagaggccggttgctgttaaacgcttcaacagatctgcatggcctgattcccggcaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42671" stop="40328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42371" g_stop="42338" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42337" i_stop="42197" i_length="141">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42196" g_stop="42140" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="91" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="159" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="341" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40843" g_stop="40628" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="557" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E316192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42371" e_stop="42338"/>
          <exon e_start="42196" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTT</genome_strand>
        <mrna_strand>AATCATGAAAGAGCCACGAAAATTGTGCTTTAGT.............................................................................................................................................TTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG...................................................................................ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600978" ref_strand="+" ref_description="SGN-E600978 [54002]">
      <seq>ctacagttaatttaaacaaagaatcacgaatttactccactgtcagcagaagctgttatttggagttcaggtggtggtgaagttttctgttaattcagttgaaaaaggaagatttttgatgggggcagaatttggtttctttgcagaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgttaataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcatgaggctcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggattgctacatctgcatttgctgtagagaatatagtttctgaacatggtgaaaaagctccaaatgttgtttataaaaggaaagctagagaaccagaggcaggttgctgttaaacgcttcaaccagatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42502" stop="40350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42202" g_stop="42140" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41555" i_length="585">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.414" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41554" g_stop="41404" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="214" r_length="151" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="396" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40650" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="592" r_length="196" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E600978" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42202" e_stop="42140"/>
          <exon e_start="41554" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTAT-AAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAA-CAGATCTGCA</genome_strand>
        <mrna_strand>CTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGAAGCTGTTATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAGGTGGTGGTGAAGTTTTCTGTTAATTCAGTTGAAAAAGGAAGATTTTTGATGGGGGCAGAATTTGGTTTCTTTGCAGAAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGTTAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCATGAGGCTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGTGAAAAAGCTCCAAATGTTGTTTATAAAAGGAAAGCTAGAGAACCAGAGGCAGGTTGCTGTTAAACGCTTCAACCAGATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446706" ref_strand="+" ref_description="SGN-E446706 [cSTA-22-N1]">
      <seq>aaattgtgctttagtgttagtactccaaagagggatctgtacaatcacatttttcattccatctcatctactctgtaattgtttatatgtatattctcactttctactaactcctttctctttcttctccactttattgatcatttgtgtctacagttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagttcatgttttggaatttattacgtggattttcagttcgctcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaaatccaagctactatatctttaaagactttatatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcacgaggctcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggattgctacatctgcatttgctgtagagaatatagtttccgaacatggtgaaaaagctccaaatgttgtttataaaggaaagctagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42652" stop="40392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42352" g_stop="42140" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="281" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="463" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40692" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="615" r_length="152" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E446706" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42352" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAG</genome_strand>
        <mrna_strand>AAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCCATCTCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTAACTCCTTTCTCTTTCTTCTCCACTTTATTGATCATTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCATGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAAATCCAAGCTACTATATCTTTAAAGACTTTATATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCCGAACATGGTGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314027" ref_strand="+" ref_description="SGN-E314027 [cTOA-19-P6]">
      <seq>gtatattctcactttctactgactcctttctctttcttctccactttattgatcttttgtgtctacagttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagtttgtgttttggaatttataacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaaaatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgctggactggagagagtggccccattcacgaggctcagaatcctgatgaagaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatggcgaaaaagctccaaatgttgtttataaaggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42564" stop="40397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42264" g_stop="42140" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="375" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40697" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="522" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E314027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42264" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGC</genome_strand>
        <mrna_strand>GTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG...................................................................................ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442852" ref_strand="+" ref_description="SGN-E442852 [cSTA-35-A12]">
      <seq>cacgaatttactccactgtcagcagaagctgttatttggaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgttaataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcatgaggctcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaagattgctacatctgcatttgctgtagagaatatagtttctgaacatggtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42478" stop="40425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42178" g_stop="42140" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.362" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="107" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="289" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40725" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="408" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E442852" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42178" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAA</genome_strand>
        <mrna_strand>CACGAATTTACTCCACTGTCAGCAGAAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGTTAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCATGAGGCTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAAGATTGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244358" ref_strand="+" ref_description="SGN-E244358 [cLEF-3-M7]">
      <seq>aaaggacaagtttatgtagggtggaaaatcatgaaagagccacgaaaattgtgctttagtgttagtactccaaagagggatctgtacaatcacatttttcattctatcccatctactctgtaattgtttatatgtatattctcactttctactgactcctttctctttcttctccactttattgatcttttgtgtctacagttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagtttgtgttttggaatttataacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaaaatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgctggactggagagagtggccccattcactaggctcagaatcctgatgaagaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggatagctacatctgcatttgctgtagagaatatagtttctgaacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42697" stop="40432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42397" g_stop="42140" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="326" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="508" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40732" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="620" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E244358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42397" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGG</genome_strand>
        <mrna_strand>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACTAGGCTCAGAATCCTG...................................................................................ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443886" ref_strand="+" ref_description="SGN-E443886 [cSTA-40-F15]">
      <seq>cacgaatttactccactgtcagcagaagctgttatttggaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgttaataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggatagtgtgatgggctgtgaaagttctaaacttgcctcgtgttgctggactggagagagtggccccattcatgaggctcagaatcctgatgaggaaaaaaatgaagttagtgattcacctgcattctgcgagtttacatttgagcagctcaggattgctacatctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42478" stop="40463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42178" g_stop="42140" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.362" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="107" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="289" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40843" g_stop="40763" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="370" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E443886" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42178" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
          <exon e_start="40843" e_stop="40763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTGGTATGTATATCTTTTATTGAAATATTTTCTATATAACCATCCTACTGCAGTGTTTAATAAATTTTTTTTCACGCTTCTCGTAGATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCAT</genome_strand>
        <mrna_strand>CACGAATTTACTCCACTGTCAGCAGAAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGTTAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCGTGTTGCTGGACTGGAGAGAGTGGCCCCATTCATGAGGCTCAGAATCCTG...................................................................................ATGAGGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATTGCTACATCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333809" ref_strand="+" ref_description="SGN-E333809 [cTOD-22-H4]">
      <seq>aaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagtttgtgttttggaatttataacgtggattttcagttcactcagctttgatatgatattaaagccaaatgcagatcttgaagccgcataaagtgtaatttgtcgggttgtgctacaaactccaagctactatatctttaaagacttaanannatctgtaggatagtgtgatgggctgtgaaagttctaaacttgcctcatgttgcctggactggagagagtggccccattcacgaggctcagaatcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42485" stop="40625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42185" g_stop="42140" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="114" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="40927" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="300" r_length="186" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E333809" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42185" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="40927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAA-A--ATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTG-CTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG</genome_strand>
        <mrna_strand>AAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAANANNATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486470" ref_strand="+" ref_description="SGN-E486470 [cSTE-22-C2]">
      <seq>ctttattgatcttttgtgtctacagttaatttaaacaaagaatcacgaatttactccactgtcagcaggagctgttatttggaaaaagttcgtgttttggaatttattacgtggattttcagttcgctcagctttgatatgataataaagccaaatgcagatcttaaagccgcataaagtgtaatttgtcgggttgtgctataaactccaagctactatatctttaaagactttaaatctgttggataaagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="42521" stop="40704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42221" g_stop="42140" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.362" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41471" g_stop="41404" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="150" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295">
            <donor d_prob="0.637" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41108" g_stop="41004" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="255" r_length="105" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E486470" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42221" e_stop="42140"/>
          <exon e_start="41471" e_stop="41404"/>
          <exon e_start="41108" e_stop="41004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGGGTTAGTTTTTTATATGGGTTCTTGTTGTTTTTGAGTTTTGTAAGTGGGTTTTGGTGCATTTAGCTTAAAGTTTTAATCTTGATGTGGGTTGAAGTAAGAATCAAGATTTCATTTTTAATGTTCTTTCTCATGTATTTCTTGAGCTGTATGTAGATATGATATGTAGATATTTTATTTTTCATGGTTGTGTGTTTTAGGTGGATTTTGTATGGCATTTAGCTTGAGCTTTGATTTGACTTGGGTTGACCTATATATAACTTATTGGGTTAGTTTCTATATGGGTTCTTGTTGTTTCTGTATGTTGGGTTTGGTGCATTTACCTTAAAGCTCTAATCTTGATGTTGGTTGAAGAAAGAATCAAGATTTCATTTTTACTGCTCTTTCTCATGTATCTCACTGAGCTGTATGTAGGTACATGTGTATGTGTAGATGGATTTTTATGGTTGTGTGTGTTTTTAGGTGGATTCTGTATGCATTTAGCTTGAACTTTGATTTGGACTTGGGTTTTTATTTTTGTGTGTGTTTTAGGTAGATTTTTTATGCATTTAGCTTGAGCTTTAATTTGACTTGGGTTGACCCATATAGAGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAGGTACTTTCTTGTGCTGATTCTGCTTATGCTAGTAGTTTGATTTCTGATGGAGCGCACTAAAATGTACATTATGCATATGTTGTTGTTGAAAAAGATTGGCCTGAGTGGAGAGAAATGGATATAGACGATTTATATAGCCGACTCCAACTAGTTTATGTTCAAGGGAATTGTTAATGAATGACAATTTTGTTGCAATTCTTTGAAACTTGACGATTTCTGTCTTTTTCGGGTGTCTAACTAAGATAACCTTACAAGAAGCACAATGCACTTGAATTGACAATTTGGTTCAATGCAGCCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGAT</genome_strand>
        <mrna_strand>CTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTTCGTGTTTTGGAATTTATTACGTGGATTTTCAGTTCGCTCAGCTTTGATATGATAATAAAG.......................................................................................................................................................................................................................................................................................................CCAAATGCAGATCTTAAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTATAAACTCCAAGCTACTATATCTTTAAAGACTTTAAATCTGTTGGATAAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396980" ref_strand="+" ref_description="SGN-E396980 [TUS-44-J23](-)">
      <seq>cacagagaaatgacttctcaaggaattgaagactgtaacacaaatgaggatatttctgctgttgcgaaaccagaagatatagagaacttcagtttaaaactttggcagcaaatgaaaagcttgtaatatattcaagaatcattaagagtcttgtaatatatatatatattatttgaatataaacattgaattaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43424" stop="42626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43124" g_stop="42920" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E396980" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43124" e_stop="42920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGAGAAATGAGTTCTCAAGGAATTGAAGAGTGTAACACAAATGAGGATATTTCTGCTGTTGCGAAAGCATAGGATATAGAGAACTTCAGTTTAAAACTTTGGCAGCAAATGAAAAGCTTGTAATATATTCAAGAATCACTATTATTCTTGTAATATATATATATATTATTTGAATATAAACATTTAATTAATAGAATTTGAA</genome_strand>
        <mrna_strand>CACAGAGAAATGACTTCTCAAGGAATTGAAGACTGTAACACAAATGAGGATATTTCTGCTGTTGCGAAACCAGAAGATATAGAGAACTTCAGTTTAAAACTTTGGCAGCAAATGAAAAGCTTGTAATATATTCAAGAATCATTAAGAGTCTTGTAATATATATATATATTATTTGAATATAAACATTGAATTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353694" ref_strand="+" ref_description="SGN-E353694 [cTOS-10-L10]">
      <seq>tggtgtcaattgacaaaattgttgaagaaatgtcccagatggatctttctcctgaccgagttgtatataacgagctcgtccattgctatgctctacacggagaagttcaaaagtcacttgctatgcaccaagagatggtggaacgaggaattccttctgacaaaaggacatacaatagcttgattatggtgcatttgaaagagggaagatgtcaagaagccaagaattttgttgatcagatgaaggctaacagtatcgttccgagtgatgaaacttataatattttggttgaagggcattgcaagcttaaagatttttccggtgcatacatttggtacagagagatggttgacaatggttataccccaccagccaatatttgcgaggagttattatctggtcttctagaggaaggaagattggaagagacacagagaaatgagttctcaaggaattgaagagtgtaacacaaatgaggatatttctgctgttgcngaagcatangatatagagaacttcagtttaaaactttggcagcaaatgaaaagcttgtaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="43853" stop="42697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43553" g_stop="42997" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E353694" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43553" e_stop="42997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTCAATTGACAAAATTGTTGAAGAAATGTCCCAGATGGATCTTTCTCCTGACCGAGTTGTATATAACGAGCTCGTCCATTGCTATGCTCTACACGGAGAAGTTCAAAAGTCACTTGCTATGCACCAAGAGATGGTGGAACGAGGAATTCCTTCTGACAAAAGGACATACAATAGCTTGATTATGGTGCATTTGAAAGAGGGAAGATGTCAAGAAGCCAAGAATTTTGTTGATCAGATGAAGGCTAACAGTATCGTTCCGAGTGATGAAACTTATAATATTTTGGTTGAAGGGCATTGCAAGCTTAAAGATTTTTCCGGTGCATACATTTGGTACAGAGAGATGGTTGACAATGGTTATACCCCACCAGCCAATATTTGCGAGGAGTTATTATCTGGTCTTCTAGAGGAAGGAAGATTGGAAGAGACACAGAGAAATGAGTTCTCAAGGAATTGAAGAGTGTAACACAAATGAGGATATTTCTGCTGTTGCGAAAGCATAGGATATAGAGAACTTCAGTTTAAAACTTTGGCAGCAAATGAAAAGCTTGTAATA</genome_strand>
        <mrna_strand>TGGTGTCAATTGACAAAATTGTTGAAGAAATGTCCCAGATGGATCTTTCTCCTGACCGAGTTGTATATAACGAGCTCGTCCATTGCTATGCTCTACACGGAGAAGTTCAAAAGTCACTTGCTATGCACCAAGAGATGGTGGAACGAGGAATTCCTTCTGACAAAAGGACATACAATAGCTTGATTATGGTGCATTTGAAAGAGGGAAGATGTCAAGAAGCCAAGAATTTTGTTGATCAGATGAAGGCTAACAGTATCGTTCCGAGTGATGAAACTTATAATATTTTGGTTGAAGGGCATTGCAAGCTTAAAGATTTTTCCGGTGCATACATTTGGTACAGAGAGATGGTTGACAATGGTTATACCCCACCAGCCAATATTTGCGAGGAGTTATTATCTGGTCTTCTAGAGGAAGGAAGATTGGAAGAGACACAGAGAAATGAGTTCTCAAGGAATTGAAGAGTGTAACACAAATGAGGATATTTCTGCTGTTGCNGAAGCATANGATATAGAGAACTTCAGTTTAAAACTTTGGCAGCAAATGAAAAGCTTGTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279432" ref_strand="+" ref_description="SGN-E279432 [cLER-11-D13]">
      <seq>tgtgcagacgtataacatcttaattgacggatatgggcgcaagcaggaattcgtgaggtgttttgagattctcgaggagatggaaaataacggattgaatcctaatgtaattacctatggttctctaatcaattctttgtgcaaggatggtaggcttcttgaagctgatgtagtcctaagtgatatgatcagtagaggggttaaaccaaatgcgcaggtctataatatgcttatagatggacattgtatgagaggaaggatgactgatgcttttagatgcttggagaagatgctacaaagtgatgcggaaacaacactcgttacatacaatactctattaaatgggctttgcaaaaagggtaagaccaaagaagctgaggagttggtcgcggatattcaactcaaaggtttcgttccagatgttatcacatacaattctttaatctctgcgtattcagatgcacgggacagtgaaaagtgttatgaaatgtatgagaagatgaaaacctctggcataaaacctacaatcaacacaattcatcctctaattagagtgtccaaagagggaaagaatggactggtgtcaattgacaaaattgttgaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44431" stop="43222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44131" g_stop="43522" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E279432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44131" e_stop="43522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATGAAATGTATGAGAAGATGAAAACCTCTGGCATAAAACCTACAATCAACACAATTCATCCTCTAATTAGAGTGTCCAAAGAGGGAAAGAATGGACTGGTGTCAATTGACAAAATTGTTGAAGAAATG</genome_strand>
        <mrna_strand>TGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATGAAATGTATGAGAAGATGAAAACCTCTGGCATAAAACCTACAATCAACACAATTCATCCTCTAATTAGAGTGTCCAAAGAGGGAAAGAATGGACTGGTGTCAATTGACAAAATTGTTGAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329195" ref_strand="+" ref_description="SGN-E329195 [cTOD-2-F18]">
      <seq>acaagtggttaaagaaaatgctggagaaggcagtttcccctaatgtgcagacgtataacatcttaattgacggatatgggcgcaagcaggaattcgtgaggtgttttgagattctcgaggagatggaaaataacggattgaatcctaatgtaattacctatggttctctaatcaattctttgtgcaaggatggtaggcttcttgaagctgatgtagtcctaagtgatatgatcagtagaggggttaaaccaaatgcgcaggtctataatatgcttatagatggacattgtatgagaggaaggatgactgatgcttttagatgcttggagaagatgctacaaagtgatgcggaaacaacactcgttacatacaatactctattaaatgggctttgcaaaaagggtaagaccaaagaagctgaggagttggtcgcggatattcaactcaaaggtttcgttccagatgttatcacatacaattctttaatctctgcgtattcagatgcacgggacagtgaaaagtgttatgaaatgtatgagaagatgaaaacctctggcataaaacctacaattaacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44474" stop="43296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44174" g_stop="43596" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E329195" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44174" e_stop="43596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATGAAATGTATGAGAAGATGAAAACCTCTGGCATAAAACCTACAATCAACACAA</genome_strand>
        <mrna_strand>ACAAGTGGTTAAAGAAAATGCTGGAGAAGGCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATGAAATGTATGAGAAGATGAAAACCTCTGGCATAAAACCTACAATTAACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396981" ref_strand="+" ref_description="SGN-E396981 [TUS-44-J23]">
      <seq>tgagaagtcagtttcccctaatgtgcagacgtataacatcttaattgacggatatgggcgcaagcaggaattcgtgaggtgttttgagattctcgaggagatggaaaataacggattgaatcctaatgtaattacctatggttctctaatcaattctttgtgcaaggatggtaggcttcttgaagctgatgtagtcctaagtgatatgatcagtagaggggttaaaccaaatgcgcaggtctataatatgcttatagatggacattgtatgagaggaaggatgactgatgcttttagatgcttggagaagatgctacaaagtgatgcggaaacaacactcgttacatacaatactctattaaatgggctttgcaaaaagggtaagaccaaagaagctgaggagttggtcgcggatattcaactcaaaggtttcgttccagatgttatcacatacaattctttaatctctgcgtattcagatgcacgggacagtgaaaagtgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44452" stop="43347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44152" g_stop="43647" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E396981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44152" e_stop="43647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATG</genome_strand>
        <mrna_strand>TGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329390" ref_strand="+" ref_description="SGN-E329390 [cTOD-2-F19]">
      <seq>aagaggcaaacaagtggttaaggaaaatgcttgagaagtcagtttcccctaatgtgcagacgtataacatcttaattgacggatatgggcgcaagcaggaattcgtgaggtgttttgagattctcgaggagatggaaaataacggattgaatcctaatgtaattacctatggttctctaatcaattctttgtgcaaggatggtaggcttcttgaagctgatgtagtcctaagtgatatgatcagtagaggggttaaaccaaatgcgcaggtctataatatgcttatagatggacattgtatgagaggaaggatgactgatgcttttagatgcttggagaagatgctacaaagtgatgcggaaacaacactcgttacatacaatactctattaaatgggctttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44483" stop="43478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44183" g_stop="43778" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E329390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44183" e_stop="43778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCAAACAAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAA</genome_strand>
        <mrna_strand>AAGAGGCAAACAAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578893" ref_strand="+" ref_description="SGN-E578893 [86015]">
      <seq>gttaattcctcgttagcgttgtatgaagaagtcgttaagacaggcgtgaagttgaatgaatatacgagtagtgttttattgaatagcttgtgcaagaaagggaagacggataaggctgcagagtattttgaagaagatgatgggaaatgggcttactcctacagatgtgttgtttaataccattttgagtggctattgcaaagagggcaatatggagaaggcttatttaactattgacgaaatggagatttctggggtgaaaccgagttgtgtcacatntaatactctgatcacgaaattctgtgaattgggtatgatggaagaggcaatacgagtggttaaggaaaatgcttgagaagtcagtttcccctaatgtgcagacgtataacatcttaattgacggatatgggcgcaagcgggaattcgtgaggtgtcttgagattctcgaggagatggaaaataaccggattgaatcctaatgtaattacctatggttctctaatcaattctttgtgcaaggatggtaggcttcttgaaagctgatgttagtcctaagtgatatgatcagttagaggggttaaccaaatgcgcaggtctataatatgcttatagatggcacattgtatgagaggaaggatgactgatgcttttagatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="44802" stop="43551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44502" g_stop="43851" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E578893" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44502" e_stop="43851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTCCTCTTTAGCGTTGTATGAAGAAGTCGTTAAGACAGGGGTGAAGTTGAATGAGTATACGAGTAGTGTTTTATTGAATGGACTGTGCAAGAAAGGGAAGACGGATAAGGCTGCAGAG-ATTTTGAAGAAGATGCTGGGAAATGGGCTTACTCCTACAGATGTGTTGTTTAATACCATTTTGAGTGGCTATTGCAAAGAGGGCAATATGGAGAAGGCTTATTTAACTATTGATGAAATGGAGATTTCTGGGGTGAAGCCGAGTTGTGTCACATTTAATACTCTGATCACGAAATTCTGTGAATTGGGTATGATGGAAGAGGCAA-ACAAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAA-CGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTG-AAGCTGATG-TAGTCCTAAGTGATATGATCAG-TAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGG-ACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCT</genome_strand>
        <mrna_strand>GTTAATTCCTCGTTAGCGTTGTATGAAGAAGTCGTTAAGACAGGCGTGAAGTTGAATGAATATACGAGTAGTGTTTTATTGAATAGCTTGTGCAAGAAAGGGAAGACGGATAAGGCTGCAGAGTATTTTGAAGAAGATGATGGGAAATGGGCTTACTCCTACAGATGTGTTGTTTAATACCATTTTGAGTGGCTATTGCAAAGAGGGCAATATGGAGAAGGCTTATTTAACTATTGACGAAATGGAGATTTCTGGGGTGAAACCGAGTTGTGTCACATNTAATACTCTGATCACGAAATTCTGTGAATTGGGTATGATGGAAGAGGCAATACGAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCGGGAATTCGTGAGGTGTCTTGAGATTCTCGAGGAGATGGAAAATAACCGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAAGCTGATGTTAGTCCTAAGTGATATGATCAGTTAGAGGGGTT-AACCAAATGCGCAGGTCTATAATATGCTTATAGATGGCACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576490" ref_strand="+" ref_description="SGN-E576490 [59716]">
      <seq>gcacgaggttaagctccatcgtgcttcaaatttgccggcacaggtaatcaccatttccctgcaaattcttccgttcanactccatttctaccccaagaagaactcagttcaatcaacaatgaaaaccccacaaattcttcatcccaaaatcttgaagaacagctccggcagctccggattctacttcaacaacgtcgtatggaaaatgcaaaaggaattttgggtacccttattcatacaagttcagtttctcaactttactctctcttttcaccttcccctgctaaacccctttcctcagatttgctattttcactgtatttacagtcgaaactcattaaccaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="45772" stop="44819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45473" g_stop="45119" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E576490" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45473" e_stop="45119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATGCTTAAGCTCCATCGTGCTTTCAAATTTGCCGGCACCGGTAATCAACATTTACTCTGCAAATTTTTCCGTTCA-ACTCCATTTCTACACCAAGAACAACTACTCAGTTCAATCAACAATGAAAATCCCACAGATAGTCCATCCCAAAATCTTGTAGAACAGCTCCGGCAGCTTCGGATTCTAATTCAACAACGTCGTATGGAAAATGCCAAAGGAATCTTGGGTACCCTTATTCATACAAGTTCAGTTTCTCAACTCTACTCTCTCTTTTCACCTTCCCCTGCAAAACCCCTTCTCTCAGATTTGCTATTTTCACTGTATTTAGAGTCGAAACTCATTAACCAAGCTGA</genome_strand>
        <mrna_strand>GCACGA-GGTTAAGCTCCATCGTGC-TTCAAATTTGCCGGCACAGGTAATCACCATTT-CCCTGCAAATTCTTCCGTTCANACTCCATTTCTACCCCAAGAA-GA--ACTCAGTTCAATCAACAATGAAAACCCCACAAATTCTTCATCCCAAAATCTTGAAGAACAGCTCCGGCAGCTCCGGATTCTACTTCAACAACGTCGTATGGAAAATGCAAAAGGAATTTTGGGTACCCTTATTCATACAAGTTCAGTTTCTCAACTTTACTCTCTCTTTTCACCTTCCCCTGCTAAACCCCTTTCCTCAGATTTGCTATTTTCACTGTATTTACAGTCGAAACTCATTAACCAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403728" ref_strand="+" ref_description="SGN-E403728 [PPC-11-F13]">
      <seq>tttgcagccccaaataccgacagcccctcttcacggcatacttcccacaaaaatacttgctgtgctgagtactgagtgctgactggccagccttcttggtcctcttagccccgtaaggaagcaaaaagggttgaagaagagactacctagcagcggcaacaaaccctgtctttcaagaataagggattacttctattgttggaatttcatccccaaataggaatgacattaaagggcagtttagttcaaaagataggtaatgcaattatggaagtcgcaaggaacaaaggctcaacatggtggtacacacctcacatggctgcagcatctcgtgccataaccgaacggatcccattggttgatattcttcttgaagtcagagatgctcggattcctttatcatcagcatgtgagctaattaagcatcattcgccttcctcgaggcgcattattattctgaacaagacagatttagcaaatcacattcaattaaaggaatggctgaaatactttgaggaacaaaagtgtcttgtttttggagtcaattcccataataaggataacatcaaagagacttgcagttactgaactttctgcgagccagagttcgagaattaccaaagattggtcatggggatcagacaattacattaatgcttgtcggcattcctaatgttgggaagtctgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="48105" stop="51955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48405" g_stop="48626" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48627" i_stop="49593" i_length="967">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49594" g_stop="49763" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="390" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49764" i_stop="50771" i_length="1008">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50772" g_stop="50876" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="495" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50877" i_stop="51118" i_length="242">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51119" g_stop="51196" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="573" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51197" i_stop="51536" i_length="340">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51537" g_stop="51655" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="692" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E403728" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48405" e_stop="48626"/>
          <exon e_start="49594" e_stop="49763"/>
          <exon e_start="50772" e_stop="50876"/>
          <exon e_start="51119" e_stop="51196"/>
          <exon e_start="51537" e_stop="51655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGCCCCAAATACCAACTGCCCTTCCTCTTCACGGCATACTTCCCACAAAAATACTTGCTGTGCTGAGTTCTGCGTGCTGATTGGTCAGCCCTTCTTGGTCATCTTAGCCCCATAAGGAAGCAAAGAGGGTTGAAG-A-AGACTACCAAGCAGCGGCAGCAAACCCTGTCTTTCAAGAATAAGGGATTACTTCTATTGTTGGAGATTCATCCCCTAATAGGTAAAAATCGAATCTTTGTACACTTCATTGAGTTTCTTTGAGCTTGTGAACTTTCTTTAGCATTTAAAATTTAGCATCTTTTGGTTGATTTCTTACTGTATTTGAAAAAAAAAAAAAAAAAAAACTCATTCTTTATCCACTTTATATGAGTTTAGAGTTAATACTGATAATGGAGCTCCCACCCGAAGAATTCCTCCTTCCTAATTTGTGGTGTTGGGTGAGGCCTAGTGGTTAATGAAGAAAATTGAGCACACGAGGTCTCGGGTTCTAATTTGAGCATAGACAAACACTAGGTGATTGTATTCATGTGCTCCTAGTTTGGTGGATAGAGTTAACTTGTACCTGGTATTTGTTGCTACTGGGAGGTGGTAGGTATCCCGTAGAATTAGTGAAGGTGTGCGGAAGTGGGTTCGGAGACCATGGTTATTGAAAAGAAACTGTTTTCGGTGTACAGCTTCTGGAGAAGATTTATCTTATCTTGCTTTTTAGGCATTTCAAGGTTCGGTCTTTTCCATTAGGAGTAGTACTTCTCACTAGTCTTGGATCAAAACTGACCCACTTTTGCTAAATAGGATTATTAAGGTTCAGGAGTATATAAAACTTTCCGAATTTTTCTCCTGGAGCCTAAGTGTGTTCTAGAAAAGGGAATATATTAGTTATTAACTCATTATCGTTATACTAAGCACAACGCTGGTAGTTATCTTTCACTGCTGGTTGATATTTTGGGGAGAGTATATTTTTTAATTCGTCAAATGAAATTAGCTTAAATGAAAGTGGGGATTCATATAGGGGACCCCAACTTGTTTGGGACTGAGGAATAGAGTAGCATTAGTTGTAGTTGTAGTGGTTGATTTGTATGCATGTCTAATGATTTATGGAAATAAAAATACTTTGCTTCGACTTCGGATTTTGGGTAAAATGCTAATCCATCTATGCTCCGACCCAGCTTATTTATTGTTTTGCTCAGGAATGACATTAAAGGGCAGTTTAGTTCAAAAGATAGGTAATGCAATTATGGAAGTCGCAAGGAACAAAGGCTCAACATGGTGGTACACACCTCACATGGCTGCAGCATCTCGTGCCATAACCGAACGGGTCCCATTGGTTGATATTCTCCTTGAAGTCAGAGATGCTCGGGTATGTATAAACCCTATCCTTCATGAATCTTTTCCTTTAAATTGTTGCCGCTACATGTTTGATTAAACGTCAGATCAAGCTTGCTAGTATTACTCCGTAAAACACTTTGTTTTGTGATGTGGTCTTTGAATAATATATTATGTTTGTGAATAAGCTATTTATTCTTTTAGACATGTGTCCTCTTGTCAACAAGTGTTGACCTCGCATGAATCCATCCTGCATGATCTGTTCATATCAATTATGAAAAATTGGGAAGTTCGGCTTTGTGTAGTGCGGTTTGTGGGTTGGAGTTCAGCATATCAAGAAGTATGCACCATTTCTGTGATAGACCATTACTATTGGCCTCTTTTGGTAGATAACCAGCTATTCGTTATCATCCAGGGCCTTTTTCTATGTTGATTTGAAGTATCAAAACAAATACACAAGTGTATATAGAATGAGCATAAAGAAATTTAAAAAAGAAAGGAAAAGTAACATCATTGCTAGATATATTGATATAATTGTCAAGTTCCTAAAGGTTGACCGAGTAGTTCAGGCATATTAGTAGAAACCTGAAGGCTCAAGGCTTGAATCTCAGCTACAACACTTGTGGTGAGCCCATCTTCTCCATCCTTGATGGAGTGGTGCTCGACACCTGTGCTTGTGGATTGTAGCTGACTGCTTGGTATATTTAGTAGAAGATTATGCAAGTTGGCTCAAACACCACCACCAATTCACCACAAGAATAACAACCCAGTGTAATCTCACAAGTGGGGTCTGGAGAGGCTGGTGTACAGTGTGTACGCTAACCTTACCCCTACCTTGTGAAGGCCTCAAACACCACCATCATGTATGAAATTGAAAACTTGGCACAATTGTCTATGGCATTCATGGGGAGTATTTCGTTATGAACTCAGTGATAATTCGATATATGTTCAATCATGTCCCAGTTCCTTTGTTTACGAGGATATGCTTGTATAACTATCCTCTAATTTTTTATTCTTATATTTCCGCTTTGGCTTTTCTCAGATTCCTTTATCATCAGCATGTGAGCTAATTAAGCATCATTCGCCTTCCTCGAGGCGCATTATAATTCTGAACAAGACAGATTTAGCAAATCAAATTCAATTAAAGGTGATGTCTTGCTCTTCACTTTTTTAGTGAGCTGGCTGCTGCTTCTCTTGACAATTATTCATCTAGCTGATTCCTCGATACCCCCTTCTCTAGCCACACCTTAATATGATAATGAGCAGCATACATGATAGCTTTTTGTTGTTAGGCATTACTTCCAGTCCCAAATTATTGCAGATTTTGTCATATATCCTTTTTGCTTGCATCTGTTTACATGTACAGATATTTAAATTTGTTTCCTGCAGGAATGGCTGAAATACTTTGAGGAACAAAAGTCTCTTGTTTTTGGAGTCAATTCCCATAATAAGGATAACATCAAAGAGGTAATCATCTGAAAGTTTTCTGCAGTAGATCGTGTTCTAATTTGCAAATTGTTCTAATGTAGCAACACTTGTTGGTTTAATGTCATGTTGGTAAATTGTTGTTCTCAACATATACAACACATAGATCAAAAGGTACATACAGGGTGACTTAAGCCTGCATAGAGTTGAACTTAAATGTTGAACATATGAGGTCAATGCTCTAACAGTATGCAAAGTTTCAGTATAAGGAAGTACTATGAAAAAGGTGTAGGCCTTGATGTTCATCACTAGTTAATCCGAAGACCTTTTATTTCACATGTGGTGCTCATTTGCATCAGATATAAATCTTGACATGTTGCAGACTTGCAGTTACTGAACTTTCTGCGAGCCAGAGTTCGAGAATTATCAAAGATTGGTCATGGGGATCAGACAATCACATTAATGCTTGTTGGCATTCCTAATGTTGGGAAGTCTGCCCTT</genome_strand>
        <mrna_strand>TTTGCAGCCCCAAATACCGACAG-CC--CCTCTTCACGGCATACTTCCCACAAAAATACTTGCTGTGCTGAGTACTGAGTGCTGACTGGCCAGCC-TTCTTGGTCCTCTTAGCCCCGTAAGGAAGCAAAAAGGGTTGAAGAAGAGACTACCTAGCAGCGGCAACAAACCCTGTCTTTCAAGAATAAGGGATTACTTCTATTGTTGGAATTTCATCCCCAAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACATTAAAGGGCAGTTTAGTTCAAAAGATAGGTAATGCAATTATGGAAGTCGCAAGGAACAAAGGCTCAACATGGTGGTACACACCTCACATGGCTGCAGCATCTCGTGCCATAACCGAACGGATCCCATTGGTTGATATTCTTCTTGAAGTCAGAGATGCTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTTTATCATCAGCATGTGAGCTAATTAAGCATCATTCGCCTTCCTCGAGGCGCATTATTATTCTGAACAAGACAGATTTAGCAAATCACATTCAATTAAAG..................................................................................................................................................................................................................................................GAATGGCTGAAATACTTTGAGGAACAAAAGTGTCTTGTTTTTGGAGTCAATTCCCATAATAAGGATAACATCAAAGAG....................................................................................................................................................................................................................................................................................................................................................ACTTGCAGTTACTGAACTTTCTGCGAGCCAGAGTTCGAGAATTACCAAAGATTGGTCATGGGGATCAGACAATTACATTAATGCTTGTCGGCATTCCTAATGTTGGGAAGTCTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368714" ref_strand="+" ref_description="SGN-E368714 [TUS-22-D20]">
      <seq>ggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcagaaagaacaccaaaaacgtatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgtgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactagctttcatcttcccaattttgccaaaagtaaaaatcagagaaatagaaaatgtgtattttttcccttcatattggaacatgcaattttgattatgtttttttgtcctaatttattgtagaacaataatgtcaagagagtaaattttaattcgaaaaagcagagcgattctttctcttcaaaaaaaaaaaaaaaaacaaaaaattatcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60490" stop="62"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60190" g_stop="60163" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58696" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="578" r_length="343" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58695" i_stop="57901" i_length="795">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57900" g_stop="57871" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="608" r_length="30" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E368714" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60190" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58696"/>
          <exon e_start="57900" e_stop="57871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATATGCATTTTCGTTCTTAAATTTGCTCTTAACCTGCCCGCAGAGTGCACTAGAGAGTTCAATTTACGATATGAAAACACATACCCAGGTGAAAAGAGACAGGTTAACTTGTATATTTGAGATGAATGAAGAATTGACGAACCAAACACCGGAGATGGATAGATGATTTGGACAATTCTCTGCTCTTGAGCTATTTTAAAGTCGAGTTAGACTCAACATCCATTTAATCGTGTTATCACAATCAAGCCCTTAATGTTGAGCTCCCCAGTAGACTATTCACTCATCCAAAACTTAATAACATCTCCACATGTAAATGGTGAAGAACATTAAGCTCTGAATAGATTAATTTTCACACACATTATTTGAGCATACAAATTAAATTTATTGAAATTTAAATATATAATAAATGAGCTATTGCAAGGTGTGTCACTTGAGTTGCATAAGTAATCCCTCAACAAGATTGTCTTCCAGAGCCAAACGGAATGAACTCACATTGTCAATCTTAGCACGAACAATTCATTCAGCAATGTCTATTTGCACCTCGACTATTCATGAATATCTACTATCTATGCACCTCGACTATTCCGTTGAATATCTAATATCACCTAGCTTAAAACTTTCTCTAAAACTGTTTGATGCTACACATGGGGTCTGGCCAATTCTCATTTCTGCTCTTTCCTTGTTTCTGTCTACTTTCTTTTTCATCATCTATACCTCATCCTTGCCGCAAAGATCAATGCTCCGCTCTTCTAAAATTCAAGAAAATGCTTACTGTAGATACCTCATTAGTTTGCTGTAGTTACACGAGTACATGGAACATGAGCAGATA</genome_strand>
        <mrna_strand>GGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACGTATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACAAAAAATTATCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238355" ref_strand="+" ref_description="SGN-E238355 [cLED-17-I2]">
      <seq>ggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcagaaagaacaccaaaaacgtatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgtgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactagctttcatcttcccaattttgccaaaagtaaaaatcagagaaatagaaaatgtgtattttttcccttcatattggaacatgcaattttgattatgtttttttgtcctaatttattgtagaacaataatgtcaagagagtaaattttaattcgaaaaagcagagcgattctttctcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60490" stop="58397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60190" g_stop="60163" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58691" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="583" r_length="348" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E238355" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60190" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATATGCATT</genome_strand>
        <mrna_strand>GGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACGTATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622775" ref_strand="+" ref_description="SGN-E622775 [73146]">
      <seq>taatgttattatttctactctttagctaacatacgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcaaaaagagcaccaaaaacgcatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgcgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactaactttcgtcttcccaattttgtcaaaagtaaaaatcagagaaacagaaaatgtgcatttttattcttcatattggatcatgcaattttgattgtgttttttgtcctaatttattatagaacaatgacgaaaagagagtaaattttaattcgaaaaagcagagcgattctttctcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="59988" stop="58397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59688" g_stop="59556" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59038" g_stop="58691" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="479" r_length="347" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E622775" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59688" e_stop="59556"/>
          <exon e_start="59038" e_stop="58691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATATGCATT</genome_strand>
        <mrna_strand>TAATGTTATTATTTCTACTCTTTA-GCTAACATACGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAAAAAGAGCACCAAAAACGCATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGCGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAACTTTCGTCTTCCCAATTTTGTCAAAAGTAAAAATCAGAGAAACAGAAAATGTGCATTTTTATTCTTCATATTGGATCATGCAATTTTGATTGTG-TTTTTTGTCCTAATTTATTATAGAACAATGACGAAAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368713" ref_strand="+" ref_description="SGN-E368713 [TUS-22-D20](-)">
      <seq>aggacttcaaaaaaaatcaaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaaaagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaaaaaagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctttgaaaaaaaaaaagacgggtggttcaagcaatcagcagaaagaaccccaaaaacgtatgccattagcagcaaaaagatccaaggttgcaaaatttaagattgagaaaaaaaaaaaacaggggcgtgctggcaaacaatttcgagggaaaaaagcttggaagtaaagtgaaaactagctttcatcttcccaattttgccaaaagtaaaaatcaaagaaataaaaaatgtgtattttttcccttcatattggaacatgcaattttgattatgtttttttgtcctaatttattgtagaacaataatgtcaaaaaagtaaattttaattcgaaaaaacagagcgattcttttttttcccaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60328" stop="58400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60191" g_stop="60163" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="130" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="238" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58700" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="577" r_length="339" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="618"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E368713" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60191" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTTC-AAAAGAATC-AAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTC</genome_strand>
        <mrna_strand>AGGACTTCAAAAAAAATCAAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAAAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAAAAAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTTTGAAAAAAAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACCCCAAAAACGTATGCCATTAGCAGCAAAAAGATCCAAGGTTGCAAAATTTAAGATTGAGAAAAAAAAAAAACAGGGGCGTGCTGGCAAACAATTTCGAGGGAAAAAAGCTTGGAAGTAAAGTGAAAACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAAAGAAATAAAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAAAAAGTAAATTTTAATTCGAAAAAACAGAGCGATTCTTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236053" ref_strand="+" ref_description="SGN-E236053 [cLED-16-L9]">
      <seq>ggacttcaaaagaatcaaagaactcaaggcgaataacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcagaaagaacaccaaaaacgtatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgtgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactagctttcatcttcccaattttgccaaaagtaaaaatcagagaaatagaaaatgtgtattttttcccttcatattggaacatgcaattttgattatgtttttttgtcctaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60490" stop="58465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60190" g_stop="60163" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58765" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="509" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E236053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60190" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTA</genome_strand>
        <mrna_strand>GGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAATAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACGTATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233350" ref_strand="+" ref_description="SGN-E233350 [cLED-9-O3]">
      <seq>ggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcagaaagaacaccaaaaacgtatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgtgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactagctttcatcttcccaattttgcccaaaggtaaaatcagagaaatagaaaatgtgtattttttcccttcatattggaacatgcaattttgattatgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60490" stop="58476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60190" g_stop="60163" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58776" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="498" r_length="263" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E233350" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60190" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTT</genome_strand>
        <mrna_strand>GGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACGTATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCCAAAGGTAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242221" ref_strand="+" ref_description="SGN-E242221 [cLED-37-K12]">
      <seq>ggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaaagaagaagacgggtggttcaagcaatcagcagaaagaacaccaaaaacgtatgccattagcagcaaagagatccaaggttgcaaaatctaagattgagaaaaagagaaagcaggcgcgtgctggcaaacaatttcgagggagaaaagcttggaagtagagtgaagactagctttcatcttcccaattttgccaaaagtaaaaatcagagaaatagaaaatgtgtattttttcccttcatattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60490" stop="58501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60190" g_stop="60163" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="127" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59556" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="235" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59038" g_stop="58801" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="473" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E242221" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60190" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59556"/>
          <exon e_start="59038" e_stop="58801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAGGTACTTTATTGTTTGCACATGATTTTGTTGCATGAGCTTGGCATTGTATATTTCTAAATTTTTCTTTATTACCCAGTTTTTTCTTACTATTGGCCAAGTCTATTGCCTTTCTTTCTAAGAATGGGGAACTCAGCATTTATTAAGGATATCCCCAAGCACACTTTGCATCTACTTCCATTATGCATTATAAATGTTACAAGATATCTAGAATCTAAAGACATCTTAATTTTCTTTCCATGAGCTATTGTTTTGGAAGATTTTGAATGCCACACTTCTCCCGATATCCCCGAACCAGTCACACAGAACTTCATCTCTTTCCCTTCCCACCCCATTCTCTTTCTCTTTCAAATTTCCTTCTCTTCCTTTCACATATCACATAACTGGCACTTGCTTGAACTAAGGTCCTCATTTCGCCCCAAAAAAGCATGGGTATCTTTAGTAGTTAAAAAGGTTACCCTTCTAATGAAATGCACTTGTGATTAGATGATGTGATAACATCTGCGTTTCAATTTTGCAGACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAA</genome_strand>
        <mrna_strand>GGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACGTATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258618" ref_strand="+" ref_description="SGN-E258618 [cLEG-50-C15]">
      <seq>agtgcatcagctactgaagatgatgagagtgatggtgaagaagagggtattgatggcgatataatgcaggataataatagctgggcttctgaagaggatgatgtggatgaaaaggtctctaaaggaacaaaaaggaaaatatctgatattgatgtaaatgctgctagtaatagccttcgtgctttaaagaaattagcaggggcaaacatggaacctaactccctgaatatggaggatggtattttatctaatgaggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattccggctggtagagaggatagagggagataccaagctaaaactgctctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60744" stop="59264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60444" g_stop="60163" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="381" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59564" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="481" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E258618" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60444" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAA</genome_strand>
        <mrna_strand>AGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCCGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262638" ref_strand="+" ref_description="SGN-E262638 [cLEG-63-H14]">
      <seq>agtgcatcagctactgaagatgatgagagtgatggtgaagaagagggtattgatggcgatataatgcaggataataatagctgggcttctgaagaggatgatgtggatgaaaaggtctctaaaggaacaaaaaggaaaatatctgatattgatgtaaatgctgctagtaatagccttcgtgctttaaagaaattagcaggggcaaacatggaacctaactccctgaatatggaggatggtattttatctaatgaggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgcgagaactgttttagcacaacatggatttaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaacttgaggcgaacatccgaaagaagcttagcaaggaagagagactggcgattattcgggctggtagagaggatagagggagataccaagctaaaactgctctgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60744" stop="59264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60444" g_stop="60163" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59926" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="381" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59663" g_stop="59564" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="481" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E262638" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60444" e_stop="60163"/>
          <exon e_start="60024" e_stop="59926"/>
          <exon e_start="59663" e_stop="59564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAGGTTAGGTGCCTTGCACTTTCATAGCATTATTCTTCTGCAGTCACTATTGTATTTGGAATCATGAATTGGTTCAGAAGAAAATACTTCCCTCATTGTAAAAGAGGGAGAACAAAAAGAAAATGCTTCCCCATGTTAACCTGATCACTGGACACAGTTTTGTCCCTTTTTGTTTGATTTACTGTAGGAGTGGGTGTTTGTTTCTTGTTAATTGCAATCTCTGCCCTAACAGGATGCATCTTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAA</genome_strand>
        <mrna_strand>AGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG......................................................................................................................................................................................................................................................................GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254959" ref_strand="+" ref_description="SGN-E254959 [cLEG-33-H5]">
      <seq>ctgggcttctgaagaggaagatgtggatgaaaaggtctctaaaggaacaaaaaggaaaatatctgatattgatgtaaatgctgctagtaatagccttcgtgctttaaagaaattagcaggggcaaacatggaacctaactccctgaatatggaggaatggtattttatctaatgaggacttcaaaagaatcaaagaactcaaggcgaaaaacgacgccagaactgttttagcacaacatggatttaaagcttcccagctcagaccaaattagtacaaaaagagttgatgctgctaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60664" stop="59629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60364" g_stop="60163" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60024" g_stop="59929" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="300" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E254959" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60364" e_stop="60163"/>
          <exon e_start="60024" e_stop="59929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGG-ATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAGGTATGCTGATTTTGAAGAAACTGAAGCCCACTTGCAATGGATGCTTCATTTATTTTCTTTGACTACACAACTTCTTGTGTCCCGAGCTCTTCCTCCTACAAACGTGTATCTGTAACATTTTCTGATTTTGCTCATCAGGCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTT-AAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTT</genome_strand>
        <mrna_strand>CTGGGCTTCTGAAGAGGAAGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGAATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAG..........................................................................................................................................GCGAAAAACGACGCCAGAACTGTTTTAGCACAACATGGATTTAAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273727" ref_strand="+" ref_description="SGN-E273727 [cLEN-7-O1]">
      <seq>gatgatgatgttaacccagacgaagaggatgccaattgcgaaaaagatggagatgatgcttctgacaatgagtctggtgatgatgaatgtgatagtgacgaagataacaaattgcaagctactgaagaattttcagaagatgatgatgcaattgatagtgcatcagctactgaagatgatgagagtgatggtgaagaagagggtattgatggcgatataatgcaggataataatagctgggcttctgaagaggatgatgtggatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="60900" stop="60033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60600" g_stop="60333" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E273727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60600" e_stop="60333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATGTTAACCCAGACGAAGAGGATGCCAATTGCGAAAAAGATGGAGATGATGCTTCTGACAATGAGTCTGGTGATGATGAATGTGATAGTGACGAAGATAACAAATTGCAAGCTACTGAAGAATTTTCAGAAGATGATGATGCAATTGATAGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAA</genome_strand>
        <mrna_strand>GATGATGATGTTAACCCAGACGAAGAGGATGCCAATTGCGAAAAAGATGGAGATGATGCTTCTGACAATGAGTCTGGTGATGATGAATGTGATAGTGACGAAGATAACAAATTGCAAGCTACTGAAGAATTTTCAGAAGATGATGATGCAATTGATAGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476033" ref_strand="+" ref_description="SGN-E476033 [cSTB-43-I11]">
      <seq>atttggtttattaggaaattctgtgtcttgattcaagattcctttttttttccttctctgtaggagctcccacccttttacttcccttgactagaactcacaaccttagggtcgaggtgaggggtgtttacaatccgaacaagtccctcttgttttttttttccattcaaccactttgaggtatgtgagttttttttttgttggggaaaccaataactccttgttgtgattcaattttgtgacaatgttacaagatgatggttcttcatctgtgacctcatcatcacctattcaaatatttccaatgatgtctgtatcacctaactttggttcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67184" stop="68121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67484" g_stop="67821" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E476033" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67484" e_stop="67821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGTTTATTAGGAAATTCTCTGCCTTGATTCAAGATTCCT-TTTTTTACC-TCTCTGTAGGAGCTCCCACCATTTTATTTCCCTTGACTCGAACTCACAACCTTAGGGTCGAGGTGAGGGGTGTTTACGATCCGAACAAGTCCCTCTTGTTTTTTTTCTTCCAATTGAACCCCTTTGAGGTATGTGAG-TTTTTTTTTGTTGGGAAAACCGATAACTACTTGTTGTGATTCAGTATTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAGTATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAA</genome_strand>
        <mrna_strand>ATTTGGTTTATTAGGAAATTCTGTGTCTTGATTCAAGATTCCTTTTTTTTTCCTTCTCTGTAGGAGCTCCCACCCTTTTACTTCCCTTGACTAGAACTCACAACCTTAGGGTCGAGGTGAGGGGTGTTTACAATCCGAACAAGTCCCTCTTGTTTTTTTT-TTCC-ATTCAACCACTTTGAGGTATGTGAGTTTTTTTTTTGTTGGGGAAACCAATAACTCCTTGTTGTGATTCAATTTTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAATATTTCCAATGATGTCTGTATCACCTAACTTTGGTTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451055" ref_strand="+" ref_description="SGN-E451055 [cSTS-11-I6]">
      <seq>gagaactagtctcgagttttttttttttttttttgttggggaaaccaataactccttgttgtgattcagttttgtgacaatgttacaagatgatggttcttcatctgtgacctcatcatcacctattcaaatatttccaatgatgtctgtatcacctagctttggttcatcaaatcagtggcttaaggagctgaaatctgaagaaagagggttgtatttgatacatcttttgcttgcttgtgctaatcatgttgctgctggtagccttgagaatgctaatatagcacttgaccatatttcccaacttgcatctcctagtggagatactatgcaaaggattgcttcatattttactgaggctttagctgataggattctcaggagttggcctggtctttataaggcgttgcgttcgactaagttatcggttgtctcagaagaaattcttgttaggaagatgtttttcgagatctttccgttcttgaaggtggcgtttgtggtcacaaatcaagctataattgaagctatggaaggtgaaaagatggttcatatttgnggatcttaatgctgctgaacccctgcaatggcgtgcgctgcttcaggacttgagcgcgcgttctgaaagaccgccccatttgcgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67373" stop="68591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67673" g_stop="68291" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="645" r_length="620" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E451055" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67673" e_stop="68291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTGTTGGGAAAACCGATAACTACTTGTTGTGATTCAGTATTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAGTATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTTCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATA-TTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTA</genome_strand>
        <mrna_strand>TTTTTTTTTGTTGGGGAAACCAATAACTCCTTGTTGTGATTCAGTTTTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAATATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTGCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACTATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTCAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCGTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTTGNGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGCTGCTTCAGGACTTGAGCGCGCGTTCTGAAAGACCGCCCCATTTGCGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448179" ref_strand="+" ref_description="SGN-E448179 [cSTS-1-P16]">
      <seq>gagaactagtctcgagttttttttttttttttttgttggggaaaccaataactccttgttgtgattcagttttgtgacaatgttacaagatgatggttcttcatctgtgacctcatcatcacctattcaaatatttccaatgatgtctgtatcacctagctttggttcatcaaatcagtggcttaaggagctgaaatctgaagaaagagggttgtatttgatacatcttttgcttgcttgtgctaatcatgttgctgctggtagccttgagaatgctaatatagcacttgaccatatttcccaacttgcatctcctagtggagatactatgcaaaggattgcttcatattttactgaggctttagctgataggattctcaggagttggcctggtctttataaggcgttgcgttcgactaagttatcggttgtctcagaagaaattcttgttaggaagatgtttttcgagatctttccgttcttgaaggtggcgtttgtggtcacaaatcaagctataattgaagctattggaggtgaaaagatggttcatattgtggatcttaatgctgctgaaccccctgcatggcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67373" stop="68537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67673" g_stop="68237" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="590" r_length="565" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E448179" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67673" e_stop="68237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTGTTGGGAAAACCGATAACTACTTGTTGTGATTCAGTATTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAGTATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTTCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTG</genome_strand>
        <mrna_strand>TTTTTTTTTGTTGGGGAAACCAATAACTCCTTGTTGTGATTCAGTTTTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAATATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTGCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACTATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTCAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCGTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATTGGAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCCTGCATGGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348022" ref_strand="+" ref_description="SGN-E348022 [cTOF-31-M7]">
      <seq>tggagataccatgcaaaggattgcttcatattttactgaggctttagctgataggattctaaggagttggcctggtctttataaggcgttgcgttcgactaagttatcggttgtctcagaagaaattcttgttaggaagatgtttttcgagatctttcctttcttgaaggtggcgtttgtggtcacaaatcaagctataattgaagctatggaaggtgaaaagatggttcatattgtggatcttaatgctgctgaacccctgcaatggcgtgcgttgcttcaggacttgagcgcgcgtcctgaaggaccgccccatctgcgcattactggggttcatcagcaaaaagaggtgttagatcaaatggcacatgtgcttactcaagaagcagaaaaactggatatcccttttcagttcaatcaagtagttagcagattggaaaatcttgatgttgagaaacttcgcgtgaaaacgggggaggctcttgcgattagttcaattatgcaattgcacacccttctagcccatgataatgacaagaagtcccctttgccttttaagcattcaaatggtgttaacttaaacagggcactagtcaaccaaaatactttagggggaatttcttgaaaaagatatggctaatggttgcagtccaagcaatgacaccgcttcttcatccccgctatgttcaactggttcaacaaagatggatagtttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67666" stop="68983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67966" g_stop="68683" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E348022" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67966" e_stop="68683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTA-GGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTC</genome_strand>
        <mrna_strand>TGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278988" ref_strand="+" ref_description="SGN-E278988 [cLER-2-P17]">
      <seq>gcaaaggattgcttcatattttactgaggctttagctgataggattctaaggagttggcctggtctttataaggcgttgcgttcgactaagttatcggttgtctcagaagaaattcttgttaggaagatgtttttcgagatctttcctttcttgaaggtggcgtttgtggtcacaaatcaagctataattgaagctatggaaggtgaaaagatggttcatattgtggatcttaatgctgctgaacccctgcaatggcgtgcgttgcttcaggacttgagcgcgcgtcctgaaggaccgccccatctgcgcattactggggttcatcagcaaaaagaggtgttagatcaaatggcacatgtgcttactcaagaagcagaaaaactggatatcccttttcagttcaatcaagtagttagcagattggaaaatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67678" stop="68712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67978" g_stop="68412" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E278988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67978" e_stop="68412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGA</genome_strand>
        <mrna_strand>GCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729003" ref_strand="+" ref_description="SGN-E729003 [LA19CF08]">
      <seq>gtgaaaagatggtcatattgtggatcttaatgctgctgaacccctgcaatggcgtgcgttgcttcaggacttgagcgcgcgtcctgaaggaccgccccatctgcgcattactggggttcatcagcaaaaagaggtgttagatcaaatggcacatgtgcttactcaagaagcagaaaaactggatatcccttttcagttcaatcaagtagttagcagattggaaaatcttgatgttgagaaacttcgcgtgaaaacgggggaggctcttgcgattagttcaattatgcaattgcacacccttctagcccatgataatgacaagaagtcccctttgccttttaagcattcaaatggtgttaacttaaacagggcactagtcaaccaaaatactttaggggaatttcttgaaaaagatatggctaatggttgcagtccaagcaatgacaccgcttcttcatccccgctatgttcaactggttcaacaaagatggatagtttcctcaatgcttcgtggggtttatcaccaaaagttatggtggtaacagaacaagatgctaaccataatgggacaactcttatggagaggctatcagagtcgccacatttctatgctgcattataagattgccttgaatcgacgctgccaagaacatcattagagagattaaaggcggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="67881" stop="69158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68181" g_stop="68858" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E729003" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68181" e_stop="68858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAA</genome_strand>
        <mrna_strand>GTGAAAAGATGG-TCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTCGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGCCACATTTCTATGCTGCATTATAAGATTGCCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGCGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266500" ref_strand="+" ref_description="SGN-E266500 [cLEI-5-C2]">
      <seq>ttcagttcaatcaagtagttagcagattggaaaatcttgatgttgagaaacttcgcgtgaaaacgggggaggctcttgcgattagttcaattatgcaattgcacacccttctagcccatgataatgacaagaagtcccctttgccttttaagcattcaaatggtgttaacttaaacagggcactagtcaaccaaaatactttaggggaatttcttgaaaaagatatggctaatggttgcagtccaagcaatgacaccgcttcttcatccccgctatgttcaactggttcaacaaagatggatagtttcctcaatgctttgtggggtttatcaccaaaagttatggtggtaacagaacaagatgctaaccataatgggacaactcttatggagaggctatcagagtcgttacatttttatgctgcattatttgattgtcttgaatcgacgctgccaagaacatcattagagagattaaaggtggaaaagatgttattaggtgaagagattagaaacattatagcatgtgaagggatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68073" stop="69209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68373" g_stop="68909" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E266500" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68373" e_stop="68909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCG</genome_strand>
        <mrna_strand>TTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694460" ref_strand="+" ref_description="SGN-E694460 [LH_Ea03P18](-)">
      <seq>cttcttcatccccgctatgttcaactggttcaacaaagatggatagtttcctcaatgctttgttgggtttatcaccaaaagttatggtgttaacagaacaagatgctaaccataatgggacaactcttatggagaggctatcagagtcgttacatttttatgctgcattatttgattgtcttgaatcgacactgccaagaacatcattagagagattaaaggtggaaaagatgttattaggtgaggagattagaaacattatagcatgtgaagggatcgaacgaaaggagaggcatgaaaagctcgaaaagtggttccaaagattcgaaacatctggttttgggaatgtgcctttgagttattatgctatgttgcaggcaagaaggttgttgcagagttatagttgtgaaggatacaagatcaaagaagataatggttgtgtggtgatatgctggcaggatcgcccacttttttcagtgtcgtcttggcgatgtaggaagtgagactaaacttagttttcattgtaatgttttagatttgtatcttccttttgttgttgttaacataatgtgtagaactccagttggtgaaacagctattgacatgtttgagacattttgtcatcttttttgatctcatgtgataagcttctctctagtgtttagatttccattttgatataaagcaataaagctgacgttctcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68331" stop="81372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68631" g_stop="69345" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69346" i_stop="71378" i_length="2033">
            <donor d_prob="0.820" d_score="0.78"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71379" g_stop="71386" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="724" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E694460" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68631" e_stop="69345"/>
          <exon e_start="71379" e_stop="71386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTG-TAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAAGTTTCTGGTATGAAGTCATATTTTCTTCTTGTGTTTGTTGTTTGTACATTGGTTGCATCCATCGACAAACACCTAAAGTTGACACCATTTCTCAGTTGAGACTTGTACTGTTTAAAAACATGTAGTGGGGTCCAAATTTGCCATTTTGACACTTTTTGTTGATTTGGCAAGTTGCATGTTTTTCACCTCTTTCCGTCATTGAAATTCAAAAAGTTCTCTTTCTTTGTTTAGCTTATTAAGTTCTTATTTGATGTGTACACACAATATTCATCTTTAGTGTAACCAATATTCTAAATGATGAATTAGTCATTTGATATCCATTTCCTTATGTGACAAAATGAACATGTCACCTTTTGAGATTAAGTTAAAAGGTATTATCGCGAAGCTTTTTTATTTGTAGACCTTGTTCTTTCAAATAAAATTACCTTTTTGGGTGTCCTTACATTACATGTGTGAGACTGTTGTTTCATTACGTGCTACGTATCTAGTAACTCTATCCATCGGGATGATATTTTCAAAGGTTCTACTAGGCATAGGCCTTAATCATCAAATGTCTAAATGGCCACCCCGATTTTGAGATTTCTTCAACTAAATTGGGCCTGTCTGGTTTTTGTTACTGGATGGGTCTGGGCCCTTTTATGGGATTGGGCCTAATTGCTTACCCAGTTGACATGTTTAACAATTATATACTTTATAGGCAACGTCAGTAGCAAAATATAGAAGATTTAAAATATGACTCGAAGCGTTGTTCTCAAAACGCTCTAGTGCGAGGGATTGGGATATGAGTTCAAAATCAACACTAAAGTGGACAGATGTGCGAATGAGCCCAAAACAATTTGTTATCGATTCAGATGTTCATTTGAAACAAACTGTAATTCATATGTCCAAATAAAATTTACTGATAAATTTGAGAGGTTCATCAAATGTATTTCTTTTATTATCTATTATCTATTACAAAACTATAGTATAATGCCATAATTGGGAAAGTGAAGTTTGTTAAATGAGTGTCTCAAATTAGCCATTCATATCACATATATCTATCATTCTCTTTACTATTGACACACATAAAGAGGAAACAAAACAAAAACACCCTCAACCTTATGGTGCAAATAGTAATTATTTTTCCATTTGTTAGATAAAATATGCCATGTGAGTATTGTACTACATGGAGTAATGTTTGCAATCTTGATATGGCAAATGAGAAATTATTCAATTTGATAATTTTATTTTTTATTGTTTTGGTAGAAAAAAAAATGTTGTGAATATAACAAATTAACAAATATATAGAAAATTTATCTAATAATTGATTTTACAAAATATTGAAAAACGAATAGTTTTATTTGATATTATATTAGTAAAAGCAATATAATACAATATGACATATCATGTAACTACATATAATATAATTATTCAAACAAGTGGTTAATGGCGTTTTTATATACTATCTTATTAAATCTTTCTAGACTACGTAAGTATGTAAAAATATCTTATCAATGCGATGTAAAAGAAAAGCTTACGTAAATAATTAGTATCTTATAATATTTATATTATCAGACAATTACTTTTCACATGTGATACACATGCATTCAGTAAAAATAATAAAAATATGTATAGTCTAATCCGAGCACAAATGATAATAAAAAAGAGTTATTCCAGTACATGCTTAAATATTTGTTCTTTACATTGATTTTTAGAACTTAGCATATGATTTTTGTATTTAAGAATTAATATCAAAACATAGGTATACAACTATTCTATTACGTTTAAAAGGAAAATTGTATATAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACATTAGCTAAAATTTGCCAGCGTCTCTCTCCCAAAAATCTCGCTCGCCGCTTTATACACAGAAGTGTATAATTTTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAGTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAG</genome_strand>
        <mrna_strand>CTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTTGGGTTTATCACCAAAAGTTATGGTGTTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACACTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAGGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGAAACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTATAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGTGTGGTGATATGCTGGCAGGATCGCCCACTTTTTTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTTAACATAATGTGTAGAACTCCAGTTGGTGAAACAGCTATTGACATGTTTGAGACATTTTGTCATCTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATAAAGCAATAAAGCTGACGTTCTCTTAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690620" ref_strand="+" ref_description="SGN-E690620 [LH_Ea03P18]">
      <seq>cttcttcatccccgctatgttcaactggttcaacaaagatggatagtttcctcaatgctttgttgggtttatcaccaaaagttatggtgttaacagaacaagatgctaaccataatgggacaactcttatggagaggctatcagagtcgttacatttttatgctgcattatttgattgtcttgaatcgacactgccaagaacatcattagagagattaaaggtggaaaagatgttattaggtgaggagattagaaacattatagcatgtgaagggatcgaacgaaaggagaggcatgaaaagctcgaaaagtggttccaaagattcgaaacatctggttttgggaatgtgcctttgagttattatgctatgttgcaggcaagaaggttgttgcagagttatagttgtgaaggatacaagatcaaagaagataatggttgtgtggtgatatgctggcaggatcgcccacttttctcagtgtcgtcttggcgatgtaggaagtgagactaaacttagttttcattgtaatgttttagatttgtatcttccttttgttgttgttaacataatgtgtagaactccagttggtgaaacagctattgacatgtttgagacattttgtcatcttttttgatctcatgtgataagcttctctctagtgtttagatttccattttgatatggatcaataaagctgacgttctcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68331" stop="69638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68631" g_stop="69338" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E690620" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68631" e_stop="69338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTG-TAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA</genome_strand>
        <mrna_strand>CTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTTGGGTTTATCACCAAAAGTTATGGTGTTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACACTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAGGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGAAACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTATAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGTGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTTAACATAATGTGTAGAACTCCAGTTGGTGAAACAGCTATTGACATGTTTGAGACATTTTGTCATCTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGACGTTCTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241960" ref_strand="+" ref_description="SGN-E241960 [cLED-27-I13]">
      <seq>tggatagtttcctcaatgctttgtggggtttatcaccaaaagttatggtggtaacagaacaagatgctaaccataatgggacaactcttatggagaggctatcagagtcgttacatttttatgctgcattatttgattgtcttgaatcgacgctgccaagaacatcattagagagattaaaggtggaaaagatgttattaggtgaagagattagaaacattatagcatgtgaagggatcgaacgaaaggagaggcatgaaaagctcgaaaagtggttccaaagattcgacacatctggttttgggaatgtgcctttgagttattatgctatgttgcaggcaagaaggttgttgcagagttacagttgtgaaggatacaagatcaaagaagataatggttgcgtggtgatatgctggcaggatcgcccacttttctcagtgtcgtcttggcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68370" stop="69424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68670" g_stop="69124" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E241960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68670" e_stop="69124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGT</genome_strand>
        <mrna_strand>TGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226593" ref_strand="+" ref_description="SGN-E226593 [cLEL-26-M12](-)">
      <seq>cagatgctgcattatttgattgtcttgaatcgacgctgccaagaacatcattagagagattaaaggtggaaaagatgttattaggtgaagagattagaaacattatagcatgtgaagggatcgaacgaaaggagaggcatgaaaagctcgaaaagtggttccaaagattcgacacatctggttttgggaatgtgcctttgagttattatgctatgttgcaggcaagaaggttgttgcagagttacagttgtgaaggatacaagatcaaagaagataatggttgcgtggtgatatgctggcaggatcgcccacttttctcagtgtcgtcttggcgatgtaggaagtgagactaaacttagttttcattgtaatgttttagatttgtatcttccttttgttgttgtaacataatgtgtagaactccagttggtgaaactgctattgacatgtttgagacattttgtcaacttttttgatctcatgtgataagcttctctctagtgtttagatttccattttgatatggatcaataaagctgatgttctcttaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68490" stop="81382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68787" g_stop="69338" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69339" i_stop="71378" i_length="2040">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71379" g_stop="71403" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="577" r_length="25" r_score="0.520"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E226593" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68787" e_stop="69338"/>
          <exon e_start="71379" e_stop="71403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAAGTTTCTGGTATGAAGTCATATTTTCTTCTTGTGTTTGTTGTTTGTACATTGGTTGCATCCATCGACAAACACCTAAAGTTGACACCATTTCTCAGTTGAGACTTGTACTGTTTAAAAACATGTAGTGGGGTCCAAATTTGCCATTTTGACACTTTTTGTTGATTTGGCAAGTTGCATGTTTTTCACCTCTTTCCGTCATTGAAATTCAAAAAGTTCTCTTTCTTTGTTTAGCTTATTAAGTTCTTATTTGATGTGTACACACAATATTCATCTTTAGTGTAACCAATATTCTAAATGATGAATTAGTCATTTGATATCCATTTCCTTATGTGACAAAATGAACATGTCACCTTTTGAGATTAAGTTAAAAGGTATTATCGCGAAGCTTTTTTATTTGTAGACCTTGTTCTTTCAAATAAAATTACCTTTTTGGGTGTCCTTACATTACATGTGTGAGACTGTTGTTTCATTACGTGCTACGTATCTAGTAACTCTATCCATCGGGATGATATTTTCAAAGGTTCTACTAGGCATAGGCCTTAATCATCAAATGTCTAAATGGCCACCCCGATTTTGAGATTTCTTCAACTAAATTGGGCCTGTCTGGTTTTTGTTACTGGATGGGTCTGGGCCCTTTTATGGGATTGGGCCTAATTGCTTACCCAGTTGACATGTTTAACAATTATATACTTTATAGGCAACGTCAGTAGCAAAATATAGAAGATTTAAAATATGACTCGAAGCGTTGTTCTCAAAACGCTCTAGTGCGAGGGATTGGGATATGAGTTCAAAATCAACACTAAAGTGGACAGATGTGCGAATGAGCCCAAAACAATTTGTTATCGATTCAGATGTTCATTTGAAACAAACTGTAATTCATATGTCCAAATAAAATTTACTGATAAATTTGAGAGGTTCATCAAATGTATTTCTTTTATTATCTATTATCTATTACAAAACTATAGTATAATGCCATAATTGGGAAAGTGAAGTTTGTTAAATGAGTGTCTCAAATTAGCCATTCATATCACATATATCTATCATTCTCTTTACTATTGACACACATAAAGAGGAAACAAAACAAAAACACCCTCAACCTTATGGTGCAAATAGTAATTATTTTTCCATTTGTTAGATAAAATATGCCATGTGAGTATTGTACTACATGGAGTAATGTTTGCAATCTTGATATGGCAAATGAGAAATTATTCAATTTGATAATTTTATTTTTTATTGTTTTGGTAGAAAAAAAAATGTTGTGAATATAACAAATTAACAAATATATAGAAAATTTATCTAATAATTGATTTTACAAAATATTGAAAAACGAATAGTTTTATTTGATATTATATTAGTAAAAGCAATATAATACAATATGACATATCATGTAACTACATATAATATAATTATTCAAACAAGTGGTTAATGGCGTTTTTATATACTATCTTATTAAATCTTTCTAGACTACGTAAGTATGTAAAAATATCTTATCAATGCGATGTAAAAGAAAAGCTTACGTAAATAATTAGTATCTTATAATATTTATATTATCAGACAATTACTTTTCACATGTGATACACATGCATTCAGTAAAAATAATAAAAATATGTATAGTCTAATCCGAGCACAAATGATAATAAAAAAGAGTTATTCCAGTACATGCTTAAATATTTGTTCTTTACATTGATTTTTAGAACTTAGCATATGATTTTTGTATTTAAGAATTAATATCAAAACATAGGTATACAACTATTCTATTACGTTTAAAAGGAAAATTGTATATAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACATTAGCTAAAATTTGCCAGCGTCTCTCTCCCAAAAATCTCGCTCGCCGCTTTATACACAGAAGTGTATAATTTTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAGTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGACCAACGAATTATACAA</genome_strand>
        <mrna_strand>CAGATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226934" ref_strand="+" ref_description="SGN-E226934 [cLEL-26-M12](-)">
      <seq>gatgttattaggtgaagagattagaaacattatagcatgtgaagggatcgaacgaaaggagaggcatgaaaagctcgaaaagtggttccaaagattcgacacatctggttttgggaatgtgcctttgagttattatgctatgttgcaggcaagaaggttgttgcagagttacagttgtgaaggatacaagatcaaagaagataatggttgcgtggtgatatgctggcaggatcgcccacttttctcagtgtcgtcttggcgatgtaggaagtgagactaaacttagttttcattgtaatgttttagatttgtatcttccttttgttgttgtaacataatgtgtagaactccagttggtgaaactgctattgacatgtttgagacattttgtcaacttttttgatctcatgtgataagcttctctctagtgtttagatttccattttgatatggatcaataaagctgatgttctcttaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68560" stop="81382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68860" g_stop="69338" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69339" i_stop="71378" i_length="2040">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71379" g_stop="71403" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="504" r_length="25" r_score="0.520"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E226934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68860" e_stop="69338"/>
          <exon e_start="71379" e_stop="71403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAAGTTTCTGGTATGAAGTCATATTTTCTTCTTGTGTTTGTTGTTTGTACATTGGTTGCATCCATCGACAAACACCTAAAGTTGACACCATTTCTCAGTTGAGACTTGTACTGTTTAAAAACATGTAGTGGGGTCCAAATTTGCCATTTTGACACTTTTTGTTGATTTGGCAAGTTGCATGTTTTTCACCTCTTTCCGTCATTGAAATTCAAAAAGTTCTCTTTCTTTGTTTAGCTTATTAAGTTCTTATTTGATGTGTACACACAATATTCATCTTTAGTGTAACCAATATTCTAAATGATGAATTAGTCATTTGATATCCATTTCCTTATGTGACAAAATGAACATGTCACCTTTTGAGATTAAGTTAAAAGGTATTATCGCGAAGCTTTTTTATTTGTAGACCTTGTTCTTTCAAATAAAATTACCTTTTTGGGTGTCCTTACATTACATGTGTGAGACTGTTGTTTCATTACGTGCTACGTATCTAGTAACTCTATCCATCGGGATGATATTTTCAAAGGTTCTACTAGGCATAGGCCTTAATCATCAAATGTCTAAATGGCCACCCCGATTTTGAGATTTCTTCAACTAAATTGGGCCTGTCTGGTTTTTGTTACTGGATGGGTCTGGGCCCTTTTATGGGATTGGGCCTAATTGCTTACCCAGTTGACATGTTTAACAATTATATACTTTATAGGCAACGTCAGTAGCAAAATATAGAAGATTTAAAATATGACTCGAAGCGTTGTTCTCAAAACGCTCTAGTGCGAGGGATTGGGATATGAGTTCAAAATCAACACTAAAGTGGACAGATGTGCGAATGAGCCCAAAACAATTTGTTATCGATTCAGATGTTCATTTGAAACAAACTGTAATTCATATGTCCAAATAAAATTTACTGATAAATTTGAGAGGTTCATCAAATGTATTTCTTTTATTATCTATTATCTATTACAAAACTATAGTATAATGCCATAATTGGGAAAGTGAAGTTTGTTAAATGAGTGTCTCAAATTAGCCATTCATATCACATATATCTATCATTCTCTTTACTATTGACACACATAAAGAGGAAACAAAACAAAAACACCCTCAACCTTATGGTGCAAATAGTAATTATTTTTCCATTTGTTAGATAAAATATGCCATGTGAGTATTGTACTACATGGAGTAATGTTTGCAATCTTGATATGGCAAATGAGAAATTATTCAATTTGATAATTTTATTTTTTATTGTTTTGGTAGAAAAAAAAATGTTGTGAATATAACAAATTAACAAATATATAGAAAATTTATCTAATAATTGATTTTACAAAATATTGAAAAACGAATAGTTTTATTTGATATTATATTAGTAAAAGCAATATAATACAATATGACATATCATGTAACTACATATAATATAATTATTCAAACAAGTGGTTAATGGCGTTTTTATATACTATCTTATTAAATCTTTCTAGACTACGTAAGTATGTAAAAATATCTTATCAATGCGATGTAAAAGAAAAGCTTACGTAAATAATTAGTATCTTATAATATTTATATTATCAGACAATTACTTTTCACATGTGATACACATGCATTCAGTAAAAATAATAAAAATATGTATAGTCTAATCCGAGCACAAATGATAATAAAAAAGAGTTATTCCAGTACATGCTTAAATATTTGTTCTTTACATTGATTTTTAGAACTTAGCATATGATTTTTGTATTTAAGAATTAATATCAAAACATAGGTATACAACTATTCTATTACGTTTAAAAGGAAAATTGTATATAATAGCAAACTAATAACCTAAATTAAATGGAATAGCTAGGGTTTGATTTAATTGTGCTCCATAACAAACATTAGCTAAAATTTGCCAGCGTCTCTCTCCCAAAAATCTCGCTCGCCGCTTTATACACAGAAGTGTATAATTTTGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCGTGTTATACACTTAGTTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAGACCAACGAATTATACAA</genome_strand>
        <mrna_strand>GATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404117" ref_strand="+" ref_description="SGN-E404117 [PPC-12-P13]">
      <seq>tttttttaagagaacatcatctttattgatccatatcaaaatggaaatctaaaaactagagagaaactgatcacatgagatcaaaaaagatgacaaaatgtctcaaacatgtcaatagcagtttcactaactggagttctacacattatgttacaacaacaaaaggaagagataaatctaaaacattacaatgaaaactaagtttagtctcacttcctacatcgccaagacgacactgagaaaagtgctcgatcttgccagcatatcaccacgcaaccattctcttctttgatcttgtatccttcacaactgtaactctgcaacaaccttcttgcctgcaacatagcataataactcaaaggcacattcccaaaaccagatgtgtcgaatctttggaaccacttttcgagcttttcatgcctctcctttcgctcgatcccttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="69638" stop="68596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69342" g_stop="68896" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E404117" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69342" e_stop="68896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTAAGAGAACATCAGCTTTATTGATCCATATCAAAATGGAAATCTAAACACTAGAGAGAAGCTTATCACATGAGATCAAAAAAGTTGACAAAATGTCTCAAACATGTCAATAGCAGTTTCACCAACTGGAGTTCTACACATTATGTTACAACAACAAAAGGAAGATACAAATCTAAAACATTACAATGAAAACTAAGTTTAGTCTCACTTCCTACATCGCCAAGACGACACTGAGAAAAGTGGGCGATCCTGCCAGCATATCACCACGCAACCATTATCTTCTTTGATCTTGTATCCTTCACAACTGTAACTCTGCAACAACCTTCTTGCCTGCAACATAGCATAATAACTCAAAGGCACATTCCCAAAACCAGATGTGTCGAATCTTTGGAACCACTTTTCGAGCTTTTCATGCCTCTCCTTTCGTTCGATCCCTTCACAT</genome_strand>
        <mrna_strand>TTTTTTTAAGAGAACATCATCTTTATTGATCCATATCAAAATGGAAATCTAAAAACTAGAGAGAAACTGATCACATGAGATCAAAAAAGATGACAAAATGTCTCAAACATGTCAATAGCAGTTTCACTAACTGGAGTTCTACACATTATGTTACAACAACAAAAGGAAGAGATAAATCTAAAACATTACAATGAAAACTAAGTTTAGTCTCACTTCCTACATCGCCAAGACGACACTGAGAAAAGTGCTCGATCTTGCCAGCATATCACCACGCAACCATTCTCTTCTTTGATCTTGTATCCTTCACAACTGTAACTCTGCAACAACCTTCTTGCCTGCAACATAGCATAATAACTCAAAGGCACATTCCCAAAACCAGATGTGTCGAATCTTTGGAACCACTTTTCGAGCTTTTCATGCCTCTCCTTTCGCTCGATCCCTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227827" ref_strand="+" ref_description="SGN-E227827 [cLEL-39-K23](-)">
      <seq>atcaaaaaagataatggttgcgtggtgatatgctggcaggatcgcccacttttctcagtgtcgtcttggcgatgtaggaagtgagactaaacttagttttcattgtaatgttttagatttgtatcttccttttgttgttgtaacataatgtgtagaactccagttggtgaaactgctattgacatgtttgagacattttgtcaacttttttgatctcatgtgataagcttctctctagtgtttagatttccattttgatatggatcaataaagctgatgttctcttaaaacaaaaaaaaaaaaactcgagactaggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="68750" stop="69638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69050" g_stop="69338" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="290" polyA_stop="304"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E227827" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69050" e_stop="69338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA</genome_strand>
        <mrna_strand>ATCAAAAAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714208" ref_strand="+" ref_description="SGN-E714208 [FB10DC06]">
      <seq>caatgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggtacacgccttcctgaacccaacttgtcatcagggattcttggcgcagctcctttagatagcaaacagtcaggtagtggtaggccttacagaacacatcaatctggcctgcctcagagaccaggtttctcgtccggtcccagatagcttcttctactggacattaactgccatggtgcccctgcaggaaagccattcaattttgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaatttttgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttagaagccagaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacagatttcttccccttacagataaaatcccagtcttttttttttggctgttttgaagtatataatggatagtgaaagagcatatttctttaggttatatgtgacagtttgtcacagtctgtatgtattatgctttttgcgaagtgtacattatcaaattttgcttattcaataactcaacaacattattctttactccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85131" stop="81155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84831" g_stop="84084" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84083" i_stop="81482" i_length="2602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81481" g_stop="81459" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="771" r_length="23" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E714208" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84831" e_stop="84084"/>
          <exon e_start="81481" e_stop="81459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTGACGAGAGCTCACATTCAATTTCATCACTTCTGTGTTAGTTTATATTGTTACTGATATTAACATTGCTATTGATTATTTTTTCAAGTATAAATCAACTCAGCAGAATTGATTCTCAGTATTGTGTTGATCAAGTCACGAACAACTATCATTGAATGGAAAATTGATTAGAATAACTTTGGTTTATTGATTTCAAGCCTTTAGATTATATAGTATCTATGGAGGATTTACAAAATCAATTTAAACCCTTGTAATAAAAAATAAGTATATTAAAATATAAATTAAAATTATAAATAAATAGTTTTCTAATGTAAATTTGAAGATAACAATAAAGATATTTATCTTCTTCTATTAAAATTAATATATTTTCATAGAAGGTCTAAATATAAAGAATTTATAGCATAAATAAAGAATATAAGTGTTTGATTTTAAAATATGTATAAAAAAAAAAGGGTCAAATTACAATTTACAAGGACCTTTAATTAGCACTTAATGATAGAAAATTAGAGAAAATAAAAACCCCAAAAAGGAAATTTTTTTTAATAAGAATACTGTTTGGAAGTATTAAATTATAATTTACAAAGTTTTAGTAGAAGTGGGGTCTTTTTTCCCTTTTTCTCCGCTAAAAGAATTTAGTTGAAGAACAGCAATTTATCTGCCATTGTTATTCATGCTGCAGATTTTTTCTTCTTTATCTGCGATGGTGAGAAGTCAATTTATGCCTTTTGTTTGTTTTCTGCTTTGATTTCAGTTTTCTTTTGTTGTTGTATGCTTCAAGTTTCAATCTTTTTTAGTTTATGTTTCAGATAGATTTTCAGTTTTTTTTTGCTGTATATGTTTCAGTTTTGGTTCATGGAATTGTTCAAGTTTTTTTGAGTGATATATATTATATCTGTAGACTGTATACATGTATTTGGGTTTGTGGGTGTTGAAAATCTTGGATTTTGATGGAATCATTGAGGCGAATAGTCTAGAAGCCAATCAAGTTATGCCCTTCCTTTGTCTTCAGCTTTGATTTCACTCTTTTTCTTTGCTATATGTTCCAAATTTCAATCTTTTTTGCTATATGTTTCAAGATTCGCTCTTTTTTGTTACATGTTTCAGCTAAATTTTCACTCTTTTTGCTATATGTTTCAATTGCCATTCATGGTGAGTTAATCATATTAAGTGATACACATATATTATATGTATTTTGGTTTTCTGCGTATTGAAAATCTTGGTTTTTAACGGAATCATTGAGGTGAACAACCCGTCTAAAGCTTAGCAGCCAATCAAGTTATGCCCTTTCTTTGTCTTAGCTTTGATTTTGCTCTTTTTTGCTATATGCTTCAGCTACATTTTCACTCTTTTTGGCTGTATGTTTTAATTTTCATTCACAGCGAGTTAATTCATGGAGTTGTATTCAAAGCTGTCTCTTTTCCCCTTCACAATGATCTATCAGTTGGATTTTATGGATCTTTTAACAACTTTTAAATTCTTATAATTTTAGATGCGCGTGGATGTAAAAATTCAATTATTTTAGTTATGGTTAATATTTTTGGTACAGAACATACATTGGCACAATTACGAAGTTGCTCCTTTGGTTACATGCAGGTTTTGTGTTCAATGCGTGGAAACAGCCTCTTTGCATAAATCCAAAGGAAAGTTGCTGATAATATATGCCCACCCTTCTAACCTGGGGAGTATTTCAATTCATGTACGGGGTAGGCTTTCCTTTTTTTTTTTTGTTTTTTTTTTGGTACAAATACATTTTGACAAGTTACATTGAGTATATTCCTTTTCTTTTGCCTCTAATCATTTTTTCAGAAAATGTCTTGATAATGGACTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTTTTTTTAATAAAAAAATTGGGGCCCCCCCTTTTTCTTTTTTTAAAAAAAAAAAAAAAAAACAATATTTTTTTTTGCAAATTTTTTTCCACCTTTTTTCCCAAAACAAAATTTTTTCCCAAAAACAATTCCCAAATTTTTTTTCCCCCTCTCCCCCCAAATCCCAGTTTCTTAAATAAAAATTTTTTTTTTTATACCCCCTTTTTTAAGAAAAAAAAAAATTTTTTTATAATTTTTCCCCCAAAGGGGGGGTTTCGGGGGGGATTTAAAATTTCCAAAAAAATTTTGGGAAAAATTTTTTCCTTTTTTTTTTTGAGGGCTTTTTTGCCAAAAAAAAATTTAAAATCCTTTTTCCCTGAAAAAAAAAAAAAAAAACCCCCTAAAACCCAAAGTTCAATTTCAATTTTTTTTTTTTTTCCCCAAAAAAAAAAAAAAAAAAACAATCCCTGGCCGGCGGGGGGGGAAAAAATTAAATTCCCCCAATTTTTTACCCCTTTTTTTCCAATTAAAACCCAAAAAAAATTTTTTTTTTAAAAAAAGGCCGGAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAATGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713941" ref_strand="+" ref_description="SGN-E713941 [FB10AD02]">
      <seq>caacgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggtacacgccttcctgaacccaacttgtcatcagggattcttggcgcagctcctttagatagcaaacagtcaggtagtggtaggccttacagaacacatcaatctggcctgcctcagagaccaggtttctcgtccggtcccagatagcttcttctactggacattaactgccatggtgcccctgcaggaaagccattcaattttgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaatttttgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttagaagccagaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacagatttcttccccttacagataaaatcccagtcttttttttttggctgttttgaagtatataatggatagtgaaagagcatatttctttaggttatatgtgacagtttgtcacagtctgtatgtattatgctttttgcgaagtgtacattatcaaattttgcttattcaataactcaacaacattattctttactccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85131" stop="81155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84831" g_stop="84084" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84083" i_stop="81482" i_length="2602">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81481" g_stop="81459" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="771" r_length="23" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E713941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84831" e_stop="84084"/>
          <exon e_start="81481" e_stop="81459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTACTCCACTTGACTACTTCTCTTCTCCATTGATTAGTTTTCTTGCTTTCTTCATGCTTTTTACCACATTTTTATCTTGCATTACCATAAGGTACCTGTGACGAGAGCTCACATTCAATTTCATCACTTCTGTGTTAGTTTATATTGTTACTGATATTAACATTGCTATTGATTATTTTTTCAAGTATAAATCAACTCAGCAGAATTGATTCTCAGTATTGTGTTGATCAAGTCACGAACAACTATCATTGAATGGAAAATTGATTAGAATAACTTTGGTTTATTGATTTCAAGCCTTTAGATTATATAGTATCTATGGAGGATTTACAAAATCAATTTAAACCCTTGTAATAAAAAATAAGTATATTAAAATATAAATTAAAATTATAAATAAATAGTTTTCTAATGTAAATTTGAAGATAACAATAAAGATATTTATCTTCTTCTATTAAAATTAATATATTTTCATAGAAGGTCTAAATATAAAGAATTTATAGCATAAATAAAGAATATAAGTGTTTGATTTTAAAATATGTATAAAAAAAAAAGGGTCAAATTACAATTTACAAGGACCTTTAATTAGCACTTAATGATAGAAAATTAGAGAAAATAAAAACCCCAAAAAGGAAATTTTTTTTAATAAGAATACTGTTTGGAAGTATTAAATTATAATTTACAAAGTTTTAGTAGAAGTGGGGTCTTTTTTCCCTTTTTCTCCGCTAAAAGAATTTAGTTGAAGAACAGCAATTTATCTGCCATTGTTATTCATGCTGCAGATTTTTTCTTCTTTATCTGCGATGGTGAGAAGTCAATTTATGCCTTTTGTTTGTTTTCTGCTTTGATTTCAGTTTTCTTTTGTTGTTGTATGCTTCAAGTTTCAATCTTTTTTAGTTTATGTTTCAGATAGATTTTCAGTTTTTTTTTGCTGTATATGTTTCAGTTTTGGTTCATGGAATTGTTCAAGTTTTTTTGAGTGATATATATTATATCTGTAGACTGTATACATGTATTTGGGTTTGTGGGTGTTGAAAATCTTGGATTTTGATGGAATCATTGAGGCGAATAGTCTAGAAGCCAATCAAGTTATGCCCTTCCTTTGTCTTCAGCTTTGATTTCACTCTTTTTCTTTGCTATATGTTCCAAATTTCAATCTTTTTTGCTATATGTTTCAAGATTCGCTCTTTTTTGTTACATGTTTCAGCTAAATTTTCACTCTTTTTGCTATATGTTTCAATTGCCATTCATGGTGAGTTAATCATATTAAGTGATACACATATATTATATGTATTTTGGTTTTCTGCGTATTGAAAATCTTGGTTTTTAACGGAATCATTGAGGTGAACAACCCGTCTAAAGCTTAGCAGCCAATCAAGTTATGCCCTTTCTTTGTCTTAGCTTTGATTTTGCTCTTTTTTGCTATATGCTTCAGCTACATTTTCACTCTTTTTGGCTGTATGTTTTAATTTTCATTCACAGCGAGTTAATTCATGGAGTTGTATTCAAAGCTGTCTCTTTTCCCCTTCACAATGATCTATCAGTTGGATTTTATGGATCTTTTAACAACTTTTAAATTCTTATAATTTTAGATGCGCGTGGATGTAAAAATTCAATTATTTTAGTTATGGTTAATATTTTTGGTACAGAACATACATTGGCACAATTACGAAGTTGCTCCTTTGGTTACATGCAGGTTTTGTGTTCAATGCGTGGAAACAGCCTCTTTGCATAAATCCAAAGGAAAGTTGCTGATAATATATGCCCACCCTTCTAACCTGGGGAGTATTTCAATTCATGTACGGGGTAGGCTTTCCTTTTTTTTTTTTGTTTTTTTTTTGGTACAAATACATTTTGACAAGTTACATTGAGTATATTCCTTTTCTTTTGCCTCTAATCATTTTTTCAGAAAATGTCTTGATAATGGACTGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTTTTTTTAATAAAAAAATTGGGGCCCCCCCTTTTTCTTTTTTTAAAAAAAAAAAAAAAAAACAATATTTTTTTTTGCAAATTTTTTTCCACCTTTTTTCCCAAAACAAAATTTTTTCCCAAAAACAATTCCCAAATTTTTTTTCCCCCTCTCCCCCCAAATCCCAGTTTCTTAAATAAAAATTTTTTTTTTTATACCCCCTTTTTTAAGAAAAAAAAAAATTTTTTTATAATTTTTCCCCCAAAGGGGGGGTTTCGGGGGGGATTTAAAATTTCCAAAAAAATTTTGGGAAAAATTTTTTCCTTTTTTTTTTTGAGGGCTTTTTTGCCAAAAAAAAATTTAAAATCCTTTTTCCCTGAAAAAAAAAAAAAAAAACCCCCTAAAACCCAAAGTTCAATTTCAATTTTTTTTTTTTTTCCCCAAAAAAAAAAAAAAAAAAACAATCCCTGGCCGGCGGGGGGGGAAAAAATTAAATTCCCCCAATTTTTTACCCCTTTTTTTCCAATTAAAACCCAAAAAAAATTTTTTTTTTAAAAAAAGGCCGGAAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>CAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238118" ref_strand="+" ref_description="SGN-E238118 [cLED-22-O2]">
      <seq>tttagatagcaaacagtcaggtagtggtaggccttacagaacacatcaatctggcctgcctcagagaccaggtttctcgtccggtcccagatagcttcttctactggacattaactgccatggtgcccctgcaggaaagccattcaattttgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaatttttgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttagaagccaaaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacagatttcttccccttacagataaaatcccagtcttttttttttggctgttttgaaatatataatggatagtgaaagagcatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="84953" stop="83894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84653" g_stop="84194" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E238118" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84653" e_stop="84194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATT</genome_strand>
        <mrna_strand>TTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAAAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAATATATAATGGATAGTGAAAGAGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244564" ref_strand="+" ref_description="SGN-E244564 [cLED-38-D15]">
      <seq>tttagatcgcatacagtctggtagtggtaggccttacagaacacatcaatctggcctgcctcagagaccaggtttctcgtccggtcccagatagcttcttctactggacattaactgccatggtgcccctgcaggaaagccattcaattatgtctcagtggcttttgctgcttcgatctatattctttacctggaattgcgctggtctatgggaatacaaattattgctcattccttgaccacatacctgctattttgaagccaactgtaaaccaaaggactgcatcatttataaaccagaaagagtgaacttggaggcgcctttcctagatccaggagatgaagattttgttctattggaatttctagggcacacacatttcttgcccttacagataaaatgccagtctttgttttttggctggtttgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="84953" stop="83921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84653" g_stop="84221" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E244564" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84653" e_stop="84221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGT</genome_strand>
        <mrna_strand>TTTAGATCGCATACAGTCTGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTATGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTATTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTATAAACCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACACATTTCTTGCCCTTACAGATAAAATGCCAGTCTTTGTTTTTTGGCTGGTTTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247465" ref_strand="+" ref_description="SGN-E247465 [cLEG-3-E23]">
      <seq>ttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggtacacgccttcctgaacccaacttgtcatcagggattcttggcgcagctcctttagatagcaaacagtcaggtagtggtaggccttacagaacacatcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85701" stop="84302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85401" g_stop="85358" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="138" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84602" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="518" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E247465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85401" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCT</genome_strand>
        <mrna_strand>TTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212468" ref_strand="+" ref_description="SGN-E212468 [cLEC-74-A9]">
      <seq>aaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggtacacgccttcctgaacccaacttgtcatcagggattcttggcgcagctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85718" stop="84353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85418" g_stop="85358" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="155" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84653" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="484" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E212468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85418" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCT</genome_strand>
        <mrna_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273586" ref_strand="+" ref_description="SGN-E273586 [cLEN-6-N14]">
      <seq>aggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggtacacgccttcctgaacccaacttgtcatcagggattcttggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85581" stop="84360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85365" g_stop="85358" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="102" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84660" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="424" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E273586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85365" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGC</genome_strand>
        <mrna_strand>AGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276194" ref_strand="+" ref_description="SGN-E276194 [cLEN-21-M12]">
      <seq>aaagggtaaacaaagtaaattaagctcatctggaaatgctaaaatgggtagaggcagagctgcaaaaggtcaaaaaaaggttgagccgttgataaaagaggaaggtgaaatgtcagataatgaagaagtttatgagcagtttaaagaggtgaaatggatggaatggtgtgaagatgtgatggtgtatgaggaaaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtacctcgaggttttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagccccaacatcaaagagctttgactaatggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85910" stop="84403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85610" g_stop="85358" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="347" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84703" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="626" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E276194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85610" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTA</genome_strand>
        <mrna_strand>AAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212510" ref_strand="+" ref_description="SGN-E212510 [cLEC-74-A10]">
      <seq>aaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtacctcgagggtttgatgcagccaaatttgaagcatggaaacgaaggaaaagagctgaagctgatgttcattcgcaagttcagcccccacatcaaagagctttgactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85718" stop="84406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85418" g_stop="85358" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="155" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84706" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="431" r_length="276" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E212510" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85418" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATG</genome_strand>
        <mrna_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGGTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCCACATCAAAGAGCTTTGACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290459" ref_strand="+" ref_description="SGN-E290459 [cLES-20-J2]">
      <seq>taaagaggtgaaatggatggaatggtgtgaagatgtgatggtgtatgaggaaaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85769" stop="84514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85469" g_stop="85358" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="206" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84814" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="374" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E290459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85469" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTAC</genome_strand>
        <mrna_strand>TAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373860" ref_strand="+" ref_description="SGN-E373860 [TUS-31-G22]">
      <seq>taaagaggtgaaatggatggaatggtgtgaagatgtgatggtgtatgaggaaaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85769" stop="84514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85469" g_stop="85358" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="206" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84814" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="374" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E373860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85469" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTAC</genome_strand>
        <mrna_strand>TAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373859" ref_strand="+" ref_description="SGN-E373859 [TUS-31-G22](-)">
      <seq>ttaaagaggtgaaatggatggaatggtgtgaagatgtgatggtgtatgaggaaaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggagcaacatgtagaaggacgggtaggaccgtcgcagtttaatggttctgcacctgcgcatccaacgccaggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85770" stop="84517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85470" g_stop="85358" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="207" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84817" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="372" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E373859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85470" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTG</genome_strand>
        <mrna_strand>TTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203596" ref_strand="+" ref_description="SGN-E203596 [cLEC-15-O23]">
      <seq>aaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcaggattgatcaaatagtttttgaatatgagaacgaatcacataagcaagaaaggatgacagtccgtttatggaattatgtctcaacattttcaaatttgtctggcgagaagcttcgtcagatttattctaaacttaagcaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="85718" stop="84590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85418" g_stop="85358" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="155" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.493" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84981" g_stop="84890" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="247" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E203596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85418" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAG</genome_strand>
        <mrna_strand>AAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212593" ref_strand="+" ref_description="SGN-E212593 [cLEC-74-F2]">
      <seq>gtgctttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgacgccagactgcttcttggaattcattatcacggatttggcaactgggaaaagatacgattagatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcatgagactttcttgccaagagctccacaattgaaggagagagcttctcaacttctgcaaatggaagttgcagctgttggtgggaagaacactagtttaaaagtgggtcgtaaaacttccaacaagcagaaggaaagccttcccagcacaacagcatctcttggaaagggtaaacaaagtaaattaagctcatctggaaatgctaaaatgggtagaggcagagctgcaaaaggtcaaaaaaaggttgagccgttgataaaagaggaaggtgaaatgtcagataatgaagaagtttatgagcagtttaaagaggtgaaatggatggaatggtgtgaagatgtgatggtgtatgaggaaaagacgcttaagcgtcttcaaagattgcagactactagtgctgatctccccaaggacaaggtgttggccaaaatacggaactacttgcagcttcttggtcgcangattgatcaaatagtttttgaatatgagaacgaaatcacatagcaagaaaggatgacagtccgtttatggaattatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87794" stop="84654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87494" g_stop="87438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87333" g_stop="87152" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="239" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85711" g_stop="85358" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="593" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85273" g_stop="85180" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="687" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.493" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84981" g_stop="84954" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="715" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E212593" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87494" e_stop="87438"/>
          <exon e_start="87333" e_stop="87152"/>
          <exon e_start="85711" e_stop="85358"/>
          <exon e_start="85273" e_stop="85180"/>
          <exon e_start="84981" e_stop="84954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGAGTAAGTTGAAGCCCTTTTTTATTGTTTGACTCTTGTTCTTCCCATTTTCCTTCCCCTTTCATCTTGGAAAATTCTGTGGTTGCCTTAACTCCTCCATTTGGTAGAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATGGTATAGAATACTCACTCCCGAGTCTCTACATTCACTAAAATTGCTTGTTAATTCCATATTTCCATTATTATGTCATCATTTTCACTTCAATTGCTGTCGAGATTGTGTAGTTTGCTAGTGAGACGGATCAGACAAAAAATATATTTTGCTACCGAGAATCAGCACTTTATTTTTTTTAAAAAATTTAAAAGGTGAGTTATTTATGGTGTGAACCAGCAAAGCTGGAGAAGGCTATAAAAAATTACTTTGCAGAGAACAGTAAGAACCAAGAAAATCTATCTTGGAAGAAGGATCTAAAACATAATCTTTGGCCATGTTACACATAAAAATATGCAAAAGAGCACATATTTTACTCGAGATTAATAGCCTACTTGGATTGGCTTATTTTAGGTGCTTTTAAGCAGTTTGTAGTGTTTGGGTAAAATTAAAAGAAATGCTTATAAGCGTTTGTTTTCAAGTCAAAATAATAAAAATTAGCCAAAAGTCATATGTTAGAATTTCTAACTTATGGCTTTTGACTTATAAGCCATAAGTCAAAAGCCATTTCAAACTGACTCTTAAGTCTTTCTACCTGATAATTCAAAATCCATTTCAAACAGACTCTTCAGAATTTCTACCTGAAAAGTGGAAAGGCAGGAGGATCTGCATGGTTCATGTTCATTGTGCAGTGTTTCCAAGTCCTCCACATTAGCTTTATTGGGCCATTCAAAGTTTAAAGTTTGGTTTGCATACTAAAATTCAAATTCAAAAAAAATGTTTGGCTTACATACGTTCTTTACCTCCCCATTATTACCCTTTTTTTTTTTTGATAATTGAGAAAATTTCCCAAGAGTTAGTGGTGCACAGTTTGAAAGTCGGTAGATAGCCGGCCTGTTCCTCTGCCTTCCCTTAAATACTAATATTCTGTATGCGGCAGAATATAATTTCGTGACACGCACATAAACCATACCTGACACTTTGCGCTCTTATCACTCGGACCAAAGCCGTCGGTTCACCTCCTCTAGTTGTACTAAACAACACAAAGGCGAAGGATGAATTCTTTTCTTGGTCACAAAGAGATTGACCCGCCCCATTTACACTTTCTCTTCTCTTGCCCTCAAGAAAGAAAATAGCGATGCCATATTAGTATGTTCTGATCTCATTGCATGGGGAGTCATTGACATAAATAGTGAACTCCATCTGCTTCTTCACAATGGTCAACTGTGCTTCCTTCTGACTTTTGATACCTGCTTTACCAGCAACTAGCAAGTGCAGTGATACAGTTGCCTCTTCTTGAAATTCCTTTGTGTTTGTGGTTGTACTTTTTTCCTCTATAGTTGCAGATGTTCTTCCAGCTGTAGGAAGTGGAAGTTCACTAATCTGTTTATGTTGTGTGTGGATTCTAAGAACTTAAACTTTTCAGTTACTTGTATACCTTACCCACATTAGTCTTGCTACCAGGAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAGGTTAATATTCTAAATTCAGTTCTCTCTCTCCCTCTCTATTTCTATCTCTCTTTTCAATGAGTCTGAATTTTTTTACGGCACCAGGTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACG-AATCACATAAGCAAGAAAGTAAGCCTCTTGTCTTATAATCATTTGGCTTAAGCTAATAGTTTATAACTTACTGCTCCTTCTCGAGCCCCTCTCTACCCGAAGTGGAGGGTGTGGGTGCATGAGTCCTTTTCTCTTAGTTATAGCTATGCTTTCTCTCTTAATTTCTCTCCTCCTTAATGCATTAGTTAACAGGGCTCATTTAAAATTTGGCTACAGGGATGACAGTCCGTTTATGGAATTATGT</genome_strand>
        <mrna_strand>GTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA........................................................................................................AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG....................................................................................GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCANGATTGATCAAATAGTTTTTGAATATGAGAACGAAATCACAT-AGCAAGAAA......................................................................................................................................................................................................GGATGACAGTCCGTTTATGGAATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609160" ref_strand="+" ref_description="SGN-E609160 [25163]">
      <seq>gaggaacttcaactcctagcaaagcgcatttctcgatatgcagatcctgtctcgcagttccgtgctttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgacgccagactgcttcttggaattcattatcatggatttggcaactgggaaaagatacggttagatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcacgagactttcttgccaagagctccgcagttgaaggagagagcttctcaacttctgcaaatggaagttgcagctgttggtgggaagaacactagtttaaaagtgggccgtaagacttccaacaagcagaaggaaagccttcccagcaccacagcacctcttggaaagggtaaacaaagtaaattaagctcatctggaaatgctaaaatgggtagaggcagagctgctaaaggtcaaaagaaggttgaaccgttggtcaaagaggaaggtgaaatgtcagataatgaggaagtttatgagcagtttaaagaggtgaaatggatggaatggtgtgaagatgtgatgatgtatgaggaaaagacgcttaagcgtcttcaaagattgcaaactactagtggtgatctccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87855" stop="85065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87555" g_stop="87438" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87333" g_stop="87152" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="300" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85711" g_stop="85365" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="647" r_length="347" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E609160" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87555" e_stop="87438"/>
          <exon e_start="87333" e_stop="87152"/>
          <exon e_start="85711" e_stop="85365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGAGTAAGTTGAAGCCCTTTTTTATTGTTTGACTCTTGTTCTTCCCATTTTCCTTCCCCTTTCATCTTGGAAAATTCTGTGGTTGCCTTAACTCCTCCATTTGGTAGAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATGGTATAGAATACTCACTCCCGAGTCTCTACATTCACTAAAATTGCTTGTTAATTCCATATTTCCATTATTATGTCATCATTTTCACTTCAATTGCTGTCGAGATTGTGTAGTTTGCTAGTGAGACGGATCAGACAAAAAATATATTTTGCTACCGAGAATCAGCACTTTATTTTTTTTAAAAAATTTAAAAGGTGAGTTATTTATGGTGTGAACCAGCAAAGCTGGAGAAGGCTATAAAAAATTACTTTGCAGAGAACAGTAAGAACCAAGAAAATCTATCTTGGAAGAAGGATCTAAAACATAATCTTTGGCCATGTTACACATAAAAATATGCAAAAGAGCACATATTTTACTCGAGATTAATAGCCTACTTGGATTGGCTTATTTTAGGTGCTTTTAAGCAGTTTGTAGTGTTTGGGTAAAATTAAAAGAAATGCTTATAAGCGTTTGTTTTCAAGTCAAAATAATAAAAATTAGCCAAAAGTCATATGTTAGAATTTCTAACTTATGGCTTTTGACTTATAAGCCATAAGTCAAAAGCCATTTCAAACTGACTCTTAAGTCTTTCTACCTGATAATTCAAAATCCATTTCAAACAGACTCTTCAGAATTTCTACCTGAAAAGTGGAAAGGCAGGAGGATCTGCATGGTTCATGTTCATTGTGCAGTGTTTCCAAGTCCTCCACATTAGCTTTATTGGGCCATTCAAAGTTTAAAGTTTGGTTTGCATACTAAAATTCAAATTCAAAAAAAATGTTTGGCTTACATACGTTCTTTACCTCCCCATTATTACCCTTTTTTTTTTTTGATAATTGAGAAAATTTCCCAAGAGTTAGTGGTGCACAGTTTGAAAGTCGGTAGATAGCCGGCCTGTTCCTCTGCCTTCCCTTAAATACTAATATTCTGTATGCGGCAGAATATAATTTCGTGACACGCACATAAACCATACCTGACACTTTGCGCTCTTATCACTCGGACCAAAGCCGTCGGTTCACCTCCTCTAGTTGTACTAAACAACACAAAGGCGAAGGATGAATTCTTTTCTTGGTCACAAAGAGATTGACCCGCCCCATTTACACTTTCTCTTCTCTTGCCCTCAAGAAAGAAAATAGCGATGCCATATTAGTATGTTCTGATCTCATTGCATGGGGAGTCATTGACATAAATAGTGAACTCCATCTGCTTCTTCACAATGGTCAACTGTGCTTCCTTCTGACTTTTGATACCTGCTTTACCAGCAACTAGCAAGTGCAGTGATACAGTTGCCTCTTCTTGAAATTCCTTTGTGTTTGTGGTTGTACTTTTTTCCTCTATAGTTGCAGATGTTCTTCCAGCTGTAGGAAGTGGAAGTTCACTAATCTGTTTATGTTGTGTGTGGATTCTAAGAACTTAAACTTTTCAGTTACTTGTATACCTTACCCACATTAGTCTTGCTACCAGGAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAA</genome_strand>
        <mrna_strand>GAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCGCAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA........................................................................................................AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCATGGATTTGGCAACTGGGAAAAGATACGGTTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCACGAGACTTTCTTGCCAAGAGCTCCGCAGTTGAAGGAGAGAGCTTCTCAACTTCTGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGCCGTAAGACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACCACAGCACCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCTAAAGGTCAAAAGAAGGTTGAACCGTTGGTCAAAGAGGAAGGTGAAATGTCAGATAATGAGGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGATGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAAACTACTAGTGGTGATCTCCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476106" ref_strand="+" ref_description="SGN-E476106 [cSTB-43-G24]">
      <seq>gtgctttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgacgccagactgcttcttggaattcattatcacggatttggcaactgggaaaagatacggttagatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcatgagactttcttgccaagagctccgcagttgaaggagagagcttctcaacttctgcaaatggaagttgcagctgttggtgggaagaacactagtttaaaagtgggccgtaagacttccaacaagcagaaggaaagccttcccagcaccacagcacctcttggaaagggtaaacaaagtaaattaagctcatctggaaatgctaaaatgggtagaggcagagctgctaaaggtcaaaaaaaggttgaaccgttggtcaaagaggaaggtgaaatgtcagataatgaggaagtttatgagcagtttaaagaggtgaaatggatggaatggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="87794" stop="85141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87494" g_stop="87438" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87333" g_stop="87152" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="239" r_length="182" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85711" g_stop="85441" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="510" r_length="271" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E476106" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87494" e_stop="87438"/>
          <exon e_start="87333" e_stop="87152"/>
          <exon e_start="85711" e_stop="85441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGAGTAAGTTGAAGCCCTTTTTTATTGTTTGACTCTTGTTCTTCCCATTTTCCTTCCCCTTTCATCTTGGAAAATTCTGTGGTTGCCTTAACTCCTCCATTTGGTAGAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATGGTATAGAATACTCACTCCCGAGTCTCTACATTCACTAAAATTGCTTGTTAATTCCATATTTCCATTATTATGTCATCATTTTCACTTCAATTGCTGTCGAGATTGTGTAGTTTGCTAGTGAGACGGATCAGACAAAAAATATATTTTGCTACCGAGAATCAGCACTTTATTTTTTTTAAAAAATTTAAAAGGTGAGTTATTTATGGTGTGAACCAGCAAAGCTGGAGAAGGCTATAAAAAATTACTTTGCAGAGAACAGTAAGAACCAAGAAAATCTATCTTGGAAGAAGGATCTAAAACATAATCTTTGGCCATGTTACACATAAAAATATGCAAAAGAGCACATATTTTACTCGAGATTAATAGCCTACTTGGATTGGCTTATTTTAGGTGCTTTTAAGCAGTTTGTAGTGTTTGGGTAAAATTAAAAGAAATGCTTATAAGCGTTTGTTTTCAAGTCAAAATAATAAAAATTAGCCAAAAGTCATATGTTAGAATTTCTAACTTATGGCTTTTGACTTATAAGCCATAAGTCAAAAGCCATTTCAAACTGACTCTTAAGTCTTTCTACCTGATAATTCAAAATCCATTTCAAACAGACTCTTCAGAATTTCTACCTGAAAAGTGGAAAGGCAGGAGGATCTGCATGGTTCATGTTCATTGTGCAGTGTTTCCAAGTCCTCCACATTAGCTTTATTGGGCCATTCAAAGTTTAAAGTTTGGTTTGCATACTAAAATTCAAATTCAAAAAAAATGTTTGGCTTACATACGTTCTTTACCTCCCCATTATTACCCTTTTTTTTTTTTGATAATTGAGAAAATTTCCCAAGAGTTAGTGGTGCACAGTTTGAAAGTCGGTAGATAGCCGGCCTGTTCCTCTGCCTTCCCTTAAATACTAATATTCTGTATGCGGCAGAATATAATTTCGTGACACGCACATAAACCATACCTGACACTTTGCGCTCTTATCACTCGGACCAAAGCCGTCGGTTCACCTCCTCTAGTTGTACTAAACAACACAAAGGCGAAGGATGAATTCTTTTCTTGGTCACAAAGAGATTGACCCGCCCCATTTACACTTTCTCTTCTCTTGCCCTCAAGAAAGAAAATAGCGATGCCATATTAGTATGTTCTGATCTCATTGCATGGGGAGTCATTGACATAAATAGTGAACTCCATCTGCTTCTTCACAATGGTCAACTGTGCTTCCTTCTGACTTTTGATACCTGCTTTACCAGCAACTAGCAAGTGCAGTGATACAGTTGCCTCTTCTTGAAATTCCTTTGTGTTTGTGGTTGTACTTTTTTCCTCTATAGTTGCAGATGTTCTTCCAGCTGTAGGAAGTGGAAGTTCACTAATCTGTTTATGTTGTGTGTGGATTCTAAGAACTTAAACTTTTCAGTTACTTGTATACCTTACCCACATTAGTCTTGCTACCAGGAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTG</genome_strand>
        <mrna_strand>GTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA........................................................................................................AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGGTTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCGCAGTTGAAGGAGAGAGCTTCTCAACTTCTGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGCCGTAAGACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACCACAGCACCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCTAAAGGTCAAAAAAAGGTTGAACCGTTGGTCAAAGAGGAAGGTGAAATGTCAGATAATGAGGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736168" ref_strand="+" ref_description="SGN-E736168 [LC04CD12]">
      <seq>gatgctcaggaaaggttcccaaagcgtcgcaagggagattttagctgcacacttccggcaattgatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgccacacgtttttctcgtgaggtcaagaagtttgggaatgatagccaaattgacttaatatcatcagaggttggtggggcagttgaagctgcaccaactgaagctcaagttgagctttttgactcattgattgatggctgtagagaagcagttaaaggtgaagttgttgatccaaagggacctcttttagatttttttggtgttcctgtgaaggctgatgaactattggcccgtgttgaggaacttcaactcctagcaaagcgcatttctcgatatgcagatcctgtctcacagttccgtgctttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgacgccagactgcttcttggaattcattatcacggatttggcaactgggaaaagatacgattagatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcatgagactttcttgccaagagctccacaattgaaggagagagcttctcaacttctgcaaatggaagttgcagctgttggtgggaagaacactagtttaaaagtgggtcgtaaaacttccaacaagcagaaggaaagccttcccagcacaacagcatctcttggaaagggtaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="88545" stop="85297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88245" g_stop="88105" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87854" g_stop="87699" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="297" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87615" g_stop="87438" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="475" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87333" g_stop="87152" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="657" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85711" g_stop="85597" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="772" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E736168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88245" e_stop="88105"/>
          <exon e_start="87854" e_stop="87699"/>
          <exon e_start="87615" e_stop="87438"/>
          <exon e_start="87333" e_stop="87152"/>
          <exon e_start="85711" e_stop="85597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTAGGGCTAGTTAATTATGTACATGAGTTTATTTTGGCTCTTGTTCTACTTATAAAATGCATTTGTTGGAATAAACAGTTCCTTTGTTGCTTCAGTTGTGTGATTCTATTTTCTTTCCATCCATATGTATTTTATTCGTGGTAACATCTTGTCTTTTTCTTTTCGTCAAAAAAACGTCTTGTCTTTGACCAAATTATTTGAATGTGTTGATATCAAAATCATTAATCTGTTAATTTCTCTCTAATTTTAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAGGTTTGTACATTGGTTCATAATGTATTTTTAAAGATTGGGGGATGACACACTTGGGCTGACATTTTGTGCGTTTTCACCTTCAGGGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGAGTAAGTTGAAGCCCTTTTTTATTGTTTGACTCTTGTTCTTCCCATTTTCCTTCCCCTTTCATCTTGGAAAATTCTGTGGTTGCCTTAACTCCTCCATTTGGTAGAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATGGTATAGAATACTCACTCCCGAGTCTCTACATTCACTAAAATTGCTTGTTAATTCCATATTTCCATTATTATGTCATCATTTTCACTTCAATTGCTGTCGAGATTGTGTAGTTTGCTAGTGAGACGGATCAGACAAAAAATATATTTTGCTACCGAGAATCAGCACTTTATTTTTTTTAAAAAATTTAAAAGGTGAGTTATTTATGGTGTGAACCAGCAAAGCTGGAGAAGGCTATAAAAAATTACTTTGCAGAGAACAGTAAGAACCAAGAAAATCTATCTTGGAAGAAGGATCTAAAACATAATCTTTGGCCATGTTACACATAAAAATATGCAAAAGAGCACATATTTTACTCGAGATTAATAGCCTACTTGGATTGGCTTATTTTAGGTGCTTTTAAGCAGTTTGTAGTGTTTGGGTAAAATTAAAAGAAATGCTTATAAGCGTTTGTTTTCAAGTCAAAATAATAAAAATTAGCCAAAAGTCATATGTTAGAATTTCTAACTTATGGCTTTTGACTTATAAGCCATAAGTCAAAAGCCATTTCAAACTGACTCTTAAGTCTTTCTACCTGATAATTCAAAATCCATTTCAAACAGACTCTTCAGAATTTCTACCTGAAAAGTGGAAAGGCAGGAGGATCTGCATGGTTCATGTTCATTGTGCAGTGTTTCCAAGTCCTCCACATTAGCTTTATTGGGCCATTCAAAGTTTAAAGTTTGGTTTGCATACTAAAATTCAAATTCAAAAAAAATGTTTGGCTTACATACGTTCTTTACCTCCCCATTATTACCCTTTTTTTTTTTTGATAATTGAGAAAATTTCCCAAGAGTTAGTGGTGCACAGTTTGAAAGTCGGTAGATAGCCGGCCTGTTCCTCTGCCTTCCCTTAAATACTAATATTCTGTATGCGGCAGAATATAATTTCGTGACACGCACATAAACCATACCTGACACTTTGCGCTCTTATCACTCGGACCAAAGCCGTCGGTTCACCTCCTCTAGTTGTACTAAACAACACAAAGGCGAAGGATGAATTCTTTTCTTGGTCACAAAGAGATTGACCCGCCCCATTTACACTTTCTCTTCTCTTGCCCTCAAGAAAGAAAATAGCGATGCCATATTAGTATGTTCTGATCTCATTGCATGGGGAGTCATTGACATAAATAGTGAACTCCATCTGCTTCTTCACAATGGTCAACTGTGCTTCCTTCTGACTTTTGATACCTGCTTTACCAGCAACTAGCAAGTGCAGTGATACAGTTGCCTCTTCTTGAAATTCCTTTGTGTTTGTGGTTGTACTTTTTTCCTCTATAGTTGCAGATGTTCTTCCAGCTGTAGGAAGTGGAAGTTCACTAATCTGTTTATGTTGTGTGTGGATTCTAAGAACTTAAACTTTTCAGTTACTTGTATACCTTACCCACATTAGTCTTGCTACCAGGAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAA</genome_strand>
        <mrna_strand>GATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG..........................................................................................................................................................................................................................................................GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAG...................................................................................GGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA........................................................................................................AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461762" ref_strand="+" ref_description="SGN-E461762 [cPRO-9-D1]">
      <seq>agcaattgatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgccacacgtttttctcgtgaggtcaagaagtttgggaatgatagccaaattgacttaatatcatcagaggttggtggggcagttgaagcggcgccaactgaagctcaagttgagctttttgactcattaattgatggctgtagagaagcagttaaaggtgaagttgttgacccaaagggacctctcttagatttttttggtgttcctgtgaaggctgatgaattattgggccgtgttgaggaacttcaactcctagcaaagcgcatttctcgatatgcagatcctgtctcgcagttccgtgctttggcttatctaaagcctgcaacttggtctaaaggttgtggctggaaccagaaggatgacgccagactgcttcttggaattcattatcacggatttggcaactgggaaaagatacggttagatgaaaaacttggcctcatgaagaagattgctccagtggaattacaacatcatgagactttcttgccaagagctccgcagttgaaagagagagcttctcaacttctgcaaatggaaattgcagctgttggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="88488" stop="85390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88189" g_stop="88105" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87854" g_stop="87699" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="241" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.781" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87615" g_stop="87438" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="419" r_length="178" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87333" g_stop="87152" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="601" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85711" g_stop="85690" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="623" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E461762" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88189" e_stop="88105"/>
          <exon e_start="87854" e_stop="87699"/>
          <exon e_start="87615" e_stop="87438"/>
          <exon e_start="87333" e_stop="87152"/>
          <exon e_start="85711" e_stop="85690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTAGGGCTAGTTAATTATGTACATGAGTTTATTTTGGCTCTTGTTCTACTTATAAAATGCATTTGTTGGAATAAACAGTTCCTTTGTTGCTTCAGTTGTGTGATTCTATTTTCTTTCCATCCATATGTATTTTATTCGTGGTAACATCTTGTCTTTTTCTTTTCGTCAAAAAAACGTCTTGTCTTTGACCAAATTATTTGAATGTGTTGATATCAAAATCATTAATCTGTTAATTTCTCTCTAATTTTAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAGGTTTGTACATTGGTTCATAATGTATTTTTAAAGATTGGGGGATGACACACTTGGGCTGACATTTTGTGCGTTTTCACCTTCAGGGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGAGTAAGTTGAAGCCCTTTTTTATTGTTTGACTCTTGTTCTTCCCATTTTCCTTCCCCTTTCATCTTGGAAAATTCTGTGGTTGCCTTAACTCCTCCATTTGGTAGAGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATGGTATAGAATACTCACTCCCGAGTCTCTACATTCACTAAAATTGCTTGTTAATTCCATATTTCCATTATTATGTCATCATTTTCACTTCAATTGCTGTCGAGATTGTGTAGTTTGCTAGTGAGACGGATCAGACAAAAAATATATTTTGCTACCGAGAATCAGCACTTTATTTTTTTTAAAAAATTTAAAAGGTGAGTTATTTATGGTGTGAACCAGCAAAGCTGGAGAAGGCTATAAAAAATTACTTTGCAGAGAACAGTAAGAACCAAGAAAATCTATCTTGGAAGAAGGATCTAAAACATAATCTTTGGCCATGTTACACATAAAAATATGCAAAAGAGCACATATTTTACTCGAGATTAATAGCCTACTTGGATTGGCTTATTTTAGGTGCTTTTAAGCAGTTTGTAGTGTTTGGGTAAAATTAAAAGAAATGCTTATAAGCGTTTGTTTTCAAGTCAAAATAATAAAAATTAGCCAAAAGTCATATGTTAGAATTTCTAACTTATGGCTTTTGACTTATAAGCCATAAGTCAAAAGCCATTTCAAACTGACTCTTAAGTCTTTCTACCTGATAATTCAAAATCCATTTCAAACAGACTCTTCAGAATTTCTACCTGAAAAGTGGAAAGGCAGGAGGATCTGCATGGTTCATGTTCATTGTGCAGTGTTTCCAAGTCCTCCACATTAGCTTTATTGGGCCATTCAAAGTTTAAAGTTTGGTTTGCATACTAAAATTCAAATTCAAAAAAAATGTTTGGCTTACATACGTTCTTTACCTCCCCATTATTACCCTTTTTTTTTTTTGATAATTGAGAAAATTTCCCAAGAGTTAGTGGTGCACAGTTTGAAAGTCGGTAGATAGCCGGCCTGTTCCTCTGCCTTCCCTTAAATACTAATATTCTGTATGCGGCAGAATATAATTTCGTGACACGCACATAAACCATACCTGACACTTTGCGCTCTTATCACTCGGACCAAAGCCGTCGGTTCACCTCCTCTAGTTGTACTAAACAACACAAAGGCGAAGGATGAATTCTTTTCTTGGTCACAAAGAGATTGACCCGCCCCATTTACACTTTCTCTTCTCTTGCCCTCAAGAAAGAAAATAGCGATGCCATATTAGTATGTTCTGATCTCATTGCATGGGGAGTCATTGACATAAATAGTGAACTCCATCTGCTTCTTCACAATGGTCAACTGTGCTTCCTTCTGACTTTTGATACCTGCTTTACCAGCAACTAGCAAGTGCAGTGATACAGTTGCCTCTTCTTGAAATTCCTTTGTGTTTGTGGTTGTACTTTTTTCCTCTATAGTTGCAGATGTTCTTCCAGCTGTAGGAAGTGGAAGTTCACTAATCTGTTTATGTTGTGTGTGGATTCTAAGAACTTAAACTTTTCAGTTACTTGTATACCTTACCCACATTAGTCTTGCTACCAGGAAGTTGCAGCTGTTGGTGGGA</genome_strand>
        <mrna_strand>AGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG..........................................................................................................................................................................................................................................................GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCGGCGCCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTAATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGACCCAAAG...................................................................................GGACCTCTCTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAATTATTGGGCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCGCAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA........................................................................................................AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGGTTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCGCAGTTGAAAGAGAGAGCTTCTCAACTTCTGCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTGCAGCTGTTGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367027" ref_strand="+" ref_description="SGN-E367027 [cLPT-6-D10]">
      <seq>ccgctggtggttactaataaaaggaagaagggtggtgatgctcaggaaaggttcccaaagcgtcgcaagggagattttagctgcacacttccggcaattgatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgccacacgtttttctcgtgaggtcaagaagtttgggaatgatagccaaattgacttaatatcatcagaggttggtggggcagttgaagctgcaccaactgaagctcaagttgagctttttgactcattgattgatggctgtagagaagcagttaaaggtgaagttgttgatccaaagggacctcttttagatttttttggtgttcccgtgaaggctgatgaactattgggccgtgttgaggaacttcaactcctagcaaagcgcatttctcgatatgcggatcctgtctcacagttccgtgctttggcttatctaaagcctgcaacttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="88581" stop="87162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88281" g_stop="88105" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87854" g_stop="87699" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="333" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87615" g_stop="87462" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="487" r_length="154" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E367027" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88281" e_stop="88105"/>
          <exon e_start="87854" e_stop="87699"/>
          <exon e_start="87615" e_stop="87462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTAGGGCTAGTTAATTATGTACATGAGTTTATTTTGGCTCTTGTTCTACTTATAAAATGCATTTGTTGGAATAAACAGTTCCTTTGTTGCTTCAGTTGTGTGATTCTATTTTCTTTCCATCCATATGTATTTTATTCGTGGTAACATCTTGTCTTTTTCTTTTCGTCAAAAAAACGTCTTGTCTTTGACCAAATTATTTGAATGTGTTGATATCAAAATCATTAATCTGTTAATTTCTCTCTAATTTTAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAGGTTTGTACATTGGTTCATAATGTATTTTTAAAGATTGGGGGATGACACACTTGGGCTGACATTTTGTGCGTTTTCACCTTCAGGGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGT</genome_strand>
        <mrna_strand>CCGCTGGTGGTTACTAATAAAAGGAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG..........................................................................................................................................................................................................................................................GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAG...................................................................................GGACCTCTTTTAGATTTTTTTGGTGTTCCCGTGAAGGCTGATGAACTATTGGGCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCGGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272833" ref_strand="+" ref_description="SGN-E272833 [cLEM-25-O19]">
      <seq>tgcttttaaggttgccaatttctgtggtgctgaagatgatgcaactttttggagtcgatggataaagccagaagcaactgcacacgctgaagacgctttggctcctcgagctgctcgaaataaaaagagttatgcagaagctagcccgctggtggttactaataaaagaaagaagggtggtgatgctcaggaaaggttcccaaagcgtcgcaagggagattttagctgcacacttccggcaattgatggtgcttccgctcaagtgagaggatggtcttttgggaacttgtcaaaaagagacgccacacgtttttctcgtgaggtcaagaagtttgggaatgatagccaaattgacttaatatcatcagaggttggtggggcagttgaagctgcaccaactgaagctcaagttgagctttttgactcattgattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="88817" stop="87441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88517" g_stop="88427" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88426" i_stop="88336" i_length="91">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88335" g_stop="88105" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="322" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87854" g_stop="87741" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="436" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E272833" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88517" e_stop="88427"/>
          <exon e_start="88335" e_stop="88105"/>
          <exon e_start="87854" e_stop="87741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATGCAGGTTGCCAATTTCTGTGGTGCTGAAGATGATGCAACTTTTTGGAGTCGATGGATAAAGCCAGAAGCAACTGCACACGCTGAAGTATTTAATACTACTTTACTAGGGATATATGTGTTTCTCTAATGTTTCCTATACCGATGAATTTTTTATTTTATGATATTTTCTTTGATAGGACGCTTTGGCTCCTCGAGCTGCTCGAAATAAAAAGAGTTATGCAGAAGCTAGCCCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAGGTAGGGCTAGTTAATTATGTACATGAGTTTATTTTGGCTCTTGTTCTACTTATAAAATGCATTTGTTGGAATAAACAGTTCCTTTGTTGCTTCAGTTGTGTGATTCTATTTTCTTTCCATCCATATGTATTTTATTCGTGGTAACATCTTGTCTTTTTCTTTTCGTCAAAAAAACGTCTTGTCTTTGACCAAATTATTTGAATGTGTTGATATCAAAATCATTAATCTGTTAATTTCTCTCTAATTTTAGGTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGAT</genome_strand>
        <mrna_strand>TGCTTTTAAGGTTGCCAATTTCTGTGGTGCTGAAGATGATGCAACTTTTTGGAGTCGATGGATAAAGCCAGAAGCAACTGCACACGCTGAA...........................................................................................GACGCTTTGGCTCCTCGAGCTGCTCGAAATAAAAAGAGTTATGCAGAAGCTAGCCCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG..........................................................................................................................................................................................................................................................GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379787" ref_strand="+" ref_description="SGN-E379787 [TUS-1-H15](-)">
      <seq>ttattcatcttttaagcatagtacatcgttgaattcagggcgttgactaaaaatttcacttccctggcaatgaaaaaagagagaagagaatgcaggccatgtaacttcctagtaatgattatggtgttgcctctatgcaatggatgtgtttgacatcataaatggaattgctcatcaaagtttctcaagttccattctcgaagaatgtcaattttttctgcttcagtatctccaagttcattctcttaaattctttagtgtctagctgtctcactagctgcagggtgtatttgtatgctcattctattaattaagacactctttatgagcatttttgaggcaaaaccttttgtttctgacttcttgttttaaaattgaattgtattctccttctgtcatgactagctactcaatctcttcttttttcgcttatccagtagtctccatccagaccctttccttttcttttgatataatactgcatgtaatcttttatattttgttggcttggtttaaaattgattacttaattgtactatacttctaccaagaataacatccaaactagtctctttttgtttatttcggtatagaactgcattcaattcttttcctgtatatctgggaacatcttatttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="92780" stop="91539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92480" g_stop="91839" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E379787" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92480" e_stop="91839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCATCTTTTAAGCATAGTACATCGTTGAATTCAGGGCGTTGACTAAAAATTTCACTTCCCTGGCAATGAAAAAAGAGAGAAGAGAATGCAGGCCATGTAACTTCCTAGTAATGATTATGGTGTTGCCTCTATGCAATGGATGTGTTTGACATCATAAATGGAATTGCTCATCAAAGTTTCTCAAGTTCCATTCTCGAAGAATGTCAATTTTTTCTGCTTCAGTATCTCCAAGTTCATTCTCTTAAATTCTTTAGTGTCTAGCTGTCTCACTAGCTGCAGGGTGTATTTGTATGCTCATTCTATTAATTAAGACACTCTTTATGAGCATTTTTGAGGCAAAACCTTTTGTTTCTGACTTCTTGTTTTAAAATTGAATTGTATTCTCCTTCTGTCATGACTAGCTACTCAATCTCTTCTTTTTTCGCTTATCCAGTAGTCTCCATCCAGACCCTTTCCTTTTCTTTTGATATAATACTGCATGTAATCTTTTATATTTTGTTGGCTTGGTTTAAAATTGATTACTTAATTGTACTATACTTCTACCAAGAATAACATCCAAACTAGTCTCTTTTTGTTTATTTCGGTATAGAACTGCATTCAATTCTTTTCCTGTATATCTGAGAACATCTTATTTTTAC</genome_strand>
        <mrna_strand>TTATTCATCTTTTAAGCATAGTACATCGTTGAATTCAGGGCGTTGACTAAAAATTTCACTTCCCTGGCAATGAAAAAAGAGAGAAGAGAATGCAGGCCATGTAACTTCCTAGTAATGATTATGGTGTTGCCTCTATGCAATGGATGTGTTTGACATCATAAATGGAATTGCTCATCAAAGTTTCTCAAGTTCCATTCTCGAAGAATGTCAATTTTTTCTGCTTCAGTATCTCCAAGTTCATTCTCTTAAATTCTTTAGTGTCTAGCTGTCTCACTAGCTGCAGGGTGTATTTGTATGCTCATTCTATTAATTAAGACACTCTTTATGAGCATTTTTGAGGCAAAACCTTTTGTTTCTGACTTCTTGTTTTAAAATTGAATTGTATTCTCCTTCTGTCATGACTAGCTACTCAATCTCTTCTTTTTTCGCTTATCCAGTAGTCTCCATCCAGACCCTTTCCTTTTCTTTTGATATAATACTGCATGTAATCTTTTATATTTTGTTGGCTTGGTTTAAAATTGATTACTTAATTGTACTATACTTCTACCAAGAATAACATCCAAACTAGTCTCTTTTTGTTTATTTCGGTATAGAACTGCATTCAATTCTTTTCCTGTATATCTGGGAACATCTTATTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379616" ref_strand="+" ref_description="SGN-E379616 [TUS-1-H15]">
      <seq>ctaattccatgataacttttgcatggctggaatcaagaggggcttaggaagaaatctctgaaacttggaacaccatacctcaggtcatttggtgggctatctggctcgaaacaaactatataatcttagaaggcaaaaagagtaacatgcacagccttaaacagagatgtctttctttggtagctttttggtgcaatctagctattgtactagatgtatatggaatgttaagacacaatagaggtattccacaacctgtaattatgcctattgcactggcttaatgcacaaatttattaaagctgtaatgacttattaaaaagaagttacaaatgttaagtaatgtccgtcttttcttgcgagtgagataatttctcgaggttctttatcttgcaagagtgtatttgcctctgaaaaggataacatttgatcactacccattaaataaaaaaggatcacagttggtcatctgtatctctatgaatgtcttatactgttgctttttgattgttattatttgatcagcttgcaataagcagaaagcaaagaggtagaaggaatgtgcctagcttacagaagaatgtaggatcatcatgtgacttgggaagtatggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93750" stop="92533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93450" g_stop="92833" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E379616" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93450" e_stop="92833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCATGATAACTTTTGCATGGCTGGAATCAAGAGGGGCTTAGGAAGAAATCTCTGAAACTTGGAACACCATACCTCAGGTCATTTGGTGGGCTATCTGGCTCGAAACAAACTATATAATCTTAGAAGGCAAAAAGAGTAACATGCACAGCCTTAAACAGAGATGTCTTTCTTTGGTAGCTTTTTGGTGCAATCTAGCTATTGTACTAGATGTATATGGAATGTTAAGACACAATAGAGGTATTCCACAACCTGTAATTATGCCTATTGCACTGGCTTAATGCACAAATTTATTAAAGCTGTAATGACTTATTAAAAAGAAGTTACAAATGTTAAGTAATGTCCGTCTTTTCTTGCGAGTGAGATAATTTCTCGAGGTTCTTTATCTTGCAAGAGTGTATTTGCCTCTGAAAAGGATAACATTTGATCACTACCCATTAAATAAAAAAGGATCACAGTTGGTCATCTGTATCTTTATGAATGTCTTATACTGTTGCTTTTTGATTGTTATTATTTGATCAGTTTGCAATAAGCAGAAAGCAAAGAGGTAGAAGGAATGTGCCTAGCTAACAGAAGAATGTAGGATCATCATGTGACTTGGGAAGTATGGTCTGG</genome_strand>
        <mrna_strand>CTAATTCCATGATAACTTTTGCATGGCTGGAATCAAGAGGGGCTTAGGAAGAAATCTCTGAAACTTGGAACACCATACCTCAGGTCATTTGGTGGGCTATCTGGCTCGAAACAAACTATATAATCTTAGAAGGCAAAAAGAGTAACATGCACAGCCTTAAACAGAGATGTCTTTCTTTGGTAGCTTTTTGGTGCAATCTAGCTATTGTACTAGATGTATATGGAATGTTAAGACACAATAGAGGTATTCCACAACCTGTAATTATGCCTATTGCACTGGCTTAATGCACAAATTTATTAAAGCTGTAATGACTTATTAAAAAGAAGTTACAAATGTTAAGTAATGTCCGTCTTTTCTTGCGAGTGAGATAATTTCTCGAGGTTCTTTATCTTGCAAGAGTGTATTTGCCTCTGAAAAGGATAACATTTGATCACTACCCATTAAATAAAAAAGGATCACAGTTGGTCATCTGTATCTCTATGAATGTCTTATACTGTTGCTTTTTGATTGTTATTATTTGATCAGCTTGCAATAAGCAGAAAGCAAAGAGGTAGAAGGAATGTGCCTAGCTTACAGAAGAATGTAGGATCATCATGTGACTTGGGAAGTATGGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201088" ref_strand="+" ref_description="SGN-E201088 [cLEC-10-M15]">
      <seq>ctaattccatgataacttttgcatggctggaatcaagaggggcttaggaagaaatctctgaaacttggaacaccatacctcaggtcatttggtgggctatctggctcgaaacaaactatataatcttagaaggcaaaaagagtaacatgcacagccttaaacagagatgtctttctttggtagctttttggtgcaatctagctattgtactagatgtatatggaatgttaagacacaatagaggtattccacaacctgtaattatgcctattgcactggcttaatgcacaaatttattaaagctgtaatgacttattaaaaagaagttacaaatgttaagtaatgtccgtcttttcttgcgagtgagataatttctcgaggttctttatcttgcaagagtgtatttgcctctgaaaaggataacatttgatcactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="93750" stop="92713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93450" g_stop="93013" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E201088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93450" e_stop="93013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCATGATAACTTTTGCATGGCTGGAATCAAGAGGGGCTTAGGAAGAAATCTCTGAAACTTGGAACACCATACCTCAGGTCATTTGGTGGGCTATCTGGCTCGAAACAAACTATATAATCTTAGAAGGCAAAAAGAGTAACATGCACAGCCTTAAACAGAGATGTCTTTCTTTGGTAGCTTTTTGGTGCAATCTAGCTATTGTACTAGATGTATATGGAATGTTAAGACACAATAGAGGTATTCCACAACCTGTAATTATGCCTATTGCACTGGCTTAATGCACAAATTTATTAAAGCTGTAATGACTTATTAAAAAGAAGTTACAAATGTTAAGTAATGTCCGTCTTTTCTTGCGAGTGAGATAATTTCTCGAGGTTCTTTATCTTGCAAGAGTGTATTTGCCTCTGAAAAGGATAACATTTGATCACTACC</genome_strand>
        <mrna_strand>CTAATTCCATGATAACTTTTGCATGGCTGGAATCAAGAGGGGCTTAGGAAGAAATCTCTGAAACTTGGAACACCATACCTCAGGTCATTTGGTGGGCTATCTGGCTCGAAACAAACTATATAATCTTAGAAGGCAAAAAGAGTAACATGCACAGCCTTAAACAGAGATGTCTTTCTTTGGTAGCTTTTTGGTGCAATCTAGCTATTGTACTAGATGTATATGGAATGTTAAGACACAATAGAGGTATTCCACAACCTGTAATTATGCCTATTGCACTGGCTTAATGCACAAATTTATTAAAGCTGTAATGACTTATTAAAAAGAAGTTACAAATGTTAAGTAATGTCCGTCTTTTCTTGCGAGTGAGATAATTTCTCGAGGTTCTTTATCTTGCAAGAGTGTATTTGCCTCTGAAAAGGATAACATTTGATCACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433972" ref_strand="-" ref_description="SGN-E433972 [STM-59-C14]">
      <seq>gcaagggttggcatagaagtactaggaattaaatgtttgcttgtaagattttgctagtctttttttttccccgaggaccagaccagtagcgcccagtttgaaacccagtggataatagtcttgctctttacccacttacattcctggcttttgttggtgggtgcacccacacatcacgcggtacgtttttacccttggaccaaagccttgtgggctttttattattccaatggcttgacccctctatttgtttttccccttcctaattgctatgtgggggaatagagatgtagttttagtaggttgcttgctcttgttgggagatactcccttgtaaattttcccaagttaatgcatatttggatttcaaatccatactctctgttcctattaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaactcgagactagagattgactagtctcgagggggggcccgtacccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101830" stop="81148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101531" g_stop="101152" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101151" i_stop="98742" i_length="2410">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98741" g_stop="98640" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="483" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E433972" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433972" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101531" e_stop="101152"/>
          <exon e_start="98741" e_stop="98640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTGCTTGTAAGAGTTTGCTAGTTTTTTTCTTTCCCTGAGGACCAGACCAGTAGCGCACAGTTTGAAACTCGGTGGATAATAGTCTTGCTCTTTACCTACTTACATACCTGGCTTTTGTTGGTGGCTGCACCCACACATCATGCGCTACGCTCTTACCCTTGGACCAAAGCCTTGTGGGCTTTCTATTATTCCAATGGCTTGA--CCACTATTTGTTTTTCCCCTTCCTAATTGCTGAGTGGGGGAATAGAGATGTAGTTTTAGTAGATTGCTTGCCCTTGTTGGGAGATACTTCCTTGTAAATTTTTCCCAATTTAATGCATATTTGGATTTCAAATCCATACTATGTTCCTGTTTATCTTTCTGTTCAACTTTTCCTTTTGTTTATGATATATCTATAATGCTAATGATAATGAAGAATATATTGATTGAAATGTCAGTTTGATTACAAGAACAACTATATATGGATTAATTAGAGCACACATAAAGTATAAACCTACGCTAAATCTTCTAAAAATTGCTGCAAAAAGTATTAATTAGTGATTATTCACATTTGATGCACAATTCGTATTACTGGCGACCAACACCGAGAAGTTATTTTGGGGCTCGAACAATTTAGTCTGTCAGTAAAAGTCACCTTTAGTGGCGACGAAAACCACTGCTCAAGGTTATGAATTTTGTCGCTAAAAGTCACTTTTAGCGTCTCAATCCGCCACTAAGGTTATGCATGTCGTCACTAAAAGTTGCCTTTAGTGGCAACAGAAACCGCCGCTAAAGTATCGTGCTAAAAACAACATTTAGTGGCGACTAAAATCGCCGCTAAAGAAATAAATGTCGCTAAAACTCTCTTTTCGTGGCGGCTAAAATTGCTGTTCAAGGTTATGCAAGTCGTCGTTAAAAGTGTCTTTAGTGGCGACTAAAGTCACCGCTACAAGTATGAATCTCGTCGCTAAAAGTCTGTTTAATCGCTGCTCATGTATGAATGTGCTAAAAGTCTCTTTAGTGGCGAAAAGAGTCACTGCTAAAAGTTTAAAAGTTTCTGTAGTGGCGACAAAAGTCGCTGCAGAAAGTTTGAGTGTCGTCCCTAAAAACATCTTTAGTGGCGACAAAAGTCGCTCTTAAAAATATGAATGTCGTCGCTAAAAGTTGTTTTAGTGGCGACTAGAATTGCTGCTAAAAGTATGAAGATCGTCGCTAAAGATGTTTTAGTGGCGACTAAAGTCGCTGCTAAAAGTTTGAAGGTCGCCGCTAAAAGTATGTTTAGTGGCGACTATAGCCGCTGCTAAAAGTTTGAAGGTCGTCGCTAAAAGTATGTTTTAGTGGCGACTGTAGTCGCTGCTAAAAGTTTGAATGTCGTCGCTAAAAGTATCTTTAGTGGCGACAATAGGCGCTGCTAAAAGTATGAAGGTCGTCGCTAAAAGTGTATTTTTAGTGGCGACAAGTTGCTGCTAAAAGTATGAACGTCGTCAGTAAAAGTATGAATGTCGTCGCTAAAAGTCCCTTATAGTGTCGACTATAACCGCCGTTAAGAGTATGAATGTGGTTGCTAAAAGTAACTTTTAGTGGCGACTAAAACCGACGCTAAAGGTAATGAACGTCTTCGCTAAATGTATTTACGACTTTGTCTGCTGCTAAAACTGTTGAATTTCATCGCAAAACTTATATGTGTCGCTAAAATCTTCTTTAGTGGCGATTTTTACTGCCTCTAAAACTCTTTATTTTGTCGCTAAAAGTCCTTTTTTGCTTTCAACTTTAACTATCGCTAAAACCTTAGATATTTTGTCGCTAAAGTCCAAGTATAACCACTGCTAAAATATATATGAATTTTTTCACTAAAGGTCAACTATAACAGCCGCCAAAACATATAATTTTGTCGCTAAAAGTTTCTGGCGACTATCACTGTCGCAAAAACTTTTGATGTTTGTCACTAAAAGTCGCTTTTATTTACGACTTTATCCGCCATTAAAAGTTTTTTTTTAAAACTAAAGTCGCTTTTAGTGGCGATCCTTATCGCCGATAAAACATCTGAACTTTGTTTCTTAAGTTGCTTTTAGTGGAAACTCTAATCGCCTCTAAAACGTCTTGCCAAAAATCACTTTTACTTGCGACTCAAACCACCGCTAAAATTTTTATTTTTTCTCAGTAAAGTCACTTTTAGTGGAGACTCTTATTTCCCGTAAAACATCTTAATTTTGTTGCCTAAAGTCACTTTTAGTGGCAACTCTAATCACCGCTTAAACATCTAAAATGTTGTTGCTAAAATTGCGACTCTTACTAACGCTAAAGCTATTAAACATTGTTGCTAATACTTAATATAATCGGCGCCACTAAAACTAATAAAAGTTGTTGCTAAGGTTATAATATTAGCGACGACGAATCGACACTAAATCTTTAGAAGTTAATATTAGCGACGACTGTAACAACTGCTAAAATGTATATATATGTTGTTGCTAGAAGTAACATATTAGCGGAGTCTTAAACAACCCGTAACACTTTCCACTTTTTTCGCTTAGGTTTCGATAATCGCCGCTAAAACTTCTATGATTTTCGCTAAAAGCCTATATAAGTGGCAACACTAAAAATCACAATAACTTTCAGTTTTTATTGGTAAAAATATTTATTAGTGGCGACTTTAATCGCCAATAAAACTTATAAAATTGATGCTAAAAGTGTCTTTTAGTGTCCACTTTAACCGCCACTATAACTATAATGGAAAATATAGGCTACTTTTTGTAATTCAAGCGGCCGCACACTAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GCAAGGGTTGGCATAGAAGTACTAGGAATTAAATGTTTGCTTGTAAGATTTTGCTAGTCTTTTTTTTTCCCCGAGGACCAGACCAGTAGCGCCCAGTTTGAAACCCAGTGGATAATAGTCTTGCTCTTTACCCACTTACATTCCTGGCTTTTGTTGGTGGGTGCACCCACACATCACGCGGTACGTTTTTACCCTTGGACCAAAGCCTTGTGGGCTTTTTATTATTCCAATGGCTTGACCCCTCTATTTGTTTTTCCCCTTCCTAATTGCTATGTGGGGGAATAGAGATGTAGTTTTAGTAGGTTGCTTGCTCTTGTTGGGAGATACTCCCTTGTAAA-TTTTCCCAAGTTAATGCATATTTGGATTTCAAATCCATACTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCCTATTAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAACTCGAGACTAGAGATTGACTAGTCTCGAGGGGGGGCCCGTACCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433971" ref_strand="-" ref_description="SGN-E433971 [STM-59-C14]">
      <seq>actagttctctcctagtctcgagttttttttttttttttttttttttttttttttttttttttttaataggaacagagagtatggatttgaaatccaaatatgcattaacttgggaaaatttacaagggagtatctcccaacaagagcaagcaacctactaaaactacatctctattcccccacatagcaattaggaaggggaaaaacaaatagagtggtcaagccattggaataatagaaagcccacaaggctttggtccaagggtaagagcgtagcgcgtgatgtgtgggtgcagccaccaacaaaagccaggaatgtaagtgggtaaagagcaagactattatccactgtgtttcaaactgtgcgctactggtctggtcctcggggaaagaaaaagactagcaaaatcttacaagcaaacatttaattcctagtacttctatgccaacccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="81148" stop="101830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98666" g_stop="98741" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98742" i_stop="101151" i_length="2410">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101152" g_stop="101531" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="457" r_length="381" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E433971" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433971" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98666" e_stop="98741"/>
          <exon e_start="101152" e_stop="101531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCTAGTGTGCGGCCGCTTGAATTACAAAAAGTAGCCTATATTTTCCATTATAGTTATAGTGGCGGTTAAAGTGGACACTAAAAGACACTTTTAGCATCAATTTTATAAGTTTTATTGGCGATTAAAGTCGCCACTAATAAATATTTTTACCAATAAAAACTGAAAGTTATTGTGATTTTTAGTGTTGCCACTTATATAGGCTTTTAGCGAAAATCATAGAAGTTTTAGCGGCGATTATCGAAACCTAAGCGAAAAAAGTGGAAAGTGTTACGGGTTGTTTAAGACTCCGCTAATATGTTACTTCTAGCAACAACATATATATACATTTTAGCAGTTGTTACAGTCGTCGCTAATATTAACTTCTAAAGATTTAGTGTCGATTCGTCGTCGCTAATATTATAACCTTAGCAACAACTTTTATTAGTTTTAGTGGCGCCGATTATATTAAGTATTAGCAACAATGTTTAATAGCTTTAGCGTTAGTAAGAGTCGCAATTTTAGCAACAACATTTTAGATGTTTAAGCGGTGATTAGAGTTGCCACTAAAAGTGACTTTAGGCAACAAAATTAAGATGTTTTACGGGAAATAAGAGTCTCCACTAAAAGTGACTTTACTGAGAAAAAATAAAAATTTTAGCGGTGGTTTGAGTCGCAAGTAAAAGTGATTTTTGGCAAGACGTTTTAGAGGCGATTAGAGTTTCCACTAAAAGCAACTTAAGAAACAAAGTTCAGATGTTTTATCGGCGATAAGGATCGCCACTAAAAGCGACTTTAGTTTTAAAAAAAAACTTTTAATGGCGGATAAAGTCGTAAATAAAAGCGACTTTTAGTGACAAACATCAAAAGTTTTTGCGACAGTGATAGTCGCCAGAAACTTTTAGCGACAAAATTATATGTTTTGGCGGCTGTTATAGTTGACCTTTAGTGAAAAAATTCATATATATTTTAGCAGTGGTTATACTTGGACTTTAGCGACAAAATATCTAAGGTTTTAGCGATAGTTAAAGTTGAAAGCAAAAAAGGACTTTTAGCGACAAAATAAAGAGTTTTAGAGGCAGTAAAAATCGCCACTAAAGAAGATTTTAGCGACACATATAAGTTTTGCGATGAAATTCAACAGTTTTAGCAGCAGACAAAGTCGTAAATACATTTAGCGAAGACGTTCATTACCTTTAGCGTCGGTTTTAGTCGCCACTAAAAGTTACTTTTAGCAACCACATTCATACTCTTAACGGCGGTTATAGTCGACACTATAAGGGACTTTTAGCGACGACATTCATACTTTTACTGACGACGTTCATACTTTTAGCAGCAACTTGTCGCCACTAAAAATACACTTTTAGCGACGACCTTCATACTTTTAGCAGCGCCTATTGTCGCCACTAAAGATACTTTTAGCGACGACATTCAAACTTTTAGCAGCGACTACAGTCGCCACTAAAACATACTTTTAGCGACGACCTTCAAACTTTTAGCAGCGGCTATAGTCGCCACTAAACATACTTTTAGCGGCGACCTTCAAACTTTTAGCAGCGACTTTAGTCGCCACTAAAACATCTTTAGCGACGATCTTCATACTTTTAGCAGCAATTCTAGTCGCCACTAAAACAACTTTTAGCGACGACATTCATATTTTTAAGAGCGACTTTTGTCGCCACTAAAGATGTTTTTAGGGACGACACTCAAACTTTCTGCAGCGACTTTTGTCGCCACTACAGAAACTTTTAAACTTTTAGCAGTGACTCTTTTCGCCACTAAAGAGACTTTTAGCACATTCATACATGAGCAGCGATTAAACAGACTTTTAGCGACGAGATTCATACTTGTAGCGGTGACTTTAGTCGCCACTAAAGACACTTTTAACGACGACTTGCATAACCTTGAACAGCAATTTTAGCCGCCACGAAAAGAGAGTTTTAGCGACATTTATTTCTTTAGCGGCGATTTTAGTCGCCACTAAATGTTGTTTTTAGCACGATACTTTAGCGGCGGTTTCTGTTGCCACTAAAGGCAACTTTTAGTGACGACATGCATAACCTTAGTGGCGGATTGAGACGCTAAAAGTGACTTTTAGCGACAAAATTCATAACCTTGAGCAGTGGTTTTCGTCGCCACTAAAGGTGACTTTTACTGACAGACTAAATTGTTCGAGCCCCAAAATAACTTCTCGGTGTTGGTCGCCAGTAATACGAATTGTGCATCAAATGTGAATAATCACTAATTAATACTTTTTGCAGCAATTTTTAGAAGATTTAGCGTAGGTTTATACTTTATGTGTGCTCTAATTAATCCATATATAGTTGTTCTTGTAATCAAACTGACATTTCAATCAATATATTCTTCATTATCATTAGCATTATAGATATATCATAAACAAAAGGAAAAGTTGAACAGAAAGATAAACAGGAACATAGTATGGATTTGAAATCCAAATATGCATTAAATTGGGAAAAATTTACAAGGAAGTATCTCCCAACAAGGGCAAGCAATCTACTAAAACTACATCTCTATTCCCCCACTCAGCAATTAGGAAGGGGAAAAACAAAT--AGTGGTCAAGCCATTGGAATAATAGAAAGCCCACAAGGCTTTGGTCCAAGGGTAAGAGCGTAGCGCATGATGTGTGGGTGCAGCCACCAACAAAAGCCAGGTATGTAAGTAGGTAAAGAGCAAGACTATTATCCACCGAGTTTCAAACTGTGCGCTACTGGTCTGGTCCTCAGGGAAAGAAAAAAACTAGCAAACTCTTACAAGCAAGCATTTCATTCCTAGCACTTCTATGCCAACCCTTGA</genome_strand>
        <mrna_strand>ACTAGTTCTCTCCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAGGAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTATGGATTTGAAATCCAAATATGCATTAACTTGGG-AAAATTTACAAGGGAGTATCTCCCAACAAGAGCAAGCAACCTACTAAAACTACATCTCTATTCCCCCACATAGCAATTAGGAAGGGGAAAAACAAATAGAGTGGTCAAGCCATTGGAATAATAGAAAGCCCACAAGGCTTTGGTCCAAGGGTAAGAGCGTAGCGCGTGATGTGTGGGTGCAGCCACCAACAAAAGCCAGGAATGTAAGTGGGTAAAGAGCAAGACTATTATCCACTGTGTTTCAAACTGTGCGCTACTGGTCTGGTCCTCGGGGAAAGAAAAAGACTAGCAAAATCTTACAAGCAAACATTTAATTCCTAGTACTTCTATGCCAACCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597869" ref_strand="+" ref_description="SGN-E597869 [73534]">
      <seq>caagtgtggatttagcacattgagacctgcaaattaccatttgtacatgagttttcctttttcctttttggtcctaactcaagttcatgccccacagtgattcacatcatgttgatcatataggtttagtgtttacaaatttgtagggaggaatcaagggttggcatagaagtactaggaattaaatgtttgcttgtaagattttgctagtctttttctttccccgaggaccagaccagtagcgcacggtttgaaacacagtggataattgtcttgccctttacccacttacattcctggcttttgttggtggctgcacccacacatcacgcgctacgctcttacccttggaccaaagccttgtgggctttctattattccaatggcttgaccactctatttgtttttccccttcctaattgctatgtgggggaatagagatgtagttttagtaggttgcttgctcttgttgggagaaggtcccttgtaaattttcccaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="101984" stop="100884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101684" g_stop="101183" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E597869" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101684" e_stop="101183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTGCTTGTAAGAGTTTGCTAGTTTTTTTCTTTCCCTGAGGACCAGACCAGTAGCGCACAGTTTGAAACTCGGTGGATAATAGTCTTGCTCTTTACCTACTTACATACCTGGCTTTTGTTGGTGGCTGCACCCACACATCATGCGCTACGCTCTTACCCTTGGACCAAAGCCTTGTGGGCTTTCTATTATTCCAATGGCTTGACCA--CTATTTGTTTTTCCCCTTCCTAATTGCTGAGTGGGGGAATAGAGATGTAGTTTTAGTAGATTGCTTGCCCTTGTTGGGAGATACTTCCTTGTAAATTTTTCCCAATTT</genome_strand>
        <mrna_strand>CAAGTGTGGATTTAGCACATTGAGACCTGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCATGCCCCACAGTGATTCACATCATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTACTAGGAATTAAATGTTTGCTTGTAAGATTTTGCTAGTCTTTTTCTTTCCCCGAGGACCAGACCAGTAGCGCACGGTTTGAAACACAGTGGATAATTGTCTTGCCCTTTACCCACTTACATTCCTGGCTTTTGTTGGTGGCTGCACCCACACATCACGCGCTACGCTCTTACCCTTGGACCAAAGCCTTGTGGGCTTTCTATTATTCCAATGGCTTGACCACTCTATTTGTTTTTCCCCTTCCTAATTGCTATGTGGGGGAATAGAGATGTAGTTTTAGTAGGTTGCTTGCTCTTGTTGGGAGAAGGTCCCTTGTAAA-TTTTCCCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275521" ref_strand="+" ref_description="SGN-E275521 [cLEN-10-G6]">
      <seq>taatggctgtattgaccaagttcacagtcagcttacttttcaagagttggaaacatgtgtatttaacagccatttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgcttcagtcggaagcggtttagcgaaaaacaagcagaaaaatggtgggcagagaaccgtgcaagagtttatgagctgtacaacgtacgcgtagtcgacaaggcaagcattggcactgcaagtgtggatttagcacattgagacatgcaaattaccatttgtacatgagttttcctttttcctttttggtcctaactcaagttcacgccacacagtgattcacattatgttgatcatataggtttagtgtttacaaatttgtagggaggaatcaagggttggcatagaagtgctaggaatgaaatgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102662" stop="101192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102362" g_stop="102078" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101794" g_stop="101492" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="588" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E275521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102362" e_stop="102078"/>
          <exon e_start="101794" e_stop="101492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTGC</genome_strand>
        <mrna_strand>TAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622052" ref_strand="+" ref_description="SGN-E622052 [72415]">
      <seq>ggcaatatcaattgcgggggaggagacggcaaatgcaaagcagcaaaagaaagtgatcaagtcacttacttctcagctgaaggaaatggctgaaaggctgcagtaggtcctggccgaaacatcaaatctcctaaatcagtttcctccgaatccaatattacctccagcgatatacctaatggttgtattgaccaagttcacaatcagcttacttttcaagaactggggtcaagtgtatctaacagccagttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgattcagtcggaagcggtttagtgagaaacaagctgaaaaatggtgggcagagaaccgtgcaagagtttatgagctgtacaatgtacgtgtagtcgacaaggcaagcattggcactgcaagtgtggatttagcacattgagacctgcaaattaccatttgtacatgagttttcctttttcctttttggtcctaactcaagttcatgccccacagtgattcacatcatgttgatcatataggtttagtgtttacaaatttgtagggaggaatcaagggttggcatagaagtactaggaattaaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102974" stop="101193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102674" g_stop="102599" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102598" i_stop="102464" i_length="135">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102463" g_stop="102078" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="461" r_length="385" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101794" g_stop="101493" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="763" r_length="302" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E622052" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102674" e_stop="102599"/>
          <exon e_start="102463" e_stop="102078"/>
          <exon e_start="101794" e_stop="101493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATATCAATTGCGGGGGAGGAGACAGCCAAATGCAAAGCAGCAAAAG-AAGTGATCAAGTCACTTACTTCTCAGGTAAGTTAAGAGTCATTTTTACCATTTTTACAAAAGTTGTGCATGTGTAGGAAAAAAGTTGTGCTGCTCTTCATTTCTCAGTTTCGTTAGCTTCTCGTCCTGAGATTATGTACTGTGTGTCTTTGTTTTTTATAGCTGAAGGAAATGGCTGAAAGGCTGCAAGTAGGTCCTGGCCGAAACGTCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTG</genome_strand>
        <mrna_strand>GGCAATATCAATTGCGGGGGAGGAGAC-GGCAAATGCAAAGCAGCAAAAGAAAGTGATCAAGTCACTTACTTCTCAG.......................................................................................................................................CTGAAGGAAATGGCTGAAAGGCTGC-AGTAGGTCCTGGCCGAAACATCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGCGATATACCTAATGGTTGTATTGACCAAGTTCACAATCAGCTTACTTTTCAAGAACTGGGGTCAAGTGTATCTAACAGCCAGTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGATTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGTTTAGTGAGAAACAAGCTGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAATGTACGTGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACCTGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCATGCCCCACAGTGATTCACATCATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTACTAGGAATTAAATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485277" ref_strand="+" ref_description="SGN-E485277 [cSTE-17-G14]">
      <seq>aagagcacaggtggaaactcttacacgcaaggctcaacttcaagaggtagaactggaaagaactagtaagcagctgaaggaggcagtatcaattgcgggggaggagacggccaaatgcaaagcagcaaaagaagtgatcaagtcacttacttctcagctgaaggaaatggctgaaaggctgccagtaggtcctggccgaaacatcaaatctcctaaatcagtttcctccgaatccaatattacctccagcgatatacctaatggttgtattgaccaagttcacaatcagcttacttttcaagaactggggtcaagtgtatctaacagccagttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgcttcagtcggaagcggtttagcgagaaacaagctgaaaaatggtgggcagagaaccgtgcaagagtttatgagctgtacaatgtacgtgtagtcgacaaggcaagcattggcactgcaagtgtggatttagcacattgagacctgcaaattaccatttgtacatgagttttcctttttcctttttggtccaaactcaagttcatgccccacagtgattcacatcatgttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103052" stop="101267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103042" g_stop="103033" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103032" i_stop="102746" i_length="287">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102745" g_stop="102599" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="157" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102598" i_stop="102464" i_length="135">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102463" g_stop="102078" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="543" r_length="386" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101794" g_stop="101567" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="771" r_length="228" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E485277" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103042" e_stop="103033"/>
          <exon e_start="102745" e_stop="102599"/>
          <exon e_start="102463" e_stop="102078"/>
          <exon e_start="101794" e_stop="101567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCACAGGTAGGTTGTTTTTCTACTATGCAGCTATTTCCTTCTGATGCAGTTTCTTCACCTCTCTACATGTTTTTATATTTGTTTCTGATATGGCTCTCAAACTTTTCAATGAGGTGCTGATTTGGCCTGTCACAAATAAAAAGTACCAAAATGTCTAGTTTTATGAAAAACATTAATAGCTGCATTTATCGAGTTGGTGATAGAAAACAAGATAAGCTTGTGTATGATTTTAATGCTTGTGCCAACTTTTAATATTGCTATGTGTCCAAACTCCTTGACTATCTTTATCATAGGTGGAAACTCTTACACGCAAGGCTCAACTTCAAGAGGTAGAACTGGAAAGAACTAGTAAGCAACTGAAGGAGGCAATATCAATTGCGGGGGAGGAGACAGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAGGTAAGTTAAGAGTCATTTTTACCATTTTTACAAAAGTTGTGCATGTGTAGGAAAAAAGTTGTGCTGCTCTTCATTTCTCAGTTTCGTTAGCTTCTCGTCCTGAGATTATGTACTGTGTGTCTTTGTTTTTTATAGCTGAAGGAAATGGCTGAAAGGCTGCAAGTAGGTCCTGGCCGAAACGTCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCA</genome_strand>
        <mrna_strand>AAGAGCACAG...............................................................................................................................................................................................................................................................................................GTGGAAACTCTTACACGCAAGGCTCAACTTCAAGAGGTAGAACTGGAAAGAACTAGTAAGCAGCTGAAGGAGGCAGTATCAATTGCGGGGGAGGAGACGGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAG.......................................................................................................................................CTGAAGGAAATGGCTGAAAGGCTGCCAGTAGGTCCTGGCCGAAACATCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGCGATATACCTAATGGTTGTATTGACCAAGTTCACAATCAGCTTACTTTTCAAGAACTGGGGTCAAGTGTATCTAACAGCCAGTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGTTTAGCGAGAAACAAGCTGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAATGTACGTGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACCTGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCAAACTCAAGTTCATGCCCCACAGTGATTCACATCATGTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589041" ref_strand="+" ref_description="SGN-E589041 [42607]">
      <seq>cagcgatatacctaatggttgtattgaccaagttcacaatcagcttacttttcaagaactggggtcaagtgtatctaacagccagttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgattcagtcggaagcggtttagtgagaaacaagctgaaaaatggtgggcagagaaccgtgcaagagtttatgagctgtacaatgtacgtgtagtcgacaaggcaagcattggcactgcaagtgtggatttagcacattgagacctgcaaattaccatttgtacatgagttttcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102674" stop="101324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102374" g_stop="102078" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101794" g_stop="101624" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="468" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E589041" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102374" e_stop="102078"/>
          <exon e_start="101794" e_stop="101624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTT</genome_strand>
        <mrna_strand>CAGCGATATACCTAATGGTTGTATTGACCAAGTTCACAATCAGCTTACTTTTCAAGAACTGGGGTCAAGTGTATCTAACAGCCAGTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGATTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGTTTAGTGAGAAACAAGCTGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAATGTACGTGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACCTGCAAATTACCATTTGTACATGAGTTTTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574181" ref_strand="+" ref_description="SGN-E574181 [33608]">
      <seq>agaactagtaagcagctgaaggaggcaatatcaattgcgggggaggagacggccaaatgcaaagcagcaaaagaagtgatcaagtcacttacttctcagctgaaggaaatggctgaaaggctgccagtaggtcctggccgaaacatcaaatctcctaaatcagtttcctccgaatccaatattacctccagcgatatacctaatggctgtattgaccaagttcacagtcagcttacttttcaagaactggggtcaagtgtatctaacagccagttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgcttcagtcggaagcgggtttagcgagaaacaagctgaaaaatggtgcgcaagagaaccgtgcaagaagttatgagctgtacaatgtacgtgtagtcgacaaggcaagcattggcaacctgcaaagttgtggatntagcacattgagacctggcaaattaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="102997" stop="101344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102697" g_stop="102599" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102598" i_stop="102464" i_length="135">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102463" g_stop="102078" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="485" r_length="386" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101794" g_stop="101644" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="643" r_length="158" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E574181" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102697" e_stop="102599"/>
          <exon e_start="102463" e_stop="102078"/>
          <exon e_start="101794" e_stop="101644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTAGTAAGCAACTGAAGGAGGCAATATCAATTGCGGGGGAGGAGACAGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAGGTAAGTTAAGAGTCATTTTTACCATTTTTACAAAAGTTGTGCATGTGTAGGAAAAAAGTTGTGCTGCTCTTCATTTCTCAGTTTCGTTAGCTTCTCGTCCTGAGATTATGTACTGTGTGTCTTTGTTTTTTATAGCTGAAGGAAATGGCTGAAAGGCTGCAAGTAGGTCCTGGCCGAAACGTCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGC-GGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGC-AGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGC-A-CTGC-AAG-TGTGGATTTAGCACATTGAGACAT-GCAAATTACCATT</genome_strand>
        <mrna_strand>AGAACTAGTAAGCAGCTGAAGGAGGCAATATCAATTGCGGGGGAGGAGACGGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAG.......................................................................................................................................CTGAAGGAAATGGCTGAAAGGCTGCCAGTAGGTCCTGGCCGAAACATCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGCGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAACTGGGGTCAAGTGTATCTAACAGCCAGTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGGTTTAGCGAGAAACAAGCTGAAAAATGGTGCGCAAGAGAACCGTGCAAGAAGTTATGAGCTGTACAATGTACGTGTAGTCGACAAGGCAAGCATTGGCAACCTGCAAAGTTGTGGATNTAGCACATTGAGACCTGGCAAATTACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427131" ref_strand="+" ref_description="SGN-E427131 [STM-47-H18]">
      <seq>aagagcacaggtggaaactcttacacgcaaggctcaacttcaagaggtagaactggaaagaactagtaagcagctgaaggaggcagtatcaattgcgggggaggagacggccaaatgcaaagcagcaaaagaagtgatcaagtcacttacttctcagctgaaggaaatggctgaaaggctgccagtaggtcctggccgaaacatcaaatctcctaaatcagtttcctccgaatccaatattacctccagcgatatacctaatggttgtattgaccaagttcacaatcagcttacttttcaagaactggggtcaagtgtatctaacagccagttgctttctaatggatcaagcaatgccagtaatcgcagtgctgttcacaatagacaagggaatccagaggcaacaacaaaaaatgggggcagaacaaaagaatgtgattctcgtaacgagaatgaatgggttgagcaagatgagccaggtgtatatattactcttacctccctacctggaggcgtcaaagatcttaaaagggttcgcttcagtcggaagcggtttagcgagaaacaagctgaaaaatggtgggcagagaaccgtgcaagagtttatgagctgtacaatgtacgtgtagtcgacaaggcaagcattggcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="103052" stop="101385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103042" g_stop="103033" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103032" i_stop="102746" i_length="287">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102745" g_stop="102599" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="157" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102598" i_stop="102464" i_length="135">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102463" g_stop="102078" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="543" r_length="386" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101794" g_stop="101685" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="653" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E427131" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103042" e_stop="103033"/>
          <exon e_start="102745" e_stop="102599"/>
          <exon e_start="102463" e_stop="102078"/>
          <exon e_start="101794" e_stop="101685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCACAGGTAGGTTGTTTTTCTACTATGCAGCTATTTCCTTCTGATGCAGTTTCTTCACCTCTCTACATGTTTTTATATTTGTTTCTGATATGGCTCTCAAACTTTTCAATGAGGTGCTGATTTGGCCTGTCACAAATAAAAAGTACCAAAATGTCTAGTTTTATGAAAAACATTAATAGCTGCATTTATCGAGTTGGTGATAGAAAACAAGATAAGCTTGTGTATGATTTTAATGCTTGTGCCAACTTTTAATATTGCTATGTGTCCAAACTCCTTGACTATCTTTATCATAGGTGGAAACTCTTACACGCAAGGCTCAACTTCAAGAGGTAGAACTGGAAAGAACTAGTAAGCAACTGAAGGAGGCAATATCAATTGCGGGGGAGGAGACAGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAGGTAAGTTAAGAGTCATTTTTACCATTTTTACAAAAGTTGTGCATGTGTAGGAAAAAAGTTGTGCTGCTCTTCATTTCTCAGTTTCGTTAGCTTCTCGTCCTGAGATTATGTACTGTGTGTCTTTGTTTTTTATAGCTGAAGGAAATGGCTGAAAGGCTGCAAGTAGGTCCTGGCCGAAACGTCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAGGTAAACAGCCAATGTAAATCTCCTGTTATTGTTTTTGTGGCTGCTGACTAACCTGCCAACTTCTCTTTGTCCTCTTATGTGTACATTAAAGAAAATACATTTGAGCATGTGAACAAGATTCTCTTAGTTGCTTTTATATCTGCAGTTATCCCGGAGTCGCCAATTAAATTTATGCTGTTTGTGCTATAGACCTCTTTTTACTTGTCTAGATTGCCAGAACTTCACTATTCTAATTATATAATGAAATCATATAATCATTATTTTTGAATGTCAAAAATTGCAGTCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTG</genome_strand>
        <mrna_strand>AAGAGCACAG...............................................................................................................................................................................................................................................................................................GTGGAAACTCTTACACGCAAGGCTCAACTTCAAGAGGTAGAACTGGAAAGAACTAGTAAGCAGCTGAAGGAGGCAGTATCAATTGCGGGGGAGGAGACGGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAG.......................................................................................................................................CTGAAGGAAATGGCTGAAAGGCTGCCAGTAGGTCCTGGCCGAAACATCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGCGATATACCTAATGGTTGTATTGACCAAGTTCACAATCAGCTTACTTTTCAAGAACTGGGGTCAAGTGTATCTAACAGCCAGTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAG...........................................................................................................................................................................................................................................................................................TCGGAAGCGGTTTAGCGAGAAACAAGCTGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAATGTACGTGTAGTCGACAAGGCAAGCATTGGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479958" ref_strand="+" ref_description="SGN-E479958 [cSTD-12-A19]">
      <seq>aggagtcgaaacttgttcctacttgtgttgcagctcttgttgaacccaatttttgccaggttacttgtggacatagcttgacagttgctctaaccacttcaggtcatgtatatacaatgggaagtcctgtatatggtcaattaggtcatcctcaagctgatgggaagcttccttgtcatgttgaaggaaaactttcaaagagctttgtggaggagatagcatgtggtgcttaccatgttgctgtattgacttcccgaactgaagtttacacatggggaaagggagcaaatggaagattgggtcatggtaatactgatgacagaaattctcccaccttagtggaagctttgaaagacaagcaagtcaaaagtattgcttgtggtactaattttacggcagctatttgccttcataaatgggcgtgaggggttgaccaatccatgtgttctggctgccgtcttccttttaatttcaaaaggaatcgccacaactgttataactgtggtctagtcttttgtcattcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104438" stop="103313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104138" g_stop="103613" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E479958" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104138" e_stop="103613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAATTTTTGCCAGGTTACTTGTGGACATAGCTTGACAGTTGCTTTAACCACTTCAGGTCATGTATATACAATGGGAAGTCCTGTATATGGTCAATTAGGTCATCCTCAAGCTGATGGGAAGCTTCCTTGTCATGTTGAAGGAAAACTCTCAAAGAGCTTTGTGGAGGAGATAGCATGTGGTGCTTACCATGTTGCTGTATTGACTTCCCGAACTGAAGTTTACACATGGGGGAAGGGAGCAAATGGAAGATTAGGTCATGGTACTACTGATGACAGAAATTCTCCCACCTTAGTGGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACGGCAGCTATTTGCCTTCATAAATGGGCGTCAGGGGTTGACCAATCCATGTGTTCTGGCTGCCGTCTTCCTTTTAATTTCAAAAGGAAGCGCCACAACTGTTATAACTGTGGTCTTGTCTTTTGTCATTCATG</genome_strand>
        <mrna_strand>AGGAGTCGAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAATTTTTGCCAGGTTACTTGTGGACATAGCTTGACAGTTGCTCTAACCACTTCAGGTCATGTATATACAATGGGAAGTCCTGTATATGGTCAATTAGGTCATCCTCAAGCTGATGGGAAGCTTCCTTGTCATGTTGAAGGAAAACTTTCAAAGAGCTTTGTGGAGGAGATAGCATGTGGTGCTTACCATGTTGCTGTATTGACTTCCCGAACTGAAGTTTACACATGGGGAAAGGGAGCAAATGGAAGATTGGGTCATGGTAATACTGATGACAGAAATTCTCCCACCTTAGTGGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACGGCAGCTATTTGCCTTCATAAATGGGCGTGAGGGGTTGACCAATCCATGTGTTCTGGCTGCCGTCTTCCTTTTAATTTCAAAAGGAATCGCCACAACTGTTATAACTGTGGTCTAGTCTTTTGTCATTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339546" ref_strand="+" ref_description="SGN-E339546 [cTOE-16-G6]">
      <seq>gttgttgaagtcatggtggggaactctagttcaagcaattgttcttcagggaaactttttacttggggagatggggataaaggtcgacttgggcatggtgacaaggagtcaaaacttgttcctacttgtgttgcagctcttgttgaacccaatttttgccaggttacttgtggacatagcttgacagttgctttaaccacttcaggtcatgtatatacaatgggaagtcctgtatatggtcaattaggtcatcctcaagctgatgggaagcttccttgtcatgttgaaggaaaactctcaaagagctttgtggaggagatagcatgtggtgcttaccatgttgctgtattgacttcccgaactgaagtttacacatgggggaagggagcaaatggaagattaggtcatggtactactgatgacagaaattctcccaccttagtggaagctttgaaagacaagcaagtcaaaagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="104541" stop="103465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104241" g_stop="103765" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E339546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104241" e_stop="103765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGAAGTCATGGTGGGGAACTCTAGTTCAAGCAATTGTTCTTCAGGGAAACTTTTTACTTGGGGAGATGGGGATAAAGGTCGACTTGGGCATGGTGACAAGGAGTCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAATTTTTGCCAGGTTACTTGTGGACATAGCTTGACAGTTGCTTTAACCACTTCAGGTCATGTATATACAATGGGAAGTCCTGTATATGGTCAATTAGGTCATCCTCAAGCTGATGGGAAGCTTCCTTGTCATGTTGAAGGAAAACTCTCAAAGAGCTTTGTGGAGGAGATAGCATGTGGTGCTTACCATGTTGCTGTATTGACTTCCCGAACTGAAGTTTACACATGGGGGAAGGGAGCAAATGGAAGATTAGGTCATGGTACTACTGATGACAGAAATTCTCCCACCTTAGTGGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATT</genome_strand>
        <mrna_strand>GTTGTTGAAGTCATGGTGGGGAACTCTAGTTCAAGCAATTGTTCTTCAGGGAAACTTTTTACTTGGGGAGATGGGGATAAAGGTCGACTTGGGCATGGTGACAAGGAGTCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAATTTTTGCCAGGTTACTTGTGGACATAGCTTGACAGTTGCTTTAACCACTTCAGGTCATGTATATACAATGGGAAGTCCTGTATATGGTCAATTAGGTCATCCTCAAGCTGATGGGAAGCTTCCTTGTCATGTTGAAGGAAAACTCTCAAAGAGCTTTGTGGAGGAGATAGCATGTGGTGCTTACCATGTTGCTGTATTGACTTCCCGAACTGAAGTTTACACATGGGGGAAGGGAGCAAATGGAAGATTAGGTCATGGTACTACTGATGACAGAAATTCTCCCACCTTAGTGGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323738" ref_strand="+" ref_description="SGN-E323738 [cTOC-2-N18]">
      <seq>caccttaagctgagtcatgtgtcaagaataatatctggacagcgcactccaatatttcaaaggcatccacgacctgagaaagagtaccaatctttttctctcatatataatgatagatcactggatttgatatgcaaagataaagaggaagcagaggtatggtttagtggcttgaaggctttaatttcacgagggcaccagcgaaagtggagaacagactcaaggagcgatggaattccttctggtgccactagtcccagaacatatacgcggagaagctctcctctgcattctccttttggtagtggtgatagctcacagaaggatggtggtgaccaacttcgccttcatagtccatatggaagcccacctaaaactggtgtaaataaggccttttctgatgttattttatatgctgtacctcccaagggctttttcccttcagattctgctagtgcttcaattcattctttatcttctggaggttcaaatgacatacatggtcagatgaaggcaatgggtatggataattttagagtaagcctttcaagtgctgttagctcatcaagtcaagggtctggtcacgatgatggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="111593" stop="104592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111293" g_stop="111246" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111245" i_stop="105702" i_length="5544">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105701" g_stop="105621" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="129" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105620" i_stop="105483" i_length="138">
            <donor d_prob="0.457" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105482" g_stop="105288" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="324" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105287" i_stop="105166" i_length="122">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105165" g_stop="104892" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="598" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E323738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111293" e_stop="111246"/>
          <exon e_start="105701" e_stop="105621"/>
          <exon e_start="105482" e_stop="105288"/>
          <exon e_start="105165" e_stop="104892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTAAGCTGAGTCATGTGTCAAGAATAATATCTGGACAGCGCACTGTAAGTTTTCTCTGCTGAAGAGAGCTAATCTCCTCTCTATGAACTTTTGATATGTTTTATATGATTCTATCTACAAATTTGTCCTTCTTTCTATATCTCCTTCTGTTTTTTCTAAATGGAGATGGAAGAACTTATATGGTGAAAGGTCAAATATGTGGTTAAATATATGCGTATTAGTGGCTCAAATGGATTTATAAGTTATCATAGTTCAGTAATTAACTTGCATCTTAATTAGTCCATGAGCTTCTGTTTCACTAAATGTTTGTTTCTGTTGCTTAGCAATCCCTACTGTCTGTTCATTAGTGAACATATATATAGAAAGAAGGTAATAGTTAAGGTTTTAAAAGATGTTAAGGTTAATACAAAGCTAATGGAAAACAAAGACTGCAGCTGGAACAAAAAGCCGAGAAAAATAACAGAATAGAAGTAGAAGGACCTCTTTAATTTCAGTTACATATATAAGACCCTCGAATGAAATAAAAACAATAACACATGACCTAACAGTTAACTAAATAACTCCTAAATATTTGGAATACATGACCAACAACTAATTGACTAAGTCTTACTTAAAACAAAAGCAGTAAAACTAAATTTACTGCAGTTCAAAAGCAGATTCCTAACATTTTTCGCTTTGGAAACTGTAAACTCCAATTTCTGTCTGAGAAGCTTGAATTTGCTGACCGGTATAGGCTTATAAATAGTTCTGCTTGCTGGTTTTCAGACTTGCAGTAGACTAGAGTCACTTCTTCCCTTTGCTGCACTTCTCTCGGGAAATAGAACTTGATGTTGAAATGCTTGGTCTTCTTGTGAAACACCGGATTGTTTGAGATTGCAATAGCTGCCTGGTTGTCAACAAGAATGATAGTACTCTCCTTCTGTTTCAAATGTAAATCACACATGATCTTTCTAAGCCACAAGACTTGGTTTATTGCTCCTGTTGCTGTTGTTAATTCAGCTTTTGCAGTGGATTGTGCAACTATCCTGTTTTTAGATGACCATGAGAAGATTCCTGAACCTAGGCTGAAACAATGGCCAGAGGTACTTCTCACATCATCTGCGGATCCAACCCAATCACTATTTGAGAATCCAAGTAACTTGAAGCTTGGACACTTCTCACACGTTACACCATAATCAACAATACCTTTAATATATCTAATATTCTTTTTGTTGCTCTTAAATGCAATTCACTTGCACAATGCATACAACGAGATAAGAGACTTACAACAAATATAATATCAGGCCTTGTTGCAGTGAGGTACATTCAAAAGCACCCAATCAAGCTTCTATAATAACCTTCACAAACTTTGTAGACTCATCTTCTTTATAGAGCTTCTCTTTTTGATTCATCGGCGTGCTCATCGACTTGCATTCCTCCATTTGAAATTTCTTCAGAATTTTTTTTGAGAATTAAAACCATTGCATTGCTAATAATTTCGACAGAATTTCAGATGATCATCTGTCCTACTATATCAAGCTCTTGGCGCTTGCTTTAGACCATAAAGAGCCTTTTTAAGCAGATATACTTTTTCTTCATCACCATGTTTCACAAATCCTGATAGTTGCTTGACATATATTTCCTCCTCCAGTATGCCATTTAAGAAGGTTGATTTGACATTGAGTTGGAACACCTTCCATTCTATTTGTGCTGCTATTGCAAGTAGCAATTGATTGTGTCTAATCTTGCTACATGAAAAAGAAGTGTAAGAGTAATCAACACCATAAATTTGTGCATACCCTTTAACTACGAGTCTCGCATTGTGTTTGTTGAATGAACTATCTGCATTTAACTTTGTTCTGAAGATCCATCTCACACCAATGACTTTTCTATCTTCAGGTTTGTCGACTAATACCCAAGCTTTATTTTTCTCAATCATGGAGATCTCCTTGATTGCTTTCTTTTATTTTGGGTTTTATTTTGGTTCTTGAAGAGCTTCTACTGCTCCAGTACCACTGGTCATTCTCCTAATTTCTGAGAATTCATTTTCACTAAAATGAACATTTCTTGTGATTGTCATCTTTCCTGTTTGAGGATGATAGATCTTGTAAGCTTTAGAAACTCCACTATAACCCACAAGGGTGCCTGTTAATTGCCTTCTTGTCAAGTTTGTCACGTTTAATGTGAGGAACATGAACAAAACACTCAACCAAACACTTTAAGAAAACTCAGTGAAGGCTTAAACTCGTACCAAGCTTCAAATGGTGTTTTATCCTCCTAAGCTTTCGTTGTAAGTCGATTCTGCCTAAAACTACGGTATTTGCTGCTTCTACCCAAAATATCTTAGGAACTCCTTCTCATGCAACATACACCTGGTTATCTACATTATCCATCTGTTTCTTCTTTCACTAACACCATTTTGTTCTGGTGTCTATGGCGTTGTAAGCTGATGCACAATGTCGGCCTCCTCACAGAATGAATCAAATTTTCTTGAGGTGTATTCCTTCCTATTATCTGACCTCAAAGCTTGTATCTTACAATTACTTTGATTTTCCTTCAATTTCTTGAATTTCCAGAATACACAAGCAACTTCTGACTTGAATCTCAAGAAAAAAATCCAACACATTCTTGTAAAATCATCAATGAAAATAATATAATAGATGCGACGTTGTAGTGATGGAGTTCTTTGAGGCCCGGCGACATCAGTGTGAACTAGTCGTAGCTTTTGTGAGGCTGTGTAGGTTGAATTTGGAAATGAGTTTCTGTGTTGTTTACCATATTGGTAGGCATGGCATTTTGTGGAATTTGCTTCCAGATCAGGTAAGTTCACCATTTTCAACTTTTGAATTTTGACAAGCCCTTGATAATGATAATGCCCAAGTCTCTTATGCCACAACTCAGCGACATTTGTTTTTGCTGAATACAACATTTTCTCTTCCTCAAATAGATCTAATGAGAAACTTTCTTCTCATTTTGACTTTGAACTAATCATGTCTCGAGGAATCCTTAATCAAGCAGTATTTATCTTCAAAATAAAGTTTGAAACCTTTTTCTAAGAATTGACAAACAATTAACAAGTTCCGATCTAAGTCAGGTACATAAAGAACACCTGCTATTGTTTTTGTAACCGCTTGTGTCTCAATTGCAATAGTTCTTCTTCCTTTTGCTGGAAGGTGACCAACATGGCCTATTCTAACCTTTGCAACTCGAGTAGGCTTCAATTTTTATGAAGAGTTCTTTATCATGAGTCATGTGATTTGTGCATCCGCTATCAATCAGCCACAACTCACTGGAAACATTACTTGCAAAACATGATGCAACAAATAGTTGATACTCCTCTTGTTCATTAAAAACTTGAGAGCATATACATCCCGCTACTGAGTTTTTCTGTTACAAATGTTTTTTTCGTGCCCAAAGTGATTGCACTTAGTTCAGGCCTTCTCCAACACTTGAAAGGTGCGTGTCCGATCTTGTCGCAATGCTTACAAAGAGGGAATTTTCCTTTGAAGCTACCTATTTTGTTTTTGTTATTGCGTGCGCACCTTCTCCATCTCTTGGTTGGTACGTCTTGTTCTTTTCTTTATATCGTCCATCATCTTGATGCTTGGCAGGTAAGGCTCCTTCAACATCTCCTTCTCGTCTCACAACACGTCGTTGCTCTTGTGCTTTAAAGGCCATTAAGAGCTTCGTTAGTGTAATATTGGACAATTCCTTAGTATTTTCTGTGGTTGTAATGGTCGCCTCAAATCTTTCCGGTACTGTTACAAGGATTTTCTCAACTGTCGTTAAAAGTGGTACCCAACAATCTGATGTGATTTGCTATGTTAAGAAGTCAGTCAAAGTACTCCTCGATGGTTTCATAGTCCTTTATCCTTTGCAGCTCAAACTCACGTACCAAATTGAGCACTTGCATCCCTCGAATTCTTTCATCTCCTTCATACTCAGTCTTGAAATAATTCCATACCTCTTTTGCTGACTTCAGGGACATGATACATACATACTATGAAACTGCAGCAAATAAACATGCCTTTGCCTTAGATTTCCTAACTTCCCTATCCTGGTGATTTTTAATCTGCGGCATTGTGGGATTGTTTGGCAAGGGAGCAATCTCATATTCATCTTGTACAGCCTCCCAGAGATCCAAAACTTTCAGATTTGCCTGCATTTTTAACAGCCTAGAATCACTAACTTTCTCCACCAAAAGTTGGTGGTGCCATTGAAGAAAAACTTCCTTCTCCGTTTATAATATTCACGAAATATGATTTGTGCGCGCACACACACAAGTCCTTCAAGAAAATAAAGCTCCTGATACCAATTGAAGGTTTTAAAAGTTTTTAAGGTTAATACACAACTAAAGGAAAAAACAAAGACTGCGACTGAAACTAAAAGATGAGAGAAGTAACAGAATAGAAGTAGAAGGACCTCTTTTATTAATGCTTCAGGTTACATATATAAGAACCTCAAATGAAATAAAATAATAATGCACGACCTAGCAGTTCACTAAATAACTCCTGAATAAAGGAACACATGACTAACAACTAATTGACTAAGTCTTACTTAAAACAAAAGCCGTAAAATTTAATTTACTGCAGTTCAAAAGTAGATTCCTAACAAATAGACTAAGAGTTCCTTGGAGAGAACTGTAATCCAATGTGCATCAAATTAGTGAGATCTAGCAAGATAAGCAACCTAAATGTTAAATTTGATACATAATTTTAATCAATGTTCTTGAACTATCATGAACCGTGTCATCAGTGTCCACAAATGTGTCTCAAAAGAATAGCTTCTTTATCTTCTTTTGGAAATATCATGTTAAATATATTCTTAGTCTTTTAACTGTCAAAATTAAGAGGACATAAGAGGAAGAAAAATTGGAGGATGGTAGGGATCAAACATCTTCTGCTAAAGGAATTTTTGCTTATGTCATGGTTAATCAACAAATGTATACTAATCTATTTGTCTTCATTTCTCTGTCTCTTCTATATGTATATCCGCATATGCTCCTCAATAAGTAAACATGGTTACTCGTAAACACTTTTTTCCTTTGAATTGGTAAATAAATATTTTTATTGATACTAAAGGAAACACTTAGATGGTTCTTGCAGATGCATAATGTGGGAACCACCTATAAAAAAATTAAACAGAAAAGCCCCAGTGTGGAAGATCAATAAACCTGTAAAGGACTAATGAACTCTAGCATGCTGTCTTCATCCTTTATGTCTTGCATGTTTCACCAAAAACTATACCACAATTTTACGCTTGATGTCTTTTCATATGTTATATACGTCATTCTGAGGAAATATTGCTGAATTTGTATGCTTATTTTCATGTTAAAACTATGTGGTCGTCTGAACACTCTGGGTTAAAGTCCATGCTATACTAGCTGTTGTTGGTTTGATTTTGTTCGCTTTATCGTAAGTAATGATTTCTTTGGGCTTGTTCACATAGGTACAGACTTTGATGATATGAATTTGGCATCAATGTCTTTTTCTTTTTTATTTTGCCAAATTTTTAGTTCTTATTGGACATGCTTTCAGTCTAGTCTAACAACCTATATGAAGGGTTAGTGGTGTATTGGACTGATAAACATTGCTTTTGCTCTTTTCCAGCCAATATTTCAAAGGCATCCACGACCTGAGAAAGAGTACCAATCTTTTTCTCTCATATATAATGATAGATCACTGGATTTGGTAAGAATTTCATTAGTAACAGCTGTATCTTTTTTAGAGGGAAATTTTGTATGTAATTCAGGCAATTTTGTCTTATTTTTGAATGAATCGGTTACAGAAACTCACTCTCACACCTTGCTCTTCAATCGTATGTTCTAGATATGCAAAGATAAAGAGGAAGCAGAGGTATGGTTTAGTGGCTTGAAGGCTTTAATTTCACGAGGGCACCAGCGAAAGTGGAGAACAGACTCAAGGAGCGATGGAATTCCTTCTGGTGCCACTAGTCCCAGAACATATACGCGGAGAAGCTCTCCTCTGCATTCTCCTTTTGGTAGTGGTGATAGCTCACAGAAGGTACGTTCCTTCCCTCACGCCTAAGCATGCATATGTAGCTGATACTTTATGTTTGTCAATATTGAGGTTCAATTATATAATTTTGTTTTTCTCTAAGTTGAATGACATCATTTTTCCATCAGGATGGTGGTGACCAACTTCGCCTTCATAGTCCATATGGAAGCCCACCTAAAACTGGTGTAAATAAGGCCTTTTCTGATGTTATTTTATATGCTGTACCTCCCAAGGGCTTTTTCCCTTCAGATTCTGCTAGTGCTTCAATTCATTCTTTATCTTCTGGAGGTTCAAATGACATACATGGTCAGATGAAGGCAATGGGTATGGATAATTTTAGAGTAAGCCTTTCAAGTGCTGTTAGCTCATCAAGTCAAGGGTCTGGTCACGATGATGGTGATG</genome_strand>
        <mrna_strand>CACCTTAAGCTGAGTCATGTGTCAAGAATAATATCTGGACAGCGCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATATTTCAAAGGCATCCACGACCTGAGAAAGAGTACCAATCTTTTTCTCTCATATATAATGATAGATCACTGGATTTG..........................................................................................................................................ATATGCAAAGATAAAGAGGAAGCAGAGGTATGGTTTAGTGGCTTGAAGGCTTTAATTTCACGAGGGCACCAGCGAAAGTGGAGAACAGACTCAAGGAGCGATGGAATTCCTTCTGGTGCCACTAGTCCCAGAACATATACGCGGAGAAGCTCTCCTCTGCATTCTCCTTTTGGTAGTGGTGATAGCTCACAGAAG..........................................................................................................................GATGGTGGTGACCAACTTCGCCTTCATAGTCCATATGGAAGCCCACCTAAAACTGGTGTAAATAAGGCCTTTTCTGATGTTATTTTATATGCTGTACCTCCCAAGGGCTTTTTCCCTTCAGATTCTGCTAGTGCTTCAATTCATTCTTTATCTTCTGGAGGTTCAAATGACATACATGGTCAGATGAAGGCAATGGGTATGGATAATTTTAGAGTAAGCCTTTCAAGTGCTGTTAGCTCATCAAGTCAAGGGTCTGGTCACGATGATGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732533" ref_strand="+" ref_description="SGN-E732533 [LB02BG05]">
      <seq>cattgaagagagagaaaaaggagagagagagagagagaaatggcgagagatagctgcttggcgcgtgtgacggctggggtggccgtcggtggtgcaattggtggcgctgttggtgctgtttatgggacatatgaggctgttagatacaaggttcccggcttaatgaaaattcgatacattggccaaactactctgggaagtgctgccatttttggtctctttttgggagctggaagcttgatacactgtggaaagtcatactgaggatctctttactctttttgtctcaaagagtatagaacaatatcatcaacattatcagaagcatgcttcgtgttcttccaatttgcttttcattctgtaattttccggttcaaaccgagttttctcttagcttttacctccatttaatggtggagccttacccgttgtgaatcttgattagtcgagctagtggatttcagagaccggatgggttanacgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="115768" stop="119683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116068" g_stop="116179" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116180" i_stop="118091" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118092" g_stop="118129" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="150" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118130" i_stop="119042" i_length="913">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119043" g_stop="119383" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="491" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="503"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E732533" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116068" e_stop="116179"/>
          <exon e_start="118092" e_stop="118129"/>
          <exon e_start="119043" e_stop="119383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGAAGAGAGAGAAAAAGGAGAGAGAGAGAGAGAGAAATGGCGAGAGATAGCTGCTTGGCGCGTGTGACGGCTGGGGTGGCCGTCGGTGGTGCAATTGGTGGCGCTGTTGGTAAATTCCTTCAAACTTTTCTTCTAAAACCCTACTAACCATTTTTCTCATTTTTGCTAACTTTTTTTTTGCTCTTAATCGATACTGTTGCTGTAATTGGCTTGAGAAATGACTAATTAAATGGAGTTATATAGTCGTTGAGGATTCATATAGCACACCCTGACTTGTTTGGGACTGAGGAGTAGTTGTTGATGTCATATATCAATTGTGTTCTAAATTTTATGAGCTTGTTTGATCTGGTAATACAGTCAATGAGGGCTCATATAGCAAACGCCAGCCTGTTTGGGACTGAGGAGTAGTTGATGTCATTGCTCAATTGTGTTCTAGATTTTATGAGCTTGTTTGATTGAGTAATATAGTCAATGAGGGTTCAAATAGCCAACACCAGCCAGTTTGGGACTGAGTAGTAGTTTGATGTCATTGCTCAATTGTGTTCTAGATTTTATGAACTTGTTTGATTGAGTAATATAGTCAATGAGGGTTCAAATAGCCAACACCAGCCTGTTTGGGACTGAGGAGTAGTTTGATGTCATTGCTCAATTGTGTTCTAGATTTTATGAGCTTGTTTGACTGAGTAATATAGTCAATGAGGGTTCAAATAGCCAACACCAGCCTGTTTGGGACTGAGGAGTAGTTTGATGTCATTGCTCAATTGTTTTCTAAATTTTATTAACTTGTTTGATCAAGTAATATAGTCAATGAGGGTTCATATAGCCAACACCAACCTGTTTGGGACTGAGGAGTAGTTGATGTCATTGCTCAATTGTGTTCTAGATTTTATGAACTTGTTTGATAGTTATTGCTAACTCTACTTATTTGAGCGTTTTATTGTTGATTTCAAGTGTGATAGAAGAGGAAAGGTGGTGTATGTAGAAAGGAGGACTAGAAACAGTCATGATGTGGTCAATGATCTAAATGGGTCCTAGTAGAGTGGAATTGCAATAGAAGATTTCCATTAAAGATCCTGACTAGTTTGGGATTGAGGCATAATGGATGGACTATTTGGGAATTGATTGATGACATTGCATAATTAGATGGTGATTTTGTGGGTTTATCAATGTTACTGATAGGAAATGGCAGAAGGGAACTCTTATTTAATAAACCTCAGGGTAGGGCCTTCACACTGGAAAGATCGTATCCATAGTTAATGAAGGGTGACAGAGCTTGAGTACAGAAACATTAGCTATTAGTTTCCATTAGTGGAATGGAATGGGTTGGACTAGAGAAGAATGGTATAATGGATTCATATAGCTGACCTGCTAGTTTAAGATTGAGGTGTAGTTGATTGTTTGGGCTGAGTATTAGCAGAAAATGTGTGAAGAGGTTAGAGCTTTCTTTGTAGGACTTTAAGTAGACTTACTAAAAAATTCTGCGTAGTAATTCTTTTTTTGGGATATCTGAGAAATCCCCGAGGGTCGGCAGCTCATAGTTTGAAACTTGATGAGTATTGGGCCTGTTCCTCTACCCTTTTCTACTTAAATACTAGGCTTTTATCTGTGAGTTTGAATCCATGACGTGTGCCAACCAACACTTGAGTGCTACTCCCTTACCACTAGATCAAAGCTCTTGGGGCCTTTGCTTAGTAATTTTTATCATATTATAAAAAAGAAACATCTAATTTTCTTAATTGGCATCAGCAGATAAAATGCATGCAAAATTTCTTTTAAGAAGATAATAAAGAACGAGCAACCTTTTCTTGTTGATAAGGTAATATAAAGTCGAGCAACTGTCTTTTTGATAAGGTAGATAAAAGACAAGAAACCTTTTACGAATTGGATTTAGATGTGTTACAACTGGCAATTAGATTGCCACATTAAGAAGTATGATTACTTTTATGGCAATGTCTCAATCAGACATTACTGAAAGAAGATTCAGTAATTTGAACTGCATTTGATTCGTGGTTCATTTGTAGGTGCTGTTTATGGGACATATGAGGCTGTTAGATACAAGGTAAGTTCTTCATCCTTTTCTACCTTCTCCTTTCTTTTTTTGTATTATTTAATTTACTGGCTAGATTTAATGTCAATTCTCCTCTTCTTGGTTTGAGTACTACAAATAAATGTCCTTATCAAAAGAAGTAGTGCAAGTAAATAATCTAGGTTTAACCTTGGCCTTTAATCATTGATTTCATTGAAGTGCCTTCAAAGCTATATACATGTGGAATGAAACTGCAGTTTATGGTTGACGGTTAGCCAGCTTGCAGTGCAGGCTTCGGAATTCCCACTCAATGTTTTTAAACAATAGAAACATATTTTAATCTATCAACAATATCATGTAGGGGTCTTAACACTTTGTTTTCCAAGGTATCCAGATTGTGGTTTATGTTAGACCTTCATGACATGTTTGCGTGATGACTAGAATCTACATCAACAACTCACTCATTTCCAGAAAAAAATTGCATGCTTATTTTTGTTGAGTGAAAACGAAAACAACAAATGAAGTTCAAAAAGCTACCTGTGTTTTCCTGGACAACTCAGACGTCAAGTAATGGACAAGCATTACTGAGGGCGTTGAGGATCTTACTTACGAGAGAAGTAGCTCTTTCTTTTTCTTTTTCATTGTACTTGATTTCTGGCTTCTGCCTTTACTACTATCTGTTTCTGGATAAATAAATTATAAATAAGGATTCTGCTTTGATCTTTTTGTTTCTTTACCTTTGTGTCGAGATGTCTAATGGTTTTTTTCCTCCTTTCGCGATTGAGATGCAAGTGAAATCTGTTGATTGTCAAAGTTTCATGTTGTGGTTCCCTTATTATAGTCTTCTTACATTTGCTCAAATTTGTTGAACTTTTGATATGGTTATTAAAGTTTTCCTGCCATACTATTAGCCCATGACGGCATGAACTTTCTGAATATTTTGTAGGTTCCCGGCTTAATGAAAATTCGATACATTGGCCAAACTACTCTGGGAAGTGCTGCCATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGATGGGTTAAACGAAAAAGAA</genome_strand>
        <mrna_strand>CATTGAAGAGAGAGAAAAAGGAGAGAGAGAGAGAGAGAAATGGCGAGAGATAGCTGCTTGGCGCGTGTGACGGCTGGGGTGGCCGTCGGTGGTGCAATTGGTGGCGCTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGTTTATGGGACATATGAGGCTGTTAGATACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGGCTTAATGAAAATTCGATACATTGGCCAAACTACTCTGGGAAGTGCTGCCATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGATGGGTTANACGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544820" ref_strand="+" ref_description="SGN-E544820 [TUS-67-F15]">
      <seq>ccatttttggtctctttttgggagctggaagcttgatacactgtggaaagtcatactgaggatctctttactctttttgtctcaaagagtatagaacaatatcatcaacattatcagaagcatgcttcgtgttcttccaatttgcttttcattctgtaattttccggttcaaaccgagttttctcttagcttttacctccatttaatggtggagccttacccgttgtgaatcttgattagtcgagctagtggatttcagagaccggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="118798" stop="119664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119098" g_stop="119373" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E544820" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119098" e_stop="119373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGATGGGTTAAA</genome_strand>
        <mrna_strand>CCATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308497" ref_strand="+" ref_description="SGN-E308497 [cLEY-21-B1]">
      <seq>catttttggtctctttttgggagctggaagcttgatacactgtggaaagtcatactgaggatctctttactctttttgtctcaaagagtatagaacaatatcatcaacattatcagaagcatgcttcgtgttcttccaatttgcttttcattctgtaattttccggttcaaaccgagttttctcttagcttttacctccatttaatggtggagccttacccgttgtgaatcttgattagtcgagctagtggatttcagagaccggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="+" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="118799" stop="119664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119099" g_stop="119373" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="+" ref_id="SGN-E308497" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119099" e_stop="119373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGATGGGTTAAA</genome_strand>
        <mrna_strand>CATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420128" ref_strand="-" ref_description="SGN-E420128 [STM-30-D6]">
      <seq>acaatatgtcaccataggcttagtaattggacattttcagtatcatggggatattcagttcatatttatgagaaaattatgccaagaagtcatttaattaaacccattgaaacatttgacacttggagtggtagacctgaaaatcctccattctacatgtttaatacgaggtcacgtgcaatagattcttgtgaaactcctcatattttttacttgaaatctattgggggagcgcagaataaaaatgaaattatgaccacgtattcgcgatcggtggtgcggaagttgcagggttgtccgatcgacggcaaccatccggcgaattatgtcaacaagattcaagtctactctcctagaaaaaaacgcgctgagatgggtcgatgtgagtgttgtgatattattcacacaactggttcaaacaaggcacaagtcaaattgagggaatgctttaccaatgagaaaattgcttagttaactataatattatgcaaattcttgccaaaaagaaatatagaaaacatttttatatctttagttaaaaaaaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125707" stop="123775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125407" g_stop="125042" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125041" i_stop="124313" i_length="729">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124312" g_stop="124209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="476" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124208" i_stop="124138" i_length="71">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124137" g_stop="124089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="525" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="548"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E420128" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125407" e_stop="125042"/>
          <exon e_start="124312" e_stop="124209"/>
          <exon e_start="124137" e_stop="124089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATATGTCACCATAGGCTTAGCAATTGGACATTTTCAGTATCATGGGGATATTCGATTCATATTTATGAGAAGATTATGCCAAGGAGTCATTTAATTAAACCTATTCAAACATTTAATACTTGGAG---TAAACCTCAAAATCCTCCATTTTACATGTTTAATACGAGATCAAACGTAAATGATTCTTGTGAAACTCCTCATATTTTTTACTTGAAATCTATTGGAGGA--GC-GAATAAAAATGGAATTATGGCCACGTATTCGCGATCGGTGGTGCGGAAGTTGCAAGGTTGTCCGATCAACGGCAACCATCCGGCAAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGTGCAGAGGTAAATTTTGTATACACTTATCTATGCTCTCGATATATTTTATAATTAAATCAAAATTTAAATATCGAATAATAAAAACTATTTTCACATAAAATTACTAAACTTTACCGTAAAGATTACAAAAAAAATTATTTTATCATCACGTTAGATATAGAGAAAACAACATAAAAGAATTATGTATGTAGAAGTGAGCAGCAAAAATAGAATTATGATAATTTATTTAAAATCAACTAATTAGAGATTGGGTCAGGGAAAAAACAGAAGAAGACAAAATTAGAGATTATTTAATTCACTAGTTGACTTAGTTACAAAATAATTTATTTATAATCAACTAATTAAATGTTTTGAGATTGCTGCAATTGAAAATTCATTTGAGTTATTCATATATAATAGTTCAAAATTCAAAATTTATGAAGTTATACATTAGTTTTAAATTAATATATAAAGATAAAGCCAAAATTCTCAGTCAAATATTTATTAGCACATATATATATATTTGAGTATATTTTCAAATTAACTTCAAAATAAAAATAAGTGAATTTTCAGTCAAATATTTAATTATTACACTTAATTATGATTTGCATACTTATTCTAGAGTATATTTTCAAACTCACTTATTAAAAATAAGTCAAATATTTATAGTTCTTACACTTAATTATAATTTGCAGATTTGTTTGAGTATATATAGTTGTTATAATAAATATTAATTTTTTTATTTTATTTTTCCAGATGGATCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAAGAAGGCAATAGTCCAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAAATATAATTTTTGTGTTAATATTTTTGGTTAGGATTCTATAGTACTGACTATAAAATACTTGCTAGTCGTACTATAATATTATGCAAATTCTAGCCAAAAAGAAATATAGAAAAATTTTTT</genome_strand>
        <mrna_strand>ACAATATGTCACCATAGGCTTAGTAATTGGACATTTTCAGTATCATGGGGATATTCAGTTCATATTTATGAGAAAATTATGCCAAGAAGTCATTTAATTAAACCCATTGAAACATTTGACACTTGGAGTGGTAGACCTGAAAATCCTCCATTCTACATGTTTAATACGAGGTCACGTGCAATAGATTCTTGTGAAACTCCTCATATTTTTTACTTGAAATCTATTGGGGGAGCGCAGAATAAAAATGAAATTATGACCACGTATTCGCGATCGGTGGTGCGGAAGTTGCAGGGTTGTCCGATCGACGGCAACCATCCGGCGAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAACAAGGCACAAGTCAAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAC.......................................................................TATAATATTATGCAAATTCTTGCCAAAAAGAAATATAGAAAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431955" ref_strand="-" ref_description="SGN-E431955 [STM-56-C14]">
      <seq>tcgcgatcggtggtgcggaagttgcagggttgtccgatcgacggcaaccatccggcgaattatgtcaacaagattcaagtctactctcctagaaaaaaacgcgctgagatgggtcgatgtgagtgttgtgatattattcacacaactggttcaaacaaggcacaagtcaaattgagggaatgctttaccaatgagaaaattgcttagttaactataatattatgcaaattcttgccaaaaagaaatatagagagaatattttatatctttagcaaatatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125449" stop="123785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125149" g_stop="125042" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125041" i_stop="124313" i_length="729">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124312" g_stop="124209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="212" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124208" i_stop="124138" i_length="71">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124137" g_stop="124089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="261" r_length="49" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E431955" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431955" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="125149" e_stop="125042"/>
          <exon e_start="124312" e_stop="124209"/>
          <exon e_start="124137" e_stop="124089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGATCGGTGGTGCGGAAGTTGCAAGGTTGTCCGATCAACGGCAACCATCCGGCAAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGTGCAGAGGTAAATTTTGTATACACTTATCTATGCTCTCGATATATTTTATAATTAAATCAAAATTTAAATATCGAATAATAAAAACTATTTTCACATAAAATTACTAAACTTTACCGTAAAGATTACAAAAAAAATTATTTTATCATCACGTTAGATATAGAGAAAACAACATAAAAGAATTATGTATGTAGAAGTGAGCAGCAAAAATAGAATTATGATAATTTATTTAAAATCAACTAATTAGAGATTGGGTCAGGGAAAAAACAGAAGAAGACAAAATTAGAGATTATTTAATTCACTAGTTGACTTAGTTACAAAATAATTTATTTATAATCAACTAATTAAATGTTTTGAGATTGCTGCAATTGAAAATTCATTTGAGTTATTCATATATAATAGTTCAAAATTCAAAATTTATGAAGTTATACATTAGTTTTAAATTAATATATAAAGATAAAGCCAAAATTCTCAGTCAAATATTTATTAGCACATATATATATATTTGAGTATATTTTCAAATTAACTTCAAAATAAAAATAAGTGAATTTTCAGTCAAATATTTAATTATTACACTTAATTATGATTTGCATACTTATTCTAGAGTATATTTTCAAACTCACTTATTAAAAATAAGTCAAATATTTATAGTTCTTACACTTAATTATAATTTGCAGATTTGTTTGAGTATATATAGTTGTTATAATAAATATTAATTTTTTTATTTTATTTTTCCAGATGGATCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAAGAAGGCAATAGTCCAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAAATATAATTTTTGTGTTAATATTTTTGGTTAGGATTCTATAGTACTGACTATAAAATACTTGCTAGTCGTACTATAATATTATGCAAATTCTAGCCAAAAAGAAATATAGAAAAATTTTTT</genome_strand>
        <mrna_strand>TCGCGATCGGTGGTGCGGAAGTTGCAGGGTTGTCCGATCGACGGCAACCATCCGGCGAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAACAAGGCACAAGTCAAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAC.......................................................................TATAATATTATGCAAATTCTTGCCAAAAAGAAATATAGAGAGAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400734" ref_strand="+" ref_description="SGN-E400734 [PPC-2-A5]">
      <seq>tcgcgatcggtggtgcggaagttgcagggttgtccgatcgacggcaaccatccggcgaattatgtcaacaagattcaagtctactctcctagaaaaaaacgcgctgagatgggtcgatgtgagtgttgtgatattattcacacaactggttcaaacaaggcacaagtcaaattgagggaatgctttaccaatgagaaaattgcttagttaactataatattatgcaaattcttgccacaaagaaatatagaaaacatttttatatctttagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125449" stop="123775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125149" g_stop="125042" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125041" i_stop="124313" i_length="729">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124312" g_stop="124209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="212" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124208" i_stop="124138" i_length="71">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124137" g_stop="124089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="261" r_length="49" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="284"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E400734" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125149" e_stop="125042"/>
          <exon e_start="124312" e_stop="124209"/>
          <exon e_start="124137" e_stop="124089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGATCGGTGGTGCGGAAGTTGCAAGGTTGTCCGATCAACGGCAACCATCCGGCAAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGTGCAGAGGTAAATTTTGTATACACTTATCTATGCTCTCGATATATTTTATAATTAAATCAAAATTTAAATATCGAATAATAAAAACTATTTTCACATAAAATTACTAAACTTTACCGTAAAGATTACAAAAAAAATTATTTTATCATCACGTTAGATATAGAGAAAACAACATAAAAGAATTATGTATGTAGAAGTGAGCAGCAAAAATAGAATTATGATAATTTATTTAAAATCAACTAATTAGAGATTGGGTCAGGGAAAAAACAGAAGAAGACAAAATTAGAGATTATTTAATTCACTAGTTGACTTAGTTACAAAATAATTTATTTATAATCAACTAATTAAATGTTTTGAGATTGCTGCAATTGAAAATTCATTTGAGTTATTCATATATAATAGTTCAAAATTCAAAATTTATGAAGTTATACATTAGTTTTAAATTAATATATAAAGATAAAGCCAAAATTCTCAGTCAAATATTTATTAGCACATATATATATATTTGAGTATATTTTCAAATTAACTTCAAAATAAAAATAAGTGAATTTTCAGTCAAATATTTAATTATTACACTTAATTATGATTTGCATACTTATTCTAGAGTATATTTTCAAACTCACTTATTAAAAATAAGTCAAATATTTATAGTTCTTACACTTAATTATAATTTGCAGATTTGTTTGAGTATATATAGTTGTTATAATAAATATTAATTTTTTTATTTTATTTTTCCAGATGGATCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAAGAAGGCAATAGTCCAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAAATATAATTTTTGTGTTAATATTTTTGGTTAGGATTCTATAGTACTGACTATAAAATACTTGCTAGTCGTACTATAATATTATGCAAATTCTAGCCAAAAAGAAATATAGAAAAATTTTTT</genome_strand>
        <mrna_strand>TCGCGATCGGTGGTGCGGAAGTTGCAGGGTTGTCCGATCGACGGCAACCATCCGGCGAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAACAAGGCACAAGTCAAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAC.......................................................................TATAATATTATGCAAATTCTTGCCACAAAGAAATATAGAAAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431954" ref_strand="+" ref_description="SGN-E431954 [STM-56-C14]">
      <seq>tcgcgatcggtggtgcggaagttgcagggttgtccgatcgacggcaaccatccggcgaattatgtcaacaagattcaagtctactctcctagaaaaaaacgcgctgagatgggtcgatgtgagtgttgtgatattattcacacaactggttcaaacaaggcacaagtcaaattgagggaatgctttaccaatgagaaaattgcttagttaactataatattatgcaaattcttgccaaaaagaaatatagaaaacatttttatatctttagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125449" stop="123775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125149" g_stop="125042" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125041" i_stop="124313" i_length="729">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124312" g_stop="124209" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="212" r_length="104" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124208" i_stop="124138" i_length="71">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124137" g_stop="124089" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="261" r_length="49" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="284"/>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E431954" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125149" e_stop="125042"/>
          <exon e_start="124312" e_stop="124209"/>
          <exon e_start="124137" e_stop="124089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGATCGGTGGTGCGGAAGTTGCAAGGTTGTCCGATCAACGGCAACCATCCGGCAAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGTGCAGAGGTAAATTTTGTATACACTTATCTATGCTCTCGATATATTTTATAATTAAATCAAAATTTAAATATCGAATAATAAAAACTATTTTCACATAAAATTACTAAACTTTACCGTAAAGATTACAAAAAAAATTATTTTATCATCACGTTAGATATAGAGAAAACAACATAAAAGAATTATGTATGTAGAAGTGAGCAGCAAAAATAGAATTATGATAATTTATTTAAAATCAACTAATTAGAGATTGGGTCAGGGAAAAAACAGAAGAAGACAAAATTAGAGATTATTTAATTCACTAGTTGACTTAGTTACAAAATAATTTATTTATAATCAACTAATTAAATGTTTTGAGATTGCTGCAATTGAAAATTCATTTGAGTTATTCATATATAATAGTTCAAAATTCAAAATTTATGAAGTTATACATTAGTTTTAAATTAATATATAAAGATAAAGCCAAAATTCTCAGTCAAATATTTATTAGCACATATATATATATTTGAGTATATTTTCAAATTAACTTCAAAATAAAAATAAGTGAATTTTCAGTCAAATATTTAATTATTACACTTAATTATGATTTGCATACTTATTCTAGAGTATATTTTCAAACTCACTTATTAAAAATAAGTCAAATATTTATAGTTCTTACACTTAATTATAATTTGCAGATTTGTTTGAGTATATATAGTTGTTATAATAAATATTAATTTTTTTATTTTATTTTTCCAGATGGATCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAAGAAGGCAATAGTCCAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAAATATAATTTTTGTGTTAATATTTTTGGTTAGGATTCTATAGTACTGACTATAAAATACTTGCTAGTCGTACTATAATATTATGCAAATTCTAGCCAAAAAGAAATATAGAAAAATTTTTT</genome_strand>
        <mrna_strand>TCGCGATCGGTGGTGCGGAAGTTGCAGGGTTGTCCGATCGACGGCAACCATCCGGCGAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGCGCTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAACAAGGCACAAGTCAAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAC.......................................................................TATAATATTATGCAAATTCTTGCCAAAAAGAAATATAGAAAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405711" ref_strand="+" ref_description="SGN-E405711 [PPI-1-K4]">
      <seq>aaaaagttctcatttttcttcagaaaaaaaaatgttatttccttcatttgattcattgaaagagaagtttgcttcaatatttgacaagtattttgtggttaatctttgcaaagttatcctattttctggtgttattctttacttggcctcaatttttctttttatagatccaaattgtccaacttcaccttatgaatattcaccaatttcatcaaatgacacaaatcttagtcatttaatttttggtctacttggatctgaaaaggcatggcattatagaaaaagttacattgaaacatggtggaaaccaaaattaacaagaggttacttgtttcttgatgtgtcacctaatccaaatttgttaccatggtcaaaaaattcacccccttatagagtttcaacaaatataacaaaattagtacaagaaactcaccacattgcaccgattatggctagaatggtacatggtatcaaggaattaattgatgaacaacatgaaggtgttagatgggtgattatgggagacgacgattcgatatttttcttggaaaatctagttgatgttcttggaaaatatgatcataacaagtattactattttggaggtcaaagtgagtacattttatctaatttttggtactcttttaatcaagttttgggggtgctggaattattatgagttttccattagcaaaagcattggctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="126922" stop="125610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126622" g_stop="125910" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E405711" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126622" e_stop="125910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTGTCATTTTTCTTCAAGAAAAAAAAAATGTTACTTCTTTTTATTGATTCATTGAGAGAGAAGTTTAGTTCAATATTTGACAAGTATTTTGTTGCTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTAGCCTCAATTTTTCTTTTTAAAGATCCAAATTGTCCAACTACTACACCTCATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATATTTGGTTTACTTGGATCTGAAAAAGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAGACCAAAAATAACAAGAGGTTACTTATTTCTTGATGTGTCACCTAATCCAAATTTATTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCAATTATGGCTAGAATGGTACATGGTATCAAGGAGTTATTTGATCAAGAACATGAAGGTGTTAGATGGGTGATTATGGGAGACGACGATTCGATATTTTTCTTGGAAAATCTAGTTGATGTTCTTGGAAAATATGATCATAACAAGTATTACTATTTTGGAGGTCAAAGTGAGTACATTTTGTCTAATTTTTGGTACTCATTTAATCAAGGTTTTGGTGGTGCTGGAATTATTATGAGTTTTCCATTGGCAAAAGCATTGGCTCA</genome_strand>
        <mrna_strand>AAAAAGTTCTCATTTTTCTTC-AG-AAAAAAAAATGTTATTTCCTTCATTTGATTCATTGAAAGAGAAGTTTGCTTCAATATTTGACAAGTATTTTGTGGTTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTGGCCTCAATTTTTCTTTTTATAGATCCAAATTGTCCAACT--T-CACCTTATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATTTTTGGTCTACTTGGATCTGAAAAGGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAAACCAAAATTAACAAGAGGTTACTTGTTTCTTGATGTGTCACCTAATCCAAATTTGTTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCGATTATGGCTAGAATGGTACATGGTATCAAGGAATTAATTGATGAACAACATGAAGGTGTTAGATGGGTGATTATGGGAGACGACGATTCGATATTTTTCTTGGAAAATCTAGTTGATGTTCTTGGAAAATATGATCATAACAAGTATTACTATTTTGGAGGTCAAAGTGAGTACATTTTATCTAATTTTTGGTACTCTTTTAATCAA-GTTTTGGGGGTGCTGGAATTATTATGAGTTTTCCATTAGCAAAAGCATTGGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420127" ref_strand="+" ref_description="SGN-E420127 [STM-30-D6]">
      <seq>aaaaagttctcatttttcttcaagaaaaaaaaatgttatttccttcatttgattcattgaaagagaagtttgcttcaatatttgacaagtattttgtggttaatctttgcaaagttatcctattttctggtgttattctttacttggcctcaatttttctttttatagatccaaattgtccaacttcaccttatgaatattcaccaatttcatcaaatgacacaaatcttagtcatttaatttttggtctacttggatctgaaaaggcatggcattatagaaaaagttacattgaaacatggtggaaaccaaaattaacaagaggttacttgtttcttgatgtgtcacctaatccaaatttgttaccatggtcaaaaaattcacccccttatagagtttcaacaaatataacaaaattagtacaagaaactcaccacattgcaccgattatggctagaatggtacatggtatcaaggaattaattgatgaacaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="126922" stop="125821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126622" g_stop="126121" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E420127" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126622" e_stop="126121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTGTCATTTTTCTTCAAGAAAAAAAAAATGTTACTTCTTTTTATTGATTCATTGAGAGAGAAGTTTAGTTCAATATTTGACAAGTATTTTGTTGCTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTAGCCTCAATTTTTCTTTTTAAAGATCCAAATTGTCCAACTACTACACCTCATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATATTTGGTTTACTTGGATCTGAAAAAGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAGACCAAAAATAACAAGAGGTTACTTATTTCTTGATGTGTCACCTAATCCAAATTTATTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCAATTATGGCTAGAATGGTACATGGTATCAAGGAGTTATTTGATCAAGAACATG</genome_strand>
        <mrna_strand>AAAAAGTTCTCATTTTTCTTCAAG-AAAAAAAAATGTTATTTCCTTCATTTGATTCATTGAAAGAGAAGTTTGCTTCAATATTTGACAAGTATTTTGTGGTTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTGGCCTCAATTTTTCTTTTTATAGATCCAAATTGTCCAACT--T-CACCTTATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATTTTTGGTCTACTTGGATCTGAAAAGGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAAACCAAAATTAACAAGAGGTTACTTGTTTCTTGATGTGTCACCTAATCCAAATTTGTTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCGATTATGGCTAGAATGGTACATGGTATCAAGGAATTAATTGATGAACAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612778" ref_strand="+" ref_description="SGN-E612778 [62544]">
      <seq>gtgattacatccatgtagacagaccaacagttgatgaagattataatgaagatcgcgtgaagataccctgggagaatgaaatgagggctgccaaaagagcaagggatgatgaagctcctaaccatcaagaggatgtgaggaaagcatcagtgactagaatgccatcccagacaaatcatcagataaggtctgctgcagagatgtcatctagctttagtgaagatgacaaagcagaagaaaccagttcttttgaggattgagagatttgcagtttccagagaaaaaagttaaaaagtccagaagctgtagtgattcttgaattcctatttgttgatagcagaagtttctttggatttgtacagttcaaaacaacgtataatgctctcatcagtataccagcatgtgaaattaaagaactttggtctttgtacagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129310" stop="81157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129010" g_stop="128927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="86" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96">
            <donor d_prob="0.981" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128830" g_stop="128730" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128159" g_stop="127911" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="438" r_length="251" r_score="0.932"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127910" i_stop="126647" i_length="1264">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126646" g_stop="126618" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="467" r_length="29" r_score="0.759"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E612778" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129010" e_stop="128927"/>
          <exon e_start="128830" e_stop="128730"/>
          <exon e_start="128159" e_stop="127911"/>
          <exon e_start="126646" e_stop="126618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGGGTAAGCTTTTCAGCTCATGTTAGTATGTTACTATTTGTAATTCCTTTAGATAAAGATATGGTCATTTGAACTCTTTGAATACGAAATATTTTGAAGGTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAGGTTTGGCCATGTTTAAGACCTTGGTTTCTAATCTAATGTGCATCTATATTTGAACGTATATGGCTCTATCTTGAGATGTTTGACTGAGATATCAAGGTTTTGGAGAATCATATTTAGTTCAATGGCTTTTGCTGAAACAATTTTAAAGATAGATTTGTGATGTAAAGTACAGAAGAATGCATGGTAGAAAGTTCTGCCTCTCATAAGTGATTTATGTCTCCTGTCTCCAACTCCATTACCTTGTCTTGTGCATTCATAGTAGGTTTACTTATGACACTTCTGAACAACGTACGGTCCTCTGTACATTGTGCATAGCATAGTGTTCAAACACAAACATTTGTAGCCATTACTGAGTGTGTCAAGTTCTGCTGTCTTGTATTTGTCGGTGTGATAGTAAAGATGTGAAGAATGTCTTTTACCTTCTATATATGACAAAAGTGAAACTAGTAACCTGAAATGACTGGTTCCGATAATGTGAATTATTTGCAATGCTGATGTATATAAGTTAAATGTTTTTAACAATTGTCTTCATTGTTATGCTAACAATGATACTCTCTGTGTTCGTTCTAGTTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAG--AAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAAGTAGTAGTACTTTTTTTTAAAATGTAGTAGCTGGATGCTGAAATTAGAAGAATATTGAATTTTATATTGACATTTAAGCTTTAGATTCAATGAGAAATTGATCAAAATAAACCTTCATCTCTTGCTGCTCGGACTCATTAAAAATTTTGCTAGGTGTGTGTCAGATTCTCCTAAAGTAGTGTATTTTGGAGGATATGATATTGTGATAACAATTGTGGACAGTTTTGGAGAGTTTGAGTAATATTGGATATTTATAAAAGGTGTCATTCGACATAACGCTTCGATTAAATCTTGATTCTAAATAAACTTGATTTTGAATTTTGATGATAAAAACTATTGGTTCTCACTGACCCTTTGGTCCAAGCAATCAAAGTGGAAAAAAGATTTAAATAAAATAACACATCTAAGTGGTTTAGTTATATGAGATAATGAAGCATATCACGTGATATGTTTTTGTTTAAAGCCAAACTCCATTTTATTTTTTCATGTGGATAGTTTTCGTTGAGTATAATTATTGATAAGTATAATCAAAAGTGGTTAGTGGTCAATAAAATGAATTGAGAATCATGAGATTATACGTTTAAATCTCCAATGCGCCGCCATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTCGGCGCCGGGTTGACTTGATATATCAATCAAAAAACAATTATTAATATAGATATTTTACCACACTACTCTACCAATTAATTAATGTTTAGTGTATTATTGAGTCTTGAAAAATGATATGGAAAGTAATATCTAATACTATGAGTAAAACATGAAAAAATATAATTATACTTTTTTAATATGTCAAAAGTGACCAATAAAAATAATTTTTTTTTTTTGGAAAAAATGTCAAAGCAAAACTGAAGAGGGAGTGATTATTACCTGCTATATATAATATATGATTAAATTATTTTATATACATCTAAAATGAAAATTACTTGTCAAAATTTTCTTTTACAATTTGGTACCTACTTTTTTAGAATATGTGAATAGACTCAAAAAAAATTAAATGTCTTTCCTTGTAGATGACTTCAAATTAAATAATCATTAGATTTTCTTGAATAATAATACCCAAGTTGTCAATCTAGTCAACACACAAATTTGAAGAAGCAACCTCTACAATAATTAATAAAATAATTTATATATACCTCTAGCAGCCTTAAAAACTATATTTAAAAAAAAATAAAATCTAACACACAAAAAA</genome_strand>
        <mrna_strand>GATTACATCCATGTAGACAGACCAACAGTTGATGAAGATTATAATGAAGATCGCGTGAAGATACCCTGGGAGAATGAAATGAGG................................................................................................GCTGCCAAAAGAGCAAGGGATGATGAAGCTCCTAACCATCAAGAGGATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAGCAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTGCAGTTTCCAGAGAAAAAAGTTAAAAAGTCCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCAGAAGTTTCTTTGGATTTGTACAGTTCAAAACAACGTATAATGCTCTCATCAGTATACCAGCATGTGAAATTAAAGAACTTTGGTCTTTGTACAGTAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411809" ref_strand="-" ref_description="SGN-E411809 [STM-15-E8]">
      <seq>atgatgaagctcttaaccatcaagaggatgtgaggaaagcatcagtgactagaatgccatcccagacaaatcatcagataaggtctgctgcagagatgtcatctagctttagtgaagatgacaaagcagaagaaaccagttcttttgaggattgagagatttgcagtttccagagaaaaaagttaaaaagtccagaagctgtagtgattcttgaattcctatttgttgatagcagaagtttctttggatttgtacagttcaaaacaacgtataatgctctcatcagtataccagcatgtgaaattaaagaactttggtctttgtacagtaatagtagtagtactttttttcaaatgtagtagctgaatgcagaaattagaagattttttttgagttttatattgacatttgagctttagatgcaatgagaaattgatcataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129111" stop="127500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128811" g_stop="128730" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128159" g_stop="127792" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="454" r_length="372" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E411809" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411809" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128811" e_stop="128730"/>
          <exon e_start="128159" e_stop="127792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAGGTTTGGCCATGTTTAAGACCTTGGTTTCTAATCTAATGTGCATCTATATTTGAACGTATATGGCTCTATCTTGAGATGTTTGACTGAGATATCAAGGTTTTGGAGAATCATATTTAGTTCAATGGCTTTTGCTGAAACAATTTTAAAGATAGATTTGTGATGTAAAGTACAGAAGAATGCATGGTAGAAAGTTCTGCCTCTCATAAGTGATTTATGTCTCCTGTCTCCAACTCCATTACCTTGTCTTGTGCATTCATAGTAGGTTTACTTATGACACTTCTGAACAACGTACGGTCCTCTGTACATTGTGCATAGCATAGTGTTCAAACACAAACATTTGTAGCCATTACTGAGTGTGTCAAGTTCTGCTGTCTTGTATTTGTCGGTGTGATAGTAAAGATGTGAAGAATGTCTTTTACCTTCTATATATGACAAAAGTGAAACTAGTAACCTGAAATGACTGGTTCCGATAATGTGAATTATTTGCAATGCTGATGTATATAAGTTAAATGTTTTTAACAATTGTCTTCATTGTTATGCTAACAATGATACTCTCTGTGTTCGTTCTAGTTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAG--AAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAAGTAGTAGTACTTTTTTTTAAAATGTAGTAGCTGGATGCTGAAATTAGAAGA---ATATTGAATTTTATATTGACATTTAAGCTTTAGATTCAATGAGAAATTGATCAAAATAAACCTTCATC</genome_strand>
        <mrna_strand>ATGATGAAGCTCTTAACCATCAAGAGGATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAGCAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTGCAGTTTCCAGAGAAAAAAGTTAAAAAGTCCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCAGAAGTTTCTTTGGATTTGTACAGTTCAAAACAACGTATAATGCTCTCATCAGTATACCAGCATGTGAAATTAAAGAACTTTGGTCTTTGTACAGTAATAGTAGTAGTAC-TTTTTTTCAAATGTAGTAGCTGAATGCAGAAATTAGAAGATTTTTTTTGAGTTTTATATTGACATTTGAGCTTTAGATGCAATGAGAAATTGATCATAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354912" ref_strand="+" ref_description="SGN-E354912 [cTOS-19-G15]">
      <seq>aaattttgtccataagggaagtaagcaacattattgtccagagagagagctctccagtacagttgaaaaggattacatccatgtggaccgaccaaccgttgatgaagattataatgaagatcatgtgaagatacagtgggagaaggaaatgagggttgccaaaagagcaacggatgaggaagctcctaaccatcaagagtatgtgaggaaagcatcagtgactagaatgccatcccagacaaatcatcagataagttttgctgcagagatgtcatctagctttagtgaagatgacaaaacagaagaaaccagttcttttgaggattgagagatttacagtttccagagaaaagttaaaaagtgcagaagctgtagtgattcttgaattcctatttgttgatagcttaagttactttggatttgtacagttcaaaacaacttataatgctctcatcagtacaccagcatgtgaaattgaacaactttggtctctgtacagtaaaagtagtagtacttttttttaaaatgtagtagctggatgctgaaattagaagaatattgaattttatattgacatttaagctttagatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129458" stop="127514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129158" g_stop="129089" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129010" g_stop="128927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="154" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128830" g_stop="128730" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="255" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128159" g_stop="127814" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="600" r_length="345" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E354912" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129158" e_stop="129089"/>
          <exon e_start="129010" e_stop="128927"/>
          <exon e_start="128830" e_stop="128730"/>
          <exon e_start="128159" e_stop="127814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAGGTATAATGCCATTCTTGTGCTGTGCTTCTTTGTTATCCAGCTATATCTAGATAATTTTACCTTGATTGTGATATATAGGATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGGGTAAGCTTTTCAGCTCATGTTAGTATGTTACTATTTGTAATTCCTTTAGATAAAGATATGGTCATTTGAACTCTTTGAATACGAAATATTTTGAAGGTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAGGTTTGGCCATGTTTAAGACCTTGGTTTCTAATCTAATGTGCATCTATATTTGAACGTATATGGCTCTATCTTGAGATGTTTGACTGAGATATCAAGGTTTTGGAGAATCATATTTAGTTCAATGGCTTTTGCTGAAACAATTTTAAAGATAGATTTGTGATGTAAAGTACAGAAGAATGCATGGTAGAAAGTTCTGCCTCTCATAAGTGATTTATGTCTCCTGTCTCCAACTCCATTACCTTGTCTTGTGCATTCATAGTAGGTTTACTTATGACACTTCTGAACAACGTACGGTCCTCTGTACATTGTGCATAGCATAGTGTTCAAACACAAACATTTGTAGCCATTACTGAGTGTGTCAAGTTCTGCTGTCTTGTATTTGTCGGTGTGATAGTAAAGATGTGAAGAATGTCTTTTACCTTCTATATATGACAAAAGTGAAACTAGTAACCTGAAATGACTGGTTCCGATAATGTGAATTATTTGCAATGCTGATGTATATAAGTTAAATGTTTTTAACAATTGTCTTCATTGTTATGCTAACAATGATACTCTCTGTGTTCGTTCTAGTTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAGAAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAAGTAGTAGTACTTTTTTTTAAAATGTAGTAGCTGGATGCTGAAATTAGAAGAATATTGAATTTTATATTGACATTTAAGCTTTAGATTCAATGAGAAA</genome_strand>
        <mrna_strand>AAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG..............................................................................GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG................................................................................................GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAGAAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAAGTAGTAGTACTTTTTTTTAAAATGTAGTAGCTGGATGCTGAAATTAGAAGAATATTGAATTTTATATTGACATTTAAGCTTTAGA-TCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237444" ref_strand="+" ref_description="SGN-E237444 [cLED-19-C13]">
      <seq>aaagattctggaagagaagtggcagttgatggcagatgcaactataagcttatggctaaacatgatggtgcagccaatcctggctctagtggtggttttcaaagttcctacattggaaaagtcaacagggagcaggtgactgctaggttcactagccgtgatggcttgagccttgacattgcggaggaggaagatcttcaatgcaagccttcaaattttgtccataagggaagtaagcaacattattgtccagagagagagctctccagtacagttgaaaaggattacatccatgtggaccgaccaaccgttgatgaagattataatgaagatcatgtgaagatacagtgggagaaggaaatgagggttgccaaaagagcaacggatgaggaagctcctaaccatcaagagtatgtgaggaaagcatcagtgactagaatgccatcccagacaaatcatcagataagttttgctgcagagatgtcatctagctttagtgaagatgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129670" stop="127816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129370" g_stop="129089" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129010" g_stop="128927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="366" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128830" g_stop="128730" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="467" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128159" g_stop="128116" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="511" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E237444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129370" e_stop="129089"/>
          <exon e_start="129010" e_stop="128927"/>
          <exon e_start="128830" e_stop="128730"/>
          <exon e_start="128159" e_stop="128116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAGGTATAATGCCATTCTTGTGCTGTGCTTCTTTGTTATCCAGCTATATCTAGATAATTTTACCTTGATTGTGATATATAGGATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGGGTAAGCTTTTCAGCTCATGTTAGTATGTTACTATTTGTAATTCCTTTAGATAAAGATATGGTCATTTGAACTCTTTGAATACGAAATATTTTGAAGGTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAGGTTTGGCCATGTTTAAGACCTTGGTTTCTAATCTAATGTGCATCTATATTTGAACGTATATGGCTCTATCTTGAGATGTTTGACTGAGATATCAAGGTTTTGGAGAATCATATTTAGTTCAATGGCTTTTGCTGAAACAATTTTAAAGATAGATTTGTGATGTAAAGTACAGAAGAATGCATGGTAGAAAGTTCTGCCTCTCATAAGTGATTTATGTCTCCTGTCTCCAACTCCATTACCTTGTCTTGTGCATTCATAGTAGGTTTACTTATGACACTTCTGAACAACGTACGGTCCTCTGTACATTGTGCATAGCATAGTGTTCAAACACAAACATTTGTAGCCATTACTGAGTGTGTCAAGTTCTGCTGTCTTGTATTTGTCGGTGTGATAGTAAAGATGTGAAGAATGTCTTTTACCTTCTATATATGACAAAAGTGAAACTAGTAACCTGAAATGACTGGTTCCGATAATGTGAATTATTTGCAATGCTGATGTATATAAGTTAAATGTTTTTAACAATTGTCTTCATTGTTATGCTAACAATGATACTCTCTGTGTTCGTTCTAGTTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAA</genome_strand>
        <mrna_strand>AAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG..............................................................................GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG................................................................................................GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242717" ref_strand="+" ref_description="SGN-E242717 [cLED-31-G15]">
      <seq>aaagattctggaagagaagtggcagttgatggcagatgcaactataagcttatggctaaacatgatggtgcagccaatcctggctctagtggtggttttcaaagttcctacattggaaaagtcaacagggagcaggtgactgctaggttcactagccgtgatggcttgagccttgacattgcggaggaggaagatcttcaatgcaagccttcaaattttgtccataagggaagtaagcaacattattgtccagagagagagctctccagtacagttgaaaaggattacatccatgtggaccgaccaaccgttgatgaagattataatgaagatcatgtgaagatacagtgggagaaggaaatgagggttgccaaaagagcaacggatgaggaagctcctaaccatcaagagtatgtgaggaaagcatcagtgactagaatgccatcccagacaaatcatcagataagttttgctgcagagatgtcatctagctttagtgaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129670" stop="127822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129370" g_stop="129089" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129010" g_stop="128927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="366" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128830" g_stop="128730" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="467" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128159" g_stop="128122" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="505" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E242717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129370" e_stop="129089"/>
          <exon e_start="129010" e_stop="128927"/>
          <exon e_start="128830" e_stop="128730"/>
          <exon e_start="128159" e_stop="128122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAGGTATAATGCCATTCTTGTGCTGTGCTTCTTTGTTATCCAGCTATATCTAGATAATTTTACCTTGATTGTGATATATAGGATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGGGTAAGCTTTTCAGCTCATGTTAGTATGTTACTATTTGTAATTCCTTTAGATAAAGATATGGTCATTTGAACTCTTTGAATACGAAATATTTTGAAGGTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAGGTTTGGCCATGTTTAAGACCTTGGTTTCTAATCTAATGTGCATCTATATTTGAACGTATATGGCTCTATCTTGAGATGTTTGACTGAGATATCAAGGTTTTGGAGAATCATATTTAGTTCAATGGCTTTTGCTGAAACAATTTTAAAGATAGATTTGTGATGTAAAGTACAGAAGAATGCATGGTAGAAAGTTCTGCCTCTCATAAGTGATTTATGTCTCCTGTCTCCAACTCCATTACCTTGTCTTGTGCATTCATAGTAGGTTTACTTATGACACTTCTGAACAACGTACGGTCCTCTGTACATTGTGCATAGCATAGTGTTCAAACACAAACATTTGTAGCCATTACTGAGTGTGTCAAGTTCTGCTGTCTTGTATTTGTCGGTGTGATAGTAAAGATGTGAAGAATGTCTTTTACCTTCTATATATGACAAAAGTGAAACTAGTAACCTGAAATGACTGGTTCCGATAATGTGAATTATTTGCAATGCTGATGTATATAAGTTAAATGTTTTTAACAATTGTCTTCATTGTTATGCTAACAATGATACTCTCTGTGTTCGTTCTAGTTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATG</genome_strand>
        <mrna_strand>AAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG..............................................................................GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG................................................................................................GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273368" ref_strand="+" ref_description="SGN-E273368 [cLEN-3-B2]">
      <seq>caattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagcttatggctaaacatgatggtgcagccaatcctggctctagtggtggttttcaaagttcctacattggaaaagtcaacagggagcaggtgactgctaggttcactagccgtgatggcttgagccttgacattgcggaggaggaagatcttcaatgcaagccttcaaattttgtccataagggaagtaagcaacattattgtccagagagagagctctccagtacagttgaaaaggattacatccatgtggaccgaccaaccgttgatgaagattataatgaagatcatgtgaagatacagtgggagaaggaaatgagggttgccaaaagagcaacggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="129863" stop="128509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129550" g_stop="129089" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="475" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129010" g_stop="128927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="559" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128830" g_stop="128809" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="581" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E273368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129550" e_stop="129089"/>
          <exon e_start="129010" e_stop="128927"/>
          <exon e_start="128830" e_stop="128809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAGGTATAATGCCATTCTTGTGCTGTGCTTCTTTGTTATCCAGCTATATCTAGATAATTTTACCTTGATTGTGATATATAGGATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGGGTAAGCTTTTCAGCTCATGTTAGTATGTTACTATTTGTAATTCCTTTAGATAAAGATATGGTCATTTGAACTCTTTGAATACGAAATATTTTGAAGGTTGCCAAAAGAGCAACGGATG</genome_strand>
        <mrna_strand>GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG..............................................................................GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG................................................................................................GTTGCCAAAAGAGCAACGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240897" ref_strand="+" ref_description="SGN-E240897 [cLED-24-G9]">
      <seq>gcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagcttatggctaaacatgatggtgcagccaatcctggctctagtggtggttttcaaagttcctacattggaaaagtcaacagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131595" stop="128938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131295" g_stop="131262" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="114" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129238" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="427" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E240897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131295" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGC</genome_strand>
        <mrna_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243866" ref_strand="+" ref_description="SGN-E243866 [cLED-35-A18]">
      <seq>aaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctctaccgccaggatggtccactacttggtgtagtatttgaccagcttccacagggtgcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagcttatggctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131701" stop="129010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131401" g_stop="131262" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="220" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129310" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="461" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E243866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131401" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAAC</genome_strand>
        <mrna_strand>AAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241035" ref_strand="+" ref_description="SGN-E241035 [cLED-24-P2]">
      <seq>aaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctctaccgccaggatggtccactacttggtgtagtatttgaccagcttccacagggtgcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131701" stop="129018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131401" g_stop="131262" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="220" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129318" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="453" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E241035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131401" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTAT</genome_strand>
        <mrna_strand>AAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239599" ref_strand="+" ref_description="SGN-E239599 [cLED-23-L3]">
      <seq>gcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131595" stop="129018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131295" g_stop="131262" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="114" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129318" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="347" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E239599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131295" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTAT</genome_strand>
        <mrna_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231174" ref_strand="+" ref_description="SGN-E231174 [cLED-5-E6]">
      <seq>gcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgggcggaactcgtcgatagagatgcgcaaagattctggaagagaagtggcagttgatggcagatgcaactataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131595" stop="129022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131295" g_stop="131262" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="114" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129322" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="343" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E231174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131295" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGC</genome_strand>
        <mrna_strand>GCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250343" ref_strand="+" ref_description="SGN-E250343 [cLEG-6-A19]">
      <seq>aaaagtgaaagcaaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctctaccgccaggatggtccactacttggtgtagtatttgaccagcttccacagggtgcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagatttcactaaagtcgacaagcgatccaattcatgcatagggtatggatccatttccaagataaactctcatggctctgatttggatggtgcaaacttaaaaaagtcaaacaagtcttctcatcctgaatattacatcaaccaaaagcctgatcggaattcctctatgcacaatggtgatcggtactatcttgtgcggaactcgtcgatagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="131713" stop="129074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131413" g_stop="131262" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129550" g_stop="129374" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="409" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E250343" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131413" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
          <exon e_start="129550" e_stop="129374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATAGTAAGTGGATCTTGTGCAACTTGATCTTAGTGATTTGGTAAACTTTGATTTCATAGTTCTCAACCATGAACTTACTGCATTATATACAGGAGTGCTTGATTTGTGTCAAGTTGATAATTAATTGAATTTAGACTAGGAATTTTATGTATATCGTTTACTCTTGTGACAACAGTTGCTGATATACTTCAGTCAACTGATCTTTTAAATGAATAATGTGAAGGAAGTACCAATCATAGAACTGTGGTATAGCAACACTACACAAAAGAATCATGTAGGGCTATTAATTTGAACTTCTCTTTTGTTTAGATATTTTGCATTGGACCATGGATATACCTTTTTTAAAAAAGAATCATCCACCGTGGAGGAAAACTTGTTTTAGCGAGACCTTACCTATCTCGAGGTTTTAAATATCTTTACATTTTTCTACTGGCTCAAATGTGAATGGGTTGAGATAAAATTGTGCTTTATTTAGTGCCTCCTGCCCTACCATATCTAGATCTTACAATCAAGGTTAAAGCACTTAAGTCAATCTGTTGAATTACCTACTCTGCTTTTACATTGGTCCAATAGGGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATG</genome_strand>
        <mrna_strand>AAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGTGCGGAACTCGTCGATAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554286" ref_strand="+" ref_description="SGN-E554286 [cTSC-3-M9]">
      <seq>gaataatgaagacacctgcacaacttgaaggtcttgagaaattctatcaggagcataagtatcctacagagtcaatgaaattggaggtggcacagtcattgggattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctcatggaggacacaccttcaggaagtagctcttccttacgtgatgcacgtttttcacaaaacgtagaatcatttgatatggcaacttcaagatacctaccaggtaatgaacctactgatctcaagtgtgtgaaaccaaggactggcccatcagggtatctaaaagtgaaagcaaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctctaccgccaggatggtccactacttggtgtagtatttgaccagcttccacagggtgcttttgaatcatcagtgcaaactcctgttgacgaccctatatattctggagaacctgttccagatcttacaccagattttcactaaagtcgacaagcgatccaattcatgcataggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="132355" stop="129820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132055" g_stop="132005" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131909" g_stop="131262" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="699" r_length="648" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130200" g_stop="130121" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="780" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E554286" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132055" e_stop="132005"/>
          <exon e_start="131909" e_stop="131262"/>
          <exon e_start="130200" e_stop="130121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGGGTAACAACTCTTACTAACTTTTTCTTGTTTTGCAATAAGCTTCTATGCTGTATGTTATTTCAAATATAACTATGAGAGAACTTGCAAAATTTCAGAGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACGGTGAGTTAAAATGGTTGCTTCTCTTTCATTGTTGACCTTTTTTAAGTCTTTTTTCATCCATTCATTTCATTGACTTGTGAGTGAGCATGCCTTTCTCTCCCAGAAGAAGCTTTGTGTCCTTAAAGCATGCTAATTCTGTTCCTACTTAGTTTGTTTTTTTTGAGAACTAATTCAGTCCCTATTTAGTTTAGCTTTTGATTTTAGATTTTGTTGTGCTTCTATACAACTAAAACACTTCTCTCATCATATGGCTCTGTGAAAGTTTATGTACAGTTTCGTAAGGAACAACATATTTTTGTATATAGAACAGTTCTTTTTTATGTTTAAAAAATAATTATGACAACAGTGTTTATTTTATAAGAAATGCTAAAATGATCCTGATTACTTAACAAAATCAGCTCATATTGGCAATATTGTTAAATTTGGATTACGACAAAAGCTGATTCTGTTCTTTAGGTTTTATAAGAGCGGTAATTATGAATTTAATGGATTAGGGTCCTCTTGTCTCCTATCTGCAAGTTGTGAAGTCCCTTTTTCCATTTTCTGTTGATACTATGGGGTTTATTTTGTGCTAGTCTTTTTATTGAGGTCATCTTAAACACATGCTTGTATATCCAGAATTACGTGTTTGTCTGCTCTTAATTGAGTTGGCAGAACAAAGCTGAGAACCTTGTAAACTTTAATTTGGTTCATATCTTTTGAGAGGAATAAATTAAAATTTTAATAATATTTTATCAACTTCGATGTGCCCATTATCGTAATTTTGTGTTGATTGAAACTTTCACGTACACAAGTACATGGTGTGTAACATCCTCTATTATTCAGATTAATTTTTGTTTAGATGTAAAAAGAGTGAGGGTTATTTGTTGCTGAATGAGTGAAGTTCTTTTTGCCATGTCTAATACCACTTCTACTCAGCATTGTACTTCATTTTCAAGTTTTTATGCTTGAGCATGCATCTTTTTTTTTGGTTTTTGCATCTCATTGTGGATTCTTAAAGTGTAGTTTAGTGTCTAATACAGAGAGTTGCTGACTTTTACTTTCATATTAATGTTTGTCAGACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGA-TTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA</genome_strand>
        <mrna_strand>GAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG...............................................................................................AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276726" ref_strand="+" ref_description="SGN-E276726 [cLEN-14-P19]">
      <seq>cggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctcatggaggacacaccttcaggaagtagctcttccttacgtgatgcacgtttttcacaaaacgtagaatcatttgatatggcaacttcaagatacctaccaggtaatgaacctactgatctcaagtgtgtgaaaccaaggactggcccatcagggtatctaaaagtgaaagcaaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctctaccgccaggatggtccactacttggtgtagtatttgaccagcttccacagggtgcttttgaatcatcagtgcaaactcctgttgacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="132117" stop="130962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131817" g_stop="131262" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E276726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131817" e_stop="131262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG</genome_strand>
        <mrna_strand>CGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275535" ref_strand="+" ref_description="SGN-E275535 [cLEN-10-K22]">
      <seq>atcctacagagtcaatgaaattggaggtggcacagtcattgggattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctcatggaggacacaccttcaggaagtagctcttccttacgtgatgcacgtttttcacaaaacgtagaatcatttgatatggcaacttcaagatacctaccaggtaatgaacctactgatctcaagtgtgtgaaaccaaggactggcccatcagggtatctaaaagtgaaagcaaaggtagaaaatgcttcaattactgctgtgaagaggcaattgggaagtctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="132200" stop="131048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131900" g_stop="131348" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E275535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131900" e_stop="131348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTA</genome_strand>
        <mrna_strand>ATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265667" ref_strand="+" ref_description="SGN-E265667 [cLEI-14-H8]">
      <seq>ggaaactcaaggcaagaataatgaagacacctgcacaacttgaaggtcttgagaaattctatcaggagcataagtatcctacagagtcaatgaaattggaggtggcacagtcattgggattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctcatggaggacacaccttcaggaagtagctcttccttacgtgatgcacgtttttcacaaaacgtagaatcatttgatatggcaacttcaagatacctaccaggtaatgaacctactgatctcaagtgtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="132370" stop="131141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132070" g_stop="132005" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131909" g_stop="131441" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="535" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E265667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132070" e_stop="132005"/>
          <exon e_start="131909" e_stop="131441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGGGTAACAACTCTTACTAACTTTTTCTTGTTTTGCAATAAGCTTCTATGCTGTATGTTATTTCAAATATAACTATGAGAGAACTTGCAAAATTTCAGAGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAA</genome_strand>
        <mrna_strand>GGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG...............................................................................................AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333201" ref_strand="+" ref_description="SGN-E333201 [cTOD-20-O13]">
      <seq>ccctatagtttttgtattcttcccctctttagttcaccaaatttcttcccttttttgcttcctgaaattagtaatcagtgcgatatgcacaaaggggcgcttcaatcttcgcattctccgctgatttggggttcgaattttgagttaataagtaaaaggggttaacgaaaaacccagagaaatttgacgagagatcatggaagattcacatgaaatacattctgaagatgataaaggtcatgttgggaaactcaaggcaagaataatgaagacacctgcacaacttgaaggtcttgagaaattctatcaggagcataagtatcctacagagtcaatgaaattggaggtggcacagtcattgggattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctcatggangacacaccttcaggaagtagctcttccttacgtgatgcacgtttttcacaaaacgtagaatcatttgatatggcaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133575" stop="131186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133275" g_stop="133192" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133191" i_stop="133098" i_length="94">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133097" g_stop="132979" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="203" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132112" g_stop="132005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="311" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131909" g_stop="131486" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="735" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E333201" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133275" e_stop="133192"/>
          <exon e_start="133097" e_stop="132979"/>
          <exon e_start="132112" e_stop="132005"/>
          <exon e_start="131909" e_stop="131486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATAGTTTTTGTATTCTTCCCCTCTTTAGTTCACCAAATTTCTTCCCTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAGGTATCGTTTTTTTTTAAAAAAAAGTTATCGTTTTTTCCTTTGTTATTAGCTAGCTAGATCAATTTTGGAATCTGAGTATGTTACATGTTGTTCAATTTAGTTTCCGTTTCATGGAAAGTTACAATCTTGGGTGCTGTTTTGGAATCTTGAATTTGGGTTTTAGAGGTCTAAGTTTCATCAGATTATATTGCTATTTTTTTAAATTTCAAGCCAGCTTAAGTGCAACTTGACTAGTTACATGGGTTAGTGGCTGCTGCTACCTTCCAACGATACATGTATAGGGTAACTCTGTCTAGAAATTACATAGTGTTTTTGCCTCTGCTGACTGCTGGAATTTGAACTTAAGATCTCATGGTTCTTAATTCCATTTTATTGACCATGAGGCCACACTTTTGGGGTGCTATTTTAGCTTGCTACTCCCGGCTTTGACTTGACGTAGAGTTTATGGAAGTAAAGAAAGACTTGTGAATTTGTGGTGGTCTTAAACTAAAGATATGTAGGTAGTACCAAAATATCCATTAATTTTGTGGACTTACACTTGTCATCTAGAAAGTTAGAATTAATGAGTACCCAGGAAAAGGAAGTAAGATAAATAAATTGAAAAGGAGGGAGCATAAGTTACGCCTGGTACTATGGATGACTACTTTTCTGCATCGTGGTTAGTTGTGGATTTTGCTTTCCACCCTAATCAACTAGATAGGTTTTTTTCCTTTGGTTTGAAAATTAGATCTCTCAAATAATGCTTATGAATTTGTTCAATTTATAGTTGGACCTACTGGTGTTGGAACTTGGAACAATTGATTGTGATCTTTATTTCCAGCTTGTGTCATTGTTGGCTTTATTAATTTCTTTTATCCATACTCTAGATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGGGTAACAACTCTTACTAACTTTTTCTTGTTTTGCAATAAGCTTCTATGCTGTATGTTATTTCAAATATAACTATGAGAGAACTTGCAAAATTTCAGAGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTC</genome_strand>
        <mrna_strand>CCCTATAGTTTTTGTATTCTTCCCCTCTTTAGTTCACCAAATTTCTTCCCTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGAT..............................................................................................ATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG...............................................................................................AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGANGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274833" ref_strand="+" ref_description="SGN-E274833 [cLEN-13-P19]">
      <seq>cggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcgggaagttgagagtagaagattaactgggccagaagtctcaactgcggatgtgacgcgtgaagctgacactaggtatagagcagagtctaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="132117" stop="131272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131817" g_stop="131572" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E274833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131817" e_stop="131572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTC</genome_strand>
        <mrna_strand>CGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411808" ref_strand="+" ref_description="SGN-E411808 [STM-15-E8]">
      <seq>cttttttgcttcctgaaattagtaatcagtgagatgtatgtcaattttgagttatagatgatgcttatacactctctttcttctctctgtacatgtatttatgctccaatttgttctttgtatacatatgcacacaagggcggttcaatcttcgcattctccgctgatttggggttcgaattttgagttaataagcaaaaggggttaagaaaaaacccagagaaattgacgggagatcatggaagattcacgtgaaatacattctgaagatgataaaggtcatgttgggaaactcaaggcaagaatactcaagacgcctgcacaaattgaaggtttagagaaattctacgaggagcataagtatcctacagagtcaatgaaattggaggtggcacagtcattatgattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctattaagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagtggcgtcattcaggaccgtggcagcggttttaggcaggattcttgtggaagtactaagcaaggcgatgataagtattttgatcatcgagaagttgagagtagaagaataactgcgccagaagtatcagctgcagatgtgacacgtgaagttgacactaggtatagagcagagtctaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133526" stop="131273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133226" g_stop="132979" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132112" g_stop="132005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="353" r_length="108" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131909" g_stop="131573" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="690" r_length="337" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E411808" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133226" e_stop="132979"/>
          <exon e_start="132112" e_stop="132005"/>
          <exon e_start="131909" e_stop="131573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAGGTATCGTTTTTTTTTAAAAAAAAGTTATCGTTTTTTCCTTTGTTATTAGCTAGCTAGATCAATTTTGGAATCTGAGTATGTTACATGTTGTTCAATTTAGTTTCCGTTTCATGGAAAGTTACAATCTTGGGTGCTGTTTTGGAATCTTGAATTTGGGTTTTAGAGGTCTAAGTTTCATCAGATTATATTGCTATTTTTTTAAATTTCAAGCCAGCTTAAGTGCAACTTGACTAGTTACATGGGTTAGTGGCTGCTGCTACCTTCCAACGATACATGTATAGGGTAACTCTGTCTAGAAATTACATAGTGTTTTTGCCTCTGCTGACTGCTGGAATTTGAACTTAAGATCTCATGGTTCTTAATTCCATTTTATTGACCATGAGGCCACACTTTTGGGGTGCTATTTTAGCTTGCTACTCCCGGCTTTGACTTGACGTAGAGTTTATGGAAGTAAAGAAAGACTTGTGAATTTGTGGTGGTCTTAAACTAAAGATATGTAGGTAGTACCAAAATATCCATTAATTTTGTGGACTTACACTTGTCATCTAGAAAGTTAGAATTAATGAGTACCCAGGAAAAGGAAGTAAGATAAATAAATTGAAAAGGAGGGAGCATAAGTTACGCCTGGTACTATGGATGACTACTTTTCTGCATCGTGGTTAGTTGTGGATTTTGCTTTCCACCCTAATCAACTAGATAGGTTTTTTTCCTTTGGTTTGAAAATTAGATCTCTCAAATAATGCTTATGAATTTGTTCAATTTATAGTTGGACCTACTGGTGTTGGAACTTGGAACAATTGATTGTGATCTTTATTTCCAGCTTGTGTCATTGTTGGCTTTATTAATTTCTTTTATCCATACTCTAGATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGGGTAACAACTCTTACTAACTTTTTCTTGTTTTGCAATAAGCTTCTATGCTGTATGTTATTTCAAATATAACTATGAGAGAACTTGCAAAATTTCAGAGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCT</genome_strand>
        <mrna_strand>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGAGATGTATGTCAATTTTGAGTTATAGATGATGCTTATACACTCTCTTTCTTCTCTCTGTACATGTATTTATGCTCCAA--TTTGTTCTTTGTATACATATGCACACAAGGGCGGTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGCAAAAGGGGTTAAGAAAAAACCCAGAGAAA-TTGACGGGAGATCATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGTGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATACTCAAGACGCCTGCACAAATTGAAGGTTTAGAGAAATTCTACGAGG...............................................................................................AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTATGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATTAAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGTGGCGTCATTCAGGACCGTGGCAGCGGTTTTAGGCAGGATTCTTGTGGAAGTACTAAGCAAGGCGATGATAAGTATTTTGATCATCGAGAAGTTGAGAGTAGAAGAATAACTGCGCCAGAAGTATCAGCTGCAGATGTGACACGTGAAGTTGACACTAGGTATAGAGCAGAGTCTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316983" ref_strand="+" ref_description="SGN-E316983 [cTOA-27-N12]">
      <seq>ttcaactctctcccctatagtttttgtattcttcccctctttagttcaccaaatttcttcccttttttgcttcctgaaattagtaatcagtgcgatatgcacaaaggggcgcttcaatcttcgcattctccgctgatttggggttcgaattttgagttaataagtaaaaggggttaacgaaaaacccagagaaatttgacgagagatcatggaagattcacatgaaatacattctgaagatgataaaggtcatgttgggaaactcaaggcaagaataatgaagacacctgcacaacttgaaggtcttgagaaattctatcaggagcataagtatcctacagagtcaatgaaattggaggtggcacagtcattgggattaacagaaaagcaggtttctgggtggttttgtcataggcggttgaaagacaagaggctatcgagtcgggaaacaaatgcaaaaggaagacaagatcgttcaagcggtgtcattcaggaccgtggcagcggttttagacaggattcttgtggaagtactaagcaaggagatgataaatattttgatcatcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133587" stop="131363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133287" g_stop="133192" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133191" i_stop="133098" i_length="94">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133097" g_stop="132979" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="215" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132112" g_stop="132005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="323" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131909" g_stop="131663" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="570" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E316983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133287" e_stop="133192"/>
          <exon e_start="133097" e_stop="132979"/>
          <exon e_start="132112" e_stop="132005"/>
          <exon e_start="131909" e_stop="131663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTCTCCCCTATAGTTTTTGTATTCTTCCCCTCTTTAGTTCACCAAATTTCTTCCCTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAGGTATCGTTTTTTTTTAAAAAAAAGTTATCGTTTTTTCCTTTGTTATTAGCTAGCTAGATCAATTTTGGAATCTGAGTATGTTACATGTTGTTCAATTTAGTTTCCGTTTCATGGAAAGTTACAATCTTGGGTGCTGTTTTGGAATCTTGAATTTGGGTTTTAGAGGTCTAAGTTTCATCAGATTATATTGCTATTTTTTTAAATTTCAAGCCAGCTTAAGTGCAACTTGACTAGTTACATGGGTTAGTGGCTGCTGCTACCTTCCAACGATACATGTATAGGGTAACTCTGTCTAGAAATTACATAGTGTTTTTGCCTCTGCTGACTGCTGGAATTTGAACTTAAGATCTCATGGTTCTTAATTCCATTTTATTGACCATGAGGCCACACTTTTGGGGTGCTATTTTAGCTTGCTACTCCCGGCTTTGACTTGACGTAGAGTTTATGGAAGTAAAGAAAGACTTGTGAATTTGTGGTGGTCTTAAACTAAAGATATGTAGGTAGTACCAAAATATCCATTAATTTTGTGGACTTACACTTGTCATCTAGAAAGTTAGAATTAATGAGTACCCAGGAAAAGGAAGTAAGATAAATAAATTGAAAAGGAGGGAGCATAAGTTACGCCTGGTACTATGGATGACTACTTTTCTGCATCGTGGTTAGTTGTGGATTTTGCTTTCCACCCTAATCAACTAGATAGGTTTTTTTCCTTTGGTTTGAAAATTAGATCTCTCAAATAATGCTTATGAATTTGTTCAATTTATAGTTGGACCTACTGGTGTTGGAACTTGGAACAATTGATTGTGATCTTTATTTCCAGCTTGTGTCATTGTTGGCTTTATTAATTTCTTTTATCCATACTCTAGATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGGGTAACAACTCTTACTAACTTTTTCTTGTTTTGCAATAAGCTTCTATGCTGTATGTTATTTCAAATATAACTATGAGAGAACTTGCAAAATTTCAGAGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGA</genome_strand>
        <mrna_strand>TTCAACTCTCTCCCCTATAGTTTTTGTATTCTTCCCCTCTTTAGTTCACCAAATTTCTTCCCTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGAT..............................................................................................ATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG...............................................................................................AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469614" ref_strand="+" ref_description="SGN-E469614 [cSTB-12-P17]">
      <seq>cttttttgcttcctgaaattagtaatcagtgagatgtatgtcaattttgagttatagatgatgcttatacactctctttcttctctctgtacatgtatttatgctccaatttgttctttgtatacatatgcacacaagggcggttcaatcttcgcattctccgctgatttggggttcgaattttgagttaataagcaaaaggggttaagaaaaaacccagagaaattgacgggagatcatggaagattcacgtgaaatacattctgaagatgataaaggtcatgttgggaaactcaaggcaagaatactcaagacgcctgcacaaattgaaggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="133526" stop="131721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133226" g_stop="132979" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132112" g_stop="132021" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="337" r_length="92" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E469614" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133226" e_stop="132979"/>
          <exon e_start="132112" e_stop="132021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAGGTATCGTTTTTTTTTAAAAAAAAGTTATCGTTTTTTCCTTTGTTATTAGCTAGCTAGATCAATTTTGGAATCTGAGTATGTTACATGTTGTTCAATTTAGTTTCCGTTTCATGGAAAGTTACAATCTTGGGTGCTGTTTTGGAATCTTGAATTTGGGTTTTAGAGGTCTAAGTTTCATCAGATTATATTGCTATTTTTTTAAATTTCAAGCCAGCTTAAGTGCAACTTGACTAGTTACATGGGTTAGTGGCTGCTGCTACCTTCCAACGATACATGTATAGGGTAACTCTGTCTAGAAATTACATAGTGTTTTTGCCTCTGCTGACTGCTGGAATTTGAACTTAAGATCTCATGGTTCTTAATTCCATTTTATTGACCATGAGGCCACACTTTTGGGGTGCTATTTTAGCTTGCTACTCCCGGCTTTGACTTGACGTAGAGTTTATGGAAGTAAAGAAAGACTTGTGAATTTGTGGTGGTCTTAAACTAAAGATATGTAGGTAGTACCAAAATATCCATTAATTTTGTGGACTTACACTTGTCATCTAGAAAGTTAGAATTAATGAGTACCCAGGAAAAGGAAGTAAGATAAATAAATTGAAAAGGAGGGAGCATAAGTTACGCCTGGTACTATGGATGACTACTTTTCTGCATCGTGGTTAGTTGTGGATTTTGCTTTCCACCCTAATCAACTAGATAGGTTTTTTTCCTTTGGTTTGAAAATTAGATCTCTCAAATAATGCTTATGAATTTGTTCAATTTATAGTTGGACCTACTGGTGTTGGAACTTGGAACAATTGATTGTGATCTTTATTTCCAGCTTGTGTCATTGTTGGCTTTATTAATTTCTTTTATCCATACTCTAGATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTT</genome_strand>
        <mrna_strand>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGAGATGTATGTCAATTTTGAGTTATAGATGATGCTTATACACTCTCTTTCTTCTCTCTGTACATGTATTTATGCTCCAA--TTTGTTCTTTGTATACATATGCACACAAGGGCGGTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGCAAAAGGGGTTAAGAAAAAACCCAGAGAAA-TTGACGGGAGATCATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGTGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATACTCAAGACGCCTGCACAAATTGAAGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373202" ref_strand="-" ref_description="SGN-E373202 [TUS-32-O5]">
      <seq>acagtacaagcacaagtgatatctcctgtttggcatattgcatcatatctgccagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatctgcttgaaagtggcaactggagctcttaaatgcagctgagctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatttacaagttagtccttgttaatttcgcgctatggagttatccatcattcccgagttttgaaggttgcgtttttcccaaagggttggttccagatagatttttcgatcatcgaaaaaaacaataccataggttcctaaagatacaagacctatggagaaattatgaagagagactagcggtctgtaatttttgtacagtactatatggttttattattgtgggattaaatttataaaacttttatttttaagtatggcaacttatgtaacttgcaaattattatttgtacttccgttatgaccaaaaaataaaataaaataattgtttgtactgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="134528" stop="81155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134228" g_stop="134059" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134058" i_stop="133977" i_length="82">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133976" g_stop="133520" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="628" r_length="458" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E373202" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="134228" e_stop="134059"/>
          <exon e_start="133976" e_stop="133520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTG-TTGTANNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCCAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT..................................................................................AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATTTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTTTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTTTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTGTTTGTACTGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392644" ref_strand="+" ref_description="SGN-E392644 [TUS-36-D13](-)">
      <seq>atgaatgatatgccacgagaagctctcaatgatacagtacaagcacaagtgatatctcctgtttggcatattgcatcatatttgcaagctgcttctcttttcacattgggaagggaaaacgaggcacaaatcgcacttagagaggctgccatactcgaagaagagaaaaatgcatttgcttgaaagtggcaactggagctcttcagaaatgcagctgagctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatttacaagttagtccttgttaatttcgcgctatggagttatccatcattcccgagttttgaaggttgcgtttttcccaaagggttggttccagatagatttctcgatcatcgaaaaaaacaataccataggttcctaaagatacaagacctatggagaaattatgaagagagactagcggtctgtaatttttgtacagtactatatggttttattattgtgggattaaatttataaaacttttatttttaagtatggcaacttatgtaacttgcaaattattatttgtacttccgttatgaccaaaaaataaaataaaataattgtttgtactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="134561" stop="81158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134261" g_stop="134059" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134058" i_stop="133980" i_length="79">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133979" g_stop="133521" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="663" r_length="460" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E392644" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134261" e_stop="134059"/>
          <exon e_start="133979" e_stop="133521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTG-TTGTANNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATTTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATTTGCTTGAAAGTGGCAACTGGAGCTCTT...............................................................................CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATTTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTTTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTGTTTGTACTGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216233" ref_strand="+" ref_description="SGN-E216233 [cLEL-13-H15](-)">
      <seq>aaaatgcatctgcttgaaagtggcaactggagctcttaaatgcagctgagctatcgatatgtcacctcgtgtattcaatggttagtaaattgtgtcaatagtgaattcttttgcaacataattggatgaagttgctttgtatctacaagttagtccttgttaatttcgcgctatggagttatccatcattcccgagttctgaaggttgcgtttttcccaaagggttggttccagatagatttctcgatcatcgaaaaaaacaataccataggttcctaaagatacaagacctatggagaaattatgaagaagagactagcggtctgtaatttttgtacagtactatatggttttattattgtgggattaaatttataaaacttttatttttaagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0147G13-8DsVc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0147G13.1" temp_strand="-" temp_description="C12HBa0147G13.1  AC216398.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0147G13 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="134395" stop="81155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134095" g_stop="134059" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134058" i_stop="133977" i_length="82">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133976" g_stop="133603" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="412" r_length="375" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0147G13.1" gen_strand="-" ref_id="SGN-E216233" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0147G13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134095" e_stop="134059"/>
          <exon e_start="133976" e_stop="133603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTTGTAAGTATCATCACTACTTATTGGTTCGAATCCTCGTTTACTTGGCACATAAATCACACAAGTTCCTTTTTTTCCCCAGCAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAG-AGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAAC</genome_strand>
        <mrna_strand>AAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT..................................................................................AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>198</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="165" PGL_stop="3683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="165" e_stop="362"/>
            <exon e_start="2328" e_stop="2466"/>
            <exon e_start="2701" e_stop="2822"/>
            <exon e_start="2998" e_stop="3061"/>
            <exon e_start="3153" e_stop="3468"/>
            <exon e_start="3662" e_stop="3673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="165" e_stop="362" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="363" i_stop="2327" i_length="1965"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2328" e_stop="2466" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="2467" i_stop="2700" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2701" e_stop="2822" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.960" acc_prob="0.801">
            <gDNA_intron_boundary i_start="2823" i_stop="2997" i_length="175"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2998" e_stop="3061" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3062" i_stop="3152" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3153" e_stop="3468" e_length="316"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.821">
            <gDNA_intron_boundary i_start="3469" i_stop="3661" i_length="193"/>
          </intron>
          <exon e_serial="6" e_score="0.667">
            <gDNA_exon_boundary e_start="3662" e_stop="3673" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="194" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="228" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="234" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="235" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="252" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="252" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279273" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="256" stop="362"/>
              <exon start="2328" stop="2382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="265" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="266" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="267" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="281" stop="362"/>
              <exon start="2328" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589506" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2357" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2461" stop="2466"/>
              <exon start="2701" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2749" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2781" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3468"/>
              <exon start="3662" stop="3673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2805" stop="2822"/>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2998" stop="3061"/>
              <exon start="3153" stop="3448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTAACTAAGAAGCTGTATTATTCTATAGTATTTATTTTTTGTCACTTTCTACTTTACATATTTAGCCACATTTCCCTCTCCTTTCGAACAATTTCAACAAAATGGATGCGAAAATCGGAAAATTCTTCGATTCAATCGGCGATTTCTTCACCGGCGGAGATCAAATTCCTTGGTGCGACTCTGATATAGTCGCT : GGTTGTGAACGTGAAGTTGCTGAGGCTGAAAAAGGTTCATCTGATGACCTTAAAAGTGAATGCATTATGCGTTTATCTTGGGCTCTTGTTCACTCAAGAAGGCCTGAAGATATACAGCGTGGGATAGCAATGCTTGAAG : CTTCTTTGGGTGGCAGTAGCAGTCCCTTGCAAATGAGGGAAAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGCGGGGACTTTCCAAGAAGCAGGCAGCTTGTTGATCGTTGTTTGGAG : ATTGCGCCGGATTGGAGGCAGGCCTTGACCCTCAAGAAAACAATTGAAGAGAAAATTACCAAAG : ATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCATAACTATTCAAGCTTTGCTAATA : GACATAAACAAA</gDNA_template>
            <first_frame> K  L  N  *  E  A  V  L  F  Y  S  I  Y  F  L  S  L  S  T  L  H  I  *  P  H  F  P  L  L  S  N  N  F  N  K  M  D  A  K  I  G  K  F  F  D  S  I  G  D  F  F  T  G  G  D  Q  I  P  W  C  D  S  D  I  V  A  :  G  C  E  R  E  V  A  E  A  E  K  G  S  S  D  D  L  K  S  E  C  I  M  R  L  S  W  A  L  V  H  S  R  R  P  E  D  I  Q  R  G  I  A  M  L  E   : A  S  L  G  G  S  S  S  P  L  Q  M  R  E  K  L  Y  L  L  A  V  G  Y  Y  R  S  G  D  F  P  R  S  R  Q  L  V  D  R  C  L  E  :  I  A  P  D  W  R  Q  A  L  T  L  K  K  T  I  E  E  K  I  T  K   : D  G  V  I  G  I  G  I  A  A  T  A  V  G  V  L  V  G  G  I  A  A  A  L  A  R  K  G  *  T  C  H  I  N  T  T  S  V  H  I  E  L  N  S  S  L  S  V  I  S  S  E  K  H  M  N  S  Y  L  *  V  Q  K  F  *  Y  F  S  F  E  L  V  E  E  N  N  G  M  Y  N  *  I  K  I  L  D  F  I  F  *  F  Y  I  S  L  S  K  A  *  L  F  K  L  C  *  * :   T  *  T   </first_frame>
            <second_frame>  N  L  T  K  K  L  Y  Y  S  I  V  F  I  F  C  H  F  L  L  Y  I  F  S  H  I  S  L  S  F  R  T  I  S  T  K  W  M  R  K  S  E  N  S  S  I  Q  S  A  I  S  S  P  A  E  I  K  F  L  G  A  T  L  I  *  S  L :   V  V  N  V  K  L  L  R  L  K  K  V  H  L  M  T  L  K  V  N  A  L  C  V  Y  L  G  L  L  F  T  Q  E  G  L  K  I  Y  S  V  G  *  Q  C  L  K  :  L  L  W  V  A  V  A  V  P  C  K  *  G  K  S  F  I  F  W  L  L  V  T  I  E  A  G  T  F  Q  E  A  G  S  L  L  I  V  V  W  R :   L  R  R  I  G  G  R  P  *  P  S  R  K  Q  L  K  R  K  L  P  K  :  M  E  L  L  A  S  A  L  L  L  L  L  L  E  F  W  L  V  E  L  Q  L  L  *  P  A  R  V  E  L  V  I  *  T  Q  L  V  C  I  L  N  S  T  L  P  F  L  L  S  L  L  K  S  T  *  I  R  I  C  E  C  R  S  F  D  T  F  P  L  N  W  *  K  K  T  M  A  C  T  T  E  S  R  F  L  I  S  F  S  N  F  I  *  V  C  Q  K  H  N  Y  S  S  F  A  N   : R  H  K  Q  </second_frame>
            <third_frame>   T  *  L  R  S  C  I  I  L  *  Y  L  F  F  V  T  F  Y  F  T  Y  L  A  T  F  P  S  P  F  E  Q  F  Q  Q  N  G  C  E  N  R  K  I  L  R  F  N  R  R  F  L  H  R  R  R  S  N  S  L  V  R  L  *  Y  S  R   : W  L  *  T  *  S  C  *  G  *  K  R  F  I  *  *  P  *  K  *  M  H  Y  A  F  I  L  G  S  C  S  L  K  K  A  *  R  Y  T  A  W  D  S  N  A  *  S :   F  F  G  W  Q  *  Q  S  L  A  N  E  G  K  A  L  S  S  G  C  W  L  L  *  K  R  G  L  S  K  K  Q  A  A  C  *  S  L  F  G   : D  C  A  G  L  E  A  G  L  D  P  Q  E  N  N  *  R  E  N  Y  Q  R :   W  S  Y  W  H  R  H  C  C  Y  C  C  W  S  F  G  W  W  N  C  S  C  F  S  P  Q  G  L  N  L  S  Y  K  H  N  *  C  A  Y  *  T  Q  L  F  P  F  C  Y  L  F  *  K  A  H  E  F  V  F  V  S  A  E  V  L  I  L  F  L  *  I  G  R  R  K  Q  W  H  V  Q  L  N  Q  D  S  *  F  H  F  L  I  L  Y  K  F  V  K  S  I  T  I  Q  A  L  L  I  :  D  I  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="234" stop="362"/>
                    <exon start="2328" stop="2466"/>
                    <exon start="2701" stop="2822"/>
                    <exon start="2998" stop="3061"/>
                    <exon start="3153" stop="3238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHFPLLSNNFNKMDAKIGKFFDSIGDFFTGGDQIPWCDSDIVAGCEREVAEAEKGSSDDLKSECIMRLSWALVHSRRPEDIQRGIAMLEASLGGSSSPLQMREKLYLLAVGYYRSGDFPRSRQLVDRCLEIAPDWRQALTLKKTIEEKITKDGVIGIGIAATAVGVLVGGIAAALARKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3148" e_stop="3450"/>
            <exon e_start="3662" e_stop="3683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.821" e_score="0.917"/>
          <exon-only e_score="0.591"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="3148" e_stop="3450" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.821">
            <gDNA_intron_boundary i_start="3451" i_stop="3661" i_length="211"/>
          </intron>
          <exon e_serial="2" e_score="0.591">
            <gDNA_exon_boundary e_start="3662" e_stop="3683" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3148" stop="3450"/>
              <exon start="3662" stop="3683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477089" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGATGGAGTTATTGGCATCGGCATTGCTGCTACTGCTGTTGGAGTTTTGGTTGGTGGAATTGCAGCTGCTTTAGCCCGCAAGGGTTGAACTTGTCATATAAACACAACTAGTGTGCATATTGAACTCAACTCTTCCCTTTCTGTTATCTCTTCTGAAAAGCACATGAATTCGTATTTGTGAGTGCAGAAGTTTTGATACTTTTCCTTTGAATTGGTAGAAGAAAACAATGGCATGTACAACTGAATCAAGATTCTTGATTTCATTTTCTAATTTTATATAAGTTTGTCAAAAGCATAACT : GACATAAACAAAGGACTAAAGC</gDNA_template>
            <first_frame> N  R  W  S  Y  W  H  R  H  C  C  Y  C  C  W  S  F  G  W  W  N  C  S  C  F  S  P  Q  G  L  N  L  S  Y  K  H  N  *  C  A  Y  *  T  Q  L  F  P  F  C  Y  L  F  *  K  A  H  E  F  V  F  V  S  A  E  V  L  I  L  F  L  *  I  G  R  R  K  Q  W  H  V  Q  L  N  Q  D  S  *  F  H  F  L  I  L  Y  K  F  V  K  S  I  T  :  D  I  N  K  G  L  K  </first_frame>
            <second_frame>  T  D  G  V  I  G  I  G  I  A  A  T  A  V  G  V  L  V  G  G  I  A  A  A  L  A  R  K  G  *  T  C  H  I  N  T  T  S  V  H  I  E  L  N  S  S  L  S  V  I  S  S  E  K  H  M  N  S  Y  L  *  V  Q  K  F  *  Y  F  S  F  E  L  V  E  E  N  N  G  M  Y  N  *  I  K  I  L  D  F  I  F  *  F  Y  I  S  L  S  K  A  *  L :   T  *  T  K  D  *  S </second_frame>
            <third_frame>   Q  M  E  L  L  A  S  A  L  L  L  L  L  L  E  F  W  L  V  E  L  Q  L  L  *  P  A  R  V  E  L  V  I  *  T  Q  L  V  C  I  L  N  S  T  L  P  F  L  L  S  L  L  K  S  T  *  I  R  I  C  E  C  R  S  F  D  T  F  P  L  N  W  *  K  K  T  M  A  C  T  T  E  S  R  F  L  I  S  F  S  N  F  I  *  V  C  Q  K  H  N   : *  H  K  Q  R  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0147G13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6362" PGL_stop="4521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6362" e_stop="6222"/>
            <exon e_start="5754" e_stop="5551"/>
            <exon e_start="4938" e_stop="4801"/>
            <exon e_start="4696" e_stop="4521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.957"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="6362" e_stop="6222" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6221" i_stop="5755" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="5754" e_stop="5551" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5550" i_stop="4939" i_length="612"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="4938" e_stop="4801" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4800" i_stop="4697" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.898">
            <gDNA_exon_boundary e_start="4696" e_stop="4521" e_length="176"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6362" stop="6222"/>
              <exon start="5754" stop="5551"/>
              <exon start="4938" stop="4801"/>
              <exon start="4696" stop="4521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGGTTTACGCACACGCCATGGGTTAGAAAATAATCAGGAATTTCAACATCAACCGTATAAAAATGGTTTAGGCCCACGTCACGGGTTGACAAATGATCAGGAATTTCCTGGCAAGAAACAAGAGGACCCCAATATG : AAAAATGGATACAGGTCTGTTCCTCAATTTGGAATGTGGGATCAACAAGCAACTGGAGGTGGTGCAGCAGCCAGTTACACAGTAGAATTTTCGAAGGCTCGCGTCAACAGGAAACAACACAAAAATAATGATCTTTTAGCACGACCACCTAGCATCGATCACGAGCAGGAAGATCTTAGGAAGCAGCAAGAGGATGCTTGCATG : AGGAAAAAGAATATGTTGACATACCTCAATTGTTGCATTAGGCCTTGATCATTTCCAAATGTCCAAGTGAAAAGCCTCATTTTGTAATAGTCTTGAAAGTTGCTATATATGCAAATGAACCTCACACTTTTTGTTTTC : TTTACAAAGTAAGATAAGATTGTGTACACGTCACTCTTTTCGGATCCCACTTATAAAATTACGGTGGATATGTTGTTATAGTAAAAACATTCTTATTGTTTTGTTGTTTAATGCAGTTATATACCATATGTTATATTATTATTCTGTTGTTTAATGCAGTTTTATACACCATATGT</gDNA_template>
            <first_frame> K  N  G  L  R  T  R  H  G  L  E  N  N  Q  E  F  Q  H  Q  P  Y  K  N  G  L  G  P  R  H  G  L  T  N  D  Q  E  F  P  G  K  K  Q  E  D  P  N  M  :  K  N  G  Y  R  S  V  P  Q  F  G  M  W  D  Q  Q  A  T  G  G  G  A  A  A  S  Y  T  V  E  F  S  K  A  R  V  N  R  K  Q  H  K  N  N  D  L  L  A  R  P  P  S  I  D  H  E  Q  E  D  L  R  K  Q  Q  E  D  A  C  M  :  R  K  K  N  M  L  T  Y  L  N  C  C  I  R  P  *  S  F  P  N  V  Q  V  K  S  L  I  L  *  *  S  *  K  L  L  Y  M  Q  M  N  L  T  L  F  V  F  :  F  T  K  *  D  K  I  V  Y  T  S  L  F  S  D  P  T  Y  K  I  T  V  D  M  L  L  *  *  K  H  S  Y  C  F  V  V  *  C  S  Y  I  P  Y  V  I  L  L  F  C  C  L  M  Q  F  Y  T  P  Y   </first_frame>
            <second_frame>  K  M  V  Y  A  H  A  M  G  *  K  I  I  R  N  F  N  I  N  R  I  K  M  V  *  A  H  V  T  G  *  Q  M  I  R  N  F  L  A  R  N  K  R  T  P  I  * :   K  M  D  T  G  L  F  L  N  L  E  C  G  I  N  K  Q  L  E  V  V  Q  Q  P  V  T  Q  *  N  F  R  R  L  A  S  T  G  N  N  T  K  I  M  I  F  *  H  D  H  L  A  S  I  T  S  R  K  I  L  G  S  S  K  R  M  L  A  * :   G  K  R  I  C  *  H  T  S  I  V  A  L  G  L  D  H  F  Q  M  S  K  *  K  A  S  F  C  N  S  L  E  S  C  Y  I  C  K  *  T  S  H  F  L  F  S :   L  Q  S  K  I  R  L  C  T  R  H  S  F  R  I  P  L  I  K  L  R  W  I  C  C  Y  S  K  N  I  L  I  V  L  L  F  N  A  V  I  Y  H  M  L  Y  Y  Y  S  V  V  *  C  S  F  I  H  H  M  </second_frame>
            <third_frame>   K  W  F  T  H  T  P  W  V  R  K  *  S  G  I  S  T  S  T  V  *  K  W  F  R  P  T  S  R  V  D  K  *  S  G  I  S  W  Q  E  T  R  G  P  Q  Y   : E  K  W  I  Q  V  C  S  S  I  W  N  V  G  S  T  S  N  W  R  W  C  S  S  Q  L  H  S  R  I  F  E  G  S  R  Q  Q  E  T  T  Q  K  *  *  S  F  S  T  T  T  *  H  R  S  R  A  G  R  S  *  E  A  A  R  G  C  L  H   : E  E  K  E  Y  V  D  I  P  Q  L  L  H  *  A  L  I  I  S  K  C  P  S  E  K  P  H  F  V  I  V  L  K  V  A  I  Y  A  N  E  P  H  T  F  C  F   : L  Y  K  V  R  *  D  C  V  H  V  T  L  F  G  S  H  L  *  N  Y  G  G  Y  V  V  I  V  K  T  F  L  L  F  C  C  L  M  Q  L  Y  T  I  C  Y  I  I  I  L  L  F  N  A  V  L  Y  T  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6362" stop="6222"/>
                    <exon start="5754" stop="5551"/>
                    <exon start="4938" stop="4891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNGLRTRHGLENNQEFQHQPYKNGLGPRHGLTNDQEFPGKKQEDPNMKNGYRSVPQFGMWDQQATGGGAAASYTVEFSKARVNRKQHKNNDLLARPPSIDHEQEDLRKQQEDACMRKKNMLTYLNCCIRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="7959" PGL_stop="6573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7959" e_stop="7888"/>
            <exon e_start="7106" e_stop="6573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.970"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="7959" e_stop="7888" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="7887" i_stop="7107" i_length="781"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="7106" e_stop="6573" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7959" stop="7888"/>
              <exon start="7106" stop="6948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7888"/>
              <exon start="7106" stop="6717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7955" stop="7888"/>
              <exon start="7106" stop="6644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7953" stop="7888"/>
              <exon start="7106" stop="6573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7953" stop="7888"/>
              <exon start="7106" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7106" stop="6741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTTTTTTTTTTTCATCATTTCTCTCCTGTGACTTTTCCTCTTTGTGCTTCATGGAAAATCGAAAGGAG : AGAAATGGTCCAAGAAAAGTGCCTCAATTTGGAGCATGGGATAACAATGGTGGGGATGGAGGAAATGCTGGTTACACTGTGGAGTTCTCAAAAGCTCGTGCCAACAAACAACATCAACCTAAAAACGGTTTAGACGTACGTCACGAGTTGAAAAATGACAAGGAACTAAACCACCATCATGAACATAAACAGAGCTTAGACACACGTCATGGGTTGAAGAACGATAAGGAAATTCAGCATCATGAACATAAACAGGGCTTAGACGCTCGTCATGGTCATGGGTTGAAAAACAACAATAAGGATATTCAGAATCATGAGTATAAACATGGTTTAGACGCACATCATGGTTATGGGATGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTTTAGACGCACATCACGGTCATGGGTTGAAAAACAACAATAAGGAAATTCAGCATCATGAGAATAAACATGGTGTAGACGCACATCACGGTCATGGGTTGAAAAACAATAATAAGGAAATTCAGCATCATGAA</gDNA_template>
            <first_frame> K  L  F  F  F  S  S  F  L  S  C  D  F  S  S  L  C  F  M  E  N  R  K  E  :  R  N  G  P  R  K  V  P  Q  F  G  A  W  D  N  N  G  G  D  G  G  N  A  G  Y  T  V  E  F  S  K  A  R  A  N  K  Q  H  Q  P  K  N  G  L  D  V  R  H  E  L  K  N  D  K  E  L  N  H  H  H  E  H  K  Q  S  L  D  T  R  H  G  L  K  N  D  K  E  I  Q  H  H  E  H  K  Q  G  L  D  A  R  H  G  H  G  L  K  N  N  N  K  D  I  Q  N  H  E  Y  K  H  G  L  D  A  H  H  G  Y  G  M  K  N  N  N  K  E  I  Q  H  H  E  N  K  H  G  L  D  A  H  H  G  H  G  L  K  N  N  N  K  E  I  Q  H  H  E  N  K  H  G  V  D  A  H  H  G  H  G  L  K  N  N  N  K  E  I  Q  H  H  E </first_frame>
            <second_frame>  S  F  F  F  F  H  H  F  S  P  V  T  F  P  L  C  A  S  W  K  I  E  R  R :   E  M  V  Q  E  K  C  L  N  L  E  H  G  I  T  M  V  G  M  E  E  M  L  V  T  L  W  S  S  Q  K  L  V  P  T  N  N  I  N  L  K  T  V  *  T  Y  V  T  S  *  K  M  T  R  N  *  T  T  I  M  N  I  N  R  A  *  T  H  V  M  G  *  R  T  I  R  K  F  S  I  M  N  I  N  R  A  *  T  L  V  M  V  M  G  *  K  T  T  I  R  I  F  R  I  M  S  I  N  M  V  *  T  H  I  M  V  M  G  *  K  T  T  I  R  K  F  S  I  M  R  I  N  M  V  *  T  H  I  T  V  M  G  *  K  T  T  I  R  K  F  S  I  M  R  I  N  M  V  *  T  H  I  T  V  M  G  *  K  T  I  I  R  K  F  S  I  M   </second_frame>
            <third_frame>   A  F  F  F  F  I  I  S  L  L  *  L  F  L  F  V  L  H  G  K  S  K  G   : E  K  W  S  K  K  S  A  S  I  W  S  M  G  *  Q  W  W  G  W  R  K  C  W  L  H  C  G  V  L  K  S  S  C  Q  Q  T  T  S  T  *  K  R  F  R  R  T  S  R  V  E  K  *  Q  G  T  K  P  P  S  *  T  *  T  E  L  R  H  T  S  W  V  E  E  R  *  G  N  S  A  S  *  T  *  T  G  L  R  R  S  S  W  S  W  V  E  K  Q  Q  *  G  Y  S  E  S  *  V  *  T  W  F  R  R  T  S  W  L  W  D  E  K  Q  Q  *  G  N  S  A  S  *  E  *  T  W  F  R  R  T  S  R  S  W  V  E  K  Q  Q  *  G  N  S  A  S  *  E  *  T  W  C  R  R  T  S  R  S  W  V  E  K  Q  *  *  G  N  S  A  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7959" stop="7888"/>
                    <exon start="7106" stop="6573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFFFSSFLSCDFSSLCFMENRKERNGPRKVPQFGAWDNNGGDGGNAGYTVEFSKARANKQHQPKNGLDVRHELKNDKELNHHHEHKQSLDTRHGLKNDKEIQHHEHKQGLDARHGHGLKNNNKDIQNHEYKHGLDAHHGYGMKNNNKEIQHHENKHGLDAHHGHGLKNNNKEIQHHENKHGVDAHHGHGLKNNNKEIQHHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9331" PGL_stop="10582"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9331" e_stop="9577"/>
            <exon e_start="10093" e_stop="10582"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9331" e_stop="9577" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9578" i_stop="10092" i_length="515"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="10093" e_stop="10582" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9331" stop="9577"/>
              <exon start="10093" stop="10337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9342" stop="9577"/>
              <exon start="10093" stop="10582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9521" stop="9577"/>
              <exon start="10093" stop="10478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGACACACCCCATTTTCCCTTCATTCACTTTCTAATCTTTCCCTTCTCTAACAAAAAAAAACATAAAAACATAACAACAACAACAAACAACAAAAAAAGTAGTTTGCATCTTTTACTCTTTGCCTTTTTGTCCCAAAAAAAAAAATAAAAAATGGGGGGTTGTTGCTCAAAGGCAGAGACTGATCCTGCACAAAATAATGAAGAAATTGGACAATCATATTCAAAACAAGGAGAATCAAATGCAG : GAAACAATGACATGCAAGGTTCCACTACACCATCAAAGGCTCCACCACATGCATCACCAAACCATTCTTCAAAGCCATCTAAGGCAGCCCCAATAGGGCCAGTATTAGGCAGGCCAATGGAGGATATAAAGGCAACATACACCCTAGGTAAAGAACTAGGAAGAGGTCAATTTGGTGTAACACATTTGTGCACACACAAACAAACAGGGGAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAATTAGTGAATAAAGAGGATATTGAGGATGTAAGGAGGGAAGTGCAAATTATGCACCATTTGACAGAACAACCAAACATTGTTGAACTCAAAGGGGCTTATGAGGATAAACATTCTGTGCATTTGGTCATGGAATTGTGTGCTGGAGGTGAACTTTTTGATAGAATTATAGCTAAAGGGCATTATACAGAAAGAGCAGCAGCTTCATTGTTGAGAACAATTGTGCAAATTGTACATACTTGTCATTC</gDNA_template>
            <first_frame> W  D  T  P  H  F  P  F  I  H  F  L  I  F  P  F  S  N  K  K  K  H  K  N  I  T  T  T  T  N  N  K  K  S  S  L  H  L  L  L  F  A  F  L  S  Q  K  K  K  *  K  M  G  G  C  C  S  K  A  E  T  D  P  A  Q  N  N  E  E  I  G  Q  S  Y  S  K  Q  G  E  S  N  A   : G  N  N  D  M  Q  G  S  T  T  P  S  K  A  P  P  H  A  S  P  N  H  S  S  K  P  S  K  A  A  P  I  G  P  V  L  G  R  P  M  E  D  I  K  A  T  Y  T  L  G  K  E  L  G  R  G  Q  F  G  V  T  H  L  C  T  H  K  Q  T  G  E  Q  F  A  C  K  T  I  A  K  R  K  L  V  N  K  E  D  I  E  D  V  R  R  E  V  Q  I  M  H  H  L  T  E  Q  P  N  I  V  E  L  K  G  A  Y  E  D  K  H  S  V  H  L  V  M  E  L  C  A  G  G  E  L  F  D  R  I  I  A  K  G  H  Y  T  E  R  A  A  A  S  L  L  R  T  I  V  Q  I  V  H  T  C  H   </first_frame>
            <second_frame>  G  T  H  P  I  F  P  S  F  T  F  *  S  F  P  S  L  T  K  K  N  I  K  T  *  Q  Q  Q  Q  T  T  K  K  V  V  C  I  F  Y  S  L  P  F  C  P  K  K  K  N  K  K  W  G  V  V  A  Q  R  Q  R  L  I  L  H  K  I  M  K  K  L  D  N  H  I  Q  N  K  E  N  Q  M  Q  :  E  T  M  T  C  K  V  P  L  H  H  Q  R  L  H  H  M  H  H  Q  T  I  L  Q  S  H  L  R  Q  P  Q  *  G  Q  Y  *  A  G  Q  W  R  I  *  R  Q  H  T  P  *  V  K  N  *  E  E  V  N  L  V  *  H  I  C  A  H  T  N  K  Q  G  S  N  L  H  A  K  Q  L  P  R  G  N  *  *  I  K  R  I  L  R  M  *  G  G  K  C  K  L  C  T  I  *  Q  N  N  Q  T  L  L  N  S  K  G  L  M  R  I  N  I  L  C  I  W  S  W  N  C  V  L  E  V  N  F  L  I  E  L  *  L  K  G  I  I  Q  K  E  Q  Q  L  H  C  *  E  Q  L  C  K  L  Y  I  L  V  I  </second_frame>
            <third_frame>   G  H  T  P  F  S  L  H  S  L  S  N  L  S  L  L  *  Q  K  K  T  *  K  H  N  N  N  N  K  Q  Q  K  K  *  F  A  S  F  T  L  C  L  F  V  P  K  K  K  I  K  N  G  G  L  L  L  K  G  R  D  *  S  C  T  K  *  *  R  N  W  T  I  I  F  K  T  R  R  I  K  C  R :   K  Q  *  H  A  R  F  H  Y  T  I  K  G  S  T  T  C  I  T  K  P  F  F  K  A  I  *  G  S  P  N  R  A  S  I  R  Q  A  N  G  G  Y  K  G  N  I  H  P  R  *  R  T  R  K  R  S  I  W  C  N  T  F  V  H  T  Q  T  N  R  G  A  I  C  M  Q  N  N  C  Q  E  E  I  S  E  *  R  G  Y  *  G  C  K  E  G  S  A  N  Y  A  P  F  D  R  T  T  K  H  C  *  T  Q  R  G  L  *  G  *  T  F  C  A  F  G  H  G  I  V  C  W  R  *  T  F  *  *  N  Y  S  *  R  A  L  Y  R  K  S  S  S  F  I  V  E  N  N  C  A  N  C  T  Y  L  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9481" stop="9577"/>
                    <exon start="10093" stop="10580"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGGCCSKAETDPAQNNEEIGQSYSKQGESNAGNNDMQGSTTPSKAPPHASPNHSSKPSKAAPIGPVLGRPMEDIKATYTLGKELGRGQFGVTHLCTHKQTGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTEQPNIVELKGAYEDKHSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="18117" PGL_stop="13729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18117" e_stop="17778"/>
            <exon e_start="16864" e_stop="16736"/>
            <exon e_start="16522" e_stop="16431"/>
            <exon e_start="16065" e_stop="15965"/>
            <exon e_start="15891" e_stop="15781"/>
            <exon e_start="15094" e_stop="14986"/>
            <exon e_start="14716" e_stop="14666"/>
            <exon e_start="14131" e_stop="13729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.330" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18117" e_stop="17778" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17777" i_stop="16865" i_length="913"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16864" e_stop="16736" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16735" i_stop="16523" i_length="213"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16522" e_stop="16431" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16430" i_stop="16066" i_length="365"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16065" e_stop="15965" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15964" i_stop="15892" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15891" e_stop="15781" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.330" acc_prob="0.985">
            <gDNA_intron_boundary i_start="15780" i_stop="15095" i_length="686"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15094" e_stop="14986" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14985" i_stop="14717" i_length="269"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14716" e_stop="14666" e_length="51"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534"/>
          </intron>
          <exon e_serial="8" e_score="0.928">
            <gDNA_exon_boundary e_start="14131" e_stop="13729" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18117" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="15965"/>
              <exon start="15891" stop="15781"/>
              <exon start="15094" stop="15035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18096" stop="17778"/>
              <exon start="16864" stop="16740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18091" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="16038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18088" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18020" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="15965"/>
              <exon start="15891" stop="15800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18020" stop="17778"/>
              <exon start="16864" stop="16793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18015" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="16035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18015" stop="17778"/>
              <exon start="16864" stop="16736"/>
              <exon start="16522" stop="16431"/>
              <exon start="16065" stop="16035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18014" stop="17778"/>
              <exon start="16864" stop="16743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15881" stop="15781"/>
              <exon start="15094" stop="14986"/>
              <exon start="14716" stop="14666"/>
              <exon start="14131" stop="13803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14714" stop="14666"/>
              <exon start="14131" stop="13792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14693" stop="14666"/>
              <exon start="14131" stop="13729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAATGGAGAGAGTATTAGATATAGTTTTCTAATCTTTTAAGAAAAATTGCATAAAATTGATTTCAATTTGCATTCCAAATTTCTCAAAAATCTCAAAAAATGTTGAGAATTTCTTCTTCTTCTTCTTCTTTGCATGTTCCCTCAATTTGTGGAGCACCAGTTAGTTTCATTCTTTCTTTCTTGAATCCATCTTCTCGTAAAGTATCAAACTTTACTCGCTTAGCTTTACTTCACTCGACAACCCTTTTCCCCAATTCACGTAATTTCCAGTTTCCCACCTTCAGAAGGGTGTCAACAATGATGGGTCGTACTCATTCTTGTTCGAGAGTGGTTACAG : CTTCATATAGTGCTGCGAGTGGTCCTGGAGGCAGTTCTGGAGGCGATCGGGAGATATTGGTGCAGCATTTACTTGTCAAAGAAGATGATCAGAAACTTCTACTGGACCTTCAGAAAAAAACTGCTGAAG : GAGAGGATCTAAGTGATCTGGCCGTTGAGTATTCTATGTGTCCATCAAAAGAAGATGGGGGAATGCTGGGCTGGGTGAGAAAAGGGCAAATG : GTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAG : GGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGT : GGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTATTG : TGTCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAG : GGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAATTTTCTCCATATTTTGAAATGTTGCTAGATGTTAATGGATTTACTGGTAGTGTTTTGTCACA</gDNA_template>
            <first_frame> M  K  W  R  E  Y  *  I  *  F  S  N  L  L  R  K  I  A  *  N  *  F  Q  F  A  F  Q  I  S  Q  K  S  Q  K  M  L  R  I  S  S  S  S  S  S  L  H  V  P  S  I  C  G  A  P  V  S  F  I  L  S  F  L  N  P  S  S  R  K  V  S  N  F  T  R  L  A  L  L  H  S  T  T  L  F  P  N  S  R  N  F  Q  F  P  T  F  R  R  V  S  T  M  M  G  R  T  H  S  C  S  R  V  V  T   : A  S  Y  S  A  A  S  G  P  G  G  S  S  G  G  D  R  E  I  L  V  Q  H  L  L  V  K  E  D  D  Q  K  L  L  L  D  L  Q  K  K  T  A  E   : G  E  D  L  S  D  L  A  V  E  Y  S  M  C  P  S  K  E  D  G  G  M  L  G  W  V  R  K  G  Q  M  :  V  P  E  F  E  E  A  A  F  G  A  P  L  N  K  V  V  K  C  K  T  K  F  G  W  H  L  L  Q  V  L  S  E  R :   E  E  S  V  L  E  H  I  Q  P  N  E  F  H  V  R  L  Q  D  P  S  F  L  E  E  A  Q  L  I  D  V  R  E  P  E  E  V :   A  Q  A  S  V  P  G  F  Q  I  L  P  L  R  Q  F  G  V  W  G  P  E  I  T  T  K  F  D  P  Q  K  D  T  Y  V  L  :  C  H  H  G  V  R  S  L  Q  V  A  K  W  L  Q  T  Q  :  G  F  R  K  V  F  N  V  A  G  G  I  H  E  Y  A  V  K  V  D  P  S  I  P  T  Y  *  S  G  Y  S  S  C  P  C  S  F  P  C  P  A  S  R  *  Q  S  *  V  W  T  K  P  F  C  F  *  F  V  L  Q  F  *  F  K  H  P  G  N  T  I  N  V  N  G  *  S  *  D  I  F  C  M  L  S  L  Y  F  Q  H  A  S  I  I  K  S  Y  N  L  L  R  F  S  P  Y  *  R  *  H  N  A  *  F  *  N  F  L  H  I  L  K  C  C  *  M  L  M  D  L  L  V  V  F  C  H  </first_frame>
            <second_frame>  *  N  G  E  S  I  R  Y  S  F  L  I  F  *  E  K  L  H  K  I  D  F  N  L  H  S  K  F  L  K  N  L  K  K  C  *  E  F  L  L  L  L  L  L  C  M  F  P  Q  F  V  E  H  Q  L  V  S  F  F  L  S  *  I  H  L  L  V  K  Y  Q  T  L  L  A  *  L  Y  F  T  R  Q  P  F  S  P  I  H  V  I  S  S  F  P  P  S  E  G  C  Q  Q  *  W  V  V  L  I  L  V  R  E  W  L  Q  :  L  H  I  V  L  R  V  V  L  E  A  V  L  E  A  I  G  R  Y  W  C  S  I  Y  L  S  K  K  M  I  R  N  F  Y  W  T  F  R  K  K  L  L  K  :  E  R  I  *  V  I  W  P  L  S  I  L  C  V  H  Q  K  K  M  G  E  C  W  A  G  *  E  K  G  K  W :   C  Q  N  L  K  K  L  H  L  V  H  L  *  I  R  L  *  S  A  K  L  S  L  G  G  I  C  C  K  F  Y  L  R   : G  R  N  L  Y  L  N  T  S  S  Q  T  S  F  M  *  G  C  K  I  R  L  S  W  K  R  L  N  *  L  M  F  E  N  Q  R  K   : W  P  R  L  L  Y  Q  D  F  R  F  F  L  F  A  N  L  E  S  G  D  Q  K  *  L  L  S  L  I  L  R  R  T  L  M  Y  C :   V  I  M  A  *  G  H  Y  K  S  P  S  G  C  R  H  R :   D  S  G  R  Y  L  T  W  P  E  E  S  M  N  M  L  S  K  L  I  H  R  S  Q  L  I  E  A  G  T  L  R  V  P  A  L  S  P  A  P  P  L  G  D  R  A  K  F  G  Q  N  H  F  V  F  D  L  S  Y  N  F  D  S  N  I  L  G  T  Q  S  M  *  M  V  D  L  R  T  S  F  V  C  Y  L  C  I  S  N  M  P  Q  L  S  N  H  T  I  C  Y  G  F  H  H  I  R  D  N  T  M  H  N  F  K  I  F  S  I  F  *  N  V  A  R  C  *  W  I  Y  W  *  C  F  V  T </second_frame>
            <third_frame>   E  M  E  R  V  L  D  I  V  F  *  S  F  K  K  N  C  I  K  L  I  S  I  C  I  P  N  F  S  K  I  S  K  N  V  E  N  F  F  F  F  F  F  F  A  C  S  L  N  L  W  S  T  S  *  F  H  S  F  F  L  E  S  I  F  S  *  S  I  K  L  Y  S  L  S  F  T  S  L  D  N  P  F  P  Q  F  T  *  F  P  V  S  H  L  Q  K  G  V  N  N  D  G  S  Y  S  F  L  F  E  S  G  Y  S :   F  I  *  C  C  E  W  S  W  R  Q  F  W  R  R  S  G  D  I  G  A  A  F  T  C  Q  R  R  *  S  E  T  S  T  G  P  S  E  K  N  C  *  R :   R  G  S  K  *  S  G  R  *  V  F  Y  V  S  I  K  R  R  W  G  N  A  G  L  G  E  K  R  A  N   : G  A  R  I  *  R  S  C  I  W  C  T  S  E  *  G  C  K  V  Q  N  *  V  W  V  A  F  V  A  S  S  I  *  E  :  G  G  I  C  T  *  T  H  P  A  K  R  V  S  C  E  V  A  R  S  V  F  P  G  R  G  S  I  D  *  C  S  R  T  R  G  S  :  G  P  G  F  C  T  R  I  S  D  S  S  S  S  P  I  W  S  L  G  T  R  N  N  Y  *  V  *  S  S  E  G  H  L  C  I   : V  S  S  W  R  E  V  T  T  S  R  Q  V  V  A  D  T   : G  I  Q  E  G  I  *  R  G  R  R  N  P  *  I  C  C  Q  S  *  S  I  D  P  N  L  L  K  R  V  L  F  V  S  L  L  F  P  L  P  R  L  S  V  T  E  L  S  L  D  K  T  I  L  F  L  I  C  P  T  I  L  I  Q  T  S  W  E  H  N  Q  C  E  W  L  I  L  G  H  L  L  Y  A  I  S  V  F  P  T  C  L  N  Y  Q  I  I  Q  F  A  T  V  F  T  I  L  E  I  T  Q  C  I  I  L  K  F  S  P  Y  F  E  M  L  L  D  V  N  G  F  T  G  S  V  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18054" stop="17778"/>
                    <exon start="16864" stop="16736"/>
                    <exon start="16522" stop="16431"/>
                    <exon start="16065" stop="15965"/>
                    <exon start="15891" stop="15781"/>
                    <exon start="15094" stop="14986"/>
                    <exon start="14716" stop="14666"/>
                    <exon start="14131" stop="14051"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQFAFQISQKSQKMLRISSSSSSLHVPSICGAPVSFILSFLNPSSRKVSNFTRLALLHSTTLFPNSRNFQFPTFRRVSTMMGRTHSCSRVVTASYSAASGPGGSSGGDREILVQHLLVKEDDQKLLLDLQKKTAEGEDLSDLAVEYSMCPSKEDGGMLGWVRKGQMVPEFEEAAFGAPLNKVVKCKTKFGWHLLQVLSEREESVLEHIQPNEFHVRLQDPSFLEEAQLIDVREPEEVAQASVPGFQILPLRQFGVWGPEITTKFDPQKDTYVLCHHGVRSLQVAKWLQTQGFRKVFNVAGGIHEYAVKVDPSIPTY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14072" stop="13731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDPNLLKRVLFVSLLFPLPRLSVTELSLDKTILFLICPTILIQTSWEHNQCEWLILGHLLYAISVFPTCLNYQIIQFATVFTILEITQCIILKFSPYFEMLLDVNGFTGSVLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16184" e_stop="16181"/>
            <exon e_start="16065" e_stop="15965"/>
            <exon e_start="15891" e_stop="15781"/>
            <exon e_start="15094" e_stop="14986"/>
            <exon e_start="14716" e_stop="14666"/>
            <exon e_start="14131" e_stop="13729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="0.500"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="0.970"/>
          <exon-intron don_prob="0.330" acc_prob="0.985" e_score="0.973"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="16184" e_stop="16181" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16180" i_stop="16066" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="16065" e_stop="15965" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15964" i_stop="15892" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="15891" e_stop="15781" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.330" acc_prob="0.985">
            <gDNA_intron_boundary i_start="15780" i_stop="15095" i_length="686"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15094" e_stop="14986" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14985" i_stop="14717" i_length="269"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14716" e_stop="14666" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14665" i_stop="14132" i_length="534"/>
          </intron>
          <exon e_serial="6" e_score="0.928">
            <gDNA_exon_boundary e_start="14131" e_stop="13729" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16184" stop="16181"/>
              <exon start="16065" stop="15965"/>
              <exon start="15891" stop="15781"/>
              <exon start="15094" stop="14986"/>
              <exon start="14716" stop="14666"/>
              <exon start="14131" stop="13768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411488" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15881" stop="15781"/>
              <exon start="15094" stop="14986"/>
              <exon start="14716" stop="14666"/>
              <exon start="14131" stop="13803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14714" stop="14666"/>
              <exon start="14131" stop="13792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14693" stop="14666"/>
              <exon start="14131" stop="13729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTT : GTGCCAGAATTTGAAGAAGCTGCATTTGGTGCACCTCTGAATAAGGTTGTAAAGTGCAAAACTAAGTTTGGGTGGCATTTGTTGCAAGTTCTATCTGAGAG : GGAGGAATCTGTACTTGAACACATCCAGCCAAACGAGTTTCATGTGAGGTTGCAAGATCCGTCTTTCCTGGAAGAGGCTCAATTGATTGATGTTCGAGAACCAGAGGAAGT : GGCCCAGGCTTCTGTACCAGGATTTCAGATTCTTCCTCTTCGCCAATTTGGAGTCTGGGGACCAGAAATAACTACTAAGTTTGATCCTCAGAAGGACACTTATGTATTG : TGTCATCATGGCGTGAGGTCACTACAAGTCGCCAAGTGGTTGCAGACACAG : GGATTCAGGAAGGTATTTAACGTGGCCGGAGGAATCCATGAATATGCTGTCAAAGTTGATCCATCGATCCCAACTTATTGAAGCGGGTACTCTTCGTGTCCCTGCTCTTTCCCCTGCCCCGCCTCTCGGTGACAGAGCTAAGTTTGGACAAAACCATTTTGTTTTTGATTTGTCCTACAATTTTGATTCAAACATCCTGGGAACACAATCAATGTGAATGGTTGATCTTAGGACATCTTTTGTATGCTATCTCTGTATTTCCAACATGCCTCAATTATCAAATCATACAATTTGCTACGGTTTTCACCATATTAGAGATAACACAATGCATAATTTTAAAATTTTCTCCATATTTTGAAATGTTGCTAGATGTTAATGGATTTACTGGTAGTGTTTTGTCACA</gDNA_template>
            <first_frame> I   : C  A  R  I  *  R  S  C  I  W  C  T  S  E  *  G  C  K  V  Q  N  *  V  W  V  A  F  V  A  S  S  I  *  E  :  G  G  I  C  T  *  T  H  P  A  K  R  V  S  C  E  V  A  R  S  V  F  P  G  R  G  S  I  D  *  C  S  R  T  R  G  S  :  G  P  G  F  C  T  R  I  S  D  S  S  S  S  P  I  W  S  L  G  T  R  N  N  Y  *  V  *  S  S  E  G  H  L  C  I   : V  S  S  W  R  E  V  T  T  S  R  Q  V  V  A  D  T   : G  I  Q  E  G  I  *  R  G  R  R  N  P  *  I  C  C  Q  S  *  S  I  D  P  N  L  L  K  R  V  L  F  V  S  L  L  F  P  L  P  R  L  S  V  T  E  L  S  L  D  K  T  I  L  F  L  I  C  P  T  I  L  I  Q  T  S  W  E  H  N  Q  C  E  W  L  I  L  G  H  L  L  Y  A  I  S  V  F  P  T  C  L  N  Y  Q  I  I  Q  F  A  T  V  F  T  I  L  E  I  T  Q  C  I  I  L  K  F  S  P  Y  F  E  M  L  L  D  V  N  G  F  T  G  S  V  L  S   </first_frame>
            <second_frame>  F  :  V  P  E  F  E  E  A  A  F  G  A  P  L  N  K  V  V  K  C  K  T  K  F  G  W  H  L  L  Q  V  L  S  E  R :   E  E  S  V  L  E  H  I  Q  P  N  E  F  H  V  R  L  Q  D  P  S  F  L  E  E  A  Q  L  I  D  V  R  E  P  E  E  V :   A  Q  A  S  V  P  G  F  Q  I  L  P  L  R  Q  F  G  V  W  G  P  E  I  T  T  K  F  D  P  Q  K  D  T  Y  V  L  :  C  H  H  G  V  R  S  L  Q  V  A  K  W  L  Q  T  Q  :  G  F  R  K  V  F  N  V  A  G  G  I  H  E  Y  A  V  K  V  D  P  S  I  P  T  Y  *  S  G  Y  S  S  C  P  C  S  F  P  C  P  A  S  R  *  Q  S  *  V  W  T  K  P  F  C  F  *  F  V  L  Q  F  *  F  K  H  P  G  N  T  I  N  V  N  G  *  S  *  D  I  F  C  M  L  S  L  Y  F  Q  H  A  S  I  I  K  S  Y  N  L  L  R  F  S  P  Y  *  R  *  H  N  A  *  F  *  N  F  L  H  I  L  K  C  C  *  M  L  M  D  L  L  V  V  F  C  H  </second_frame>
            <third_frame>   L :   C  Q  N  L  K  K  L  H  L  V  H  L  *  I  R  L  *  S  A  K  L  S  L  G  G  I  C  C  K  F  Y  L  R   : G  R  N  L  Y  L  N  T  S  S  Q  T  S  F  M  *  G  C  K  I  R  L  S  W  K  R  L  N  *  L  M  F  E  N  Q  R  K   : W  P  R  L  L  Y  Q  D  F  R  F  F  L  F  A  N  L  E  S  G  D  Q  K  *  L  L  S  L  I  L  R  R  T  L  M  Y  C :   V  I  M  A  *  G  H  Y  K  S  P  S  G  C  R  H  R :   D  S  G  R  Y  L  T  W  P  E  E  S  M  N  M  L  S  K  L  I  H  R  S  Q  L  I  E  A  G  T  L  R  V  P  A  L  S  P  A  P  P  L  G  D  R  A  K  F  G  Q  N  H  F  V  F  D  L  S  Y  N  F  D  S  N  I  L  G  T  Q  S  M  *  M  V  D  L  R  T  S  F  V  C  Y  L  C  I  S  N  M  P  Q  L  S  N  H  T  I  C  Y  G  F  H  H  I  R  D  N  T  M  H  N  F  K  I  F  S  I  F  *  N  V  A  R  C  *  W  I  Y  W  *  C  F  V  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16183" stop="16181"/>
                    <exon start="16065" stop="15965"/>
                    <exon start="15891" stop="15781"/>
                    <exon start="15094" stop="14986"/>
                    <exon start="14716" stop="14666"/>
                    <exon start="14131" stop="14051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVPEFEEAAFGAPLNKVVKCKTKFGWHLLQVLSEREESVLEHIQPNEFHVRLQDPSFLEEAQLIDVREPEEVAQASVPGFQILPLRQFGVWGPEITTKFDPQKDTYVLCHHGVRSLQVAKWLQTQGFRKVFNVAGGIHEYAVKVDPSIPTY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14072" stop="13731"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDPNLLKRVLFVSLLFPLPRLSVTELSLDKTILFLICPTILIQTSWEHNQCEWLILGHLLYAISVFPTCLNYQIIQFATVFTILEITQCIILKFSPYFEMLLDVNGFTGSVLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="19088" PGL_stop="18567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19088" e_stop="18567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19088" e_stop="18567" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19088" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTCATAGGAATGCTTGTCTATACTTGGAGGCCATCAAGTCACCTAAAAAGTCAGGAAGTTGATTGCCACTGTTAACTGCTTGTCTATACTTGGAGGCCATCAAATCGCCTAAAAAATCAGGAAATTGATTGCGACTGTTAACTTCCGTCCCTTGTCACATTTGAGAATGAAGATAGGACACCATTCTCCAACTTCCACAAGAAGTAAACGAGGGATCAAGACATGCATGGTGAATTGTTTTTCAGTAGCCTTTCAAACCACTGAAAATCGTTATCAATCAATGGAGGTTTGACAGGATTATTGCTCAAATCCATTGCTCTTTTAAAATGCATGGAGTCTGTACCATTCATGTCCTTATGAATTTGTTGCGATGCCAGAGTAAAGTTGGTTGCTATATATCTAGAAGTACAGAAACAGGGGCTGAAGTAGAAGCTCAGATACGGGTGCAGCCAAACCCACTAGTTTTTTTGCTCGTGTATTTGTGTTACAAAATTCATTGAATATAAACACATAAAATTTT</gDNA_template>
            <first_frame> S  S  *  E  C  L  S  I  L  G  G  H  Q  V  T  *  K  V  R  K  L  I  A  T  V  N  C  L  S  I  L  G  G  H  Q  I  A  *  K  I  R  K  L  I  A  T  V  N  F  R  P  L  S  H  L  R  M  K  I  G  H  H  S  P  T  S  T  R  S  K  R  G  I  K  T  C  M  V  N  C  F  S  V  A  F  Q  T  T  E  N  R  Y  Q  S  M  E  V  *  Q  D  Y  C  S  N  P  L  L  F  *  N  A  W  S  L  Y  H  S  C  P  Y  E  F  V  A  M  P  E  *  S  W  L  L  Y  I  *  K  Y  R  N  R  G  *  S  R  S  S  D  T  G  A  A  K  P  T  S  F  F  A  R  V  F  V  L  Q  N  S  L  N  I  N  T  *  N  F </first_frame>
            <second_frame>  R  H  R  N  A  C  L  Y  L  E  A  I  K  S  P  K  K  S  G  S  *  L  P  L  L  T  A  C  L  Y  L  E  A  I  K  S  P  K  K  S  G  N  *  L  R  L  L  T  S  V  P  C  H  I  *  E  *  R  *  D  T  I  L  Q  L  P  Q  E  V  N  E  G  S  R  H  A  W  *  I  V  F  Q  *  P  F  K  P  L  K  I  V  I  N  Q  W  R  F  D  R  I  I  A  Q  I  H  C  S  F  K  M  H  G  V  C  T  I  H  V  L  M  N  L  L  R  C  Q  S  K  V  G  C  Y  I  S  R  S  T  E  T  G  A  E  V  E  A  Q  I  R  V  Q  P  N  P  L  V  F  L  L  V  Y  L  C  Y  K  I  H  *  I  *  T  H  K  I   </second_frame>
            <third_frame>   V  I  G  M  L  V  Y  T  W  R  P  S  S  H  L  K  S  Q  E  V  D  C  H  C  *  L  L  V  Y  T  W  R  P  S  N  R  L  K  N  Q  E  I  D  C  D  C  *  L  P  S  L  V  T  F  E  N  E  D  R  T  P  F  S  N  F  H  K  K  *  T  R  D  Q  D  M  H  G  E  L  F  F  S  S  L  S  N  H  *  K  S  L  S  I  N  G  G  L  T  G  L  L  L  K  S  I  A  L  L  K  C  M  E  S  V  P  F  M  S  L  *  I  C  C  D  A  R  V  K  L  V  A  I  Y  L  E  V  Q  K  Q  G  L  K  *  K  L  R  Y  G  C  S  Q  T  H  *  F  F  C  S  C  I  C  V  T  K  F  I  E  Y  K  H  I  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18838" stop="18587"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFKPLKIVINQWRFDRIIAQIHCSFKMHGVCTIHVLMNLLRCQSKVGCYISRSTETGAEVEAQIRVQPNPLVFLLVYLCYKIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="27021" PGL_stop="23670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27021" e_stop="26483"/>
            <exon e_start="23756" e_stop="23670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.458" e_score="0.957"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="27021" e_stop="26483" e_length="539"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.458">
            <gDNA_intron_boundary i_start="26482" i_stop="23757" i_length="2726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23756" e_stop="23670" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27021" stop="26483"/>
              <exon start="23756" stop="23670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACTAATAATAACCGAAAGAAAAAAAAAATCTGTTTTACGTATTTCCGTAATTGATAATTGTACAATCTCACCATGTCGGTTTGTACTCGCCGGATAATCACCGGCGAATTGTCGTCGCCGATAGCAAGGTATCATATTCCGGTAACAAAACTTCCAGCTGTCCGGTCACCGGATTATCTCTCTTCCACATCTGTTCGTCATTTCATAAGCAATACTCGCCGGCCGAACTCAATCGTTAGCAGATCAAGGAGAACGAAATTCTACGTAATTGCGGTAGCGGAATCGACCGGTGTGTTCCGCCGCGGCGGACGCGATGGCGGAGAGAATGGGGAATGGAGGACGAGGAGGAGGTGTGCGGTGGGAGATCAAGTTGTGGAGATTAATGAGAACCGGAAAAGTAGTAATCGACTGGCGGAGGTGGCGGTTGCAGCGACGGCTACGGTGGTGCTAGGTGTAGGGAATCGCGTGCTTTACAAGTTGGCGTTAGTGCCTTTGAAGAACTATCCTTTCTTCTTGGCTCAACTTGCCACTTTCGG : ATATGTACTCATATACTTCTCTATCTTATACGTACGGTATCATACTGGCAAGGTTACTGATGAAATGCTTTCCCTTCCAAAAATTCC</gDNA_template>
            <first_frame> I  T  N  N  N  R  K  K  K  K  I  C  F  T  Y  F  R  N  *  *  L  Y  N  L  T  M  S  V  C  T  R  R  I  I  T  G  E  L  S  S  P  I  A  R  Y  H  I  P  V  T  K  L  P  A  V  R  S  P  D  Y  L  S  S  T  S  V  R  H  F  I  S  N  T  R  R  P  N  S  I  V  S  R  S  R  R  T  K  F  Y  V  I  A  V  A  E  S  T  G  V  F  R  R  G  G  R  D  G  G  E  N  G  E  W  R  T  R  R  R  C  A  V  G  D  Q  V  V  E  I  N  E  N  R  K  S  S  N  R  L  A  E  V  A  V  A  A  T  A  T  V  V  L  G  V  G  N  R  V  L  Y  K  L  A  L  V  P  L  K  N  Y  P  F  F  L  A  Q  L  A  T  F  G :   Y  V  L  I  Y  F  S  I  L  Y  V  R  Y  H  T  G  K  V  T  D  E  M  L  S  L  P  K  I   </first_frame>
            <second_frame>  L  L  I  I  T  E  R  K  K  K  S  V  L  R  I  S  V  I  D  N  C  T  I  S  P  C  R  F  V  L  A  G  *  S  P  A  N  C  R  R  R  *  Q  G  I  I  F  R  *  Q  N  F  Q  L  S  G  H  R  I  I  S  L  P  H  L  F  V  I  S  *  A  I  L  A  G  R  T  Q  S  L  A  D  Q  G  E  R  N  S  T  *  L  R  *  R  N  R  P  V  C  S  A  A  A  D  A  M  A  E  R  M  G  N  G  G  R  G  G  G  V  R  W  E  I  K  L  W  R  L  M  R  T  G  K  V  V  I  D  W  R  R  W  R  L  Q  R  R  L  R  W  C  *  V  *  G  I  A  C  F  T  S  W  R  *  C  L  *  R  T  I  L  S  S  W  L  N  L  P  L  S   : D  M  Y  S  Y  T  S  L  S  Y  T  Y  G  I  I  L  A  R  L  L  M  K  C  F  P  F  Q  K  F  </second_frame>
            <third_frame>   Y  *  *  *  P  K  E  K  K  N  L  F  Y  V  F  P  *  L  I  I  V  Q  S  H  H  V  G  L  Y  S  P  D  N  H  R  R  I  V  V  A  D  S  K  V  S  Y  S  G  N  K  T  S  S  C  P  V  T  G  L  S  L  F  H  I  C  S  S  F  H  K  Q  Y  S  P  A  E  L  N  R  *  Q  I  K  E  N  E  I  L  R  N  C  G  S  G  I  D  R  C  V  P  P  R  R  T  R  W  R  R  E  W  G  M  E  D  E  E  E  V  C  G  G  R  S  S  C  G  D  *  *  E  P  E  K  *  *  S  T  G  G  G  G  G  C  S  D  G  Y  G  G  A  R  C  R  E  S  R  A  L  Q  V  G  V  S  A  F  E  E  L  S  F  L  L  G  S  T  C  H  F  R  :  I  C  T  H  I  L  L  Y  L  I  R  T  V  S  Y  W  Q  G  Y  *  *  N  A  F  P  S  K  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26961" stop="26483"/>
                    <exon start="23756" stop="23672"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYNLTMSVCTRRIITGELSSPIARYHIPVTKLPAVRSPDYLSSTSVRHFISNTRRPNSIVSRSRRTKFYVIAVAESTGVFRRGGRDGGENGEWRTRRRCAVGDQVVEINENRKSSNRLAEVAVAATATVVLGVGNRVLYKLALVPLKNYPFFLAQLATFGYVLIYFSILYVRYHTGKVTDEMLSLPKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="32742" PGL_stop="28049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32742" e_stop="32523"/>
            <exon e_start="32436" e_stop="32368"/>
            <exon e_start="28909" e_stop="28816"/>
            <exon e_start="28593" e_stop="28049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="0.972"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="32742" e_stop="32523" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="32522" i_stop="32437" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32436" e_stop="32368" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28909" e_stop="28816" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.962">
            <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="28593" e_stop="28049" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32742" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32742" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32742" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32739" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425857" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32734" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32706" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596745" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32702" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32700" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32699" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32699" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32696" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32696" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32695" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32693" stop="32523"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28872" stop="28816"/>
              <exon start="28593" stop="28049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTTTCAAACCCCCTAAGGAGCAAAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCCGGCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAA : ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG : TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG : CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACTGTACACACCACTACCCTCTCTAGACTCTACTTGTGGGGTTGCACGAGGTTTGTTATTGTTGCATAATGTGTTAGGTATCTGCTTTGGAACCTTACTCATTACTCATTAGAGTTCGTGCTGGGAAGTTCCACTTTGGGGCTTAACGCTCTTTACTAAGAGCGATTTTATCCTCAAGATCGAACTCAAAATCTTCTCTTAATGATTA</gDNA_template>
            <first_frame> T  F  Q  T  P  *  G  A  K  I  E  N  L  A  G  R  P  L  N  L  A  P  A  S  T  V  T  E  R  T  L  D  *  Q  L  Y  I  H  I  F  I  Y  S  R  Y  R  E  K  K  N  G  V  Y  H  F  L  G  *  F  C  *  E  I  R  T  V  V  S  R  R  S  R  E   : N  S  L  C  D  E  I  Q  T  F  *  W  *  I  G  S  Q  G  H  *  *  *  R   : V  Y  Q  V  *  D  *  P  S  P  R  C  Q  E  D  G  E  T  *  Q  H  F  F  Y  L  D  V  S  W  S  R  R :   *  Y  I  *  S  G  W  Q  R  T  D  G  G  T  S  T  *  E  R  K  R  K  E  T  I  I  L  R  W  V  C  C  C  N  S  L  T  A  V  K  I  N  F  *  N  L  Q  G  I  F  L  S  N  F  F  L  Y  Y  *  W  N  R  S  F  L  L  F  E  D  S  P  F  N  L  Q  A  L  I  S  Y  S  L  F  I  F  A  E  L  N  L  R  I  N  *  L  D  *  T  N  V  I  Q  V  A  F  L  Y  P  I  M  F  K  T  V  H  T  T  T  L  S  R  L  Y  L  W  G  C  T  R  F  V  I  V  A  *  C  V  R  Y  L  L  W  N  L  T  H  Y  S  L  E  F  V  L  G  S  S  T  L  G  L  N  A  L  Y  *  E  R  F  Y  P  Q  D  R  T  Q  N  L  L  L  M  I  </first_frame>
            <second_frame>  L  F  K  P  P  K  E  Q  K  L  K  T  S  P  A  G  H  *  I  *  L  R  R  Q  Q  S  P  R  E  R  S  I  S  S  Y  I  Y  I  Y  L  Y  I  A  D  T  E  R  R  R  M  V  Y  I  T  S  W  D  D  F  V  E  R  S  V  Q  L  F  R  A  D  P  E  K  :  T  R  Y  V  M  K  Y  R  H  S  D  G  K  L  V  L  K  V  T  D  D  K  E  :  C  I  K  F  K  T  D  Q  A  Q  D  A  K  K  M  E  K  L  N  N  I  F  F  T  L  M  S  R  G  P  D   : A  D  I  S  E  V  G  G  K  E  Q  M  E  A  Q  A  P  K  K  G  R  G  R  K  Q  *  F  F  D  G  F  V  A  A  T  L  L  L  L  *  R  *  I  F  E  T  C  K  E  F  F  S  P  T  S  F  C  I  I  S  G  T  D  L  F  C  F  L  K  I  A  L  L  I  C  K  L  *  Y  L  I  A  Y  L  S  L  Q  S  *  T  *  G  *  T  N  *  T  R  Q  M  L  S  K  *  P  F  C  I  P  *  C  L  R  L  Y  T  P  L  P  S  L  D  S  T  C  G  V  A  R  G  L  L  L  L  H  N  V  L  G  I  C  F  G  T  L  L  I  T  H  *  S  S  C  W  E  V  P  L  W  G  L  T  L  F  T  K  S  D  F  I  L  K  I  E  L  K  I  F  S  *  *  L </second_frame>
            <third_frame>   F  S  N  P  L  R  S  K  N  *  K  P  R  R  P  A  T  E  F  S  S  G  V  N  S  H  R  E  N  A  R  L  A  V  I  Y  T  Y  I  Y  I  *  Q  I  Q  R  E  E  E  W  C  I  S  L  P  G  M  I  L  L  R  D  P  Y  S  C  F  A  P  I  P  R  K :   L  A  M  *  *  N  T  D  I  L  M  V  N  W  F  S  R  S  L  M  I  K  S :   V  S  S  L  R  L  T  K  P  K  M  P  R  R  W  R  N  L  T  T  F  F  L  P  *  C  L  V  V  Q  T  :  L  I  Y  L  K  W  V  A  K  N  R  W  R  H  K  H  L  R  K  E  E  E  G  N  N  N  S  S  M  G  L  L  L  Q  L  S  Y  C  C  E  D  K  F  L  K  P  A  R  N  F  S  L  Q  L  L  F  V  L  L  V  E  Q  I  F  F  A  F  *  R  *  P  F  *  F  A  S  S  D  I  L  *  L  I  Y  L  C  R  A  K  L  E  D  K  L  T  R  L  D  K  C  Y  P  S  S  L  F  V  S  H  N  V  *  D  C  T  H  H  Y  P  L  *  T  L  L  V  G  L  H  E  V  C  Y  C  C  I  M  C  *  V  S  A  L  E  P  Y  S  L  L  I  R  V  R  A  G  K  F  H  F  G  A  *  R  S  L  L  R  A  I  L  S  S  R  S  N  S  K  S  S  L  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32681" stop="32523"/>
                    <exon start="32436" stop="32368"/>
                    <exon start="28909" stop="28816"/>
                    <exon start="28593" stop="28517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRQQSPRERSISSYIYIYLYIADTERRRMVYITSWDDFVERSVQLFRADPEKTRYVMKYRHSDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNIFFTLMSRGPDADISEVGGKEQMEAQAPKKGRGRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28896" e_stop="28726"/>
            <exon e_start="28675" e_stop="28254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.965"/>
          <exon-only e_score="0.879"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="28896" e_stop="28726" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28725" i_stop="28676" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.879">
            <gDNA_exon_boundary e_start="28675" e_stop="28254" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28896" stop="28726"/>
              <exon start="28675" stop="28397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28893" stop="28726"/>
              <exon start="28675" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434017" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28893" stop="28726"/>
              <exon start="28675" stop="28254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACGGTATTACTTTTTCAAACTTTCTTCACATGGTACCTTGTTTGTTTGGTATAAGTAACATCCAATGACAATCTAATCTTTACTAATTACTCG : GAAGTTTTATTCGATACTTGCATAGTTGCATCTCCCTGATGCTCCAGTCAATGTAATGCTCTGCAAGTTCTTTTCGTTGCAGCTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACT</gDNA_template>
            <first_frame> R  L  T  K  P  K  M  P  R  R  W  R  N  L  T  T  F  F  L  P  *  C  L  V  V  Q  T  V  L  L  F  Q  T  F  F  T  W  Y  L  V  C  L  V  *  V  T  S  N  D  N  L  I  F  T  N  Y  S  :  E  V  L  F  D  T  C  I  V  A  S  P  *  C  S  S  Q  C  N  A  L  Q  V  L  F  V  A  A  D  I  S  E  V  G  G  K  E  Q  M  E  A  Q  A  P  K  K  G  R  G  R  K  Q  *  F  F  D  G  F  V  A  A  T  L  L  L  L  *  R  *  I  F  E  T  C  K  E  F  F  S  P  T  S  F  C  I  I  S  G  T  D  L  F  C  F  L  K  I  A  L  L  I  C  K  L  *  Y  L  I  A  Y  L  S  L  Q  S  *  T  *  G  *  T  N  *  T  R  Q  M  L  S  K  *  P  F  C  I  P  *  C  L  R   </first_frame>
            <second_frame>  D  *  P  S  P  R  C  Q  E  D  G  E  T  *  Q  H  F  F  Y  L  D  V  S  W  S  R  R  Y  Y  F  F  K  L  S  S  H  G  T  L  F  V  W  Y  K  *  H  P  M  T  I  *  S  L  L  I  T  R :   K  F  Y  S  I  L  A  *  L  H  L  P  D  A  P  V  N  V  M  L  C  K  F  F  S  L  Q  L  I  Y  L  K  W  V  A  K  N  R  W  R  H  K  H  L  R  K  E  E  E  G  N  N  N  S  S  M  G  L  L  L  Q  L  S  Y  C  C  E  D  K  F  L  K  P  A  R  N  F  S  L  Q  L  L  F  V  L  L  V  E  Q  I  F  F  A  F  *  R  *  P  F  *  F  A  S  S  D  I  L  *  L  I  Y  L  C  R  A  K  L  E  D  K  L  T  R  L  D  K  C  Y  P  S  S  L  F  V  S  H  N  V  *  D  </second_frame>
            <third_frame>   T  D  Q  A  Q  D  A  K  K  M  E  K  L  N  N  I  F  F  T  L  M  S  R  G  P  D  G  I  T  F  S  N  F  L  H  M  V  P  C  L  F  G  I  S  N  I  Q  *  Q  S  N  L  Y  *  L  L   : G  S  F  I  R  Y  L  H  S  C  I  S  L  M  L  Q  S  M  *  C  S  A  S  S  F  R  C  S  *  Y  I  *  S  G  W  Q  R  T  D  G  G  T  S  T  *  E  R  K  R  K  E  T  I  I  L  R  W  V  C  C  C  N  S  L  T  A  V  K  I  N  F  *  N  L  Q  G  I  F  L  S  N  F  F  L  Y  Y  *  W  N  R  S  F  L  L  F  E  D  S  P  F  N  L  Q  A  L  I  S  Y  S  L  F  I  F  A  E  L  N  L  R  I  N  *  L  D  *  T  N  V  I  Q  V  A  F  L  Y  P  I  M  F  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28650" stop="28390"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHLPDAPVNVMLCKFFSLQLIYLKWVAKNRWRHKHLRKEEEGNNNSSMGLLLQLSYCCEDKFLKPARNFSLQLLFVLLVEQIFFAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32718" e_stop="32517"/>
            <exon e_start="32436" e_stop="32368"/>
            <exon e_start="28909" e_stop="28816"/>
            <exon e_start="28593" e_stop="28049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.962" e_score="0.989"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="32718" e_stop="32517" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="32516" i_stop="32437" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32436" e_stop="32368" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="32367" i_stop="28910" i_length="3458"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="28909" e_stop="28816" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.962">
            <gDNA_intron_boundary i_start="28815" i_stop="28594" i_length="222"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="28593" e_stop="28049" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32718" stop="32517"/>
              <exon start="32436" stop="32368"/>
              <exon start="28909" stop="28816"/>
              <exon start="28593" stop="28267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28872" stop="28816"/>
              <exon start="28593" stop="28049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTGAAAACCTCGCCGGCCGGCCACTGAATTTAGCTCCGGCGTCAACAGTCACCGAGAGAACGCTCGATTAGCAGTTATATATACATATATTTATATATAGCAGATACAGAGAGAAGAAGAATGGTGTATATCACTTCCTGGGATGATTTTGTTGAGAGATCCGTACAGTTGTTTCGCGCCGATCCCGAGAAAGTAAGT : ACTCGCTATGTGATGAAATACAGACATTCTGATGGTAAATTGGTTCTCAAGGTCACTGATGATAAAGAG : TGTATCAAGTTTAAGACTGACCAAGCCCAAGATGCCAAGAAGATGGAGAAACTTAACAACATTTTTTTTACCTTGATGTCTCGTGGTCCAGACG : CTGATATATCTGAAGTGGGTGGCAAAGAACAGATGGAGGCACAAGCACCTAAGAAAGGAAGAGGAAGGAAACAATAATTCTTCGATGGGTTTGTTGCTGCAACTCTCTTACTGCTGTGAAGATAAATTTTTGAAACCTGCAAGGAATTTTTCTCTCCAACTTCTTTTTGTATTATTAGTGGAACAGATCTTTTTTGCTTTTTGAAGATAGCCCTTTTAATTTGCAAGCTCTGATATCTTATAGCTTATTTATCTTTGCAGAGCTAAACTTGAGGATAAACTAACTAGACTAGACAAATGTTATCCAAGTAGCCTTTTTGTATCCCATAATGTTTAAGACTGTACACACCACTACCCTCTCTAGACTCTACTTGTGGGGTTGCACGAGGTTTGTTATTGTTGCATAATGTGTTAGGTATCTGCTTTGGAACCTTACTCATTACTCATTAGAGTTCGTGCTGGGAAGTTCCACTTTGGGGCTTAACGCTCTTTACTAAGAGCGATTTTATCCTCAAGATCGAACTCAAAATCTTCTCTTAATGATTA</gDNA_template>
            <first_frame> K  I  E  N  L  A  G  R  P  L  N  L  A  P  A  S  T  V  T  E  R  T  L  D  *  Q  L  Y  I  H  I  F  I  Y  S  R  Y  R  E  K  K  N  G  V  Y  H  F  L  G  *  F  C  *  E  I  R  T  V  V  S  R  R  S  R  E  S  K   : Y  S  L  C  D  E  I  Q  T  F  *  W  *  I  G  S  Q  G  H  *  *  *  R   : V  Y  Q  V  *  D  *  P  S  P  R  C  Q  E  D  G  E  T  *  Q  H  F  F  Y  L  D  V  S  W  S  R  R :   *  Y  I  *  S  G  W  Q  R  T  D  G  G  T  S  T  *  E  R  K  R  K  E  T  I  I  L  R  W  V  C  C  C  N  S  L  T  A  V  K  I  N  F  *  N  L  Q  G  I  F  L  S  N  F  F  L  Y  Y  *  W  N  R  S  F  L  L  F  E  D  S  P  F  N  L  Q  A  L  I  S  Y  S  L  F  I  F  A  E  L  N  L  R  I  N  *  L  D  *  T  N  V  I  Q  V  A  F  L  Y  P  I  M  F  K  T  V  H  T  T  T  L  S  R  L  Y  L  W  G  C  T  R  F  V  I  V  A  *  C  V  R  Y  L  L  W  N  L  T  H  Y  S  L  E  F  V  L  G  S  S  T  L  G  L  N  A  L  Y  *  E  R  F  Y  P  Q  D  R  T  Q  N  L  L  L  M  I  </first_frame>
            <second_frame>  K  L  K  T  S  P  A  G  H  *  I  *  L  R  R  Q  Q  S  P  R  E  R  S  I  S  S  Y  I  Y  I  Y  L  Y  I  A  D  T  E  R  R  R  M  V  Y  I  T  S  W  D  D  F  V  E  R  S  V  Q  L  F  R  A  D  P  E  K  V  S  :  T  R  Y  V  M  K  Y  R  H  S  D  G  K  L  V  L  K  V  T  D  D  K  E  :  C  I  K  F  K  T  D  Q  A  Q  D  A  K  K  M  E  K  L  N  N  I  F  F  T  L  M  S  R  G  P  D   : A  D  I  S  E  V  G  G  K  E  Q  M  E  A  Q  A  P  K  K  G  R  G  R  K  Q  *  F  F  D  G  F  V  A  A  T  L  L  L  L  *  R  *  I  F  E  T  C  K  E  F  F  S  P  T  S  F  C  I  I  S  G  T  D  L  F  C  F  L  K  I  A  L  L  I  C  K  L  *  Y  L  I  A  Y  L  S  L  Q  S  *  T  *  G  *  T  N  *  T  R  Q  M  L  S  K  *  P  F  C  I  P  *  C  L  R  L  Y  T  P  L  P  S  L  D  S  T  C  G  V  A  R  G  L  L  L  L  H  N  V  L  G  I  C  F  G  T  L  L  I  T  H  *  S  S  C  W  E  V  P  L  W  G  L  T  L  F  T  K  S  D  F  I  L  K  I  E  L  K  I  F  S  *  *  L </second_frame>
            <third_frame>   N  *  K  P  R  R  P  A  T  E  F  S  S  G  V  N  S  H  R  E  N  A  R  L  A  V  I  Y  T  Y  I  Y  I  *  Q  I  Q  R  E  E  E  W  C  I  S  L  P  G  M  I  L  L  R  D  P  Y  S  C  F  A  P  I  P  R  K  *  V :   L  A  M  *  *  N  T  D  I  L  M  V  N  W  F  S  R  S  L  M  I  K  S :   V  S  S  L  R  L  T  K  P  K  M  P  R  R  W  R  N  L  T  T  F  F  L  P  *  C  L  V  V  Q  T  :  L  I  Y  L  K  W  V  A  K  N  R  W  R  H  K  H  L  R  K  E  E  E  G  N  N  N  S  S  M  G  L  L  L  Q  L  S  Y  C  C  E  D  K  F  L  K  P  A  R  N  F  S  L  Q  L  L  F  V  L  L  V  E  Q  I  F  F  A  F  *  R  *  P  F  *  F  A  S  S  D  I  L  *  L  I  Y  L  C  R  A  K  L  E  D  K  L  T  R  L  D  K  C  Y  P  S  S  L  F  V  S  H  N  V  *  D  C  T  H  H  Y  P  L  *  T  L  L  V  G  L  H  E  V  C  Y  C  C  I  M  C  *  V  S  A  L  E  P  Y  S  L  L  I  R  V  R  A  G  K  F  H  F  G  A  *  R  S  L  L  R  A  I  L  S  S  R  S  N  S  K  S  S  L  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32681" stop="32517"/>
                    <exon start="32436" stop="32368"/>
                    <exon start="28909" stop="28816"/>
                    <exon start="28593" stop="28517"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRRQQSPRERSISSYIYIYLYIADTERRRMVYITSWDDFVERSVQLFRADPEKVSTRYVMKYRHSDGKLVLKVTDDKECIKFKTDQAQDAKKMEKLNNIFFTLMSRGPDADISEVGGKEQMEAQAPKKGRGRKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="42397" PGL_stop="33167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42397" e_stop="42140"/>
            <exon e_start="41471" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="37115" e_stop="36982"/>
            <exon e_start="36880" e_stop="36775"/>
            <exon e_start="36502" e_stop="36417"/>
            <exon e_start="35601" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="34067"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33530" e_stop="33167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.973" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42397" e_stop="42140" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.362">
            <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41471" e_stop="41404" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="37115" e_stop="36982" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="36880" e_stop="36775" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="36502" e_stop="36417" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="35413" e_length="189"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="34067" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.912">
            <gDNA_exon_boundary e_start="33530" e_stop="33167" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42397" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42352" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42318" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42264" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42221" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="41004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40958" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36775"/>
              <exon start="36502" stop="36433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36818" stop="36775"/>
              <exon start="36502" stop="36417"/>
              <exon start="35601" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35519" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35477" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="33610"/>
              <exon start="33530" stop="33279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33718" stop="33610"/>
              <exon start="33530" stop="33167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA : GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT : GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGG</gDNA_template>
            <first_frame> K  G  Q  V  Y  V  G  W  K  I  M  K  E  P  R  K  L  C  F  S  V  S  T  P  K  R  D  L  Y  N  H  I  F  H  S  I  P  S  T  L  *  L  F  I  C  I  F  S  L  S  T  D  S  F  L  F  L  L  H  F  I  D  L  L  C  L  Q  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  I  A  Q  A  L  E  Y  C  T  G  K  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  G  E  :  D  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  I  F  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  E  M  L  T  D  S  C  L  E  G  Q  F  S  T  D  D  G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  F :   R  N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W </first_frame>
            <second_frame>  K  D  K  F  M  *  G  G  K  S  *  K  S  H  E  N  C  A  L  V  L  V  L  Q  R  G  I  C  T  I  T  F  F  I  L  S  H  L  L  C  N  C  L  Y  V  Y  S  H  F  L  L  T  P  F  S  F  F  S  T  L  L  I  F  C  V  Y  S  *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  Q  *  S  G  Q  C  G  *  G  W  R  C  I  L  H  R  L  L  N  I  V  Q  A  K  D  V  L  F  I  M  I  L  M  L  I  E  Y  Y  S  E  K :   M  E  I  P  D  F  L  A  L  V  *  *  R  T  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  V  E  S  P  Q  R  V  *  Y  L  A  L  G  H  F  C  L  T  F  *  V  E  S  T  S  L  L  V  M :   H  W  I  *  *  K  T  G  I  L  R  C  *  L  I  L  A  W  R  V  N  F  L  L  M  T  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  S :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : S  E  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y   </second_frame>
            <third_frame>   R  T  S  L  C  R  V  E  N  H  E  R  A  T  K  I  V  L  *  C  *  Y  S  K  E  G  S  V  Q  S  H  F  S  F  Y  P  I  Y  S  V  I  V  Y  M  Y  I  L  T  F  Y  *  L  L  S  L  S  S  P  L  Y  *  S  F  V  S  T  V  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  N  E  V  G  N  A  V  K  G  G  V  V  Y  C  T  G  S  *  I  L  Y  R  Q  R  T  C  S  L  S  *  S  *  C  L  *  N  I  I  R  R   : R  W  R  S  P  T  F  L  L  W  F  D  E  E  Q  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   *  N  H  P  R  E  C  D  I  *  L  W  D  T  F  A  *  P  S  E  W  K  A  H  P  S  *  S   : C  T  G  S  D  K  R  P  E  S  *  D  A  N  *  F  L  L  G  G  S  I  F  Y  *  *  R  N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  Q  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="37115" stop="36982"/>
                    <exon start="36880" stop="36775"/>
                    <exon start="36502" stop="36417"/>
                    <exon start="35601" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="34067"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRLRVALYIAQALEYCTGKGRALYHDLNAYRILFGEDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVIFSFGTLLLDLLSGKHIPPSHALDLIKDRNLEMLTDSCLEGQFSTDDGTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33460" stop="33188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42397" e_stop="42140"/>
            <exon e_start="41471" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="37115" e_stop="36982"/>
            <exon e_start="36880" e_stop="36775"/>
            <exon e_start="36502" e_stop="36417"/>
            <exon e_start="35601" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="34067"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33527" e_stop="33370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.973" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42397" e_stop="42140" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.362">
            <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41471" e_stop="41404" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="37115" e_stop="36982" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="36880" e_stop="36775" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="36502" e_stop="36417" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="35413" e_length="189"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="34067" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33528" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="0.994">
            <gDNA_exon_boundary e_start="33527" e_stop="33370" e_length="158"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42397" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42352" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42318" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42264" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42221" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="41004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40958" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36775"/>
              <exon start="36502" stop="36433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36818" stop="36775"/>
              <exon start="36502" stop="36417"/>
              <exon start="35601" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35519" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35477" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34122" stop="34067"/>
              <exon start="33875" stop="33610"/>
              <exon start="33527" stop="33370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA : GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT : GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGA</gDNA_template>
            <first_frame> K  G  Q  V  Y  V  G  W  K  I  M  K  E  P  R  K  L  C  F  S  V  S  T  P  K  R  D  L  Y  N  H  I  F  H  S  I  P  S  T  L  *  L  F  I  C  I  F  S  L  S  T  D  S  F  L  F  L  L  H  F  I  D  L  L  C  L  Q  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  I  A  Q  A  L  E  Y  C  T  G  K  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  G  E  :  D  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  I  F  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  E  M  L  T  D  S  C  L  E  G  Q  F  S  T  D  D  G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  L :   N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  </first_frame>
            <second_frame>  K  D  K  F  M  *  G  G  K  S  *  K  S  H  E  N  C  A  L  V  L  V  L  Q  R  G  I  C  T  I  T  F  F  I  L  S  H  L  L  C  N  C  L  Y  V  Y  S  H  F  L  L  T  P  F  S  F  F  S  T  L  L  I  F  C  V  Y  S  *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  Q  *  S  G  Q  C  G  *  G  W  R  C  I  L  H  R  L  L  N  I  V  Q  A  K  D  V  L  F  I  M  I  L  M  L  I  E  Y  Y  S  E  K :   M  E  I  P  D  F  L  A  L  V  *  *  R  T  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  V  E  S  P  Q  R  V  *  Y  L  A  L  G  H  F  C  L  T  F  *  V  E  S  T  S  L  L  V  M :   H  W  I  *  *  K  T  G  I  L  R  C  *  L  I  L  A  W  R  V  N  F  L  L  M  T  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  S :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : *  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R </second_frame>
            <third_frame>   R  T  S  L  C  R  V  E  N  H  E  R  A  T  K  I  V  L  *  C  *  Y  S  K  E  G  S  V  Q  S  H  F  S  F  Y  P  I  Y  S  V  I  V  Y  M  Y  I  L  T  F  Y  *  L  L  S  L  S  S  P  L  Y  *  S  F  V  S  T  V  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  N  E  V  G  N  A  V  K  G  G  V  V  Y  C  T  G  S  *  I  L  Y  R  Q  R  T  C  S  L  S  *  S  *  C  L  *  N  I  I  R  R   : R  W  R  S  P  T  F  L  L  W  F  D  E  E  Q  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   *  N  H  P  R  E  C  D  I  *  L  W  D  T  F  A  *  P  S  E  W  K  A  H  P  S  *  S   : C  T  G  S  D  K  R  P  E  S  *  D  A  N  *  F  L  L  G  G  S  I  F  Y  *  *  R  N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="37115" stop="36982"/>
                    <exon start="36880" stop="36775"/>
                    <exon start="36502" stop="36417"/>
                    <exon start="35601" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="34067"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRLRVALYIAQALEYCTGKGRALYHDLNAYRILFGEDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVIFSFGTLLLDLLSGKHIPPSHALDLIKDRNLEMLTDSCLEGQFSTDDGTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42371" e_stop="42338"/>
            <exon e_start="42196" e_stop="42140"/>
            <exon e_start="41471" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="37115" e_stop="36982"/>
            <exon e_start="36880" e_stop="36775"/>
            <exon e_start="36502" e_stop="36417"/>
            <exon e_start="35601" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="34067"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33530" e_stop="33167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.973" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42371" e_stop="42338" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42337" i_stop="42197" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42196" e_stop="42140" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.362">
            <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41471" e_stop="41404" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="37115" e_stop="36982" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="36880" e_stop="36775" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="36502" e_stop="36417" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="35413" e_length="189"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="34067" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="13" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79"/>
          </intron>
          <exon e_serial="14" e_score="0.912">
            <gDNA_exon_boundary e_start="33530" e_stop="33167" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42371" stop="42338"/>
              <exon start="42196" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40958" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36775"/>
              <exon start="36502" stop="36433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36818" stop="36775"/>
              <exon start="36502" stop="36417"/>
              <exon start="35601" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35519" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35477" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="33610"/>
              <exon start="33530" stop="33279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33718" stop="33610"/>
              <exon start="33530" stop="33167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCATGAAAGAGCCACGAAAATTGTGCTTTAGT : TTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA : GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT : GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGG</gDNA_template>
            <first_frame> N  H  E  R  A  T  K  I  V  L  *   : F  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  N  E  V  G  N  A  V  K  G  G  V  V  Y  C  T  G  S  *  I  L  Y  R  Q  R  T  C  S  L  S  *  S  *  C  L  *  N  I  I  R  R   : R  W  R  S  P  T  F  L  L  W  F  D  E  E  Q  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   *  N  H  P  R  E  C  D  I  *  L  W  D  T  F  A  *  P  S  E  W  K  A  H  P  S  *  S   : C  T  G  S  D  K  R  P  E  S  *  D  A  N  *  F  L  L  G  G  S  I  F  Y  *  *  R  N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  Q  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  </first_frame>
            <second_frame>  I  M  K  E  P  R  K  L  C  F  S  :  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  I  A  Q  A  L  E  Y  C  T  G  K  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  G  E  :  D  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  I  F  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  E  M  L  T  D  S  C  L  E  G  Q  F  S  T  D  D  G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  F :   R  N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W </second_frame>
            <third_frame>   S  *  K  S  H  E  N  C  A  L  V :   *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  Q  *  S  G  Q  C  G  *  G  W  R  C  I  L  H  R  L  L  N  I  V  Q  A  K  D  V  L  F  I  M  I  L  M  L  I  E  Y  Y  S  E  K :   M  E  I  P  D  F  L  A  L  V  *  *  R  T  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  V  E  S  P  Q  R  V  *  Y  L  A  L  G  H  F  C  L  T  F  *  V  E  S  T  S  L  L  V  M :   H  W  I  *  *  K  T  G  I  L  R  C  *  L  I  L  A  W  R  V  N  F  L  L  M  T  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  S :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : S  E  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="37115" stop="36982"/>
                    <exon start="36880" stop="36775"/>
                    <exon start="36502" stop="36417"/>
                    <exon start="35601" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="34067"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRLRVALYIAQALEYCTGKGRALYHDLNAYRILFGEDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVIFSFGTLLLDLLSGKHIPPSHALDLIKDRNLEMLTDSCLEGQFSTDDGTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33460" stop="33188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="42397" e_stop="42140"/>
            <exon e_start="41471" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="37115" e_stop="36982"/>
            <exon e_start="36880" e_stop="36775"/>
            <exon e_start="36502" e_stop="36417"/>
            <exon e_start="35601" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="33801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.973" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42397" e_stop="42140" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.362">
            <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41471" e_stop="41404" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="37115" e_stop="36982" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="36880" e_stop="36775" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="36502" e_stop="36417" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="35413" e_length="189"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="0.997">
            <gDNA_exon_boundary e_start="34180" e_stop="33801" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42397" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42352" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42318" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42264" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42221" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="41004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40958" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36775"/>
              <exon start="36502" stop="36433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36845" stop="36775"/>
              <exon start="36502" stop="36417"/>
              <exon start="35601" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="33801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA : GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT : GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTGGTAACCTGTCATGACTGCTTATGTTACACACTACTGTGCAATGTGGATCTATTCTATTGTTGAACTATTTCGTTATCTATTACTTTGCTTGCTCTTGCAGTTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATG</gDNA_template>
            <first_frame> K  G  Q  V  Y  V  G  W  K  I  M  K  E  P  R  K  L  C  F  S  V  S  T  P  K  R  D  L  Y  N  H  I  F  H  S  I  P  S  T  L  *  L  F  I  C  I  F  S  L  S  T  D  S  F  L  F  L  L  H  F  I  D  L  L  C  L  Q  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  I  A  Q  A  L  E  Y  C  T  G  K  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  G  E  :  D  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  I  F  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  E  M  L  T  D  S  C  L  E  G  Q  F  S  T  D  D  G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  V  R  N  P  L  S  S  S  K  P  A  C  I  F  L  S  Y  L  A  S  P  F  P  K  G  N  L  G  V  T  G  N  L  S  *  L  L  M  L  H  T  T  V  Q  C  G  S  I  L  L  L  N  Y  F  V  I  Y  Y  F  A  C  S  C  S  S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I   </first_frame>
            <second_frame>  K  D  K  F  M  *  G  G  K  S  *  K  S  H  E  N  C  A  L  V  L  V  L  Q  R  G  I  C  T  I  T  F  F  I  L  S  H  L  L  C  N  C  L  Y  V  Y  S  H  F  L  L  T  P  F  S  F  F  S  T  L  L  I  F  C  V  Y  S  *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  Q  *  S  G  Q  C  G  *  G  W  R  C  I  L  H  R  L  L  N  I  V  Q  A  K  D  V  L  F  I  M  I  L  M  L  I  E  Y  Y  S  E  K :   M  E  I  P  D  F  L  A  L  V  *  *  R  T  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  V  E  S  P  Q  R  V  *  Y  L  A  L  G  H  F  C  L  T  F  *  V  E  S  T  S  L  L  V  M :   H  W  I  *  *  K  T  G  I  L  R  C  *  L  I  L  A  W  R  V  N  F  L  L  M  T  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  R  L  E  I  H  Y  P  L  L  N  R  H  V  Y  S  *  A  I  W  L  P  P  F  R  R  G  T  L  A  *  L  V  T  C  H  D  C  L  C  Y  T  L  L  C  N  V  D  L  F  Y  C  *  T  I  S  L  S  I  T  L  L  A  L  A  V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  </second_frame>
            <third_frame>   R  T  S  L  C  R  V  E  N  H  E  R  A  T  K  I  V  L  *  C  *  Y  S  K  E  G  S  V  Q  S  H  F  S  F  Y  P  I  Y  S  V  I  V  Y  M  Y  I  L  T  F  Y  *  L  L  S  L  S  S  P  L  Y  *  S  F  V  S  T  V  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  N  E  V  G  N  A  V  K  G  G  V  V  Y  C  T  G  S  *  I  L  Y  R  Q  R  T  C  S  L  S  *  S  *  C  L  *  N  I  I  R  R   : R  W  R  S  P  T  F  L  L  W  F  D  E  E  Q  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   *  N  H  P  R  E  C  D  I  *  L  W  D  T  F  A  *  P  S  E  W  K  A  H  P  S  *  S   : C  T  G  S  D  K  R  P  E  S  *  D  A  N  *  F  L  L  G  G  S  I  F  Y  *  *  R  N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A  G  *  K  S  T  I  L  F  *  T  G  M  Y  I  P  K  L  S  G  F  P  L  S  E  G  E  P  W  R  N  W  *  P  V  M  T  A  Y  V  T  H  Y  C  A  M  W  I  Y  S  I  V  E  L  F  R  Y  L  L  L  C  L  L  L  Q  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="37115" stop="36982"/>
                    <exon start="36880" stop="36775"/>
                    <exon start="36502" stop="36417"/>
                    <exon start="35601" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="33962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRLRVALYIAQALEYCTGKGRALYHDLNAYRILFGEDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVIFSFGTLLLDLLSGKHIPPSHALDLIKDRNLEMLTDSCLEGQFSTDDGTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQVRNPLSSSKPACIFLSYLASPFPKGNLGVTGNLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="42202" e_stop="42140"/>
            <exon e_start="41554" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="37115" e_stop="36982"/>
            <exon e_start="36880" e_stop="36775"/>
            <exon e_start="36502" e_stop="36417"/>
            <exon e_start="35601" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="34067"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33530" e_stop="33167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.414" e_score="0.984"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="0.940"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.973" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="42202" e_stop="42140" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.414">
            <gDNA_intron_boundary i_start="42139" i_stop="41555" i_length="585"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="41554" e_stop="41404" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="37116" i_length="2923"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="37115" e_stop="36982" e_length="134"/>
          </exon>
          <intron i_serial="6" don_prob="0.975" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36981" i_stop="36881" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="0.981">
            <gDNA_exon_boundary e_start="36880" e_stop="36775" e_length="106"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36774" i_stop="36503" i_length="272"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="36502" e_stop="36417" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36416" i_stop="35602" i_length="815"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="35601" e_stop="35413" e_length="189"/>
          </exon>
          <intron i_serial="9" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="34067" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="12" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79"/>
          </intron>
          <exon e_serial="13" e_score="0.912">
            <gDNA_exon_boundary e_start="33530" e_stop="33167" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42202" stop="42140"/>
              <exon start="41554" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40958" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36775"/>
              <exon start="36502" stop="36433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40783" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="37115" stop="36982"/>
              <exon start="36880" stop="36846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36818" stop="36775"/>
              <exon start="36502" stop="36417"/>
              <exon start="35601" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35519" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35477" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="33610"/>
              <exon start="33530" stop="33279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33718" stop="33610"/>
              <exon start="33530" stop="33167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AGTTCAGGTGGTGGTGAAGTTTTCTGTTTATTCAGTTGAAAAAGGAAGCTTTTTGATGGGGGTTGAATTTGGTTTCTTTGCAGAAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCAATGAAGTGGGCAATGCGGTTAAGGGTGGCGTTGTATATTGCACAGGCTCTTGAATATTGTACAGGCAAAGGACGTGCTCTTTATCATGATCTTAATGCTTATAGAATATTATTCGGAGAA : GATGGAGATCCCCGACTTTCTTGCTTTGGTTTGATGAAGAACAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GTAGAATCACCCCAGAGAGTGTGATATTTAGCTTTGGGACACTTTTGCTTGACCTTCTGAGTGGAAAGCACATCCCTCCTAGTCAT : GCACTGGATCTGATAAAAGACCGGAATCTTGAGATGCTAACTGATTCTTGCTTGGAGGGTCAATTTTCTACTGATGACGGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGG</gDNA_template>
            <first_frame> L  Q  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  S  S  G  G  G  E  V  F  C  L  F  S  *  K  R  K  L  F  D  G  G  *  I  W  F  L  C  R  K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  Q  *  S  G  Q  C  G  *  G  W  R  C  I  L  H  R  L  L  N  I  V  Q  A  K  D  V  L  F  I  M  I  L  M  L  I  E  Y  Y  S  E  K :   M  E  I  P  D  F  L  A  L  V  *  *  R  T  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  V  E  S  P  Q  R  V  *  Y  L  A  L  G  H  F  C  L  T  F  *  V  E  S  T  S  L  L  V  M :   H  W  I  *  *  K  T  G  I  L  R  C  *  L  I  L  A  W  R  V  N  F  L  L  M  T  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  S :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : S  E  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y   </first_frame>
            <second_frame>  Y  S  *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   V  Q  V  V  V  K  F  S  V  Y  S  V  E  K  G  S  F  L  M  G  V  E  F  G  F  F  A  E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  N  E  V  G  N  A  V  K  G  G  V  V  Y  C  T  G  S  *  I  L  Y  R  Q  R  T  C  S  L  S  *  S  *  C  L  *  N  I  I  R  R   : R  W  R  S  P  T  F  L  L  W  F  D  E  E  Q  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   *  N  H  P  R  E  C  D  I  *  L  W  D  T  F  A  *  P  S  E  W  K  A  H  P  S  *  S   : C  T  G  S  D  K  R  P  E  S  *  D  A  N  *  F  L  L  G  G  S  I  F  Y  *  *  R  N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  Q  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  </second_frame>
            <third_frame>   T  V  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  F  R  W  W  *  S  F  L  F  I  Q  L  K  K  E  A  F  *  W  G  L  N  L  V  S  L  Q  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  I  A  Q  A  L  E  Y  C  T  G  K  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  G  E  :  D  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  I  F  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  E  M  L  T  D  S  C  L  E  G  Q  F  S  T  D  D  G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  F :   R  N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="37115" stop="36982"/>
                    <exon start="36880" stop="36775"/>
                    <exon start="36502" stop="36417"/>
                    <exon start="35601" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="34067"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRLRVALYIAQALEYCTGKGRALYHDLNAYRILFGEDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVIFSFGTLLLDLLSGKHIPPSHALDLIKDRNLEMLTDSCLEGQFSTDDGTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33460" stop="33188"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42192" stop="42140"/>
                    <exon start="41554" stop="41404"/>
                    <exon start="41108" stop="41082"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKQRITNLLHCQQELLFGVQVVVKFSVYSVEKGSFLMGVEFGFFAEKVCVLEFITWIFSSLSFDMILKPNADLEAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="42397" e_stop="42140"/>
            <exon e_start="41471" e_stop="41404"/>
            <exon e_start="41108" e_stop="40927"/>
            <exon e_start="40843" e_stop="40626"/>
            <exon e_start="40174" e_stop="40039"/>
            <exon e_start="39287" e_stop="39225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.362" e_score="1.000"/>
          <exon-intron don_prob="0.637" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42397" e_stop="42140" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.362">
            <gDNA_intron_boundary i_start="42139" i_stop="41472" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41471" e_stop="41404" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.637" acc_prob="0.986">
            <gDNA_intron_boundary i_start="41403" i_stop="41109" i_length="295"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41108" e_stop="40927" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.797">
            <gDNA_intron_boundary i_start="40926" i_stop="40844" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40843" e_stop="40626" e_length="218"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.925">
            <gDNA_intron_boundary i_start="40625" i_stop="40175" i_length="451"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40174" e_stop="40039" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40038" i_stop="39288" i_length="751"/>
          </intron>
          <exon e_serial="6" e_score="0.921">
            <gDNA_exon_boundary e_start="39287" e_stop="39225" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42397" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42352" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42318" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42264" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42221" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="41004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40039"/>
              <exon start="39287" stop="39225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42185" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42178" stop="42140"/>
              <exon start="41471" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41447" stop="41404"/>
              <exon start="41108" stop="40927"/>
              <exon start="40843" stop="40626"/>
              <exon start="40174" stop="40116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGACAAGTTTATGTAGGGTGGAAAATCATGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATATGTATATTCTCACTTTCTACTGACTCCTTTCTCTTTCTTCTCCACTTTATTGATCTTTTGTGTCTACAGTTAATTTAAACAAAGAATCACGAATTTACTCCACTGTCAGCAGGAGCTGTTATTTGG : AAAAAGTTTGTGTTTTGGAATTTATAACGTGGATTTTCAGTTCACTCAGCTTTGATATGATATTAAAG : CCAAATGCAGATCTTGAAGCCGCATAAAGTGTAATTTGTCGGGTTGTGCTACAAACTCCAAGCTACTATATCTTTAAAGACTTAAAATCTGTAGGATAGTGTGATGGGCTGTGAAAGTTCTAAACTTGCCTCATGTTGCTGGACTGGAGAGAGTGGCCCCATTCACGAGGCTCAGAATCCTG : ATGAAGAAAAAAATGAAGTTAGTGATTCACCTGCATTCTGCGAGTTTACATTTGAGCAGCTCAGGATAGCTACATCTGCATTTGCTGTAGAGAATATAGTTTCTGAACATGGCGAAAAAGCTCCAAATGTTGTTTATAAAGGAAAGCTAGAGAACCAGAGGCCGGTTGCTGTTAAACGCTTCAACAGATCTGCATGGCCTGATTCCCGGCAATTTTTA : GAAGAAGCAAGGGCTGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGCTGTTGTTGTGAGGGTGATGAGAGGTTGCTAGTTGCAGAATTCATGCCCAAAGAGACGCTTGCAAAACATCTTTTTCATT : GGGACACACAACCCATGAAGTGGGCCATGCGGGTAAGGGGGGCGTTGTATATTGCACAGGCTC</gDNA_template>
            <first_frame> K  G  Q  V  Y  V  G  W  K  I  M  K  E  P  R  K  L  C  F  S  V  S  T  P  K  R  D  L  Y  N  H  I  F  H  S  I  P  S  T  L  *  L  F  I  C  I  F  S  L  S  T  D  S  F  L  F  L  L  H  F  I  D  L  L  C  L  Q  L  I  *  T  K  N  H  E  F  T  P  L  S  A  G  A  V  I  W  :  K  K  F  V  F  W  N  L  *  R  G  F  S  V  H  S  A  L  I  *  Y  *  S :   Q  M  Q  I  L  K  P  H  K  V  *  F  V  G  L  C  Y  K  L  Q  A  T  I  S  L  K  T  *  N  L  *  D  S  V  M  G  C  E  S  S  K  L  A  S  C  C  W  T  G  E  S  G  P  I  H  E  A  Q  N  P   : D  E  E  K  N  E  V  S  D  S  P  A  F  C  E  F  T  F  E  Q  L  R  I  A  T  S  A  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  P  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  A  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  K  E  T  L  A  K  H  L  F  H   : W  D  T  Q  P  M  K  W  A  M  R  V  R  G  A  L  Y  I  A  Q  A  </first_frame>
            <second_frame>  K  D  K  F  M  *  G  G  K  S  *  K  S  H  E  N  C  A  L  V  L  V  L  Q  R  G  I  C  T  I  T  F  F  I  L  S  H  L  L  C  N  C  L  Y  V  Y  S  H  F  L  L  T  P  F  S  F  F  S  T  L  L  I  F  C  V  Y  S  *  F  K  Q  R  I  T  N  L  L  H  C  Q  Q  E  L  L  F  G :   K  S  L  C  F  G  I  Y  N  V  D  F  Q  F  T  Q  L  *  Y  D  I  K   : A  K  C  R  S  *  S  R  I  K  C  N  L  S  G  C  A  T  N  S  K  L  L  Y  L  *  R  L  K  I  C  R  I  V  *  W  A  V  K  V  L  N  L  P  H  V  A  G  L  E  R  V  A  P  F  T  R  L  R  I  L  :  M  K  K  K  M  K  L  V  I  H  L  H  S  A  S  L  H  L  S  S  S  G  *  L  H  L  H  L  L  *  R  I  *  F  L  N  M  A  K  K  L  Q  M  L  F  I  K  E  S  *  R  T  R  G  R  L  L  L  N  A  S  T  D  L  H  G  L  I  P  G  N  F  * :   K  K  Q  G  L  L  V  N  S  A  T  I  G  *  Q  I  F  L  A  V  V  V  R  V  M  R  G  C  *  L  Q  N  S  C  P  K  R  R  L  Q  N  I  F  F  I  :  G  T  H  N  P  *  S  G  P  C  G  *  G  G  R  C  I  L  H  R  L </second_frame>
            <third_frame>   R  T  S  L  C  R  V  E  N  H  E  R  A  T  K  I  V  L  *  C  *  Y  S  K  E  G  S  V  Q  S  H  F  S  F  Y  P  I  Y  S  V  I  V  Y  M  Y  I  L  T  F  Y  *  L  L  S  L  S  S  P  L  Y  *  S  F  V  S  T  V  N  L  N  K  E  S  R  I  Y  S  T  V  S  R  S  C  Y  L   : E  K  V  C  V  L  E  F  I  T  W  I  F  S  S  L  S  F  D  M  I  L  K  :  P  N  A  D  L  E  A  A  *  S  V  I  C  R  V  V  L  Q  T  P  S  Y  Y  I  F  K  D  L  K  S  V  G  *  C  D  G  L  *  K  F  *  T  C  L  M  L  L  D  W  R  E  W  P  H  S  R  G  S  E  S  * :   *  R  K  K  *  S  *  *  F  T  C  I  L  R  V  Y  I  *  A  A  Q  D  S  Y  I  C  I  C  C  R  E  Y  S  F  *  T  W  R  K  S  S  K  C  C  L  *  R  K  A  R  E  P  E  A  G  C  C  *  T  L  Q  Q  I  C  M  A  *  F  P  A  I  F   : R  R  S  K  G  C  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  *  G  *  *  E  V  A  S  C  R  I  H  A  Q  R  D  A  C  K  T  S  F  S  L :   G  H  T  T  H  E  V  G  H  A  G  K  G  G  V  V  Y  C  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41014" stop="40927"/>
                    <exon start="40843" stop="40626"/>
                    <exon start="40174" stop="40039"/>
                    <exon start="39287" stop="39226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVMGCESSKLASCCWTGESGPIHEAQNPDEEKNEVSDSPAFCEFTFEQLRIATSAFAVENIVSEHGEKAPNVVYKGKLENQRPVAVKRFNRSAWPDSRQFLEEARAVGQLRNNRLANLLGCCCEGDERLLVAEFMPKETLAKHLFHWDTQPMKWAMRVRGALYIAQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="35523" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="33976"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33527" e_stop="33384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35523" e_stop="35413" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="33976" e_length="205"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33975" i_stop="33876" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33528" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33527" e_stop="33384" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35523" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34405" stop="34402"/>
              <exon start="34180" stop="33976"/>
              <exon start="33875" stop="33610"/>
              <exon start="33527" stop="33384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339506" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAACTGAATTGGTACGGATTGCTTCGAGATGTCTCCAGTATGAGCCTCGTGAGCGGCCGAATCTGAAGTCATTAGTTTCTGCATTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAGGTTAGAAATCCACTATCCTCTTCTAAACCGGCATGTATATTCCTAAGCTATCTGGCTTCCCCCTTTCCGAAGGGGAACCTTGGCGTAACTG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTA</gDNA_template>
            <first_frame> G  T  E  L  V  R  I  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  L  K  S  L  V  S  A  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  V  R  N  P  L  S  S  S  K  P  A  C  I  F  L  S  Y  L  A  S  P  F  P  K  G  N  L  G  V  T   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L </first_frame>
            <second_frame>  E  L  N  W  Y  G  L  L  R  D  V  S  S  M  S  L  V  S  G  R  I  *  S  H  *  F  L  H  Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  R  L  E  I  H  Y  P  L  L  N  R  H  V  Y  S  *  A  I  W  L  P  P  F  R  R  G  T  L  A  *  L  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  L :   N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S   </second_frame>
            <third_frame>   N  *  I  G  T  D  C  F  E  M  S  P  V  *  A  S  *  A  A  E  S  E  V  I  S  F  C  I  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A  G  *  K  S  T  I  L  F  *  T  G  M  Y  I  P  K  L  S  G  F  P  L  S  E  G  E  P  W  R  N  C :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : *  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35523" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="33976"/>
                    <exon start="33875" stop="33868"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTELVRIASRCLQYEPRERPNLKSLVSALYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQVRNPLSSSKPACIFLSYLASPFPKGNLGVTVH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33978" stop="33976"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="42366" e_stop="42265"/>
            <exon e_start="35439" e_stop="35413"/>
            <exon e_start="34554" e_stop="34402"/>
            <exon e_start="34180" e_stop="34067"/>
            <exon e_start="33875" e_stop="33610"/>
            <exon e_start="33530" e_stop="33167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.352" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.949" e_score="0.963"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42366" e_stop="42265" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.352" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42264" i_stop="35440" i_length="6825"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="35439" e_stop="35413" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.949">
            <gDNA_intron_boundary i_start="35412" i_stop="34555" i_length="858"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34554" e_stop="34402" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34401" i_stop="34181" i_length="221"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34180" e_stop="34067" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34066" i_stop="33876" i_length="191"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33875" e_stop="33610" e_length="266"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33609" i_stop="33531" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.912">
            <gDNA_exon_boundary e_start="33530" e_stop="33167" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42366" stop="42265"/>
              <exon start="35439" stop="35413"/>
              <exon start="34554" stop="34402"/>
              <exon start="34180" stop="34067"/>
              <exon start="33875" stop="33610"/>
              <exon start="33530" stop="33421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33730" stop="33610"/>
              <exon start="33530" stop="33279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33718" stop="33610"/>
              <exon start="33530" stop="33167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAAGAGCCACGAAAATTGTGCTTTAGTGTTAGTACTCCAAAGAGGGATCTGTACAATCACATTTTTCATTCTATCCCATCTACTCTGTAATTGTTTATAT : TTATATCCTCTTCAAAAAGAAGCTGAG : GTTCCCTCTCTTGTATTAATGGGTATATCATCTGATGGCGAAACTATGCCTCTATCTCCACTTGGTGAAGCTTGTTTGAAAACGGATTTGACTGCTATCCATGAGATCTTAGAAGCACTTGGATACAAAGATGACGGGGGAGCAGCTACTGAG : CTTTCATTTCAGATGTGGACAGATCAGATGCTGGAAACGTTGAACTCAAAGAAAAAGGGTGATGTTGCTTTCAAAAATAAAGATTTTAGTGCTGCCATTGAATGCTATACGCAG : TTCATTGACGTTGGAACCATGGCCTCACCAACTGTGTTTGTTCGTCGTTGTCTGTCTTATCTCATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGG</gDNA_template>
            <first_frame> *  K  S  H  E  N  C  A  L  V  L  V  L  Q  R  G  I  C  T  I  T  F  F  I  L  S  H  L  L  C  N  C  L  Y  :  L  Y  P  L  Q  K  E  A  E  :  V  P  S  L  V  L  M  G  I  S  S  D  G  E  T  M  P  L  S  P  L  G  E  A  C  L  K  T  D  L  T  A  I  H  E  I  L  E  A  L  G  Y  K  D  D  G  G  A  A  T  E  :  L  S  F  Q  M  W  T  D  Q  M  L  E  T  L  N  S  K  K  K  G  D  V  A  F  K  N  K  D  F  S  A  A  I  E  C  Y  T  Q  :  F  I  D  V  G  T  M  A  S  P  T  V  F  V  R  R  C  L  S  Y  L  M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  F :   R  N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W </first_frame>
            <second_frame>  E  R  A  T  K  I  V  L  *  C  *  Y  S  K  E  G  S  V  Q  S  H  F  S  F  Y  P  I  Y  S  V  I  V  Y  I :   Y  I  L  F  K  K  K  L  R :   F  P  L  L  Y  *  W  V  Y  H  L  M  A  K  L  C  L  Y  L  H  L  V  K  L  V  *  K  R  I  *  L  L  S  M  R  S  *  K  H  L  D  T  K  M  T  G  E  Q  L  L  S :   F  H  F  R  C  G  Q  I  R  C  W  K  R  *  T  Q  R  K  R  V  M  L  L  S  K  I  K  I  L  V  L  P  L  N  A  I  R  S :   S  L  T  L  E  P  W  P  H  Q  L  C  L  F  V  V  V  C  L  I  S  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : S  E  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y   </second_frame>
            <third_frame>   K  E  P  R  K  L  C  F  S  V  S  T  P  K  R  D  L  Y  N  H  I  F  H  S  I  P  S  T  L  *  L  F  I   : F  I  S  S  S  K  R  S  *   : G  S  L  S  C  I  N  G  Y  I  I  *  W  R  N  Y  A  S  I  S  T  W  *  S  L  F  E  N  G  F  D  C  Y  P  *  D  L  R  S  T  W  I  Q  R  *  R  G  S  S  Y  *   : A  F  I  S  D  V  D  R  S  D  A  G  N  V  E  L  K  E  K  G  *  C  C  F  Q  K  *  R  F  *  C  C  H  *  M  L  Y  A   : V  H  *  R  W  N  H  G  L  T  N  C  V  C  S  S  L  S  V  L  S  H  E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  Q  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42363" stop="42265"/>
                    <exon start="35439" stop="35413"/>
                    <exon start="34554" stop="34402"/>
                    <exon start="34180" stop="34067"/>
                    <exon start="33875" stop="33630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSHENCALVLVLQRGICTITFFILSHLLCNCLYLYPLQKEAEVPSLVLMGISSDGETMPLSPLGEACLKTDLTAIHEILEALGYKDDGGAATELSFQMWTDQMLETLNSKKKGDVAFKNKDFSAAIECYTQFIDVGTMASPTVFVRRCLSYLMNDMPREALNDTVQAQVISPVWHIASYLQAASLFTLGRENEAQIALREAAILEEEKNASA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33460" stop="33188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="44502" PGL_stop="42920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44502" e_stop="42920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="44502" e_stop="42920" e_length="1583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44502" stop="43851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44183" stop="43778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44174" stop="43596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44152" stop="43647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44131" stop="43522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43553" stop="42997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43124" stop="42920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAATTCCTCTTTAGCGTTGTATGAAGAAGTCGTTAAGACAGGGGTGAAGTTGAATGAGTATACGAGTAGTGTTTTATTGAATGGACTGTGCAAGAAAGGGAAGACGGATAAGGCTGCAGAGATTTTGAAGAAGATGCTGGGAAATGGGCTTACTCCTACAGATGTGTTGTTTAATACCATTTTGAGTGGCTATTGCAAAGAGGGCAATATGGAGAAGGCTTATTTAACTATTGATGAAATGGAGATTTCTGGGGTGAAGCCGAGTTGTGTCACATTTAATACTCTGATCACGAAATTCTGTGAATTGGGTATGATGGAAGAGGCAAACAAGTGGTTAAGGAAAATGCTTGAGAAGTCAGTTTCCCCTAATGTGCAGACGTATAACATCTTAATTGACGGATATGGGCGCAAGCAGGAATTCGTGAGGTGTTTTGAGATTCTCGAGGAGATGGAAAATAACGGATTGAATCCTAATGTAATTACCTATGGTTCTCTAATCAATTCTTTGTGCAAGGATGGTAGGCTTCTTGAAGCTGATGTAGTCCTAAGTGATATGATCAGTAGAGGGGTTAAACCAAATGCGCAGGTCTATAATATGCTTATAGATGGACATTGTATGAGAGGAAGGATGACTGATGCTTTTAGATGCTTGGAGAAGATGCTACAAAGTGATGCGGAAACAACACTCGTTACATACAATACTCTATTAAATGGGCTTTGCAAAAAGGGTAAGACCAAAGAAGCTGAGGAGTTGGTCGCGGATATTCAACTCAAAGGTTTCGTTCCAGATGTTATCACATACAATTCTTTAATCTCTGCGTATTCAGATGCACGGGACAGTGAAAAGTGTTATGAAATGTATGAGAAGATGAAAACCTCTGGCATAAAACCTACAATCAACACAATTCATCCTCTAATTAGAGTGTCCAAAGAGGGAAAGAATGGACTGGTGTCAATTGACAAAATTGTTGAAGAAATGTCCCAGATGGATCTTTCTCCTGACCGAGTTGTATATAACGAGCTCGTCCATTGCTATGCTCTACACGGAGAAGTTCAAAAGTCACTTGCTATGCACCAAGAGATGGTGGAACGAGGAATTCCTTCTGACAAAAGGACATACAATAGCTTGATTATGGTGCATTTGAAAGAGGGAAGATGTCAAGAAGCCAAGAATTTTGTTGATCAGATGAAGGCTAACAGTATCGTTCCGAGTGATGAAACTTATAATATTTTGGTTGAAGGGCATTGCAAGCTTAAAGATTTTTCCGGTGCATACATTTGGTACAGAGAGATGGTTGACAATGGTTATACCCCACCAGCCAATATTTGCGAGGAGTTATTATCTGGTCTTCTAGAGGAAGGAAGATTGGAAGAGACACAGAGAAATGAGTTCTCAAGGAATTGAAGAGTGTAACACAAATGAGGATATTTCTGCTGTTGCGAAAGCATAGGATATAGAGAACTTCAGTTTAAAACTTTGGCAGCAAATGAAAAGCTTGTAATATATTCAAGAATCACTATTATTCTTGTAATATATATATATATTATTTGAATATAAACATTTAATTAATAGAATTTGAA</gDNA_template>
            <first_frame> V  N  S  S  L  A  L  Y  E  E  V  V  K  T  G  V  K  L  N  E  Y  T  S  S  V  L  L  N  G  L  C  K  K  G  K  T  D  K  A  A  E  I  L  K  K  M  L  G  N  G  L  T  P  T  D  V  L  F  N  T  I  L  S  G  Y  C  K  E  G  N  M  E  K  A  Y  L  T  I  D  E  M  E  I  S  G  V  K  P  S  C  V  T  F  N  T  L  I  T  K  F  C  E  L  G  M  M  E  E  A  N  K  W  L  R  K  M  L  E  K  S  V  S  P  N  V  Q  T  Y  N  I  L  I  D  G  Y  G  R  K  Q  E  F  V  R  C  F  E  I  L  E  E  M  E  N  N  G  L  N  P  N  V  I  T  Y  G  S  L  I  N  S  L  C  K  D  G  R  L  L  E  A  D  V  V  L  S  D  M  I  S  R  G  V  K  P  N  A  Q  V  Y  N  M  L  I  D  G  H  C  M  R  G  R  M  T  D  A  F  R  C  L  E  K  M  L  Q  S  D  A  E  T  T  L  V  T  Y  N  T  L  L  N  G  L  C  K  K  G  K  T  K  E  A  E  E  L  V  A  D  I  Q  L  K  G  F  V  P  D  V  I  T  Y  N  S  L  I  S  A  Y  S  D  A  R  D  S  E  K  C  Y  E  M  Y  E  K  M  K  T  S  G  I  K  P  T  I  N  T  I  H  P  L  I  R  V  S  K  E  G  K  N  G  L  V  S  I  D  K  I  V  E  E  M  S  Q  M  D  L  S  P  D  R  V  V  Y  N  E  L  V  H  C  Y  A  L  H  G  E  V  Q  K  S  L  A  M  H  Q  E  M  V  E  R  G  I  P  S  D  K  R  T  Y  N  S  L  I  M  V  H  L  K  E  G  R  C  Q  E  A  K  N  F  V  D  Q  M  K  A  N  S  I  V  P  S  D  E  T  Y  N  I  L  V  E  G  H  C  K  L  K  D  F  S  G  A  Y  I  W  Y  R  E  M  V  D  N  G  Y  T  P  P  A  N  I  C  E  E  L  L  S  G  L  L  E  E  G  R  L  E  E  T  Q  R  N  E  F  S  R  N  *  R  V  *  H  K  *  G  Y  F  C  C  C  E  S  I  G  Y  R  E  L  Q  F  K  T  L  A  A  N  E  K  L  V  I  Y  S  R  I  T  I  I  L  V  I  Y  I  Y  I  I  *  I  *  T  F  N  *  *  N  L   </first_frame>
            <second_frame>  L  I  P  L  *  R  C  M  K  K  S  L  R  Q  G  *  S  *  M  S  I  R  V  V  F  Y  *  M  D  C  A  R  K  G  R  R  I  R  L  Q  R  F  *  R  R  C  W  E  M  G  L  L  L  Q  M  C  C  L  I  P  F  *  V  A  I  A  K  R  A  I  W  R  R  L  I  *  L  L  M  K  W  R  F  L  G  *  S  R  V  V  S  H  L  I  L  *  S  R  N  S  V  N  W  V  *  W  K  R  Q  T  S  G  *  G  K  C  L  R  S  Q  F  P  L  M  C  R  R  I  T  S  *  L  T  D  M  G  A  S  R  N  S  *  G  V  L  R  F  S  R  R  W  K  I  T  D  *  I  L  M  *  L  P  M  V  L  *  S  I  L  C  A  R  M  V  G  F  L  K  L  M  *  S  *  V  I  *  S  V  E  G  L  N  Q  M  R  R  S  I  I  C  L  *  M  D  I  V  *  E  E  G  *  L  M  L  L  D  A  W  R  R  C  Y  K  V  M  R  K  Q  H  S  L  H  T  I  L  Y  *  M  G  F  A  K  R  V  R  P  K  K  L  R  S  W  S  R  I  F  N  S  K  V  S  F  Q  M  L  S  H  T  I  L  *  S  L  R  I  Q  M  H  G  T  V  K  S  V  M  K  C  M  R  R  *  K  P  L  A  *  N  L  Q  S  T  Q  F  I  L  *  L  E  C  P  K  R  E  R  M  D  W  C  Q  L  T  K  L  L  K  K  C  P  R  W  I  F  L  L  T  E  L  Y  I  T  S  S  S  I  A  M  L  Y  T  E  K  F  K  S  H  L  L  C  T  K  R  W  W  N  E  E  F  L  L  T  K  G  H  T  I  A  *  L  W  C  I  *  K  R  E  D  V  K  K  P  R  I  L  L  I  R  *  R  L  T  V  S  F  R  V  M  K  L  I  I  F  W  L  K  G  I  A  S  L  K  I  F  P  V  H  T  F  G  T  E  R  W  L  T  M  V  I  P  H  Q  P  I  F  A  R  S  Y  Y  L  V  F  *  R  K  E  D  W  K  R  H  R  E  M  S  S  Q  G  I  E  E  C  N  T  N  E  D  I  S  A  V  A  K  A  *  D  I  E  N  F  S  L  K  L  W  Q  Q  M  K  S  L  *  Y  I  Q  E  S  L  L  F  L  *  Y  I  Y  I  L  F  E  Y  K  H  L  I  N  R  I  *  </second_frame>
            <third_frame>   *  F  L  F  S  V  V  *  R  S  R  *  D  R  G  E  V  E  *  V  Y  E  *  C  F  I  E  W  T  V  Q  E  R  E  D  G  *  G  C  R  D  F  E  E  D  A  G  K  W  A  Y  S  Y  R  C  V  V  *  Y  H  F  E  W  L  L  Q  R  G  Q  Y  G  E  G  L  F  N  Y  *  *  N  G  D  F  W  G  E  A  E  L  C  H  I  *  Y  S  D  H  E  I  L  *  I  G  Y  D  G  R  G  K  Q  V  V  K  E  N  A  *  E  V  S  F  P  *  C  A  D  V  *  H  L  N  *  R  I  W  A  Q  A  G  I  R  E  V  F  *  D  S  R  G  D  G  K  *  R  I  E  S  *  C  N  Y  L  W  F  S  N  Q  F  F  V  Q  G  W  *  A  S  *  S  *  C  S  P  K  *  Y  D  Q  *  R  G  *  T  K  C  A  G  L  *  Y  A  Y  R  W  T  L  Y  E  R  K  D  D  *  C  F  *  M  L  G  E  D  A  T  K  *  C  G  N  N  T  R  Y  I  Q  Y  S  I  K  W  A  L  Q  K  G  *  D  Q  R  S  *  G  V  G  R  G  Y  S  T  Q  R  F  R  S  R  C  Y  H  I  Q  F  F  N  L  C  V  F  R  C  T  G  Q  *  K  V  L  *  N  V  *  E  D  E  N  L  W  H  K  T  Y  N  Q  H  N  S  S  S  N  *  S  V  Q  R  G  K  E  W  T  G  V  N  *  Q  N  C  *  R  N  V  P  D  G  S  F  S  *  P  S  C  I  *  R  A  R  P  L  L  C  S  T  R  R  S  S  K  V  T  C  Y  A  P  R  D  G  G  T  R  N  S  F  *  Q  K  D  I  Q  *  L  D  Y  G  A  F  E  R  G  K  M  S  R  S  Q  E  F  C  *  S  D  E  G  *  Q  Y  R  S  E  *  *  N  L  *  Y  F  G  *  R  A  L  Q  A  *  R  F  F  R  C  I  H  L  V  Q  R  D  G  *  Q  W  L  Y  P  T  S  Q  Y  L  R  G  V  I  I  W  S  S  R  G  R  K  I  G  R  D  T  E  K  *  V  L  K  E  L  K  S  V  T  Q  M  R  I  F  L  L  L  R  K  H  R  I  *  R  T  S  V  *  N  F  G  S  K  *  K  A  C  N  I  F  K  N  H  Y  Y  S  C  N  I  Y  I  Y  Y  L  N  I  N  I  *  L  I  E  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44502" stop="43096"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1404</number_coding_nucleotides>
                  <number_encoded_amino_acids>468</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNSSLALYEEVVKTGVKLNEYTSSVLLNGLCKKGKTDKAAEILKKMLGNGLTPTDVLFNTILSGYCKEGNMEKAYLTIDEMEISGVKPSCVTFNTLITKFCELGMMEEANKWLRKMLEKSVSPNVQTYNILIDGYGRKQEFVRCFEILEEMENNGLNPNVITYGSLINSLCKDGRLLEADVVLSDMISRGVKPNAQVYNMLIDGHCMRGRMTDAFRCLEKMLQSDAETTLVTYNTLLNGLCKKGKTKEAEELVADIQLKGFVPDVITYNSLISAYSDARDSEKCYEMYEKMKTSGIKPTINTIHPLIRVSKEGKNGLVSIDKIVEEMSQMDLSPDRVVYNELVHCYALHGEVQKSLAMHQEMVERGIPSDKRTYNSLIMVHLKEGRCQEAKNFVDQMKANSIVPSDETYNILVEGHCKLKDFSGAYIWYREMVDNGYTPPANICEELLSGLLEEGRLEETQRNEFSRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="45473" PGL_stop="45119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45473" e_stop="45119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="45473" e_stop="45119" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45473" stop="45119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATATGCTTAAGCTCCATCGTGCTTTCAAATTTGCCGGCACCGGTAATCAACATTTACTCTGCAAATTTTTCCGTTCAACTCCATTTCTACACCAAGAACAACTACTCAGTTCAATCAACAATGAAAATCCCACAGATAGTCCATCCCAAAATCTTGTAGAACAGCTCCGGCAGCTTCGGATTCTAATTCAACAACGTCGTATGGAAAATGCCAAAGGAATCTTGGGTACCCTTATTCATACAAGTTCAGTTTCTCAACTCTACTCTCTCTTTTCACCTTCCCCTGCAAAACCCCTTCTCTCAGATTTGCTATTTTCACTGTATTTAGAGTCGAAACTCATTAACCAAGCTGA</gDNA_template>
            <first_frame> S  I  C  L  S  S  I  V  L  S  N  L  P  A  P  V  I  N  I  Y  S  A  N  F  S  V  Q  L  H  F  Y  T  K  N  N  Y  S  V  Q  S  T  M  K  I  P  Q  I  V  H  P  K  I  L  *  N  S  S  G  S  F  G  F  *  F  N  N  V  V  W  K  M  P  K  E  S  W  V  P  L  F  I  Q  V  Q  F  L  N  S  T  L  S  F  H  L  P  L  Q  N  P  F  S  Q  I  C  Y  F  H  C  I  *  S  R  N  S  L  T  K  L  </first_frame>
            <second_frame>  Q  Y  A  *  A  P  S  C  F  Q  I  C  R  H  R  *  S  T  F  T  L  Q  I  F  P  F  N  S  I  S  T  P  R  T  T  T  Q  F  N  Q  Q  *  K  S  H  R  *  S  I  P  K  S  C  R  T  A  P  A  A  S  D  S  N  S  T  T  S  Y  G  K  C  Q  R  N  L  G  Y  P  Y  S  Y  K  F  S  F  S  T  L  L  S  L  F  T  F  P  C  K  T  P  S  L  R  F  A  I  F  T  V  F  R  V  E  T  H  *  P  S  * </second_frame>
            <third_frame>   N  M  L  K  L  H  R  A  F  K  F  A  G  T  G  N  Q  H  L  L  C  K  F  F  R  S  T  P  F  L  H  Q  E  Q  L  L  S  S  I  N  N  E  N  P  T  D  S  P  S  Q  N  L  V  E  Q  L  R  Q  L  R  I  L  I  Q  Q  R  R  M  E  N  A  K  G  I  L  G  T  L  I  H  T  S  S  V  S  Q  L  Y  S  L  F  S  P  S  P  A  K  P  L  L  S  D  L  L  F  S  L  Y  L  E  S  K  L  I  N  Q  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45471" stop="45121"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMLKLHRAFKFAGTGNQHLLCKFFRSTPFLHQEQLLSSINNENPTDSPSQNLVEQLRQLRILIQQRRMENAKGILGTLIHTSSVSQLYSLFSPSPAKPLLSDLLFSLYLESKLINQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="48405" PGL_stop="51655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48405" e_stop="48626"/>
            <exon e_start="49594" e_stop="49763"/>
            <exon e_start="50772" e_stop="50876"/>
            <exon e_start="51119" e_stop="51196"/>
            <exon e_start="51537" e_stop="51655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.852" e_score="0.901"/>
          <exon-intron don_prob="0.999" acc_prob="0.936" e_score="0.988"/>
          <exon-intron don_prob="0.916" acc_prob="0.998" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="0.987"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="48405" e_stop="48626" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.852">
            <gDNA_intron_boundary i_start="48627" i_stop="49593" i_length="967"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="49594" e_stop="49763" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.936">
            <gDNA_intron_boundary i_start="49764" i_stop="50771" i_length="1008"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="50772" e_stop="50876" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.916" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50877" i_stop="51118" i_length="242"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="51119" e_stop="51196" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="51197" i_stop="51536" i_length="340"/>
          </intron>
          <exon e_serial="5" e_score="0.975">
            <gDNA_exon_boundary e_start="51537" e_stop="51655" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48405" stop="48626"/>
              <exon start="49594" stop="49763"/>
              <exon start="50772" stop="50876"/>
              <exon start="51119" stop="51196"/>
              <exon start="51537" stop="51655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGCCCCAAATACCAACTGCCCTTCCTCTTCACGGCATACTTCCCACAAAAATACTTGCTGTGCTGAGTTCTGCGTGCTGATTGGTCAGCCCTTCTTGGTCATCTTAGCCCCATAAGGAAGCAAAGAGGGTTGAAGAAGACTACCAAGCAGCGGCAGCAAACCCTGTCTTTCAAGAATAAGGGATTACTTCTATTGTTGGAGATTCATCCCCTAATAG : GAATGACATTAAAGGGCAGTTTAGTTCAAAAGATAGGTAATGCAATTATGGAAGTCGCAAGGAACAAAGGCTCAACATGGTGGTACACACCTCACATGGCTGCAGCATCTCGTGCCATAACCGAACGGGTCCCATTGGTTGATATTCTCCTTGAAGTCAGAGATGCTCGG : ATTCCTTTATCATCAGCATGTGAGCTAATTAAGCATCATTCGCCTTCCTCGAGGCGCATTATAATTCTGAACAAGACAGATTTAGCAAATCAAATTCAATTAAAG : GAATGGCTGAAATACTTTGAGGAACAAAAGTCTCTTGTTTTTGGAGTCAATTCCCATAATAAGGATAACATCAAAGAG : ACTTGCAGTTACTGAACTTTCTGCGAGCCAGAGTTCGAGAATTATCAAAGATTGGTCATGGGGATCAGACAATCACATTAATGCTTGTTGGCATTCCTAATGTTGGGAAGTCTGCCCTT</gDNA_template>
            <first_frame> F  A  A  P  N  T  N  C  P  S  S  S  R  H  T  S  H  K  N  T  C  C  A  E  F  C  V  L  I  G  Q  P  F  L  V  I  L  A  P  *  G  S  K  E  G  *  R  R  L  P  S  S  G  S  K  P  C  L  S  R  I  R  D  Y  F  Y  C  W  R  F  I  P  *  *  :  E  *  H  *  R  A  V  *  F  K  R  *  V  M  Q  L  W  K  S  Q  G  T  K  A  Q  H  G  G  T  H  L  T  W  L  Q  H  L  V  P  *  P  N  G  S  H  W  L  I  F  S  L  K  S  E  M  L  G :   F  L  Y  H  Q  H  V  S  *  L  S  I  I  R  L  P  R  G  A  L  *  F  *  T  R  Q  I  *  Q  I  K  F  N  *  R :   N  G  *  N  T  L  R  N  K  S  L  L  F  L  E  S  I  P  I  I  R  I  T  S  K  R :   L  A  V  T  E  L  S  A  S  Q  S  S  R  I  I  K  D  W  S  W  G  S  D  N  H  I  N  A  C  W  H  S  *  C  W  E  V  C  P  </first_frame>
            <second_frame>  L  Q  P  Q  I  P  T  A  L  P  L  H  G  I  L  P  T  K  I  L  A  V  L  S  S  A  C  *  L  V  S  P  S  W  S  S  *  P  H  K  E  A  K  R  V  E  E  D  Y  Q  A  A  A  A  N  P  V  F  Q  E  *  G  I  T  S  I  V  G  D  S  S  P  N  R :   N  D  I  K  G  Q  F  S  S  K  D  R  *  C  N  Y  G  S  R  K  E  Q  R  L  N  M  V  V  H  T  S  H  G  C  S  I  S  C  H  N  R  T  G  P  I  G  *  Y  S  P  *  S  Q  R  C  S   : D  S  F  I  I  S  M  *  A  N  *  A  S  F  A  F  L  E  A  H  Y  N  S  E  Q  D  R  F  S  K  S  N  S  I  K   : G  M  A  E  I  L  *  G  T  K  V  S  C  F  W  S  Q  F  P  *  *  G  *  H  Q  R   : D  L  Q  L  L  N  F  L  R  A  R  V  R  E  L  S  K  I  G  H  G  D  Q  T  I  T  L  M  L  V  G  I  P  N  V  G  K  S  A  L </second_frame>
            <third_frame>   C  S  P  K  Y  Q  L  P  F  L  F  T  A  Y  F  P  Q  K  Y  L  L  C  *  V  L  R  A  D  W  S  A  L  L  G  H  L  S  P  I  R  K  Q  R  G  L  K  K  T  T  K  Q  R  Q  Q  T  L  S  F  K  N  K  G  L  L  L  L  L  E  I  H  P  L  I   : G  M  T  L  K  G  S  L  V  Q  K  I  G  N  A  I  M  E  V  A  R  N  K  G  S  T  W  W  Y  T  P  H  M  A  A  A  S  R  A  I  T  E  R  V  P  L  V  D  I  L  L  E  V  R  D  A  R  :  I  P  L  S  S  A  C  E  L  I  K  H  H  S  P  S  S  R  R  I  I  I  L  N  K  T  D  L  A  N  Q  I  Q  L  K  :  E  W  L  K  Y  F  E  E  Q  K  S  L  V  F  G  V  N  S  H  N  K  D  N  I  K  E  :  T  C  S  Y  *  T  F  C  E  P  E  F  E  N  Y  Q  R  L  V  M  G  I  R  Q  S  H  *  C  L  L  A  F  L  M  L  G  S  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48476" stop="48626"/>
                    <exon start="49594" stop="49763"/>
                    <exon start="50772" stop="50876"/>
                    <exon start="51119" stop="51196"/>
                    <exon start="51537" stop="51551"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRADWSALLGHLSPIRKQRGLKKTTKQRQQTLSFKNKGLLLLLEIHPLIGMTLKGSLVQKIGNAIMEVARNKGSTWWYTPHMAAASRAITERVPLVDILLEVRDARIPLSSACELIKHHSPSSRRIIILNKTDLANQIQLKEWLKYFEEQKSLVFGVNSHNKDNIKETCSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="60600" PGL_stop="57871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60600" e_stop="60163"/>
            <exon e_start="60024" e_stop="59926"/>
            <exon e_start="59663" e_stop="59556"/>
            <exon e_start="59038" e_stop="58696"/>
            <exon e_start="57900" e_stop="57871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.991"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60600" e_stop="60163" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.968">
            <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60024" e_stop="59926" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59663" e_stop="59556" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="59038" e_stop="58696" e_length="343"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="58695" i_stop="57901" i_length="795"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="57900" e_stop="57871" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60600" stop="60333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60444" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60444" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60364" stop="60163"/>
              <exon start="60024" stop="59929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60191" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58696"/>
              <exon start="57900" stop="57871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATGATGTTAACCCAGACGAAGAGGATGCCAATTGCGAAAAAGATGGAGATGATGCTTCTGACAATGAGTCTGGTGATGATGAATGTGATAGTGACGAAGATAACAAATTGCAAGCTACTGAAGAATTTTCAGAAGATGATGATGCAATTGATAGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAG : GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG : GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG : ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATAT : TTACACGAGTACATGGAACATGAGCAGATA</gDNA_template>
            <first_frame> D  D  D  V  N  P  D  E  E  D  A  N  C  E  K  D  G  D  D  A  S  D  N  E  S  G  D  D  E  C  D  S  D  E  D  N  K  L  Q  A  T  E  E  F  S  E  D  D  D  A  I  D  S  A  S  A  T  E  D  D  E  S  D  G  E  E  E  G  I  D  G  D  I  M  Q  D  N  N  S  W  A  S  E  E  D  D  V  D  E  K  V  S  K  G  T  K  R  K  I  S  D  I  D  V  N  A  A  S  N  S  L  R  A  L  K  K  L  A  G  A  N  M  E  P  N  S  L  N  M  E  D  G  I  L  S  N  E  D  F  K  R  I  K  E  L  K  :  A  K  N  D  A  R  T  V  L  A  Q  H  G  F  K  L  P  S  S  D  Q  I  S  T  K  R  V  D  A  A  K  L  E  :  A  N  I  R  K  K  L  S  K  E  E  R  L  A  I  I  R  A  G  R  E  D  R  G  R  Y  Q  A  K  T  A  L  K  K  K  K  :  T  G  G  S  S  N  Q  Q  K  E  H  Q  K  H  M  P  L  A  A  K  R  S  K  V  A  K  S  K  I  E  K  K  R  K  Q  A  R  A  G  K  Q  F  R  G  R  K  A  W  K  *  S  E  D  *  L  S  S  S  Q  F  C  Q  K  *  K  S  E  K  *  K  M  C  I  F  S  L  H  I  G  T  C  N  F  D  Y  V  F  L  S  *  F  I  V  E  Q  *  C  Q  E  S  K  F  *  F  E  K  A  E  R  F  F  L  F  I   : F  T  R  V  H  G  T  *  A  D  </first_frame>
            <second_frame>  M  M  M  L  T  Q  T  K  R  M  P  I  A  K  K  M  E  M  M  L  L  T  M  S  L  V  M  M  N  V  I  V  T  K  I  T  N  C  K  L  L  K  N  F  Q  K  M  M  M  Q  L  I  V  H  Q  L  L  K  M  M  R  V  M  V  K  K  R  V  L  M  A  I  *  C  R  I  I  I  A  G  L  L  K  R  M  M  W  M  K  R  S  L  K  E  Q  K  G  K  Y  L  I  L  M  *  M  L  L  V  I  A  F  V  L  *  R  N  *  Q  G  Q  T  W  N  L  T  P  *  I  W  R  M  V  F  Y  L  M  R  T  S  K  E  S  K  N  S  R :   R  K  T  T  R  E  L  F  *  H  N  M  D  L  S  F  P  A  Q  T  K  L  V  Q  K  E  L  M  L  L  N  L  R :   R  T  S  E  R  S  L  A  R  K  R  D  W  R  L  F  G  L  V  E  R  I  E  G  D  T  K  L  K  L  L  *  K  R  R  R :   R  V  V  Q  A  I  S  R  K  N  T  K  N  I  C  H  *  Q  Q  R  D  P  R  L  Q  N  L  R  L  R  K  R  E  S  R  R  V  L  A  N  N  F  E  G  E  K  L  G  S  R  V  K  T  S  F  H  L  P  N  F  A  K  S  K  N  Q  R  N  R  K  C  V  F  F  P  F  I  L  E  H  A  I  L  I  M  F  F  C  P  N  L  L  *  N  N  N  V  K  R  V  N  F  N  S  K  K  Q  S  D  S  F  S  S  Y  :  L  H  E  Y  M  E  H  E  Q  I </second_frame>
            <third_frame>   *  *  C  *  P  R  R  R  G  C  Q  L  R  K  R  W  R  *  C  F  *  Q  *  V  W  *  *  *  M  *  *  *  R  R  *  Q  I  A  S  Y  *  R  I  F  R  R  *  *  C  N  *  *  C  I  S  Y  *  R  *  *  E  *  W  *  R  R  G  Y  *  W  R  Y  N  A  G  *  *  *  L  G  F  *  R  G  *  C  G  *  K  G  L  *  R  N  K  K  E  N  I  *  Y  *  C  K  C  C  *  *  *  P  S  C  F  K  E  I  S  R  G  K  H  G  T  *  L  P  E  Y  G  G  W  Y  F  I  *  *  G  L  Q  K  N  Q  R  T  Q   : G  E  K  R  R  E  N  C  F  S  T  T  W  I  *  A  S  Q  L  R  P  N  *  Y  K  K  S  *  C  C  *  T  *   : G  E  H  P  K  E  A  *  Q  G  R  E  T  G  D  Y  S  G  W  *  R  G  *  R  E  I  P  S  *  N  C  S  E  K  E  E   : D  G  W  F  K  Q  S  A  E  R  T  P  K  T  Y  A  I  S  S  K  E  I  Q  G  C  K  I  *  D  *  E  K  E  K  A  G  A  C  W  Q  T  I  S  R  E  K  S  L  E  V  E  *  R  L  A  F  I  F  P  I  L  P  K  V  K  I  R  E  I  E  N  V  Y  F  F  P  S  Y  W  N  M  Q  F  *  L  C  F  F  V  L  I  Y  C  R  T  I  M  S  R  E  *  I  L  I  R  K  S  R  A  I  L  S  L  H  I :   Y  T  S  T  W  N  M  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60600" stop="60163"/>
                    <exon start="60024" stop="59926"/>
                    <exon start="59663" stop="59556"/>
                    <exon start="59038" stop="58889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDDVNPDEEDANCEKDGDDASDNESGDDECDSDEDNKLQATEEFSEDDDAIDSASATEDDESDGEEEGIDGDIMQDNNSWASEEDDVDEKVSKGTKRKISDIDVNAASNSLRALKKLAGANMEPNSLNMEDGILSNEDFKRIKELKAKNDARTVLAQHGFKLPSSDQISTKRVDAAKLEANIRKKLSKEERLAIIRAGREDRGRYQAKTALKKKKTGGSSNQQKEHQKHMPLAAKRSKVAKSKIEKKRKQARAGKQFRGRKAWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60600" e_stop="60163"/>
            <exon e_start="60024" e_stop="59926"/>
            <exon e_start="59663" e_stop="59556"/>
            <exon e_start="59038" e_stop="58691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60600" e_stop="60163" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.968">
            <gDNA_intron_boundary i_start="60162" i_stop="60025" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60024" e_stop="59926" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="59925" i_stop="59664" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59663" e_stop="59556" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="59038" e_stop="58691" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60600" stop="60333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60444" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60444" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60364" stop="60163"/>
              <exon start="60024" stop="59929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60191" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60190" stop="60163"/>
              <exon start="60024" stop="59926"/>
              <exon start="59663" stop="59556"/>
              <exon start="59038" stop="58801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATGATGTTAACCCAGACGAAGAGGATGCCAATTGCGAAAAAGATGGAGATGATGCTTCTGACAATGAGTCTGGTGATGATGAATGTGATAGTGACGAAGATAACAAATTGCAAGCTACTGAAGAATTTTCAGAAGATGATGATGCAATTGATAGTGCATCAGCTACTGAAGATGATGAGAGTGATGGTGAAGAAGAGGGTATTGATGGCGATATAATGCAGGATAATAATAGCTGGGCTTCTGAAGAGGATGATGTGGATGAAAAGGTCTCTAAAGGAACAAAAAGGAAAATATCTGATATTGATGTAAATGCTGCTAGTAATAGCCTTCGTGCTTTAAAGAAATTAGCAGGGGCAAACATGGAACCTAACTCCCTGAATATGGAGGATGGTATTTTATCTAATGAGGACTTCAAAAGAATCAAAGAACTCAAG : GCGAAAAACGACGCGAGAACTGTTTTAGCACAACATGGATTTAAGCTTCCCAGCTCAGACCAAATTAGTACAAAAAGAGTTGATGCTGCTAAACTTGAG : GCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG : ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATATGCATT</gDNA_template>
            <first_frame> D  D  D  V  N  P  D  E  E  D  A  N  C  E  K  D  G  D  D  A  S  D  N  E  S  G  D  D  E  C  D  S  D  E  D  N  K  L  Q  A  T  E  E  F  S  E  D  D  D  A  I  D  S  A  S  A  T  E  D  D  E  S  D  G  E  E  E  G  I  D  G  D  I  M  Q  D  N  N  S  W  A  S  E  E  D  D  V  D  E  K  V  S  K  G  T  K  R  K  I  S  D  I  D  V  N  A  A  S  N  S  L  R  A  L  K  K  L  A  G  A  N  M  E  P  N  S  L  N  M  E  D  G  I  L  S  N  E  D  F  K  R  I  K  E  L  K  :  A  K  N  D  A  R  T  V  L  A  Q  H  G  F  K  L  P  S  S  D  Q  I  S  T  K  R  V  D  A  A  K  L  E  :  A  N  I  R  K  K  L  S  K  E  E  R  L  A  I  I  R  A  G  R  E  D  R  G  R  Y  Q  A  K  T  A  L  K  K  K  K  :  T  G  G  S  S  N  Q  Q  K  E  H  Q  K  H  M  P  L  A  A  K  R  S  K  V  A  K  S  K  I  E  K  K  R  K  Q  A  R  A  G  K  Q  F  R  G  R  K  A  W  K  *  S  E  D  *  L  S  S  S  Q  F  C  Q  K  *  K  S  E  K  *  K  M  C  I  F  S  L  H  I  G  T  C  N  F  D  Y  V  F  L  S  *  F  I  V  E  Q  *  C  Q  E  S  K  F  *  F  E  K  A  E  R  F  F  L  F  I  C  I </first_frame>
            <second_frame>  M  M  M  L  T  Q  T  K  R  M  P  I  A  K  K  M  E  M  M  L  L  T  M  S  L  V  M  M  N  V  I  V  T  K  I  T  N  C  K  L  L  K  N  F  Q  K  M  M  M  Q  L  I  V  H  Q  L  L  K  M  M  R  V  M  V  K  K  R  V  L  M  A  I  *  C  R  I  I  I  A  G  L  L  K  R  M  M  W  M  K  R  S  L  K  E  Q  K  G  K  Y  L  I  L  M  *  M  L  L  V  I  A  F  V  L  *  R  N  *  Q  G  Q  T  W  N  L  T  P  *  I  W  R  M  V  F  Y  L  M  R  T  S  K  E  S  K  N  S  R :   R  K  T  T  R  E  L  F  *  H  N  M  D  L  S  F  P  A  Q  T  K  L  V  Q  K  E  L  M  L  L  N  L  R :   R  T  S  E  R  S  L  A  R  K  R  D  W  R  L  F  G  L  V  E  R  I  E  G  D  T  K  L  K  L  L  *  K  R  R  R :   R  V  V  Q  A  I  S  R  K  N  T  K  N  I  C  H  *  Q  Q  R  D  P  R  L  Q  N  L  R  L  R  K  R  E  S  R  R  V  L  A  N  N  F  E  G  E  K  L  G  S  R  V  K  T  S  F  H  L  P  N  F  A  K  S  K  N  Q  R  N  R  K  C  V  F  F  P  F  I  L  E  H  A  I  L  I  M  F  F  C  P  N  L  L  *  N  N  N  V  K  R  V  N  F  N  S  K  K  Q  S  D  S  F  S  S  Y  A   </second_frame>
            <third_frame>   *  *  C  *  P  R  R  R  G  C  Q  L  R  K  R  W  R  *  C  F  *  Q  *  V  W  *  *  *  M  *  *  *  R  R  *  Q  I  A  S  Y  *  R  I  F  R  R  *  *  C  N  *  *  C  I  S  Y  *  R  *  *  E  *  W  *  R  R  G  Y  *  W  R  Y  N  A  G  *  *  *  L  G  F  *  R  G  *  C  G  *  K  G  L  *  R  N  K  K  E  N  I  *  Y  *  C  K  C  C  *  *  *  P  S  C  F  K  E  I  S  R  G  K  H  G  T  *  L  P  E  Y  G  G  W  Y  F  I  *  *  G  L  Q  K  N  Q  R  T  Q   : G  E  K  R  R  E  N  C  F  S  T  T  W  I  *  A  S  Q  L  R  P  N  *  Y  K  K  S  *  C  C  *  T  *   : G  E  H  P  K  E  A  *  Q  G  R  E  T  G  D  Y  S  G  W  *  R  G  *  R  E  I  P  S  *  N  C  S  E  K  E  E   : D  G  W  F  K  Q  S  A  E  R  T  P  K  T  Y  A  I  S  S  K  E  I  Q  G  C  K  I  *  D  *  E  K  E  K  A  G  A  C  W  Q  T  I  S  R  E  K  S  L  E  V  E  *  R  L  A  F  I  F  P  I  L  P  K  V  K  I  R  E  I  E  N  V  Y  F  F  P  S  Y  W  N  M  Q  F  *  L  C  F  F  V  L  I  Y  C  R  T  I  M  S  R  E  *  I  L  I  R  K  S  R  A  I  L  S  L  H  M  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60600" stop="60163"/>
                    <exon start="60024" stop="59926"/>
                    <exon start="59663" stop="59556"/>
                    <exon start="59038" stop="58889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDDVNPDEEDANCEKDGDDASDNESGDDECDSDEDNKLQATEEFSEDDDAIDSASATEDDESDGEEEGIDGDIMQDNNSWASEEDDVDEKVSKGTKRKISDIDVNAASNSLRALKKLAGANMEPNSLNMEDGILSNEDFKRIKELKAKNDARTVLAQHGFKLPSSDQISTKRVDAAKLEANIRKKLSKEERLAIIRAGREDRGRYQAKTALKKKKTGGSSNQQKEHQKHMPLAAKRSKVAKSKIEKKRKQARAGKQFRGRKAWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="59688" e_stop="59556"/>
            <exon e_start="59038" e_stop="58691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.970"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="59688" e_stop="59556" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59555" i_stop="59039" i_length="517"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="59038" e_stop="58691" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59688" stop="59556"/>
              <exon start="59038" stop="58691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGTTATTATTTCTACTCTTTAGGCGAACATCCGAAAGAAGCTTAGCAAGGAAGAGAGACTGGCGATTATTCGGGCTGGTAGAGAGGATAGAGGGAGATACCAAGCTAAAACTGCTCTGAAAAAGAAGAAG : ACGGGTGGTTCAAGCAATCAGCAGAAAGAACACCAAAAACATATGCCATTAGCAGCAAAGAGATCCAAGGTTGCAAAATCTAAGATTGAGAAAAAGAGAAAGCAGGCGCGTGCTGGCAAACAATTTCGAGGGAGAAAAGCTTGGAAGTAGAGTGAAGACTAGCTTTCATCTTCCCAATTTTGCCAAAAGTAAAAATCAGAGAAATAGAAAATGTGTATTTTTTCCCTTCATATTGGAACATGCAATTTTGATTATGTTTTTTTGTCCTAATTTATTGTAGAACAATAATGTCAAGAGAGTAAATTTTAATTCGAAAAAGCAGAGCGATTCTTTCTCTTCATATGCATT</gDNA_template>
            <first_frame> L  C  Y  Y  F  Y  S  L  G  E  H  P  K  E  A  *  Q  G  R  E  T  G  D  Y  S  G  W  *  R  G  *  R  E  I  P  S  *  N  C  S  E  K  E  E   : D  G  W  F  K  Q  S  A  E  R  T  P  K  T  Y  A  I  S  S  K  E  I  Q  G  C  K  I  *  D  *  E  K  E  K  A  G  A  C  W  Q  T  I  S  R  E  K  S  L  E  V  E  *  R  L  A  F  I  F  P  I  L  P  K  V  K  I  R  E  I  E  N  V  Y  F  F  P  S  Y  W  N  M  Q  F  *  L  C  F  F  V  L  I  Y  C  R  T  I  M  S  R  E  *  I  L  I  R  K  S  R  A  I  L  S  L  H  M  H  </first_frame>
            <second_frame>  Y  V  I  I  S  T  L  *  A  N  I  R  K  K  L  S  K  E  E  R  L  A  I  I  R  A  G  R  E  D  R  G  R  Y  Q  A  K  T  A  L  K  K  K  K  :  T  G  G  S  S  N  Q  Q  K  E  H  Q  K  H  M  P  L  A  A  K  R  S  K  V  A  K  S  K  I  E  K  K  R  K  Q  A  R  A  G  K  Q  F  R  G  R  K  A  W  K  *  S  E  D  *  L  S  S  S  Q  F  C  Q  K  *  K  S  E  K  *  K  M  C  I  F  S  L  H  I  G  T  C  N  F  D  Y  V  F  L  S  *  F  I  V  E  Q  *  C  Q  E  S  K  F  *  F  E  K  A  E  R  F  F  L  F  I  C  I </second_frame>
            <third_frame>   M  L  L  F  L  L  F  R  R  T  S  E  R  S  L  A  R  K  R  D  W  R  L  F  G  L  V  E  R  I  E  G  D  T  K  L  K  L  L  *  K  R  R  R :   R  V  V  Q  A  I  S  R  K  N  T  K  N  I  C  H  *  Q  Q  R  D  P  R  L  Q  N  L  R  L  R  K  R  E  S  R  R  V  L  A  N  N  F  E  G  E  K  L  G  S  R  V  K  T  S  F  H  L  P  N  F  A  K  S  K  N  Q  R  N  R  K  C  V  F  F  P  F  I  L  E  H  A  I  L  I  M  F  F  C  P  N  L  L  *  N  N  N  V  K  R  V  N  F  N  S  K  K  Q  S  D  S  F  S  S  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59663" stop="59556"/>
                    <exon start="59038" stop="58889"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANIRKKLSKEERLAIIRAGREDRGRYQAKTALKKKKTGGSSNQQKEHQKHMPLAAKRSKVAKSKIEKKRKQARAGKQFRGRKAWK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58986" stop="58759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRDPRLQNLRLRKRESRRVLANNFEGEKLGSRVKTSFHLPNFAKSKNQRNRKCVFFPFILEHAILIMFFCPNLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="67484" PGL_stop="71403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67484" e_stop="69338"/>
            <exon e_start="71379" e_stop="71403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.969" e_score="0.997"/>
          <exon-only e_score="0.520"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="67484" e_stop="69338" e_length="1855"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.969">
            <gDNA_intron_boundary i_start="69339" i_stop="71378" i_length="2040"/>
          </intron>
          <exon e_serial="2" e_score="0.520">
            <gDNA_exon_boundary e_start="71379" e_stop="71403" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67484" stop="67821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67673" stop="68291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67673" stop="68237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67966" stop="68683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67978" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68181" stop="68858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68373" stop="68909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68631" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68787" stop="69338"/>
              <exon start="71379" stop="71403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68860" stop="69338"/>
              <exon start="71379" stop="71403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69050" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGTTTATTAGGAAATTCTCTGCCTTGATTCAAGATTCCTTTTTTTACCTCTCTGTAGGAGCTCCCACCATTTTATTTCCCTTGACTCGAACTCACAACCTTAGGGTCGAGGTGAGGGGTGTTTACGATCCGAACAAGTCCCTCTTGTTTTTTTTCTTCCAATTGAACCCCTTTGAGGTATGTGAGTTTTTTTTTGTTGGGAAAACCGATAACTACTTGTTGTGATTCAGTATTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAGTATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTTCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAA : AGAAAAAGACCAACGAATTATACAA</gDNA_template>
            <first_frame> I  W  F  I  R  K  F  S  A  L  I  Q  D  S  F  F  Y  L  S  V  G  A  P  T  I  L  F  P  L  T  R  T  H  N  L  R  V  E  V  R  G  V  Y  D  P  N  K  S  L  L  F  F  F  F  Q  L  N  P  F  E  V  C  E  F  F  F  V  G  K  T  D  N  Y  L  L  *  F  S  I  V  T  M  L  Q  D  D  G  S  S  S  V  T  S  S  S  P  I  Q  V  F  P  M  M  S  V  S  P  S  F  G  S  S  N  Q  W  L  K  E  L  K  S  E  E  R  G  L  Y  L  I  H  L  L  L  A  C  A  N  H  V  A  S  G  S  L  E  N  A  N  I  A  L  D  H  I  S  Q  L  A  S  P  S  G  D  T  M  Q  R  I  A  S  Y  F  T  E  A  L  A  D  R  I  L  R  S  W  P  G  L  Y  K  A  L  R  S  T  K  L  S  V  V  S  E  E  I  L  V  R  K  M  F  F  E  I  F  P  F  L  K  V  A  F  V  V  T  N  Q  A  I  I  E  A  M  E  G  E  K  M  V  H  I  V  D  L  N  A  A  E  P  L  Q  W  R  A  L  L  Q  D  L  S  A  R  P  E  G  P  P  H  L  R  I  T  G  V  H  Q  Q  K  E  V  L  D  Q  M  A  H  V  L  T  Q  E  A  E  K  L  D  I  P  F  Q  F  N  Q  V  V  S  R  L  E  N  L  D  V  E  K  L  R  V  K  T  G  E  A  L  A  I  S  S  I  M  Q  L  H  T  L  L  A  H  D  N  D  K  K  S  P  L  P  F  K  H  S  N  G  V  N  L  N  R  A  L  V  N  Q  N  T  L  G  E  F  L  E  K  D  M  A  N  G  C  S  P  S  N  D  T  A  S  S  S  P  L  C  S  T  G  S  T  K  M  D  S  F  L  N  A  L  W  G  L  S  P  K  V  M  V  V  T  E  Q  D  A  N  H  N  G  T  T  L  M  E  R  L  S  E  S  L  H  F  Y  A  A  L  F  D  C  L  E  S  T  L  P  R  T  S  L  E  R  L  K  V  E  K  M  L  L  G  E  E  I  R  N  I  I  A  C  E  G  I  E  R  K  E  R  H  E  K  L  E  K  W  F  Q  R  F  D  T  S  G  F  G  N  V  P  L  S  Y  Y  A  M  L  Q  A  R  R  L  L  Q  S  Y  S  C  E  G  Y  K  I  K  E  D  N  G  C  V  V  I  C  W  Q  D  R  P  L  F  S  V  S  S  W  R  C  R  K  *  D  *  T  *  F  S  L  *  C  F  R  F  V  S  S  F  C  C  C  N  I  M  C  R  T  P  V  G  E  T  A  I  D  M  F  E  T  F  C  Q  L  F  *  S  H  V  I  S  F  S  L  V  F  R  F  P  F  *  Y  G  S  I  K  L  M  F  S  *   : K  K  K  T  N  E  L  Y   </first_frame>
            <second_frame>  Y  G  L  L  G  N  S  L  P  *  F  K  I  P  F  F  T  S  L  *  E  L  P  P  F  Y  F  P  *  L  E  L  T  T  L  G  S  R  *  G  V  F  T  I  R  T  S  P  S  C  F  F  S  S  N  *  T  P  L  R  Y  V  S  F  F  L  L  G  K  P  I  T  T  C  C  D  S  V  L  *  Q  C  Y  K  M  M  V  L  H  L  *  P  H  H  H  L  F  K  Y  F  Q  *  C  L  Y  H  L  A  L  V  H  Q  I  S  G  L  R  S  *  N  L  K  K  E  G  C  I  *  Y  I  F  C  L  L  V  L  I  M  L  L  L  V  A  L  R  M  L  I  *  H  L  T  I  F  P  N  L  H  L  L  V  E  I  P  C  K  G  L  L  H  I  L  L  R  L  *  L  I  G  F  *  G  V  G  L  V  F  I  R  R  C  V  R  L  S  Y  R  L  S  Q  K  K  F  L  L  G  R  C  F  S  R  S  F  L  S  *  R  W  R  L  W  S  Q  I  K  L  *  L  K  L  W  K  V  K  R  W  F  I  L  W  I  L  M  L  L  N  P  C  N  G  V  R  C  F  R  T  *  A  R  V  L  K  D  R  P  I  C  A  L  L  G  F  I  S  K  K  R  C  *  I  K  W  H  M  C  L  L  K  K  Q  K  N  W  I  S  L  F  S  S  I  K  *  L  A  D  W  K  I  L  M  L  R  N  F  A  *  K  R  G  R  L  L  R  L  V  Q  L  C  N  C  T  P  F  *  P  M  I  M  T  R  S  P  L  C  L  L  S  I  Q  M  V  L  T  *  T  G  H  *  S  T  K  I  L  *  G  N  F  L  K  K  I  W  L  M  V  A  V  Q  A  M  T  P  L  L  H  P  R  Y  V  Q  L  V  Q  Q  R  W  I  V  S  S  M  L  C  G  V  Y  H  Q  K  L  W  W  *  Q  N  K  M  L  T  I  M  G  Q  L  L  W  R  G  Y  Q  S  R  Y  I  F  M  L  H  Y  L  I  V  L  N  R  R  C  Q  E  H  H  *  R  D  *  R  W  K  R  C  Y  *  V  K  R  L  E  T  L  *  H  V  K  G  S  N  E  R  R  G  M  K  S  S  K  S  G  S  K  D  S  T  H  L  V  L  G  M  C  L  *  V  I  M  L  C  C  R  Q  E  G  C  C  R  V  T  V  V  K  D  T  R  S  K  K  I  M  V  A  W  *  Y  A  G  R  I  A  H  F  S  Q  C  R  L  G  D  V  G  S  E  T  K  L  S  F  H  C  N  V  L  D  L  Y  L  P  F  V  V  V  T  *  C  V  E  L  Q  L  V  K  L  L  L  T  C  L  R  H  F  V  N  F  F  D  L  M  *  *  A  S  L  *  C  L  D  F  H  F  D  M  D  Q  *  S  *  C  S  L  K  :  R  K  R  P  T  N  Y  T  </second_frame>
            <third_frame>   M  V  Y  *  E  I  L  C  L  D  S  R  F  L  F  L  P  L  C  R  S  S  H  H  F  I  S  L  D  S  N  S  Q  P  *  G  R  G  E  G  C  L  R  S  E  Q  V  P  L  V  F  F  L  P  I  E  P  L  *  G  M  *  V  F  F  C  W  E  N  R  *  L  L  V  V  I  Q  Y  C  D  N  V  T  R  *  W  F  F  I  C  D  L  I  I  T  Y  S  S  I  S  N  D  V  C  I  T  *  L  W  F  I  K  S  V  A  *  G  A  E  I  *  R  K  R  V  V  F  D  T  S  F  A  C  L  C  *  S  C  C  F  W  *  P  *  E  C  *  Y  S  T  *  P  Y  F  P  T  C  I  S  *  W  R  Y  H  A  K  D  C  F  I  F  Y  *  G  F  S  *  *  D  S  K  E  L  A  W  S  L  *  G  V  A  F  D  *  V  I  G  C  L  R  R  N  S  C  *  E  D  V  F  R  D  L  S  F  L  E  G  G  V  C  G  H  K  S  S  Y  N  *  S  Y  G  R  *  K  D  G  S  Y  C  G  S  *  C  C  *  T  P  A  M  A  C  V  A  S  G  L  E  R  A  S  *  R  T  A  P  S  A  H  Y  W  G  S  S  A  K  R  G  V  R  S  N  G  T  C  A  Y  S  R  S  R  K  T  G  Y  P  F  S  V  Q  S  S  S  *  Q  I  G  K  S  *  C  *  E  T  S  R  E  N  G  G  G  S  C  D  *  F  N  Y  A  I  A  H  P  S  S  P  *  *  *  Q  E  V  P  F  A  F  *  A  F  K  W  C  *  L  K  Q  G  T  S  Q  P  K  Y  F  R  G  I  S  *  K  R  Y  G  *  W  L  Q  S  K  Q  *  H  R  F  F  I  P  A  M  F  N  W  F  N  K  D  G  *  F  P  Q  C  F  V  G  F  I  T  K  S  Y  G  G  N  R  T  R  C  *  P  *  W  D  N  S  Y  G  E  A  I  R  V  V  T  F  L  C  C  I  I  *  L  S  *  I  D  A  A  K  N  I  I  R  E  I  K  G  G  K  D  V  I  R  *  R  D  *  K  H  Y  S  M  *  R  D  R  T  K  G  E  A  *  K  A  R  K  V  V  P  K  I  R  H  I  W  F  W  E  C  A  F  E  L  L  C  Y  V  A  G  K  K  V  V  A  E  L  Q  L  *  R  I  Q  D  Q  R  R  *  W  L  R  G  D  M  L  A  G  S  P  T  F  L  S  V  V  L  A  M  *  E  V  R  L  N  L  V  F  I  V  M  F  *  I  C  I  F  L  L  L  L  *  H  N  V  *  N  S  S  W  *  N  C  Y  *  H  V  *  D  I  L  S  T  F  L  I  S  C  D  K  L  L  S  S  V  *  I  S  I  L  I  W  I  N  K  A  D  V  L  L  K :   E  K  D  Q  R  I  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67712" stop="69133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIVTMLQDDGSSSVTSSSPIQVFPMMSVSPSFGSSNQWLKELKSEERGLYLIHLLLACANHVASGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLSVVSEEILVRKMFFEIFPFLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQQKEVLDQMAHVLTQEAEKLDIPFQFNQVVSRLENLDVEKLRVKTGEALAISSIMQLHTLLAHDNDKKSPLPFKHSNGVNLNRALVNQNTLGEFLEKDMANGCSPSNDTASSSPLCSTGSTKMDSFLNALWGLSPKVMVVTEQDANHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEGIERKERHEKLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEDNGCVVICWQDRPLFSVSSWRCRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67484" stop="67711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWFIRKFSALIQDSFFYLSVGAPTILFPLTRTHNLRVEVRGVYDPNKSLLFFFFQLNPFEVCEFFFVGKTDNYLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67484" e_stop="69345"/>
            <exon e_start="71379" e_stop="71386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.820" acc_prob="0.969" e_score="0.997"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="67484" e_stop="69345" e_length="1862"/>
          </exon>
          <intron i_serial="1" don_prob="0.820" acc_prob="0.969">
            <gDNA_intron_boundary i_start="69346" i_stop="71378" i_length="2033"/>
          </intron>
          <exon e_serial="2" e_score="0.750">
            <gDNA_exon_boundary e_start="71379" e_stop="71386" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67484" stop="67821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67673" stop="68291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67673" stop="68237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67966" stop="68683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67978" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68181" stop="68858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68373" stop="68909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68631" stop="69345"/>
              <exon start="71379" stop="71386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68631" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68670" stop="69124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69050" stop="69338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGTTTATTAGGAAATTCTCTGCCTTGATTCAAGATTCCTTTTTTTACCTCTCTGTAGGAGCTCCCACCATTTTATTTCCCTTGACTCGAACTCACAACCTTAGGGTCGAGGTGAGGGGTGTTTACGATCCGAACAAGTCCCTCTTGTTTTTTTTCTTCCAATTGAACCCCTTTGAGGTATGTGAGTTTTTTTTTGTTGGGAAAACCGATAACTACTTGTTGTGATTCAGTATTGTGACAATGTTACAAGATGATGGTTCTTCATCTGTGACCTCATCATCACCTATTCAAGTATTTCCAATGATGTCTGTATCACCTAGCTTTGGTTCATCAAATCAGTGGCTTAAGGAGCTGAAATCTGAAGAAAGAGGGTTGTATTTGATACATCTTTTGCTTGCTTGTGCTAATCATGTTGCTTCTGGTAGCCTTGAGAATGCTAATATAGCACTTGACCATATTTCCCAACTTGCATCTCCTAGTGGAGATACCATGCAAAGGATTGCTTCATATTTTACTGAGGCTTTAGCTGATAGGATTCTAAGGAGTTGGCCTGGTCTTTATAAGGCGTTGCGTTCGACTAAGTTATCGGTTGTCTCAGAAGAAATTCTTGTTAGGAAGATGTTTTTCGAGATCTTTCCTTTCTTGAAGGTGGCGTTTGTGGTCACAAATCAAGCTATAATTGAAGCTATGGAAGGTGAAAAGATGGTTCATATTGTGGATCTTAATGCTGCTGAACCCCTGCAATGGCGTGCGTTGCTTCAGGACTTGAGCGCGCGTCCTGAAGGACCGCCCCATCTGCGCATTACTGGGGTTCATCAGCAAAAAGAGGTGTTAGATCAAATGGCACATGTGCTTACTCAAGAAGCAGAAAAACTGGATATCCCTTTTCAGTTCAATCAAGTAGTTAGCAGATTGGAAAATCTTGATGTTGAGAAACTTCGCGTGAAAACGGGGGAGGCTCTTGCGATTAGTTCAATTATGCAATTGCACACCCTTCTAGCCCATGATAATGACAAGAAGTCCCCTTTGCCTTTTAAGCATTCAAATGGTGTTAACTTAAACAGGGCACTAGTCAACCAAAATACTTTAGGGGAATTTCTTGAAAAAGATATGGCTAATGGTTGCAGTCCAAGCAATGACACCGCTTCTTCATCCCCGCTATGTTCAACTGGTTCAACAAAGATGGATAGTTTCCTCAATGCTTTGTGGGGTTTATCACCAAAAGTTATGGTGGTAACAGAACAAGATGCTAACCATAATGGGACAACTCTTATGGAGAGGCTATCAGAGTCGTTACATTTTTATGCTGCATTATTTGATTGTCTTGAATCGACGCTGCCAAGAACATCATTAGAGAGATTAAAGGTGGAAAAGATGTTATTAGGTGAAGAGATTAGAAACATTATAGCATGTGAAGGGATCGAACGAAAGGAGAGGCATGAAAAGCTCGAAAAGTGGTTCCAAAGATTCGACACATCTGGTTTTGGGAATGTGCCTTTGAGTTATTATGCTATGTTGCAGGCAAGAAGGTTGTTGCAGAGTTACAGTTGTGAAGGATACAAGATCAAAGAAGATAATGGTTGCGTGGTGATATGCTGGCAGGATCGCCCACTTTTCTCAGTGTCGTCTTGGCGATGTAGGAAGTGAGACTAAACTTAGTTTTCATTGTAATGTTTTAGATTTGTATCTTCCTTTTGTTGTTGTAACATAATGTGTAGAACTCCAGTTGGTGAAACTGCTATTGACATGTTTGAGACATTTTGTCAACTTTTTTGATCTCATGTGATAAGCTTCTCTCTAGTGTTTAGATTTCCATTTTGATATGGATCAATAAAGCTGATGTTCTCTTAAAGTTTCTG : AGAAAAAG</gDNA_template>
            <first_frame> I  W  F  I  R  K  F  S  A  L  I  Q  D  S  F  F  Y  L  S  V  G  A  P  T  I  L  F  P  L  T  R  T  H  N  L  R  V  E  V  R  G  V  Y  D  P  N  K  S  L  L  F  F  F  F  Q  L  N  P  F  E  V  C  E  F  F  F  V  G  K  T  D  N  Y  L  L  *  F  S  I  V  T  M  L  Q  D  D  G  S  S  S  V  T  S  S  S  P  I  Q  V  F  P  M  M  S  V  S  P  S  F  G  S  S  N  Q  W  L  K  E  L  K  S  E  E  R  G  L  Y  L  I  H  L  L  L  A  C  A  N  H  V  A  S  G  S  L  E  N  A  N  I  A  L  D  H  I  S  Q  L  A  S  P  S  G  D  T  M  Q  R  I  A  S  Y  F  T  E  A  L  A  D  R  I  L  R  S  W  P  G  L  Y  K  A  L  R  S  T  K  L  S  V  V  S  E  E  I  L  V  R  K  M  F  F  E  I  F  P  F  L  K  V  A  F  V  V  T  N  Q  A  I  I  E  A  M  E  G  E  K  M  V  H  I  V  D  L  N  A  A  E  P  L  Q  W  R  A  L  L  Q  D  L  S  A  R  P  E  G  P  P  H  L  R  I  T  G  V  H  Q  Q  K  E  V  L  D  Q  M  A  H  V  L  T  Q  E  A  E  K  L  D  I  P  F  Q  F  N  Q  V  V  S  R  L  E  N  L  D  V  E  K  L  R  V  K  T  G  E  A  L  A  I  S  S  I  M  Q  L  H  T  L  L  A  H  D  N  D  K  K  S  P  L  P  F  K  H  S  N  G  V  N  L  N  R  A  L  V  N  Q  N  T  L  G  E  F  L  E  K  D  M  A  N  G  C  S  P  S  N  D  T  A  S  S  S  P  L  C  S  T  G  S  T  K  M  D  S  F  L  N  A  L  W  G  L  S  P  K  V  M  V  V  T  E  Q  D  A  N  H  N  G  T  T  L  M  E  R  L  S  E  S  L  H  F  Y  A  A  L  F  D  C  L  E  S  T  L  P  R  T  S  L  E  R  L  K  V  E  K  M  L  L  G  E  E  I  R  N  I  I  A  C  E  G  I  E  R  K  E  R  H  E  K  L  E  K  W  F  Q  R  F  D  T  S  G  F  G  N  V  P  L  S  Y  Y  A  M  L  Q  A  R  R  L  L  Q  S  Y  S  C  E  G  Y  K  I  K  E  D  N  G  C  V  V  I  C  W  Q  D  R  P  L  F  S  V  S  S  W  R  C  R  K  *  D  *  T  *  F  S  L  *  C  F  R  F  V  S  S  F  C  C  C  N  I  M  C  R  T  P  V  G  E  T  A  I  D  M  F  E  T  F  C  Q  L  F  *  S  H  V  I  S  F  S  L  V  F  R  F  P  F  *  Y  G  S  I  K  L  M  F  S  *  S  F  * :   E  K  </first_frame>
            <second_frame>  Y  G  L  L  G  N  S  L  P  *  F  K  I  P  F  F  T  S  L  *  E  L  P  P  F  Y  F  P  *  L  E  L  T  T  L  G  S  R  *  G  V  F  T  I  R  T  S  P  S  C  F  F  S  S  N  *  T  P  L  R  Y  V  S  F  F  L  L  G  K  P  I  T  T  C  C  D  S  V  L  *  Q  C  Y  K  M  M  V  L  H  L  *  P  H  H  H  L  F  K  Y  F  Q  *  C  L  Y  H  L  A  L  V  H  Q  I  S  G  L  R  S  *  N  L  K  K  E  G  C  I  *  Y  I  F  C  L  L  V  L  I  M  L  L  L  V  A  L  R  M  L  I  *  H  L  T  I  F  P  N  L  H  L  L  V  E  I  P  C  K  G  L  L  H  I  L  L  R  L  *  L  I  G  F  *  G  V  G  L  V  F  I  R  R  C  V  R  L  S  Y  R  L  S  Q  K  K  F  L  L  G  R  C  F  S  R  S  F  L  S  *  R  W  R  L  W  S  Q  I  K  L  *  L  K  L  W  K  V  K  R  W  F  I  L  W  I  L  M  L  L  N  P  C  N  G  V  R  C  F  R  T  *  A  R  V  L  K  D  R  P  I  C  A  L  L  G  F  I  S  K  K  R  C  *  I  K  W  H  M  C  L  L  K  K  Q  K  N  W  I  S  L  F  S  S  I  K  *  L  A  D  W  K  I  L  M  L  R  N  F  A  *  K  R  G  R  L  L  R  L  V  Q  L  C  N  C  T  P  F  *  P  M  I  M  T  R  S  P  L  C  L  L  S  I  Q  M  V  L  T  *  T  G  H  *  S  T  K  I  L  *  G  N  F  L  K  K  I  W  L  M  V  A  V  Q  A  M  T  P  L  L  H  P  R  Y  V  Q  L  V  Q  Q  R  W  I  V  S  S  M  L  C  G  V  Y  H  Q  K  L  W  W  *  Q  N  K  M  L  T  I  M  G  Q  L  L  W  R  G  Y  Q  S  R  Y  I  F  M  L  H  Y  L  I  V  L  N  R  R  C  Q  E  H  H  *  R  D  *  R  W  K  R  C  Y  *  V  K  R  L  E  T  L  *  H  V  K  G  S  N  E  R  R  G  M  K  S  S  K  S  G  S  K  D  S  T  H  L  V  L  G  M  C  L  *  V  I  M  L  C  C  R  Q  E  G  C  C  R  V  T  V  V  K  D  T  R  S  K  K  I  M  V  A  W  *  Y  A  G  R  I  A  H  F  S  Q  C  R  L  G  D  V  G  S  E  T  K  L  S  F  H  C  N  V  L  D  L  Y  L  P  F  V  V  V  T  *  C  V  E  L  Q  L  V  K  L  L  L  T  C  L  R  H  F  V  N  F  F  D  L  M  *  *  A  S  L  *  C  L  D  F  H  F  D  M  D  Q  *  S  *  C  S  L  K  V  S   : E  K  K </second_frame>
            <third_frame>   M  V  Y  *  E  I  L  C  L  D  S  R  F  L  F  L  P  L  C  R  S  S  H  H  F  I  S  L  D  S  N  S  Q  P  *  G  R  G  E  G  C  L  R  S  E  Q  V  P  L  V  F  F  L  P  I  E  P  L  *  G  M  *  V  F  F  C  W  E  N  R  *  L  L  V  V  I  Q  Y  C  D  N  V  T  R  *  W  F  F  I  C  D  L  I  I  T  Y  S  S  I  S  N  D  V  C  I  T  *  L  W  F  I  K  S  V  A  *  G  A  E  I  *  R  K  R  V  V  F  D  T  S  F  A  C  L  C  *  S  C  C  F  W  *  P  *  E  C  *  Y  S  T  *  P  Y  F  P  T  C  I  S  *  W  R  Y  H  A  K  D  C  F  I  F  Y  *  G  F  S  *  *  D  S  K  E  L  A  W  S  L  *  G  V  A  F  D  *  V  I  G  C  L  R  R  N  S  C  *  E  D  V  F  R  D  L  S  F  L  E  G  G  V  C  G  H  K  S  S  Y  N  *  S  Y  G  R  *  K  D  G  S  Y  C  G  S  *  C  C  *  T  P  A  M  A  C  V  A  S  G  L  E  R  A  S  *  R  T  A  P  S  A  H  Y  W  G  S  S  A  K  R  G  V  R  S  N  G  T  C  A  Y  S  R  S  R  K  T  G  Y  P  F  S  V  Q  S  S  S  *  Q  I  G  K  S  *  C  *  E  T  S  R  E  N  G  G  G  S  C  D  *  F  N  Y  A  I  A  H  P  S  S  P  *  *  *  Q  E  V  P  F  A  F  *  A  F  K  W  C  *  L  K  Q  G  T  S  Q  P  K  Y  F  R  G  I  S  *  K  R  Y  G  *  W  L  Q  S  K  Q  *  H  R  F  F  I  P  A  M  F  N  W  F  N  K  D  G  *  F  P  Q  C  F  V  G  F  I  T  K  S  Y  G  G  N  R  T  R  C  *  P  *  W  D  N  S  Y  G  E  A  I  R  V  V  T  F  L  C  C  I  I  *  L  S  *  I  D  A  A  K  N  I  I  R  E  I  K  G  G  K  D  V  I  R  *  R  D  *  K  H  Y  S  M  *  R  D  R  T  K  G  E  A  *  K  A  R  K  V  V  P  K  I  R  H  I  W  F  W  E  C  A  F  E  L  L  C  Y  V  A  G  K  K  V  V  A  E  L  Q  L  *  R  I  Q  D  Q  R  R  *  W  L  R  G  D  M  L  A  G  S  P  T  F  L  S  V  V  L  A  M  *  E  V  R  L  N  L  V  F  I  V  M  F  *  I  C  I  F  L  L  L  L  *  H  N  V  *  N  S  S  W  *  N  C  Y  *  H  V  *  D  I  L  S  T  F  L  I  S  C  D  K  L  L  S  S  V  *  I  S  I  L  I  W  I  N  K  A  D  V  L  L  K  F  L  :  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67712" stop="69133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIVTMLQDDGSSSVTSSSPIQVFPMMSVSPSFGSSNQWLKELKSEERGLYLIHLLLACANHVASGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLSVVSEEILVRKMFFEIFPFLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQQKEVLDQMAHVLTQEAEKLDIPFQFNQVVSRLENLDVEKLRVKTGEALAISSIMQLHTLLAHDNDKKSPLPFKHSNGVNLNRALVNQNTLGEFLEKDMANGCSPSNDTASSSPLCSTGSTKMDSFLNALWGLSPKVMVVTEQDANHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEGIERKERHEKLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEDNGCVVICWQDRPLFSVSSWRCRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67484" stop="67711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWFIRKFSALIQDSFFYLSVGAPTILFPLTRTHNLRVEVRGVYDPNKSLLFFFFQLNPFEVCEFFFVGKTDNYLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="69342" PGL_stop="68896"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69342" e_stop="68896"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="69342" e_stop="68896" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69342" stop="68896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTTAAGAGAACATCAGCTTTATTGATCCATATCAAAATGGAAATCTAAACACTAGAGAGAAGCTTATCACATGAGATCAAAAAAGTTGACAAAATGTCTCAAACATGTCAATAGCAGTTTCACCAACTGGAGTTCTACACATTATGTTACAACAACAAAAGGAAGATACAAATCTAAAACATTACAATGAAAACTAAGTTTAGTCTCACTTCCTACATCGCCAAGACGACACTGAGAAAAGTGGGCGATCCTGCCAGCATATCACCACGCAACCATTATCTTCTTTGATCTTGTATCCTTCACAACTGTAACTCTGCAACAACCTTCTTGCCTGCAACATAGCATAATAACTCAAAGGCACATTCCCAAAACCAGATGTGTCGAATCTTTGGAACCACTTTTCGAGCTTTTCATGCCTCTCCTTTCGTTCGATCCCTTCACAT</gDNA_template>
            <first_frame> K  L  *  E  N  I  S  F  I  D  P  Y  Q  N  G  N  L  N  T  R  E  K  L  I  T  *  D  Q  K  S  *  Q  N  V  S  N  M  S  I  A  V  S  P  T  G  V  L  H  I  M  L  Q  Q  Q  K  E  D  T  N  L  K  H  Y  N  E  N  *  V  *  S  H  F  L  H  R  Q  D  D  T  E  K  S  G  R  S  C  Q  H  I  T  T  Q  P  L  S  S  L  I  L  Y  P  S  Q  L  *  L  C  N  N  L  L  A  C  N  I  A  *  *  L  K  G  T  F  P  K  P  D  V  S  N  L  W  N  H  F  S  S  F  S  C  L  S  F  R  S  I  P  S  H </first_frame>
            <second_frame>  N  F  K  R  T  S  A  L  L  I  H  I  K  M  E  I  *  T  L  E  R  S  L  S  H  E  I  K  K  V  D  K  M  S  Q  T  C  Q  *  Q  F  H  Q  L  E  F  Y  T  L  C  Y  N  N  K  R  K  I  Q  I  *  N  I  T  M  K  T  K  F  S  L  T  S  Y  I  A  K  T  T  L  R  K  V  G  D  P  A  S  I  S  P  R  N  H  Y  L  L  *  S  C  I  L  H  N  C  N  S  A  T  T  F  L  P  A  T  *  H  N  N  S  K  A  H  S  Q  N  Q  M  C  R  I  F  G  T  T  F  R  A  F  H  A  S  P  F  V  R  S  L  H   </second_frame>
            <third_frame>   T  L  R  E  H  Q  L  Y  *  S  I  S  K  W  K  S  K  H  *  R  E  A  Y  H  M  R  S  K  K  L  T  K  C  L  K  H  V  N  S  S  F  T  N  W  S  S  T  H  Y  V  T  T  T  K  G  R  Y  K  S  K  T  L  Q  *  K  L  S  L  V  S  L  P  T  S  P  R  R  H  *  E  K  W  A  I  L  P  A  Y  H  H  A  T  I  I  F  F  D  L  V  S  F  T  T  V  T  L  Q  Q  P  S  C  L  Q  H  S  I  I  T  Q  R  H  I  P  K  T  R  C  V  E  S  L  E  P  L  F  E  L  F  M  P  L  L  S  F  D  P  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69103" stop="68897"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKWAILPAYHHATIIFFDLVSFTTVTLQQPSCLQHSIITQRHIPKTRCVESLEPLFELFMPLLSFDPFT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="88517" PGL_stop="81459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88517" e_stop="88427"/>
            <exon e_start="88335" e_stop="88105"/>
            <exon e_start="87854" e_stop="87699"/>
            <exon e_start="87615" e_stop="87438"/>
            <exon e_start="87333" e_stop="87152"/>
            <exon e_start="85711" e_stop="85358"/>
            <exon e_start="85273" e_stop="85180"/>
            <exon e_start="84981" e_stop="84084"/>
            <exon e_start="81481" e_stop="81459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.956"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.493" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.903" e_score="0.999"/>
          <exon-only e_score="0.870"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="88517" e_stop="88427" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88426" i_stop="88336" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88335" e_stop="88105" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="88104" i_stop="87855" i_length="250"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87854" e_stop="87699" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.781">
            <gDNA_intron_boundary i_start="87698" i_stop="87616" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87615" e_stop="87438" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.674">
            <gDNA_intron_boundary i_start="87437" i_stop="87334" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87333" e_stop="87152" e_length="182"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="87151" i_stop="85712" i_length="1440"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85711" e_stop="85358" e_length="354"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="85357" i_stop="85274" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85273" e_stop="85180" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.493">
            <gDNA_intron_boundary i_start="85179" i_stop="84982" i_length="198"/>
          </intron>
          <exon e_serial="8" e_score="0.999">
            <gDNA_exon_boundary e_start="84981" e_stop="84084" e_length="898"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.903">
            <gDNA_intron_boundary i_start="84083" i_stop="81482" i_length="2602"/>
          </intron>
          <exon e_serial="9" e_score="0.870">
            <gDNA_exon_boundary e_start="81481" e_stop="81459" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88517" stop="88427"/>
              <exon start="88335" stop="88105"/>
              <exon start="87854" stop="87741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88281" stop="88105"/>
              <exon start="87854" stop="87699"/>
              <exon start="87615" stop="87462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88245" stop="88105"/>
              <exon start="87854" stop="87699"/>
              <exon start="87615" stop="87438"/>
              <exon start="87333" stop="87152"/>
              <exon start="85711" stop="85597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88189" stop="88105"/>
              <exon start="87854" stop="87699"/>
              <exon start="87615" stop="87438"/>
              <exon start="87333" stop="87152"/>
              <exon start="85711" stop="85690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87555" stop="87438"/>
              <exon start="87333" stop="87152"/>
              <exon start="85711" stop="85365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87494" stop="87438"/>
              <exon start="87333" stop="87152"/>
              <exon start="85711" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87494" stop="87438"/>
              <exon start="87333" stop="87152"/>
              <exon start="85711" stop="85441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85610" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85470" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85469" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85469" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85418" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85418" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85418" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85401" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85365" stop="85358"/>
              <exon start="85273" stop="85180"/>
              <exon start="84981" stop="84660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84831" stop="84084"/>
              <exon start="81481" stop="81459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84831" stop="84084"/>
              <exon start="81481" stop="81459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84653" stop="84194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84653" stop="84221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTATGCAGGTTGCCAATTTCTGTGGTGCTGAAGATGATGCAACTTTTTGGAGTCGATGGATAAAGCCAGAAGCAACTGCACACGCTGAA : GACGCTTTGGCTCCTCGAGCTGCTCGAAATAAAAAGAGTTATGCAGAAGCTAGCCCGCTGGTGGTTACTAATAAAAGAAAGAAGGGTGGTGATGCTCAGGAAAGGTTCCCAAAGCGTCGCAAGGGAGATTTTAGCTGCACACTTCCGGCAATTGATGGTGCTTCCGCTCAAGTGAGAGGATGGTCTTTTGGGAACTTGTCAAAAAGAGACGCCACACGTTTTTCTCGTGAG : GTCAAGAAGTTTGGGAATGATAGCCAAATTGACTTAATATCATCAGAGGTTGGTGGGGCAGTTGAAGCTGCACCAACTGAAGCTCAAGTTGAGCTTTTTGACTCATTGATTGATGGCTGTAGAGAAGCAGTTAAAGGTGAAGTTGTTGATCCAAAG : GGACCTCTTTTAGATTTTTTTGGTGTTCCTGTGAAGGCTGATGAACTATTGGCCCGTGTTGAGGAACTTCAACTCCTAGCAAAGCGCATTTCTCGATATGCAGATCCTGTCTCACAGTTCCGTGCTTTGGCTTATCTAAAGCCTGCAACTTGGTCTAAAGGTTGTGGCTGGAACCAGA : AGGATGACGCCAGACTGCTTCTTGGAATTCATTATCACGGATTTGGCAACTGGGAAAAGATACGATTAGATGAAAAACTTGGCCTCATGAAGAAGATTGCTCCAGTGGAATTACAACATCATGAGACTTTCTTGCCAAGAGCTCCACAATTGAAGGAGAGAGCTTCTCAACTTCTGCAAATG : GAAGTTGCAGCTGTTGGTGGGAAGAACACTAGTTTAAAAGTGGGTCGTAAAACTTCCAACAAGCAGAAGGAAAGCCTTCCCAGCACAACAGCATCTCTTGGAAAGGGTAAACAAAGTAAATTAAGCTCATCTGGAAATGCTAAAATGGGTAGAGGCAGAGCTGCAAAAGGTCAAAAAAAGGTTGAGCCGTTGATAAAAGAGGAAGGTGAAATGTCAGATAATGAAGAAGTTTATGAGCAGTTTAAAGAGGTGAAATGGATGGAATGGTGTGAAGATGTGATGGTGTATGAGGAAAAGACGCTTAAGCGTCTTCAAAGATTGCAGACTACTAGTGCTGATCTCCCCAAGGACAAG : GTGTTGGCCAAAATACGGAACTACTTGCAGCTTCTTGGTCGCAGGATTGATCAAATAGTTTTTGAATATGAGAACGAATCACATAAGCAAGAAA : GGATGACAGTCCGTTTATGGAATTATGTCTCAACATTTTCAAATTTGTCTGGCGAGAAGCTTCGTCAGATTTATTCTAAACTTAAGCAGGAGCAACATGTAGAAGGACGGGTAGGACCGTCGCAGTTTAATGGTTCTGCACCTGCGCATCCAACGCCAGGTTTTGTACCTCGAGGTTTTGATGCAGCCAAATTTGAAGCATGGAAACGAAGGAAAAGAGCTGAAGCTGATGTTCATTCGCAAGTTCAGCCCCAACATCAAAGAGCTTTGACTAATGGTACACGCCTTCCTGAACCCAACTTGTCATCAGGGATTCTTGGCGCAGCTCCTTTAGATAGCAAACAGTCAGGTAGTGGTAGGCCTTACAGAACACATCAATCTGGCCTGCCTCAGAGACCAGGTTTCTCGTCCGGTCCCAGATAGCTTCTTCTACTGGACATTAACTGCCATGGTGCCCCTGCAGGAAAGCCATTCAATTTTGTCTCAGTGGCTTTTGCTGCTTCGATCTATATTCTTTACCTGGAATTGCGCTGGTCTATGGGAATACAAATTTTTGCTCATTCCTTGACCACATACCTGCTATTTTGAAGCCAACTGTAAACCAAAGGACTGCATCATTTAGAAGCCAGAAAGAGTGAACTTGGAGGCGCCTTTCCTAGATCCAGGAGATGAAGATTTTGTTCTATTGGAATTTCTAGGGCACACAGATTTCTTCCCCTTACAGATAAAATCCCAGTCTTTTTTTTTTGGCTGTTTTGAAGTATATAATGGATAGTGAAAGAGCATATTTCTTTAGGTTATATGTGACAGTTTGTCACAGTCTGTATGTATTATGCTTTTTGCGAAGTGTACATTATCAAATTTTGCTTATTCAATAACTCAACAACATTATTCTTTAC : GCCGGAAAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> S  Y  A  G  C  Q  F  L  W  C  *  R  *  C  N  F  L  E  S  M  D  K  A  R  S  N  C  T  R  *   : R  R  F  G  S  S  S  C  S  K  *  K  E  L  C  R  S  *  P  A  G  G  Y  *  *  K  K  E  G  W  *  C  S  G  K  V  P  K  A  S  Q  G  R  F  *  L  H  T  S  G  N  *  W  C  F  R  S  S  E  R  M  V  F  W  E  L  V  K  K  R  R  H  T  F  F  S  *   : G  Q  E  V  W  E  *  *  P  N  *  L  N  I  I  R  G  W  W  G  S  *  S  C  T  N  *  S  S  S  *  A  F  *  L  I  D  *  W  L  *  R  S  S  *  R  *  S  C  *  S  K   : G  T  S  F  R  F  F  W  C  S  C  E  G  *  *  T  I  G  P  C  *  G  T  S  T  P  S  K  A  H  F  S  I  C  R  S  C  L  T  V  P  C  F  G  L  S  K  A  C  N  L  V  *  R  L  W  L  E  P  E :   G  *  R  Q  T  A  S  W  N  S  L  S  R  I  W  Q  L  G  K  D  T  I  R  *  K  T  W  P  H  E  E  D  C  S  S  G  I  T  T  S  *  D  F  L  A  K  S  S  T  I  E  G  E  S  F  S  T  S  A  N   : G  S  C  S  C  W  W  E  E  H  *  F  K  S  G  S  *  N  F  Q  Q  A  E  G  K  P  S  Q  H  N  S  I  S  W  K  G  *  T  K  *  I  K  L  I  W  K  C  *  N  G  *  R  Q  S  C  K  R  S  K  K  G  *  A  V  D  K  R  G  R  *  N  V  R  *  *  R  S  L  *  A  V  *  R  G  E  M  D  G  M  V  *  R  C  D  G  V  *  G  K  D  A  *  A  S  S  K  I  A  D  Y  *  C  *  S  P  Q  G  Q   : G  V  G  Q  N  T  E  L  L  A  A  S  W  S  Q  D  *  S  N  S  F  *  I  *  E  R  I  T  *  A  R  K :   D  D  S  P  F  M  E  L  C  L  N  I  F  K  F  V  W  R  E  A  S  S  D  L  F  *  T  *  A  G  A  T  C  R  R  T  G  R  T  V  A  V  *  W  F  C  T  C  A  S  N  A  R  F  C  T  S  R  F  *  C  S  Q  I  *  S  M  E  T  K  E  K  S  *  S  *  C  S  F  A  S  S  A  P  T  S  K  S  F  D  *  W  Y  T  P  S  *  T  Q  L  V  I  R  D  S  W  R  S  S  F  R  *  Q  T  V  R  *  W  *  A  L  Q  N  T  S  I  W  P  A  S  E  T  R  F  L  V  R  S  Q  I  A  S  S  T  G  H  *  L  P  W  C  P  C  R  K  A  I  Q  F  C  L  S  G  F  C  C  F  D  L  Y  S  L  P  G  I  A  L  V  Y  G  N  T  N  F  C  S  F  L  D  H  I  P  A  I  L  K  P  T  V  N  Q  R  T  A  S  F  R  S  Q  K  E  *  T  W  R  R  L  S  *  I  Q  E  M  K  I  L  F  Y  W  N  F  *  G  T  Q  I  S  S  P  Y  R  *  N  P  S  L  F  F  L  A  V  L  K  Y  I  M  D  S  E  R  A  Y  F  F  R  L  Y  V  T  V  C  H  S  L  Y  V  L  C  F  L  R  S  V  H  Y  Q  I  L  L  I  Q  *  L  N  N  I  I  L  Y  :  A  G  K  K  K  K  K   </first_frame>
            <second_frame>  P  M  Q  V  A  N  F  C  G  A  E  D  D  A  T  F  W  S  R  W  I  K  P  E  A  T  A  H  A  E  :  D  A  L  A  P  R  A  A  R  N  K  K  S  Y  A  E  A  S  P  L  V  V  T  N  K  R  K  K  G  G  D  A  Q  E  R  F  P  K  R  R  K  G  D  F  S  C  T  L  P  A  I  D  G  A  S  A  Q  V  R  G  W  S  F  G  N  L  S  K  R  D  A  T  R  F  S  R  E  :  V  K  K  F  G  N  D  S  Q  I  D  L  I  S  S  E  V  G  G  A  V  E  A  A  P  T  E  A  Q  V  E  L  F  D  S  L  I  D  G  C  R  E  A  V  K  G  E  V  V  D  P  K  :  G  P  L  L  D  F  F  G  V  P  V  K  A  D  E  L  L  A  R  V  E  E  L  Q  L  L  A  K  R  I  S  R  Y  A  D  P  V  S  Q  F  R  A  L  A  Y  L  K  P  A  T  W  S  K  G  C  G  W  N  Q   : K  D  D  A  R  L  L  L  G  I  H  Y  H  G  F  G  N  W  E  K  I  R  L  D  E  K  L  G  L  M  K  K  I  A  P  V  E  L  Q  H  H  E  T  F  L  P  R  A  P  Q  L  K  E  R  A  S  Q  L  L  Q  M  :  E  V  A  A  V  G  G  K  N  T  S  L  K  V  G  R  K  T  S  N  K  Q  K  E  S  L  P  S  T  T  A  S  L  G  K  G  K  Q  S  K  L  S  S  S  G  N  A  K  M  G  R  G  R  A  A  K  G  Q  K  K  V  E  P  L  I  K  E  E  G  E  M  S  D  N  E  E  V  Y  E  Q  F  K  E  V  K  W  M  E  W  C  E  D  V  M  V  Y  E  E  K  T  L  K  R  L  Q  R  L  Q  T  T  S  A  D  L  P  K  D  K  :  V  L  A  K  I  R  N  Y  L  Q  L  L  G  R  R  I  D  Q  I  V  F  E  Y  E  N  E  S  H  K  Q  E   : R  M  T  V  R  L  W  N  Y  V  S  T  F  S  N  L  S  G  E  K  L  R  Q  I  Y  S  K  L  K  Q  E  Q  H  V  E  G  R  V  G  P  S  Q  F  N  G  S  A  P  A  H  P  T  P  G  F  V  P  R  G  F  D  A  A  K  F  E  A  W  K  R  R  K  R  A  E  A  D  V  H  S  Q  V  Q  P  Q  H  Q  R  A  L  T  N  G  T  R  L  P  E  P  N  L  S  S  G  I  L  G  A  A  P  L  D  S  K  Q  S  G  S  G  R  P  Y  R  T  H  Q  S  G  L  P  Q  R  P  G  F  S  S  G  P  R  *  L  L  L  L  D  I  N  C  H  G  A  P  A  G  K  P  F  N  F  V  S  V  A  F  A  A  S  I  Y  I  L  Y  L  E  L  R  W  S  M  G  I  Q  I  F  A  H  S  L  T  T  Y  L  L  F  *  S  Q  L  *  T  K  G  L  H  H  L  E  A  R  K  S  E  L  G  G  A  F  P  R  S  R  R  *  R  F  C  S  I  G  I  S  R  A  H  R  F  L  P  L  T  D  K  I  P  V  F  F  F  W  L  F  *  S  I  *  W  I  V  K  E  H  I  S  L  G  Y  M  *  Q  F  V  T  V  C  M  Y  Y  A  F  C  E  V  Y  I  I  K  F  C  L  F  N  N  S  T  T  L  F  F  T :   P  E  K  K  K  K  K  </second_frame>
            <third_frame>   L  C  R  L  P  I  S  V  V  L  K  M  M  Q  L  F  G  V  D  G  *  S  Q  K  Q  L  H  T  L  K :   T  L  W  L  L  E  L  L  E  I  K  R  V  M  Q  K  L  A  R  W  W  L  L  I  K  E  R  R  V  V  M  L  R  K  G  S  Q  S  V  A  R  E  I  L  A  A  H  F  R  Q  L  M  V  L  P  L  K  *  E  D  G  L  L  G  T  C  Q  K  E  T  P  H  V  F  L  V  R :   S  R  S  L  G  M  I  A  K  L  T  *  Y  H  Q  R  L  V  G  Q  L  K  L  H  Q  L  K  L  K  L  S  F  L  T  H  *  L  M  A  V  E  K  Q  L  K  V  K  L  L  I  Q  R :   D  L  F  *  I  F  L  V  F  L  *  R  L  M  N  Y  W  P  V  L  R  N  F  N  S  *  Q  S  A  F  L  D  M  Q  I  L  S  H  S  S  V  L  W  L  I  *  S  L  Q  L  G  L  K  V  V  A  G  T  R  :  R  M  T  P  D  C  F  L  E  F  I  I  T  D  L  A  T  G  K  R  Y  D  *  M  K  N  L  A  S  *  R  R  L  L  Q  W  N  Y  N  I  M  R  L  S  C  Q  E  L  H  N  *  R  R  E  L  L  N  F  C  K  W :   K  L  Q  L  L  V  G  R  T  L  V  *  K  W  V  V  K  L  P  T  S  R  R  K  A  F  P  A  Q  Q  H  L  L  E  R  V  N  K  V  N  *  A  H  L  E  M  L  K  W  V  E  A  E  L  Q  K  V  K  K  R  L  S  R  *  *  K  R  K  V  K  C  Q  I  M  K  K  F  M  S  S  L  K  R  *  N  G  W  N  G  V  K  M  *  W  C  M  R  K  R  R  L  S  V  F  K  D  C  R  L  L  V  L  I  S  P  R  T  R :   C  W  P  K  Y  G  T  T  C  S  F  L  V  A  G  L  I  K  *  F  L  N  M  R  T  N  H  I  S  K  K  :  G  *  Q  S  V  Y  G  I  M  S  Q  H  F  Q  I  C  L  A  R  S  F  V  R  F  I  L  N  L  S  R  S  N  M  *  K  D  G  *  D  R  R  S  L  M  V  L  H  L  R  I  Q  R  Q  V  L  Y  L  E  V  L  M  Q  P  N  L  K  H  G  N  E  G  K  E  L  K  L  M  F  I  R  K  F  S  P  N  I  K  E  L  *  L  M  V  H  A  F  L  N  P  T  C  H  Q  G  F  L  A  Q  L  L  *  I  A  N  S  Q  V  V  V  G  L  T  E  H  I  N  L  A  C  L  R  D  Q  V  S  R  P  V  P  D  S  F  F  Y  W  T  L  T  A  M  V  P  L  Q  E  S  H  S  I  L  S  Q  W  L  L  L  L  R  S  I  F  F  T  W  N  C  A  G  L  W  E  Y  K  F  L  L  I  P  *  P  H  T  C  Y  F  E  A  N  C  K  P  K  D  C  I  I  *  K  P  E  R  V  N  L  E  A  P  F  L  D  P  G  D  E  D  F  V  L  L  E  F  L  G  H  T  D  F  F  P  L  Q  I  K  S  Q  S  F  F  F  G  C  F  E  V  Y  N  G  *  *  K  S  I  F  L  *  V  I  C  D  S  L  S  Q  S  V  C  I  M  L  F  A  K  C  T  L  S  N  F  A  Y  S  I  T  Q  Q  H  Y  S  L   : R  R  K  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88516" stop="88427"/>
                    <exon start="88335" stop="88105"/>
                    <exon start="87854" stop="87699"/>
                    <exon start="87615" stop="87438"/>
                    <exon start="87333" stop="87152"/>
                    <exon start="85711" stop="85358"/>
                    <exon start="85273" stop="85180"/>
                    <exon start="84981" stop="84560"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1704</number_coding_nucleotides>
                  <number_encoded_amino_acids>568</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMQVANFCGAEDDATFWSRWIKPEATAHAEDALAPRAARNKKSYAEASPLVVTNKRKKGGDAQERFPKRRKGDFSCTLPAIDGASAQVRGWSFGNLSKRDATRFSREVKKFGNDSQIDLISSEVGGAVEAAPTEAQVELFDSLIDGCREAVKGEVVDPKGPLLDFFGVPVKADELLARVEELQLLAKRISRYADPVSQFRALAYLKPATWSKGCGWNQKDDARLLLGIHYHGFGNWEKIRLDEKLGLMKKIAPVELQHHETFLPRAPQLKERASQLLQMEVAAVGGKNTSLKVGRKTSNKQKESLPSTTASLGKGKQSKLSSSGNAKMGRGRAAKGQKKVEPLIKEEGEMSDNEEVYEQFKEVKWMEWCEDVMVYEEKTLKRLQRLQTTSADLPKDKVLAKIRNYLQLLGRRIDQIVFEYENESHKQERMTVRLWNYVSTFSNLSGEKLRQIYSKLKQEQHVEGRVGPSQFNGSAPAHPTPGFVPRGFDAAKFEAWKRRKRAEADVHSQVQPQHQRALTNGTRLPEPNLSSGILGAAPLDSKQSGSGRPYRTHQSGLPQRPGFSSGPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84539" stop="84345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPWCPCRKAIQFCLSGFCCFDLYSLPGIALVYGNTNFCSFLDHIPAILKPTVNQRTASFRSQKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="92480" PGL_stop="91839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92480" e_stop="91839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="92480" e_stop="91839" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92480" stop="91839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTCATCTTTTAAGCATAGTACATCGTTGAATTCAGGGCGTTGACTAAAAATTTCACTTCCCTGGCAATGAAAAAAGAGAGAAGAGAATGCAGGCCATGTAACTTCCTAGTAATGATTATGGTGTTGCCTCTATGCAATGGATGTGTTTGACATCATAAATGGAATTGCTCATCAAAGTTTCTCAAGTTCCATTCTCGAAGAATGTCAATTTTTTCTGCTTCAGTATCTCCAAGTTCATTCTCTTAAATTCTTTAGTGTCTAGCTGTCTCACTAGCTGCAGGGTGTATTTGTATGCTCATTCTATTAATTAAGACACTCTTTATGAGCATTTTTGAGGCAAAACCTTTTGTTTCTGACTTCTTGTTTTAAAATTGAATTGTATTCTCCTTCTGTCATGACTAGCTACTCAATCTCTTCTTTTTTCGCTTATCCAGTAGTCTCCATCCAGACCCTTTCCTTTTCTTTTGATATAATACTGCATGTAATCTTTTATATTTTGTTGGCTTGGTTTAAAATTGATTACTTAATTGTACTATACTTCTACCAAGAATAACATCCAAACTAGTCTCTTTTTGTTTATTTCGGTATAGAACTGCATTCAATTCTTTTCCTGTATATCTGAGAACATCTTATTTTTAC</gDNA_template>
            <first_frame> L  F  I  F  *  A  *  Y  I  V  E  F  R  A  L  T  K  N  F  T  S  L  A  M  K  K  E  R  R  E  C  R  P  C  N  F  L  V  M  I  M  V  L  P  L  C  N  G  C  V  *  H  H  K  W  N  C  S  S  K  F  L  K  F  H  S  R  R  M  S  I  F  S  A  S  V  S  P  S  S  F  S  *  I  L  *  C  L  A  V  S  L  A  A  G  C  I  C  M  L  I  L  L  I  K  T  L  F  M  S  I  F  E  A  K  P  F  V  S  D  F  L  F  *  N  *  I  V  F  S  F  C  H  D  *  L  L  N  L  F  F  F  R  L  S  S  S  L  H  P  D  P  F  L  F  F  *  Y  N  T  A  C  N  L  L  Y  F  V  G  L  V  *  N  *  L  L  N  C  T  I  L  L  P  R  I  T  S  K  L  V  S  F  C  L  F  R  Y  R  T  A  F  N  S  F  P  V  Y  L  R  T  S  Y  F  Y </first_frame>
            <second_frame>  Y  S  S  F  K  H  S  T  S  L  N  S  G  R  *  L  K  I  S  L  P  W  Q  *  K  K  R  E  E  N  A  G  H  V  T  S  *  *  *  L  W  C  C  L  Y  A  M  D  V  F  D  I  I  N  G  I  A  H  Q  S  F  S  S  S  I  L  E  E  C  Q  F  F  L  L  Q  Y  L  Q  V  H  S  L  K  F  F  S  V  *  L  S  H  *  L  Q  G  V  F  V  C  S  F  Y  *  L  R  H  S  L  *  A  F  L  R  Q  N  L  L  F  L  T  S  C  F  K  I  E  L  Y  S  P  S  V  M  T  S  Y  S  I  S  S  F  F  A  Y  P  V  V  S  I  Q  T  L  S  F  S  F  D  I  I  L  H  V  I  F  Y  I  L  L  A  W  F  K  I  D  Y  L  I  V  L  Y  F  Y  Q  E  *  H  P  N  *  S  L  F  V  Y  F  G  I  E  L  H  S  I  L  F  L  Y  I  *  E  H  L  I  F   </second_frame>
            <third_frame>   I  H  L  L  S  I  V  H  R  *  I  Q  G  V  D  *  K  F  H  F  P  G  N  E  K  R  E  K  R  M  Q  A  M  *  L  P  S  N  D  Y  G  V  A  S  M  Q  W  M  C  L  T  S  *  M  E  L  L  I  K  V  S  Q  V  P  F  S  K  N  V  N  F  F  C  F  S  I  S  K  F  I  L  L  N  S  L  V  S  S  C  L  T  S  C  R  V  Y  L  Y  A  H  S  I  N  *  D  T  L  Y  E  H  F  *  G  K  T  F  C  F  *  L  L  V  L  K  L  N  C  I  L  L  L  S  *  L  A  T  Q  S  L  L  F  S  L  I  Q  *  S  P  S  R  P  F  P  F  L  L  I  *  Y  C  M  *  S  F  I  F  C  W  L  G  L  K  L  I  T  *  L  Y  Y  T  S  T  K  N  N  I  Q  T  S  L  F  L  F  I  S  V  *  N  C  I  Q  F  F  S  C  I  S  E  N  I  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92152" stop="91925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLRQNLLFLTSCFKIELYSPSVMTSYSISSFFAYPVVSIQTLSFSFDIILHVIFYILLAWFKIDYLIVLYFYQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="93450" PGL_stop="92833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93450" e_stop="92833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="93450" e_stop="92833" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93450" stop="92833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93450" stop="93013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTCCATGATAACTTTTGCATGGCTGGAATCAAGAGGGGCTTAGGAAGAAATCTCTGAAACTTGGAACACCATACCTCAGGTCATTTGGTGGGCTATCTGGCTCGAAACAAACTATATAATCTTAGAAGGCAAAAAGAGTAACATGCACAGCCTTAAACAGAGATGTCTTTCTTTGGTAGCTTTTTGGTGCAATCTAGCTATTGTACTAGATGTATATGGAATGTTAAGACACAATAGAGGTATTCCACAACCTGTAATTATGCCTATTGCACTGGCTTAATGCACAAATTTATTAAAGCTGTAATGACTTATTAAAAAGAAGTTACAAATGTTAAGTAATGTCCGTCTTTTCTTGCGAGTGAGATAATTTCTCGAGGTTCTTTATCTTGCAAGAGTGTATTTGCCTCTGAAAAGGATAACATTTGATCACTACCCATTAAATAAAAAAGGATCACAGTTGGTCATCTGTATCTTTATGAATGTCTTATACTGTTGCTTTTTGATTGTTATTATTTGATCAGTTTGCAATAAGCAGAAAGCAAAGAGGTAGAAGGAATGTGCCTAGCTAACAGAAGAATGTAGGATCATCATGTGACTTGGGAAGTATGGTCTGG</gDNA_template>
            <first_frame> L  I  P  *  *  L  L  H  G  W  N  Q  E  G  L  R  K  K  S  L  K  L  G  T  P  Y  L  R  S  F  G  G  L  S  G  S  K  Q  T  I  *  S  *  K  A  K  R  V  T  C  T  A  L  N  R  D  V  F  L  W  *  L  F  G  A  I  *  L  L  Y  *  M  Y  M  E  C  *  D  T  I  E  V  F  H  N  L  *  L  C  L  L  H  W  L  N  A  Q  I  Y  *  S  C  N  D  L  L  K  R  S  Y  K  C  *  V  M  S  V  F  S  C  E  *  D  N  F  S  R  F  F  I  L  Q  E  C  I  C  L  *  K  G  *  H  L  I  T  T  H  *  I  K  K  D  H  S  W  S  S  V  S  L  *  M  S  Y  T  V  A  F  *  L  L  L  F  D  Q  F  A  I  S  R  K  Q  R  G  R  R  N  V  P  S  *  Q  K  N  V  G  S  S  C  D  L  G  S  M  V  W </first_frame>
            <second_frame>  *  F  H  D  N  F  C  M  A  G  I  K  R  G  L  G  R  N  L  *  N  L  E  H  H  T  S  G  H  L  V  G  Y  L  A  R  N  K  L  Y  N  L  R  R  Q  K  E  *  H  A  Q  P  *  T  E  M  S  F  F  G  S  F  L  V  Q  S  S  Y  C  T  R  C  I  W  N  V  K  T  Q  *  R  Y  S  T  T  C  N  Y  A  Y  C  T  G  L  M  H  K  F  I  K  A  V  M  T  Y  *  K  E  V  T  N  V  K  *  C  P  S  F  L  A  S  E  I  I  S  R  G  S  L  S  C  K  S  V  F  A  S  E  K  D  N  I  *  S  L  P  I  K  *  K  R  I  T  V  G  H  L  Y  L  Y  E  C  L  I  L  L  L  F  D  C  Y  Y  L  I  S  L  Q  *  A  E  S  K  E  V  E  G  M  C  L  A  N  R  R  M  *  D  H  H  V  T  W  E  V  W  S   </second_frame>
            <third_frame>   N  S  M  I  T  F  A  W  L  E  S  R  G  A  *  E  E  I  S  E  T  W  N  T  I  P  Q  V  I  W  W  A  I  W  L  E  T  N  Y  I  I  L  E  G  K  K  S  N  M  H  S  L  K  Q  R  C  L  S  L  V  A  F  W  C  N  L  A  I  V  L  D  V  Y  G  M  L  R  H  N  R  G  I  P  Q  P  V  I  M  P  I  A  L  A  *  C  T  N  L  L  K  L  *  *  L  I  K  K  K  L  Q  M  L  S  N  V  R  L  F  L  R  V  R  *  F  L  E  V  L  Y  L  A  R  V  Y  L  P  L  K  R  I  T  F  D  H  Y  P  L  N  K  K  G  S  Q  L  V  I  C  I  F  M  N  V  L  Y  C  C  F  L  I  V  I  I  *  S  V  C  N  K  Q  K  A  K  R  *  K  E  C  A  *  L  T  E  E  C  R  I  I  M  *  L  G  K  Y  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93403" stop="93167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEISETWNTIPQVIWWAIWLETNYIILEGKKSNMHSLKQRCLSLVAFWCNLAIVLDVYGMLRHNRGIPQPVIMPIALA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="103042" PGL_stop="98640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103042" e_stop="103033"/>
            <exon e_start="102745" e_stop="102599"/>
            <exon e_start="102463" e_stop="102078"/>
            <exon e_start="101794" e_stop="101152"/>
            <exon e_start="98741" e_stop="98640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103042" e_stop="103033" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.992">
            <gDNA_intron_boundary i_start="103032" i_stop="102746" i_length="287"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="102745" e_stop="102599" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="102598" i_stop="102464" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="102463" e_stop="102078" e_length="386"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102077" i_stop="101795" i_length="283"/>
          </intron>
          <exon e_serial="4" e_score="0.936">
            <gDNA_exon_boundary e_start="101794" e_stop="101152" e_length="643"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101151" i_stop="98742" i_length="2410"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98741" e_stop="98640" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103042" stop="103033"/>
              <exon start="102745" stop="102599"/>
              <exon start="102463" stop="102078"/>
              <exon start="101794" stop="101567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103042" stop="103033"/>
              <exon start="102745" stop="102599"/>
              <exon start="102463" stop="102078"/>
              <exon start="101794" stop="101685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102697" stop="102599"/>
              <exon start="102463" stop="102078"/>
              <exon start="101794" stop="101644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102674" stop="102599"/>
              <exon start="102463" stop="102078"/>
              <exon start="101794" stop="101493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102374" stop="102078"/>
              <exon start="101794" stop="101624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102362" stop="102078"/>
              <exon start="101794" stop="101492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101684" stop="101183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101531" stop="101152"/>
              <exon start="98741" stop="98640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433972" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGCACAG : GTGGAAACTCTTACACGCAAGGCTCAACTTCAAGAGGTAGAACTGGAAAGAACTAGTAAGCAACTGAAGGAGGCAATATCAATTGCGGGGGAGGAGACAGCCAAATGCAAAGCAGCAAAAGAAGTGATCAAGTCACTTACTTCTCAG : CTGAAGGAAATGGCTGAAAGGCTGCAAGTAGGTCCTGGCCGAAACGTCAAATCTCCTAAATCAGTTTCCTCCGAATCCAATATTACCTCCAGTGATATACCTAATGGCTGTATTGACCAAGTTCACAGTCAGCTTACTTTTCAAGAGTTGGAAACATGTGTATTTAACAGCCATTTGCTTTCTAATGGATCAAGCAATGCCAGTAATCGCAGTGCTGTTCACAATAGACAAGGGAATCCAGAGGCAACAACAAAAAATGGGGGCAGAACAAAAGAATGTGATTCTCGTAACGAGAATGAATGGGTTGAGCAAGATGAGCCAGGTGTATATATTACTCTTACCTCCCTACCTGGAGGCGTCAAAGATCTTAAAAGGGTTCGCTTCAG : TCGGAAGCGGTTTAGCGAAAAACAAGCAGAAAAATGGTGGGCAGAGAACCGTGCAAGAGTTTATGAGCTGTACAACGTACGCGTAGTCGACAAGGCAAGCATTGGCACTGCAAGTGTGGATTTAGCACATTGAGACATGCAAATTACCATTTGTACATGAGTTTTCCTTTTTCCTTTTTGGTCCTAACTCAAGTTCACGCCACACAGTGATTCACATTATGTTGATCATATAGGTTTAGTGTTTACAAATTTGTAGGGAGGAATCAAGGGTTGGCATAGAAGTGCTAGGAATGAAATGCTTGCTTGTAAGAGTTTGCTAGTTTTTTTCTTTCCCTGAGGACCAGACCAGTAGCGCACAGTTTGAAACTCGGTGGATAATAGTCTTGCTCTTTACCTACTTACATACCTGGCTTTTGTTGGTGGCTGCACCCACACATCATGCGCTACGCTCTTACCCTTGGACCAAAGCCTTGTGGGCTTTCTATTATTCCAATGGCTTGACCACTATTTGTTTTTCCCCTTCCTAATTGCTGAGTGGGGGAATAGAGATGTAGTTTTAGTAGATTGCTTGCCCTTGTTGGGAGATACTTCCTTGTAAATTTTTCCCAATTTAATGCATATTTGGATTTCAAATCCATACTAT : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> K  S  T   : G  G  N  S  Y  T  Q  G  S  T  S  R  G  R  T  G  K  N  *  *  A  T  E  G  G  N  I  N  C  G  G  G  D  S  Q  M  Q  S  S  K  R  S  D  Q  V  T  Y  F  S   : A  E  G  N  G  *  K  A  A  S  R  S  W  P  K  R  Q  I  S  *  I  S  F  L  R  I  Q  Y  Y  L  Q  *  Y  T  *  W  L  Y  *  P  S  S  Q  S  A  Y  F  S  R  V  G  N  M  C  I  *  Q  P  F  A  F  *  W  I  K  Q  C  Q  *  S  Q  C  C  S  Q  *  T  R  E  S  R  G  N  N  K  K  W  G  Q  N  K  R  M  *  F  S  *  R  E  *  M  G  *  A  R  *  A  R  C  I  Y  Y  S  Y  L  P  T  W  R  R  Q  R  S  *  K  G  S  L  Q  :  S  E  A  V  *  R  K  T  S  R  K  M  V  G  R  E  P  C  K  S  L  *  A  V  Q  R  T  R  S  R  Q  G  K  H  W  H  C  K  C  G  F  S  T  L  R  H  A  N  Y  H  L  Y  M  S  F  P  F  S  F  L  V  L  T  Q  V  H  A  T  Q  *  F  T  L  C  *  S  Y  R  F  S  V  Y  K  F  V  G  R  N  Q  G  L  A  *  K  C  *  E  *  N  A  C  L  *  E  F  A  S  F  F  L  S  L  R  T  R  P  V  A  H  S  L  K  L  G  G  *  *  S  C  S  L  P  T  Y  I  P  G  F  C  W  W  L  H  P  H  I  M  R  Y  A  L  T  L  G  P  K  P  C  G  L  S  I  I  P  M  A  *  P  L  F  V  F  P  L  P  N  C  *  V  G  E  *  R  C  S  F  S  R  L  L  A  L  V  G  R  Y  F  L  V  N  F  S  Q  F  N  A  Y  L  D  F  K  S  I  L   : S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  R  A  Q  :  V  E  T  L  T  R  K  A  Q  L  Q  E  V  E  L  E  R  T  S  K  Q  L  K  E  A  I  S  I  A  G  E  E  T  A  K  C  K  A  A  K  E  V  I  K  S  L  T  S  Q  :  L  K  E  M  A  E  R  L  Q  V  G  P  G  R  N  V  K  S  P  K  S  V  S  S  E  S  N  I  T  S  S  D  I  P  N  G  C  I  D  Q  V  H  S  Q  L  T  F  Q  E  L  E  T  C  V  F  N  S  H  L  L  S  N  G  S  S  N  A  S  N  R  S  A  V  H  N  R  Q  G  N  P  E  A  T  T  K  N  G  G  R  T  K  E  C  D  S  R  N  E  N  E  W  V  E  Q  D  E  P  G  V  Y  I  T  L  T  S  L  P  G  G  V  K  D  L  K  R  V  R  F  S :   R  K  R  F  S  E  K  Q  A  E  K  W  W  A  E  N  R  A  R  V  Y  E  L  Y  N  V  R  V  V  D  K  A  S  I  G  T  A  S  V  D  L  A  H  *  D  M  Q  I  T  I  C  T  *  V  F  L  F  P  F  W  S  *  L  K  F  T  P  H  S  D  S  H  Y  V  D  H  I  G  L  V  F  T  N  L  *  G  G  I  K  G  W  H  R  S  A  R  N  E  M  L  A  C  K  S  L  L  V  F  F  F  P  *  G  P  D  Q  *  R  T  V  *  N  S  V  D  N  S  L  A  L  Y  L  L  T  Y  L  A  F  V  G  G  C  T  H  T  S  C  A  T  L  L  P  L  D  Q  S  L  V  G  F  L  L  F  Q  W  L  D  H  Y  L  F  F  P  F  L  I  A  E  W  G  N  R  D  V  V  L  V  D  C  L  P  L  L  G  D  T  S  L  *  I  F  P  N  L  M  H  I  W  I  S  N  P  Y  Y  :  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   E  H  R :   W  K  L  L  H  A  R  L  N  F  K  R  *  N  W  K  E  L  V  S  N  *  R  R  Q  Y  Q  L  R  G  R  R  Q  P  N  A  K  Q  Q  K  K  *  S  S  H  L  L  L  S :   *  R  K  W  L  K  G  C  K  *  V  L  A  E  T  S  N  L  L  N  Q  F  P  P  N  P  I  L  P  P  V  I  Y  L  M  A  V  L  T  K  F  T  V  S  L  L  F  K  S  W  K  H  V  Y  L  T  A  I  C  F  L  M  D  Q  A  M  P  V  I  A  V  L  F  T  I  D  K  G  I  Q  R  Q  Q  Q  K  M  G  A  E  Q  K  N  V  I  L  V  T  R  M  N  G  L  S  K  M  S  Q  V  Y  I  L  L  L  P  P  Y  L  E  A  S  K  I  L  K  G  F  A  S   : V  G  S  G  L  A  K  N  K  Q  K  N  G  G  Q  R  T  V  Q  E  F  M  S  C  T  T  Y  A  *  S  T  R  Q  A  L  A  L  Q  V  W  I  *  H  I  E  T  C  K  L  P  F  V  H  E  F  S  F  F  L  F  G  P  N  S  S  S  R  H  T  V  I  H  I  M  L  I  I  *  V  *  C  L  Q  I  C  R  E  E  S  R  V  G  I  E  V  L  G  M  K  C  L  L  V  R  V  C  *  F  F  S  F  P  E  D  Q  T  S  S  A  Q  F  E  T  R  W  I  I  V  L  L  F  T  Y  L  H  T  W  L  L  L  V  A  A  P  T  H  H  A  L  R  S  Y  P  W  T  K  A  L  W  A  F  Y  Y  S  N  G  L  T  T  I  C  F  S  P  S  *  L  L  S  G  G  I  E  M  *  F  *  *  I  A  C  P  C  W  E  I  L  P  C  K  F  F  P  I  *  C  I  F  G  F  Q  I  H  T  I :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103041" stop="103033"/>
                    <exon start="102745" stop="102599"/>
                    <exon start="102463" stop="102078"/>
                    <exon start="101794" stop="101662"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAQVETLTRKAQLQEVELERTSKQLKEAISIAGEETAKCKAAKEVIKSLTSQLKEMAERLQVGPGRNVKSPKSVSSESNITSSDIPNGCIDQVHSQLTFQELETCVFNSHLLSNGSSNASNRSAVHNRQGNPEATTKNGGRTKECDSRNENEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEKWWAENRARVYELYNVRVVDKASIGTASVDLAH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101430" stop="101197"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVDNSLALYLLTYLAFVGGCTHTSCATLLPLDQSLVGFLLFQWLDHYLFFPFLIAEWGNRDVVLVDCLPLLGDTSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="98666" PGL_stop="101531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98666" e_stop="98741"/>
            <exon e_start="101152" e_stop="101531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98666" e_stop="98741" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98742" i_stop="101151" i_length="2410"/>
          </intron>
          <exon e_serial="2" e_score="0.937">
            <gDNA_exon_boundary e_start="101152" e_stop="101531" e_length="380"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98666" stop="98741"/>
              <exon start="101152" stop="101531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433971" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG : ATAGTATGGATTTGAAATCCAAATATGCATTAAATTGGGAAAAATTTACAAGGAAGTATCTCCCAACAAGGGCAAGCAATCTACTAAAACTACATCTCTATTCCCCCACTCAGCAATTAGGAAGGGGAAAAACAAATAGTGGTCAAGCCATTGGAATAATAGAAAGCCCACAAGGCTTTGGTCCAAGGGTAAGAGCGTAGCGCATGATGTGTGGGTGCAGCCACCAACAAAAGCCAGGTATGTAAGTAGGTAAAGAGCAAGACTATTATCCACCGAGTTTCAAACTGTGCGCTACTGGTCTGGTCCTCAGGGAAAGAAAAAAACTAGCAAACTCTTACAAGCAAGCATTTCATTCCTAGCACTTCTATGCCAACCCTTGA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L   : D  S  M  D  L  K  S  K  Y  A  L  N  W  E  K  F  T  R  K  Y  L  P  T  R  A  S  N  L  L  K  L  H  L  Y  S  P  T  Q  Q  L  G  R  G  K  T  N  S  G  Q  A  I  G  I  I  E  S  P  Q  G  F  G  P  R  V  R  A  *  R  M  M  C  G  C  S  H  Q  Q  K  P  G  M  *  V  G  K  E  Q  D  Y  Y  P  P  S  F  K  L  C  A  T  G  L  V  L  R  E  R  K  K  L  A  N  S  Y  K  Q  A  F  H  S  *  H  F  Y  A  N  P  * </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  :  I  V  W  I  *  N  P  N  M  H  *  I  G  K  N  L  Q  G  S  I  S  Q  Q  G  Q  A  I  Y  *  N  Y  I  S  I  P  P  L  S  N  *  E  G  E  K  Q  I  V  V  K  P  L  E  *  *  K  A  H  K  A  L  V  Q  G  *  E  R  S  A  *  C  V  G  A  A  T  N  K  S  Q  V  C  K  *  V  K  S  K  T  I  I  H  R  V  S  N  C  A  L  L  V  W  S  S  G  K  E  K  N  *  Q  T  L  T  S  K  H  F  I  P  S  T  S  M  P  T  L   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R :   *  Y  G  F  E  I  Q  I  C  I  K  L  G  K  I  Y  K  E  V  S  P  N  K  G  K  Q  S  T  K  T  T  S  L  F  P  H  S  A  I  R  K  G  K  N  K  *  W  S  S  H  W  N  N  R  K  P  T  R  L  W  S  K  G  K  S  V  A  H  D  V  W  V  Q  P  P  T  K  A  R  Y  V  S  R  *  R  A  R  L  L  S  T  E  F  Q  T  V  R  Y  W  S  G  P  Q  G  K  K  K  T  S  K  L  L  Q  A  S  I  S  F  L  A  L  L  C  Q  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98666" stop="98741"/>
                    <exon start="101152" stop="101351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFLDSMDLKSKYALNWEKFTRKYLPTRASNLLKLHLYSPTQQLGRGKTNSGQAIGIIESPQGFGPRVRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="104241" PGL_stop="103613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104241" e_stop="103613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="104241" e_stop="103613" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104241" stop="103765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104138" stop="103613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTTGAAGTCATGGTGGGGAACTCTAGTTCAAGCAATTGTTCTTCAGGGAAACTTTTTACTTGGGGAGATGGGGATAAAGGTCGACTTGGGCATGGTGACAAGGAGTCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAATTTTTGCCAGGTTACTTGTGGACATAGCTTGACAGTTGCTTTAACCACTTCAGGTCATGTATATACAATGGGAAGTCCTGTATATGGTCAATTAGGTCATCCTCAAGCTGATGGGAAGCTTCCTTGTCATGTTGAAGGAAAACTCTCAAAGAGCTTTGTGGAGGAGATAGCATGTGGTGCTTACCATGTTGCTGTATTGACTTCCCGAACTGAAGTTTACACATGGGGGAAGGGAGCAAATGGAAGATTAGGTCATGGTACTACTGATGACAGAAATTCTCCCACCTTAGTGGAAGCTTTGAAAGACAAGCAAGTCAAAAGTATTGCTTGTGGTACTAATTTTACGGCAGCTATTTGCCTTCATAAATGGGCGTCAGGGGTTGACCAATCCATGTGTTCTGGCTGCCGTCTTCCTTTTAATTTCAAAAGGAAGCGCCACAACTGTTATAACTGTGGTCTTGTCTTTTGTCATTCATG</gDNA_template>
            <first_frame> V  V  E  V  M  V  G  N  S  S  S  S  N  C  S  S  G  K  L  F  T  W  G  D  G  D  K  G  R  L  G  H  G  D  K  E  S  K  L  V  P  T  C  V  A  A  L  V  E  P  N  F  C  Q  V  T  C  G  H  S  L  T  V  A  L  T  T  S  G  H  V  Y  T  M  G  S  P  V  Y  G  Q  L  G  H  P  Q  A  D  G  K  L  P  C  H  V  E  G  K  L  S  K  S  F  V  E  E  I  A  C  G  A  Y  H  V  A  V  L  T  S  R  T  E  V  Y  T  W  G  K  G  A  N  G  R  L  G  H  G  T  T  D  D  R  N  S  P  T  L  V  E  A  L  K  D  K  Q  V  K  S  I  A  C  G  T  N  F  T  A  A  I  C  L  H  K  W  A  S  G  V  D  Q  S  M  C  S  G  C  R  L  P  F  N  F  K  R  K  R  H  N  C  Y  N  C  G  L  V  F  C  H  S   </first_frame>
            <second_frame>  L  L  K  S  W  W  G  T  L  V  Q  A  I  V  L  Q  G  N  F  L  L  G  E  M  G  I  K  V  D  L  G  M  V  T  R  S  Q  N  L  F  L  L  V  L  Q  L  L  L  N  P  I  F  A  R  L  L  V  D  I  A  *  Q  L  L  *  P  L  Q  V  M  Y  I  Q  W  E  V  L  Y  M  V  N  *  V  I  L  K  L  M  G  S  F  L  V  M  L  K  E  N  S  Q  R  A  L  W  R  R  *  H  V  V  L  T  M  L  L  Y  *  L  P  E  L  K  F  T  H  G  G  R  E  Q  M  E  D  *  V  M  V  L  L  M  T  E  I  L  P  P  *  W  K  L  *  K  T  S  K  S  K  V  L  L  V  V  L  I  L  R  Q  L  F  A  F  I  N  G  R  Q  G  L  T  N  P  C  V  L  A  A  V  F  L  L  I  S  K  G  S  A  T  T  V  I  T  V  V  L  S  F  V  I  H  </second_frame>
            <third_frame>   C  *  S  H  G  G  E  L  *  F  K  Q  L  F  F  R  E  T  F  Y  L  G  R  W  G  *  R  S  T  W  A  W  *  Q  G  V  K  T  C  S  Y  L  C  C  S  S  C  *  T  Q  F  L  P  G  Y  L  W  T  *  L  D  S  C  F  N  H  F  R  S  C  I  Y  N  G  K  S  C  I  W  S  I  R  S  S  S  S  *  W  E  A  S  L  S  C  *  R  K  T  L  K  E  L  C  G  G  D  S  M  W  C  L  P  C  C  C  I  D  F  P  N  *  S  L  H  M  G  E  G  S  K  W  K  I  R  S  W  Y  Y  *  *  Q  K  F  S  H  L  S  G  S  F  E  R  Q  A  S  Q  K  Y  C  L  W  Y  *  F  Y  G  S  Y  L  P  S  *  M  G  V  R  G  *  P  I  H  V  F  W  L  P  S  S  F  *  F  Q  K  E  A  P  Q  L  L  *  L  W  S  C  L  L  S  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104241" stop="103615"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVAALVEPNFCQVTCGHSLTVALTTSGHVYTMGSPVYGQLGHPQADGKLPCHVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGTTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="111293" PGL_stop="104892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111293" e_stop="111246"/>
            <exon e_start="105701" e_stop="105621"/>
            <exon e_start="105482" e_stop="105288"/>
            <exon e_start="105165" e_stop="104892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.457" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111293" e_stop="111246" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.949">
            <gDNA_intron_boundary i_start="111245" i_stop="105702" i_length="5544"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105701" e_stop="105621" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.457" acc_prob="0.892">
            <gDNA_intron_boundary i_start="105620" i_stop="105483" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105482" e_stop="105288" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105287" i_stop="105166" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105165" e_stop="104892" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111293" stop="111246"/>
              <exon start="105701" stop="105621"/>
              <exon start="105482" stop="105288"/>
              <exon start="105165" stop="104892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCTTAAGCTGAGTCATGTGTCAAGAATAATATCTGGACAGCGCACT : CCAATATTTCAAAGGCATCCACGACCTGAGAAAGAGTACCAATCTTTTTCTCTCATATATAATGATAGATCACTGGATTTG : ATATGCAAAGATAAAGAGGAAGCAGAGGTATGGTTTAGTGGCTTGAAGGCTTTAATTTCACGAGGGCACCAGCGAAAGTGGAGAACAGACTCAAGGAGCGATGGAATTCCTTCTGGTGCCACTAGTCCCAGAACATATACGCGGAGAAGCTCTCCTCTGCATTCTCCTTTTGGTAGTGGTGATAGCTCACAGAAG : GATGGTGGTGACCAACTTCGCCTTCATAGTCCATATGGAAGCCCACCTAAAACTGGTGTAAATAAGGCCTTTTCTGATGTTATTTTATATGCTGTACCTCCCAAGGGCTTTTTCCCTTCAGATTCTGCTAGTGCTTCAATTCATTCTTTATCTTCTGGAGGTTCAAATGACATACATGGTCAGATGAAGGCAATGGGTATGGATAATTTTAGAGTAAGCCTTTCAAGTGCTGTTAGCTCATCAAGTCAAGGGTCTGGTCACGATGATGGTGATG</gDNA_template>
            <first_frame> H  L  K  L  S  H  V  S  R  I  I  S  G  Q  R  T  :  P  I  F  Q  R  H  P  R  P  E  K  E  Y  Q  S  F  S  L  I  Y  N  D  R  S  L  D  L  :  I  C  K  D  K  E  E  A  E  V  W  F  S  G  L  K  A  L  I  S  R  G  H  Q  R  K  W  R  T  D  S  R  S  D  G  I  P  S  G  A  T  S  P  R  T  Y  T  R  R  S  S  P  L  H  S  P  F  G  S  G  D  S  S  Q  K  :  D  G  G  D  Q  L  R  L  H  S  P  Y  G  S  P  P  K  T  G  V  N  K  A  F  S  D  V  I  L  Y  A  V  P  P  K  G  F  F  P  S  D  S  A  S  A  S  I  H  S  L  S  S  G  G  S  N  D  I  H  G  Q  M  K  A  M  G  M  D  N  F  R  V  S  L  S  S  A  V  S  S  S  S  Q  G  S  G  H  D  D  G  D  </first_frame>
            <second_frame>  T  L  S  *  V  M  C  Q  E  *  Y  L  D  S  A  L :   Q  Y  F  K  G  I  H  D  L  R  K  S  T  N  L  F  L  S  Y  I  M  I  D  H  W  I  * :   Y  A  K  I  K  R  K  Q  R  Y  G  L  V  A  *  R  L  *  F  H  E  G  T  S  E  S  G  E  Q  T  Q  G  A  M  E  F  L  L  V  P  L  V  P  E  H  I  R  G  E  A  L  L  C  I  L  L  L  V  V  V  I  A  H  R  R :   M  V  V  T  N  F  A  F  I  V  H  M  E  A  H  L  K  L  V  *  I  R  P  F  L  M  L  F  Y  M  L  Y  L  P  R  A  F  S  L  Q  I  L  L  V  L  Q  F  I  L  Y  L  L  E  V  Q  M  T  Y  M  V  R  *  R  Q  W  V  W  I  I  L  E  *  A  F  Q  V  L  L  A  H  Q  V  K  G  L  V  T  M  M  V  M </second_frame>
            <third_frame>   P  *  A  E  S  C  V  K  N  N  I  W  T  A  H   : S  N  I  S  K  A  S  T  T  *  E  R  V  P  I  F  F  S  H  I  *  *  *  I  T  G  F   : D  M  Q  R  *  R  G  S  R  G  M  V  *  W  L  E  G  F  N  F  T  R  A  P  A  K  V  E  N  R  L  K  E  R  W  N  S  F  W  C  H  *  S  Q  N  I  Y  A  E  K  L  S  S  A  F  S  F  W  *  W  *  *  L  T  E   : G  W  W  *  P  T  S  P  S  *  S  I  W  K  P  T  *  N  W  C  K  *  G  L  F  *  C  Y  F  I  C  C  T  S  Q  G  L  F  P  F  R  F  C  *  C  F  N  S  F  F  I  F  W  R  F  K  *  H  T  W  S  D  E  G  N  G  Y  G  *  F  *  S  K  P  F  K  C  C  *  L  I  K  S  R  V  W  S  R  *  W  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111293" stop="111246"/>
                    <exon start="105701" stop="105621"/>
                    <exon start="105482" stop="105288"/>
                    <exon start="105165" stop="104893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLKLSHVSRIISGQRTPIFQRHPRPEKEYQSFSLIYNDRSLDLICKDKEEAEVWFSGLKALISRGHQRKWRTDSRSDGIPSGATSPRTYTRRSSPLHSPFGSGDSSQKDGGDQLRLHSPYGSPPKTGVNKAFSDVILYAVPPKGFFPSDSASASIHSLSSGGSNDIHGQMKAMGMDNFRVSLSSAVSSSSQGSGHDDGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="116068" PGL_stop="119383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116068" e_stop="116179"/>
            <exon e_start="118092" e_stop="118129"/>
            <exon e_start="119043" e_stop="119383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116068" e_stop="116179" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="116180" i_stop="118091" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="118092" e_stop="118129" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="118130" i_stop="119042" i_length="913"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="119043" e_stop="119383" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116068" stop="116179"/>
              <exon start="118092" stop="118129"/>
              <exon start="119043" stop="119383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119098" stop="119373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119099" stop="119373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308497" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTGAAGAGAGAGAAAAAGGAGAGAGAGAGAGAGAGAAATGGCGAGAGATAGCTGCTTGGCGCGTGTGACGGCTGGGGTGGCCGTCGGTGGTGCAATTGGTGGCGCTGTTG : GTGCTGTTTATGGGACATATGAGGCTGTTAGATACAAG : GTTCCCGGCTTAATGAAAATTCGATACATTGGCCAAACTACTCTGGGAAGTGCTGCCATTTTTGGTCTCTTTTTGGGAGCTGGAAGCTTGATACACTGTGGAAAGTCATACTGAGGATCTCTTTACTCTTTTTGTCTCAAAGAGTATAGAACAATATCATCAACATTATCAGAAGCATGCTTCGTGTTCTTCCAATTTGCTTTTCATTCTGTAATTTTCCGGTTCAAACCGAGTTTTCTCTTAGCTTTTACCTCCATTTAATGGTGGAGCCTTACCCGTTGTGAATCTTGATTAGTCGAGCTAGTGGATTTCAGAGACCGGATGGGTTAAACGAAAAAGAA</gDNA_template>
            <first_frame> H  *  R  E  R  K  R  R  E  R  E  R  E  M  A  R  D  S  C  L  A  R  V  T  A  G  V  A  V  G  G  A  I  G  G  A  V   : G  A  V  Y  G  T  Y  E  A  V  R  Y  K  :  V  P  G  L  M  K  I  R  Y  I  G  Q  T  T  L  G  S  A  A  I  F  G  L  F  L  G  A  G  S  L  I  H  C  G  K  S  Y  *  G  S  L  Y  S  F  C  L  K  E  Y  R  T  I  S  S  T  L  S  E  A  C  F  V  F  F  Q  F  A  F  H  S  V  I  F  R  F  K  P  S  F  L  L  A  F  T  S  I  *  W  W  S  L  T  R  C  E  S  *  L  V  E  L  V  D  F  R  D  R  M  G  *  T  K  K   </first_frame>
            <second_frame>  I  E  E  R  E  K  G  E  R  E  R  E  K  W  R  E  I  A  A  W  R  V  *  R  L  G  W  P  S  V  V  Q  L  V  A  L  L  :  V  L  F  M  G  H  M  R  L  L  D  T  R :   F  P  A  *  *  K  F  D  T  L  A  K  L  L  W  E  V  L  P  F  L  V  S  F  W  E  L  E  A  *  Y  T  V  E  S  H  T  E  D  L  F  T  L  F  V  S  K  S  I  E  Q  Y  H  Q  H  Y  Q  K  H  A  S  C  S  S  N  L  L  F  I  L  *  F  S  G  S  N  R  V  F  S  *  L  L  P  P  F  N  G  G  A  L  P  V  V  N  L  D  *  S  S  *  W  I  S  E  T  G  W  V  K  R  K  R  </second_frame>
            <third_frame>   L  K  R  E  K  K  E  R  E  R  E  R  N  G  E  R  *  L  L  G  A  C  D  G  W  G  G  R  R  W  C  N  W  W  R  C  W :   C  C  L  W  D  I  *  G  C  *  I  Q   : G  S  R  L  N  E  N  S  I  H  W  P  N  Y  S  G  K  C  C  H  F  W  S  L  F  G  S  W  K  L  D  T  L  W  K  V  I  L  R  I  S  L  L  F  L  S  Q  R  V  *  N  N  I  I  N  I  I  R  S  M  L  R  V  L  P  I  C  F  S  F  C  N  F  P  V  Q  T  E  F  S  L  S  F  Y  L  H  L  M  V  E  P  Y  P  L  *  I  L  I  S  R  A  S  G  F  Q  R  P  D  G  L  N  E  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116074" stop="116179"/>
                    <exon start="118092" stop="118129"/>
                    <exon start="119043" stop="119156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RERKRREREREMARDSCLARVTAGVAVGGAIGGAVGAVYGTYEAVRYKVPGLMKIRYIGQTTLGSAAIFGLFLGAGSLIHCGKSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="125407" PGL_stop="124089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125407" e_stop="125042"/>
            <exon e_start="124312" e_stop="124209"/>
            <exon e_start="124137" e_stop="124089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.891"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.942"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="125407" e_stop="125042" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="125041" i_stop="124313" i_length="729"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="124312" e_stop="124209" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124208" i_stop="124138" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="0.939">
            <gDNA_exon_boundary e_start="124137" e_stop="124089" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125407" stop="125042"/>
              <exon start="124312" stop="124209"/>
              <exon start="124137" stop="124089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420128" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125149" stop="125042"/>
              <exon start="124312" stop="124209"/>
              <exon start="124137" stop="124089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431955" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125149" stop="125042"/>
              <exon start="124312" stop="124209"/>
              <exon start="124137" stop="124089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125149" stop="125042"/>
              <exon start="124312" stop="124209"/>
              <exon start="124137" stop="124089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATATGTCACCATAGGCTTAGCAATTGGACATTTTCAGTATCATGGGGATATTCGATTCATATTTATGAGAAGATTATGCCAAGGAGTCATTTAATTAAACCTATTCAAACATTTAATACTTGGAGTAAACCTCAAAATCCTCCATTTTACATGTTTAATACGAGATCAAACGTAAATGATTCTTGTGAAACTCCTCATATTTTTTACTTGAAATCTATTGGAGGAGCGAATAAAAATGGAATTATGGCCACGTATTCGCGATCGGTGGTGCGGAAGTTGCAAGGTTGTCCGATCAACGGCAACCATCCGGCAAATTATGTCAACAAGATTCAAGTCTACTCTCCTAGAAAAAAACGTGCAGAG : ATGGATCGATGTGAGTGTTGTGATATTATTCACACAACTGGTTCAAAGAAGGCAATAGTCCAATTGAGGGAATGCTTTACCAATGAGAAAATTGCTTAGTTAAA : TATAATATTATGCAAATTCTAGCCAAAAAGAAATATAGAAAAATTTTTT</gDNA_template>
            <first_frame> I  I  C  H  H  R  L  S  N  W  T  F  S  V  S  W  G  Y  S  I  H  I  Y  E  K  I  M  P  R  S  H  L  I  K  P  I  Q  T  F  N  T  W  S  K  P  Q  N  P  P  F  Y  M  F  N  T  R  S  N  V  N  D  S  C  E  T  P  H  I  F  Y  L  K  S  I  G  G  A  N  K  N  G  I  M  A  T  Y  S  R  S  V  V  R  K  L  Q  G  C  P  I  N  G  N  H  P  A  N  Y  V  N  K  I  Q  V  Y  S  P  R  K  K  R  A  E  :  M  D  R  C  E  C  C  D  I  I  H  T  T  G  S  K  K  A  I  V  Q  L  R  E  C  F  T  N  E  K  I  A  *  L  N :   I  I  L  C  K  F  *  P  K  R  N  I  E  K  F  F </first_frame>
            <second_frame>  *  Y  V  T  I  G  L  A  I  G  H  F  Q  Y  H  G  D  I  R  F  I  F  M  R  R  L  C  Q  G  V  I  *  L  N  L  F  K  H  L  I  L  G  V  N  L  K  I  L  H  F  T  C  L  I  R  D  Q  T  *  M  I  L  V  K  L  L  I  F  F  T  *  N  L  L  E  E  R  I  K  M  E  L  W  P  R  I  R  D  R  W  C  G  S  C  K  V  V  R  S  T  A  T  I  R  Q  I  M  S  T  R  F  K  S  T  L  L  E  K  N  V  Q  R :   W  I  D  V  S  V  V  I  L  F  T  Q  L  V  Q  R  R  Q  *  S  N  *  G  N  A  L  P  M  R  K  L  L  S  *   : I  *  Y  Y  A  N  S  S  Q  K  E  I  *  K  N  F   </second_frame>
            <third_frame>   N  M  S  P  *  A  *  Q  L  D  I  F  S  I  M  G  I  F  D  S  Y  L  *  E  D  Y  A  K  E  S  F  N  *  T  Y  S  N  I  *  Y  L  E  *  T  S  K  S  S  I  L  H  V  *  Y  E  I  K  R  K  *  F  L  *  N  S  S  Y  F  L  L  E  I  Y  W  R  S  E  *  K  W  N  Y  G  H  V  F  A  I  G  G  A  E  V  A  R  L  S  D  Q  R  Q  P  S  G  K  L  C  Q  Q  D  S  S  L  L  S  *  K  K  T  C  R   : D  G  S  M  *  V  L  *  Y  Y  S  H  N  W  F  K  E  G  N  S  P  I  E  G  M  L  Y  Q  *  E  N  C  L  V  K  :  Y  N  I  M  Q  I  L  A  K  K  K  Y  R  K  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125407" stop="125042"/>
                    <exon start="124312" stop="124214"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IICHHRLSNWTFSVSWGYSIHIYEKIMPRSHLIKPIQTFNTWSKPQNPPFYMFNTRSNVNDSCETPHIFYLKSIGGANKNGIMATYSRSVVRKLQGCPINGNHPANYVNKIQVYSPRKKRAEMDRCECCDIIHTTGSKKAIVQLRECFTNEKIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="133287" PGL_stop="125910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133226" e_stop="132979"/>
            <exon e_start="132112" e_stop="132005"/>
            <exon e_start="131909" e_stop="131262"/>
            <exon e_start="130200" e_stop="130121"/>
            <exon e_start="129550" e_stop="129089"/>
            <exon e_start="129010" e_stop="128927"/>
            <exon e_start="128830" e_stop="128730"/>
            <exon e_start="128159" e_stop="127911"/>
            <exon e_start="126646" e_stop="125910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.933" e_score="0.935"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="0.924"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="133226" e_stop="132979" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.933">
            <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="132112" e_stop="132005" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131909" e_stop="131262" e_length="648"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130200" e_stop="130121" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.981">
            <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="129550" e_stop="129089" e_length="462"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129010" e_stop="128927" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="128830" e_stop="128730" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570"/>
          </intron>
          <exon e_serial="8" e_score="0.932">
            <gDNA_exon_boundary e_start="128159" e_stop="127911" e_length="249"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="127910" i_stop="126647" i_length="1264"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="126646" e_stop="125910" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133226" stop="132979"/>
              <exon start="132112" stop="132005"/>
              <exon start="131909" stop="131573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133226" stop="132979"/>
              <exon start="132112" stop="132021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132070" stop="132005"/>
              <exon start="131909" stop="131441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132055" stop="132005"/>
              <exon start="131909" stop="131262"/>
              <exon start="130200" stop="130121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131900" stop="131348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131413" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129550" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="127911"/>
              <exon start="126646" stop="126618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126622" stop="125910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126622" stop="126121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAG : ATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG : AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG : ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA : GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG : GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG : GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG : TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAGAAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAA : AAAAAAAATAAAATCTAACACACAAAAAAGTTGTCATTTTTCTTCAAGAAAAAAAAAATGTTACTTCTTTTTATTGATTCATTGAGAGAGAAGTTTAGTTCAATATTTGACAAGTATTTTGTTGCTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTAGCCTCAATTTTTCTTTTTAAAGATCCAAATTGTCCAACTACTACACCTCATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATATTTGGTTTACTTGGATCTGAAAAAGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAGACCAAAAATAACAAGAGGTTACTTATTTCTTGATGTGTCACCTAATCCAAATTTATTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCAATTATGGCTAGAATGGTACATGGTATCAAGGAGTTATTTGATCAAGAACATGAAGGTGTTAGATGGGTGATTATGGGAGACGACGATTCGATATTTTTCTTGGAAAATCTAGTTGATGTTCTTGGAAAATATGATCATAACAAGTATTACTATTTTGGAGGTCAAAGTGAGTACATTTTGTCTAATTTTTGGTACTCATTTAATCAAGGTTTTGGTGGTGCTGGAATTATTATGAGTTTTCCATTGGCAAAAGCATTGGCTCA</gDNA_template>
            <first_frame> L  F  C  F  L  K  L  V  I  S  A  M  Y  V  N  F  E  L  *  I  M  L  I  L  S  L  S  S  F  C  T  C  I  Y  V  P  I  F  V  L  C  I  Q  M  H  K  G  A  L  Q  S  S  H  S  P  L  I  W  G  S  N  F  E  L  I  S  K  R  G  *  R  K  T  Q  R  N  L  T  R  D  H  G  R :   F  T  *  N  T  F  *  R  *  *  R  S  C  W  E  T  Q  G  K  N  N  E  D  T  C  T  T  *  R  S  *  E  I  L  S  G :   A  *  V  S  Y  R  V  N  E  I  G  G  G  T  V  I  G  I  N  R  K  A  G  F  W  V  V  L  S  *  A  V  E  R  Q  E  A  I  E  S  G  N  K  C  K  R  K  T  R  S  F  K  R  C  H  S  G  P  W  Q  R  F  *  T  G  F  L  W  K  Y  *  A  R  R  *  *  I  F  *  S  S  G  S  *  E  *  K  I  N  W  A  R  S  L  N  C  G  C  D  A  *  S  *  H  *  V  *  S  R  V  *  P  H  G  G  H  T  F  R  K  *  L  F  L  T  *  C  T  F  F  T  K  R  R  I  I  *  Y  G  N  F  K  I  P  T  R  *  *  T  Y  *  S  Q  V  C  E  T  K  D  W  P  I  R  V  S  K  S  E  S  K  G  R  K  C  F  N  Y  C  C  E  E  A  I  G  K  S  L  P  P  G  W  S  T  T  W  C  S  I  *  P  A  S  T  G  C  F  *  I  I  S  A  N  S  C  *  R :   P  Y  I  F  W  R  T  C  S  R  S  Y  T  R  F  H  *  S  R  Q  A  I  Q  F  M  H   : R  V  W  I  H  F  Q  D  K  L  S  W  L  *  F  G  W  C  K  L  K  K  V  K  Q  V  F  S  S  *  I  L  H  Q  P  K  A  *  S  E  F  L  Y  A  Q  W  *  S  V  L  S  W  A  E  L  V  D  R  D  A  Q  R  F  W  K  R  S  G  S  *  W  Q  M  Q  L  *  A  Y  G  *  T  *  W  C  S  Q  S  W  L  *  W  W  F  S  K  F  L  H  W  K  S  Q  Q  G  A  G  D  C  *  V  H  *  P  *  W  L  E  P  *  H  C  G  G  G  R  S  S  M  Q  A  F  K  F  C  P  *  G  K  *  A  T  L  L  S  R  E  R  A  L  Q  Y  S  *  K   : G  L  H  P  C  G  P  T  N  R  *  *  R  L  *  *  R  S  C  E  D  T  V  G  E  G  N  E   : G  C  Q  K  S  N  G  *  G  S  S  *  P  S  R  V  C  E  E  S  I  S  D  *  N  A  I  P  D  K  S  S  D  K  :  F  C  C  R  D  V  I  *  L  *  *  R  *  Q  N  R  R  N  Q  F  F  *  G  L  R  D  L  Q  F  P  E  K  S  *  K  V  Q  K  L  *  *  F  L  N  S  Y  L  L  I  A  *  V  T  L  D  L  Y  S  S  K  Q  L  I  M  L  S  S  V  H  Q  H  V  K  L  N  N  F  G  L  C  T  V  K  :  K  K  N  K  I  *  H  T  K  K  L  S  F  F  F  K  K  K  K  M  L  L  L  F  I  D  S  L  R  E  K  F  S  S  I  F  D  K  Y  F  V  A  N  L  C  K  V  I  L  F  S  G  V  I  L  Y  L  A  S  I  F  L  F  K  D  P  N  C  P  T  T  T  P  H  E  Y  S  P  I  S  S  N  D  T  N  L  S  H  L  I  F  G  L  L  G  S  E  K  A  W  H  Y  R  K  S  Y  I  E  T  W  W  R  P  K  I  T  R  G  Y  L  F  L  D  V  S  P  N  P  N  L  L  P  W  S  K  N  S  P  P  Y  R  V  S  T  N  I  T  K  L  V  Q  E  T  H  H  I  A  P  I  M  A  R  M  V  H  G  I  K  E  L  F  D  Q  E  H  E  G  V  R  W  V  I  M  G  D  D  D  S  I  F  F  L  E  N  L  V  D  V  L  G  K  Y  D  H  N  K  Y  Y  Y  F  G  G  Q  S  E  Y  I  L  S  N  F  W  Y  S  F  N  Q  G  F  G  G  A  G  I  I  M  S  F  P  L  A  K  A  L  A   </first_frame>
            <second_frame>  F  F  A  S  *  N  *  *  S  V  R  C  M  S  I  L  S  Y  R  L  C  L  Y  S  L  F  L  L  S  V  H  V  F  M  F  Q  F  L  F  F  V  Y  R  C  T  K  G  R  F  N  L  R  I  L  R  *  F  G  V  R  I  L  S  *  *  V  K  G  V  N  E  K  P  R  E  I  *  R  E  I  M  E   : D  S  H  E  I  H  S  E  D  D  K  G  H  V  G  K  L  K  A  R  I  M  K  T  P  A  Q  L  E  G  L  E  K  F  Y  Q   : E  H  K  Y  P  T  E  S  M  K  L  E  V  A  Q  S  L  G  L  T  E  K  Q  V  S  G  W  F  C  H  R  R  L  K  D  K  R  L  S  S  R  E  T  N  A  K  G  R  Q  D  R  S  S  G  V  I  Q  D  R  G  S  G  F  R  Q  D  S  C  G  S  T  K  Q  G  D  D  K  Y  F  D  H  R  E  V  E  S  R  R  L  T  G  P  E  V  S  T  A  D  V  T  R  E  A  D  T  R  Y  R  A  E  S  N  L  M  E  D  T  P  S  G  S  S  S  S  L  R  D  A  R  F  S  Q  N  V  E  S  F  D  M  A  T  S  R  Y  L  P  G  N  E  P  T  D  L  K  C  V  K  P  R  T  G  P  S  G  Y  L  K  V  K  A  K  V  E  N  A  S  I  T  A  V  K  R  Q  L  G  S  L  Y  R  Q  D  G  P  L  L  G  V  V  F  D  Q  L  P  Q  G  A  F  E  S  S  V  Q  T  P  V  D   : D  P  I  Y  S  G  E  P  V  P  D  L  T  P  D  F  T  K  V  D  K  R  S  N  S  C  I  :  G  Y  G  S  I  S  K  I  N  S  H  G  S  D  L  D  G  A  N  L  K  K  S  N  K  S  S  H  P  E  Y  Y  I  N  Q  K  P  D  R  N  S  S  M  H  N  G  D  R  Y  Y  L  G  R  N  S  S  I  E  M  R  K  D  S  G  R  E  V  A  V  D  G  R  C  N  Y  K  L  M  A  K  H  D  G  A  A  N  P  G  S  S  G  G  F  Q  S  S  Y  I  G  K  V  N  R  E  Q  V  T  A  R  F  T  S  R  D  G  L  S  L  D  I  A  E  E  E  D  L  Q  C  K  P  S  N  F  V  H  K  G  S  K  Q  H  Y  C  P  E  R  E  L  S  S  T  V  E  K  :  D  Y  I  H  V  D  R  P  T  V  D  E  D  Y  N  E  D  H  V  K  I  Q  W  E  K  E  M  R  :  V  A  K  R  A  T  D  E  E  A  P  N  H  Q  E  Y  V  R  K  A  S  V  T  R  M  P  S  Q  T  N  H  Q  I  S :   F  A  A  E  M  S  S  S  F  S  E  D  D  K  T  E  E  T  S  S  F  E  D  *  E  I  Y  S  F  Q  R  K  V  K  K  C  R  S  C  S  D  S  *  I  P  I  C  *  *  L  K  L  L  W  I  C  T  V  Q  N  N  L  *  C  S  H  Q  Y  T  S  M  *  N  *  T  T  L  V  S  V  Q  *  K :   K  K  I  K  S  N  T  Q  K  S  C  H  F  S  S  R  K  K  K  C  Y  F  F  L  L  I  H  *  E  R  S  L  V  Q  Y  L  T  S  I  L  L  L  I  F  A  K  L  S  Y  F  L  V  L  F  F  T  *  P  Q  F  F  F  L  K  I  Q  I  V  Q  L  L  H  L  M  N  I  H  Q  F  H  Q  M  T  Q  I  L  V  I  *  Y  L  V  Y  L  D  L  K  K  H  G  I  I  E  K  V  T  L  K  H  G  G  D  Q  K  *  Q  E  V  T  Y  F  L  M  C  H  L  I  Q  I  Y  Y  H  G  Q  K  I  H  P  L  I  E  F  Q  Q  I  *  Q  N  *  Y  K  K  L  T  T  L  H  Q  L  W  L  E  W  Y  M  V  S  R  S  Y  L  I  K  N  M  K  V  L  D  G  *  L  W  E  T  T  I  R  Y  F  S  W  K  I  *  L  M  F  L  E  N  M  I  I  T  S  I  T  I  L  E  V  K  V  S  T  F  C  L  I  F  G  T  H  L  I  K  V  L  V  V  L  E  L  L  *  V  F  H  W  Q  K  H  W  L  </second_frame>
            <third_frame>   F  L  L  P  E  I  S  N  Q  C  D  V  C  Q  F  *  V  I  D  Y  A  Y  T  L  S  F  F  F  L  Y  M  Y  L  C  S  N  F  C  S  L  Y  T  D  A  Q  R  G  A  S  I  F  A  F  S  A  D  L  G  F  E  F  *  V  N  K  *  K  G  L  T  K  N  P  E  K  F  D  E  R  S  W  K  :  I  H  M  K  Y  I  L  K  M  I  K  V  M  L  G  N  S  R  Q  E  *  *  R  H  L  H  N  L  K  V  L  R  N  S  I  R  :  S  I  S  I  L  Q  S  Q  *  N  W  R  W  H  S  H  W  D  *  Q  K  S  R  F  L  G  G  F  V  I  G  G  *  K  T  R  G  Y  R  V  G  K  Q  M  Q  K  E  D  K  I  V  Q  A  V  S  F  R  T  V  A  A  V  L  D  R  I  L  V  E  V  L  S  K  E  M  I  N  I  L  I  I  G  K  L  R  V  E  D  *  L  G  Q  K  S  Q  L  R  M  *  R  V  K  L  T  L  G  I  E  Q  S  L  T  S  W  R  T  H  L  Q  E  V  A  L  P  Y  V  M  H  V  F  H  K  T  *  N  H  L  I  W  Q  L  Q  D  T  Y  Q  V  M  N  L  L  I  S  S  V  *  N  Q  G  L  A  H  Q  G  I  *  K  *  K  Q  R  *  K  M  L  Q  L  L  L  *  R  G  N  W  E  V  S  T  A  R  M  V  H  Y  L  V  *  Y  L  T  S  F  H  R  V  L  L  N  H  Q  C  K  L  L  L  T  :  T  L  Y  I  L  E  N  L  F  Q  I  L  H  Q  I  S  L  K  S  T  S  D  P  I  H  A  * :   G  M  D  P  F  P  R  *  T  L  M  A  L  I  W  M  V  Q  T  *  K  S  Q  T  S  L  L  I  L  N  I  T  S  T  K  S  L  I  G  I  P  L  C  T  M  V  I  G  T  I  L  G  G  T  R  R  *  R  C  A  K  I  L  E  E  K  W  Q  L  M  A  D  A  T  I  S  L  W  L  N  M  M  V  Q  P  I  L  A  L  V  V  V  F  K  V  P  T  L  E  K  S  T  G  S  R  *  L  L  G  S  L  A  V  M  A  *  A  L  T  L  R  R  R  K  I  F  N  A  S  L  Q  I  L  S  I  R  E  V  S  N  I  I  V  Q  R  E  S  S  P  V  Q  L  K  R :   I  T  S  M  W  T  D  Q  P  L  M  K  I  I  M  K  I  M  *  R  Y  S  G  R  R  K  *  G :   L  P  K  E  Q  R  M  R  K  L  L  T  I  K  S  M  *  G  K  H  Q  *  L  E  C  H  P  R  Q  I  I  R  *   : V  L  L  Q  R  C  H  L  A  L  V  K  M  T  K  Q  K  K  P  V  L  L  R  I  E  R  F  T  V  S  R  E  K  L  K  S  A  E  A  V  V  I  L  E  F  L  F  V  D  S  L  S  Y  F  G  F  V  Q  F  K  T  T  Y  N  A  L  I  S  T  P  A  C  E  I  E  Q  L  W  S  L  Y  S  K   : K  K  K  *  N  L  T  H  K  K  V  V  I  F  L  Q  E  K  K  N  V  T  S  F  Y  *  F  I  E  R  E  V  *  F  N  I  *  Q  V  F  C  C  *  S  L  Q  S  Y  P  I  F  W  C  Y  S  L  L  S  L  N  F  S  F  *  R  S  K  L  S  N  Y  Y  T  S  *  I  F  T  N  F  I  K  *  H  K  S  *  S  F  N  I  W  F  T  W  I  *  K  S  M  A  L  *  K  K  L  H  *  N  M  V  E  T  K  N  N  K  R  L  L  I  S  *  C  V  T  *  S  K  F  I  T  M  V  K  K  F  T  P  L  *  S  F  N  K  Y  N  K  I  S  T  R  N  S  P  H  C  T  N  Y  G  *  N  G  T  W  Y  Q  G  V  I  *  S  R  T  *  R  C  *  M  G  D  Y  G  R  R  R  F  D  I  F  L  G  K  S  S  *  C  S  W  K  I  *  S  *  Q  V  L  L  F  W  R  S  K  *  V  H  F  V  *  F  L  V  L  I  *  S  R  F  W  W  C  W  N  Y  Y  E  F  S  I  G  K  S  I  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132994" stop="132979"/>
                    <exon start="132112" stop="132005"/>
                    <exon start="131909" stop="131262"/>
                    <exon start="130200" stop="130121"/>
                    <exon start="129550" stop="129089"/>
                    <exon start="129010" stop="128927"/>
                    <exon start="128830" stop="128730"/>
                    <exon start="128159" stop="128087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REIMEDSHEIHSEDDKGHVGKLKARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKRLSSRETNAKGRQDRSSGVIQDRGSGFRQDSCGSTKQGDDKYFDHREVESRRLTGPEVSTADVTREADTRYRAESNLMEDTPSGSSSSLRDARFSQNVESFDMATSRYLPGNEPTDLKCVKPRTGPSGYLKVKAKVENASITAVKRQLGSLYRQDGPLLGVVFDQLPQGAFESSVQTPVDDPIYSGEPVPDLTPDFTKVDKRSNSCIGYGSISKINSHGSDLDGANLKKSNKSSHPEYYINQKPDRNSSMHNGDRYYLGRNSSIEMRKDSGREVAVDGRCNYKLMAKHDGAANPGSSGGFQSSYIGKVNREQVTARFTSRDGLSLDIAEEEDLQCKPSNFVHKGSKQHYCPERELSSTVEKDYIHVDRPTVDEDYNEDHVKIQWEKEMRVAKRATDEEAPNHQEYVRKASVTRMPSQTNHQISFAAEMSSSFSEDDKTEETSSFED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126628" stop="125912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTKKLSFFFKKKKMLLLFIDSLREKFSSIFDKYFVANLCKVILFSGVILYLASIFLFKDPNCPTTTPHEYSPISSNDTNLSHLIFGLLGSEKAWHYRKSYIETWWRPKITRGYLFLDVSPNPNLLPWSKNSPPYRVSTNITKLVQETHHIAPIMARMVHGIKELFDQEHEGVRWVIMGDDDSIFFLENLVDVLGKYDHNKYYYFGGQSEYILSNFWYSFNQGFGGAGIIMSFPLAKALA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133287" e_stop="133192"/>
            <exon e_start="133097" e_stop="132979"/>
            <exon e_start="132112" e_stop="132005"/>
            <exon e_start="131909" e_stop="131262"/>
            <exon e_start="130200" e_stop="130121"/>
            <exon e_start="129550" e_stop="129089"/>
            <exon e_start="129010" e_stop="128927"/>
            <exon e_start="128830" e_stop="128730"/>
            <exon e_start="128159" e_stop="127911"/>
            <exon e_start="126646" e_stop="125910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.932"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133287" e_stop="133192" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="133191" i_stop="133098" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="133097" e_stop="132979" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.933">
            <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132112" e_stop="132005" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="131909" e_stop="131262" e_length="648"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="130200" e_stop="130121" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.981">
            <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129550" e_stop="129089" e_length="462"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129010" e_stop="128927" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="128830" e_stop="128730" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570"/>
          </intron>
          <exon e_serial="9" e_score="0.932">
            <gDNA_exon_boundary e_start="128159" e_stop="127911" e_length="249"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="127910" i_stop="126647" i_length="1264"/>
          </intron>
          <exon e_serial="10" e_score="0.950">
            <gDNA_exon_boundary e_start="126646" e_stop="125910" e_length="737"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133287" stop="133192"/>
              <exon start="133097" stop="132979"/>
              <exon start="132112" stop="132005"/>
              <exon start="131909" stop="131663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133275" stop="133192"/>
              <exon start="133097" stop="132979"/>
              <exon start="132112" stop="132005"/>
              <exon start="131909" stop="131486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132070" stop="132005"/>
              <exon start="131909" stop="131441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132055" stop="132005"/>
              <exon start="131909" stop="131262"/>
              <exon start="130200" stop="130121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131900" stop="131348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131413" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129550" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="127911"/>
              <exon start="126646" stop="126618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126622" stop="125910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126622" stop="126121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACTCTCTCCCCTATAGTTTTTGTATTCTTCCCCTCTTTAGTTCACCAAATTTCTTCCCTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGAT : ATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAG : ATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG : AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG : ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA : GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG : GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG : GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG : TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAGAAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAA : AAAAAAAATAAAATCTAACACACAAAAAAGTTGTCATTTTTCTTCAAGAAAAAAAAAATGTTACTTCTTTTTATTGATTCATTGAGAGAGAAGTTTAGTTCAATATTTGACAAGTATTTTGTTGCTAATCTTTGCAAAGTTATCCTATTTTCTGGTGTTATTCTTTACTTAGCCTCAATTTTTCTTTTTAAAGATCCAAATTGTCCAACTACTACACCTCATGAATATTCACCAATTTCATCAAATGACACAAATCTTAGTCATTTAATATTTGGTTTACTTGGATCTGAAAAAGCATGGCATTATAGAAAAAGTTACATTGAAACATGGTGGAGACCAAAAATAACAAGAGGTTACTTATTTCTTGATGTGTCACCTAATCCAAATTTATTACCATGGTCAAAAAATTCACCCCCTTATAGAGTTTCAACAAATATAACAAAATTAGTACAAGAAACTCACCACATTGCACCAATTATGGCTAGAATGGTACATGGTATCAAGGAGTTATTTGATCAAGAACATGAAGGTGTTAGATGGGTGATTATGGGAGACGACGATTCGATATTTTTCTTGGAAAATCTAGTTGATGTTCTTGGAAAATATGATCATAACAAGTATTACTATTTTGGAGGTCAAAGTGAGTACATTTTGTCTAATTTTTGGTACTCATTTAATCAAGGTTTTGGTGGTGCTGGAATTATTATGAGTTTTCCATTGGCAAAAGCATTGGCTCA</gDNA_template>
            <first_frame> F  N  S  L  P  Y  S  F  C  I  L  P  L  F  S  S  P  N  F  F  P  F  L  L  P  E  I  S  N  Q  C  D  :  M  H  K  G  A  L  Q  S  S  H  S  P  L  I  W  G  S  N  F  E  L  I  S  K  R  G  *  R  K  T  Q  R  N  L  T  R  D  H  G  R :   F  T  *  N  T  F  *  R  *  *  R  S  C  W  E  T  Q  G  K  N  N  E  D  T  C  T  T  *  R  S  *  E  I  L  S  G :   A  *  V  S  Y  R  V  N  E  I  G  G  G  T  V  I  G  I  N  R  K  A  G  F  W  V  V  L  S  *  A  V  E  R  Q  E  A  I  E  S  G  N  K  C  K  R  K  T  R  S  F  K  R  C  H  S  G  P  W  Q  R  F  *  T  G  F  L  W  K  Y  *  A  R  R  *  *  I  F  *  S  S  G  S  *  E  *  K  I  N  W  A  R  S  L  N  C  G  C  D  A  *  S  *  H  *  V  *  S  R  V  *  P  H  G  G  H  T  F  R  K  *  L  F  L  T  *  C  T  F  F  T  K  R  R  I  I  *  Y  G  N  F  K  I  P  T  R  *  *  T  Y  *  S  Q  V  C  E  T  K  D  W  P  I  R  V  S  K  S  E  S  K  G  R  K  C  F  N  Y  C  C  E  E  A  I  G  K  S  L  P  P  G  W  S  T  T  W  C  S  I  *  P  A  S  T  G  C  F  *  I  I  S  A  N  S  C  *  R :   P  Y  I  F  W  R  T  C  S  R  S  Y  T  R  F  H  *  S  R  Q  A  I  Q  F  M  H   : R  V  W  I  H  F  Q  D  K  L  S  W  L  *  F  G  W  C  K  L  K  K  V  K  Q  V  F  S  S  *  I  L  H  Q  P  K  A  *  S  E  F  L  Y  A  Q  W  *  S  V  L  S  W  A  E  L  V  D  R  D  A  Q  R  F  W  K  R  S  G  S  *  W  Q  M  Q  L  *  A  Y  G  *  T  *  W  C  S  Q  S  W  L  *  W  W  F  S  K  F  L  H  W  K  S  Q  Q  G  A  G  D  C  *  V  H  *  P  *  W  L  E  P  *  H  C  G  G  G  R  S  S  M  Q  A  F  K  F  C  P  *  G  K  *  A  T  L  L  S  R  E  R  A  L  Q  Y  S  *  K   : G  L  H  P  C  G  P  T  N  R  *  *  R  L  *  *  R  S  C  E  D  T  V  G  E  G  N  E   : G  C  Q  K  S  N  G  *  G  S  S  *  P  S  R  V  C  E  E  S  I  S  D  *  N  A  I  P  D  K  S  S  D  K  :  F  C  C  R  D  V  I  *  L  *  *  R  *  Q  N  R  R  N  Q  F  F  *  G  L  R  D  L  Q  F  P  E  K  S  *  K  V  Q  K  L  *  *  F  L  N  S  Y  L  L  I  A  *  V  T  L  D  L  Y  S  S  K  Q  L  I  M  L  S  S  V  H  Q  H  V  K  L  N  N  F  G  L  C  T  V  K  :  K  K  N  K  I  *  H  T  K  K  L  S  F  F  F  K  K  K  K  M  L  L  L  F  I  D  S  L  R  E  K  F  S  S  I  F  D  K  Y  F  V  A  N  L  C  K  V  I  L  F  S  G  V  I  L  Y  L  A  S  I  F  L  F  K  D  P  N  C  P  T  T  T  P  H  E  Y  S  P  I  S  S  N  D  T  N  L  S  H  L  I  F  G  L  L  G  S  E  K  A  W  H  Y  R  K  S  Y  I  E  T  W  W  R  P  K  I  T  R  G  Y  L  F  L  D  V  S  P  N  P  N  L  L  P  W  S  K  N  S  P  P  Y  R  V  S  T  N  I  T  K  L  V  Q  E  T  H  H  I  A  P  I  M  A  R  M  V  H  G  I  K  E  L  F  D  Q  E  H  E  G  V  R  W  V  I  M  G  D  D  D  S  I  F  F  L  E  N  L  V  D  V  L  G  K  Y  D  H  N  K  Y  Y  Y  F  G  G  Q  S  E  Y  I  L  S  N  F  W  Y  S  F  N  Q  G  F  G  G  A  G  I  I  M  S  F  P  L  A  K  A  L  A   </first_frame>
            <second_frame>  S  T  L  S  P  I  V  F  V  F  F  P  S  L  V  H  Q  I  S  S  L  F  C  F  L  K  L  V  I  S  A  I :   C  T  K  G  R  F  N  L  R  I  L  R  *  F  G  V  R  I  L  S  *  *  V  K  G  V  N  E  K  P  R  E  I  *  R  E  I  M  E   : D  S  H  E  I  H  S  E  D  D  K  G  H  V  G  K  L  K  A  R  I  M  K  T  P  A  Q  L  E  G  L  E  K  F  Y  Q   : E  H  K  Y  P  T  E  S  M  K  L  E  V  A  Q  S  L  G  L  T  E  K  Q  V  S  G  W  F  C  H  R  R  L  K  D  K  R  L  S  S  R  E  T  N  A  K  G  R  Q  D  R  S  S  G  V  I  Q  D  R  G  S  G  F  R  Q  D  S  C  G  S  T  K  Q  G  D  D  K  Y  F  D  H  R  E  V  E  S  R  R  L  T  G  P  E  V  S  T  A  D  V  T  R  E  A  D  T  R  Y  R  A  E  S  N  L  M  E  D  T  P  S  G  S  S  S  S  L  R  D  A  R  F  S  Q  N  V  E  S  F  D  M  A  T  S  R  Y  L  P  G  N  E  P  T  D  L  K  C  V  K  P  R  T  G  P  S  G  Y  L  K  V  K  A  K  V  E  N  A  S  I  T  A  V  K  R  Q  L  G  S  L  Y  R  Q  D  G  P  L  L  G  V  V  F  D  Q  L  P  Q  G  A  F  E  S  S  V  Q  T  P  V  D   : D  P  I  Y  S  G  E  P  V  P  D  L  T  P  D  F  T  K  V  D  K  R  S  N  S  C  I  :  G  Y  G  S  I  S  K  I  N  S  H  G  S  D  L  D  G  A  N  L  K  K  S  N  K  S  S  H  P  E  Y  Y  I  N  Q  K  P  D  R  N  S  S  M  H  N  G  D  R  Y  Y  L  G  R  N  S  S  I  E  M  R  K  D  S  G  R  E  V  A  V  D  G  R  C  N  Y  K  L  M  A  K  H  D  G  A  A  N  P  G  S  S  G  G  F  Q  S  S  Y  I  G  K  V  N  R  E  Q  V  T  A  R  F  T  S  R  D  G  L  S  L  D  I  A  E  E  E  D  L  Q  C  K  P  S  N  F  V  H  K  G  S  K  Q  H  Y  C  P  E  R  E  L  S  S  T  V  E  K  :  D  Y  I  H  V  D  R  P  T  V  D  E  D  Y  N  E  D  H  V  K  I  Q  W  E  K  E  M  R  :  V  A  K  R  A  T  D  E  E  A  P  N  H  Q  E  Y  V  R  K  A  S  V  T  R  M  P  S  Q  T  N  H  Q  I  S :   F  A  A  E  M  S  S  S  F  S  E  D  D  K  T  E  E  T  S  S  F  E  D  *  E  I  Y  S  F  Q  R  K  V  K  K  C  R  S  C  S  D  S  *  I  P  I  C  *  *  L  K  L  L  W  I  C  T  V  Q  N  N  L  *  C  S  H  Q  Y  T  S  M  *  N  *  T  T  L  V  S  V  Q  *  K :   K  K  I  K  S  N  T  Q  K  S  C  H  F  S  S  R  K  K  K  C  Y  F  F  L  L  I  H  *  E  R  S  L  V  Q  Y  L  T  S  I  L  L  L  I  F  A  K  L  S  Y  F  L  V  L  F  F  T  *  P  Q  F  F  F  L  K  I  Q  I  V  Q  L  L  H  L  M  N  I  H  Q  F  H  Q  M  T  Q  I  L  V  I  *  Y  L  V  Y  L  D  L  K  K  H  G  I  I  E  K  V  T  L  K  H  G  G  D  Q  K  *  Q  E  V  T  Y  F  L  M  C  H  L  I  Q  I  Y  Y  H  G  Q  K  I  H  P  L  I  E  F  Q  Q  I  *  Q  N  *  Y  K  K  L  T  T  L  H  Q  L  W  L  E  W  Y  M  V  S  R  S  Y  L  I  K  N  M  K  V  L  D  G  *  L  W  E  T  T  I  R  Y  F  S  W  K  I  *  L  M  F  L  E  N  M  I  I  T  S  I  T  I  L  E  V  K  V  S  T  F  C  L  I  F  G  T  H  L  I  K  V  L  V  V  L  E  L  L  *  V  F  H  W  Q  K  H  W  L  </second_frame>
            <third_frame>   Q  L  S  P  L  *  F  L  Y  S  S  P  L  *  F  T  K  F  L  P  F  F  A  S  *  N  *  *  S  V  R   : Y  A  Q  R  G  A  S  I  F  A  F  S  A  D  L  G  F  E  F  *  V  N  K  *  K  G  L  T  K  N  P  E  K  F  D  E  R  S  W  K  :  I  H  M  K  Y  I  L  K  M  I  K  V  M  L  G  N  S  R  Q  E  *  *  R  H  L  H  N  L  K  V  L  R  N  S  I  R  :  S  I  S  I  L  Q  S  Q  *  N  W  R  W  H  S  H  W  D  *  Q  K  S  R  F  L  G  G  F  V  I  G  G  *  K  T  R  G  Y  R  V  G  K  Q  M  Q  K  E  D  K  I  V  Q  A  V  S  F  R  T  V  A  A  V  L  D  R  I  L  V  E  V  L  S  K  E  M  I  N  I  L  I  I  G  K  L  R  V  E  D  *  L  G  Q  K  S  Q  L  R  M  *  R  V  K  L  T  L  G  I  E  Q  S  L  T  S  W  R  T  H  L  Q  E  V  A  L  P  Y  V  M  H  V  F  H  K  T  *  N  H  L  I  W  Q  L  Q  D  T  Y  Q  V  M  N  L  L  I  S  S  V  *  N  Q  G  L  A  H  Q  G  I  *  K  *  K  Q  R  *  K  M  L  Q  L  L  L  *  R  G  N  W  E  V  S  T  A  R  M  V  H  Y  L  V  *  Y  L  T  S  F  H  R  V  L  L  N  H  Q  C  K  L  L  L  T  :  T  L  Y  I  L  E  N  L  F  Q  I  L  H  Q  I  S  L  K  S  T  S  D  P  I  H  A  * :   G  M  D  P  F  P  R  *  T  L  M  A  L  I  W  M  V  Q  T  *  K  S  Q  T  S  L  L  I  L  N  I  T  S  T  K  S  L  I  G  I  P  L  C  T  M  V  I  G  T  I  L  G  G  T  R  R  *  R  C  A  K  I  L  E  E  K  W  Q  L  M  A  D  A  T  I  S  L  W  L  N  M  M  V  Q  P  I  L  A  L  V  V  V  F  K  V  P  T  L  E  K  S  T  G  S  R  *  L  L  G  S  L  A  V  M  A  *  A  L  T  L  R  R  R  K  I  F  N  A  S  L  Q  I  L  S  I  R  E  V  S  N  I  I  V  Q  R  E  S  S  P  V  Q  L  K  R :   I  T  S  M  W  T  D  Q  P  L  M  K  I  I  M  K  I  M  *  R  Y  S  G  R  R  K  *  G :   L  P  K  E  Q  R  M  R  K  L  L  T  I  K  S  M  *  G  K  H  Q  *  L  E  C  H  P  R  Q  I  I  R  *   : V  L  L  Q  R  C  H  L  A  L  V  K  M  T  K  Q  K  K  P  V  L  L  R  I  E  R  F  T  V  S  R  E  K  L  K  S  A  E  A  V  V  I  L  E  F  L  F  V  D  S  L  S  Y  F  G  F  V  Q  F  K  T  T  Y  N  A  L  I  S  T  P  A  C  E  I  E  Q  L  W  S  L  Y  S  K   : K  K  K  *  N  L  T  H  K  K  V  V  I  F  L  Q  E  K  K  N  V  T  S  F  Y  *  F  I  E  R  E  V  *  F  N  I  *  Q  V  F  C  C  *  S  L  Q  S  Y  P  I  F  W  C  Y  S  L  L  S  L  N  F  S  F  *  R  S  K  L  S  N  Y  Y  T  S  *  I  F  T  N  F  I  K  *  H  K  S  *  S  F  N  I  W  F  T  W  I  *  K  S  M  A  L  *  K  K  L  H  *  N  M  V  E  T  K  N  N  K  R  L  L  I  S  *  C  V  T  *  S  K  F  I  T  M  V  K  K  F  T  P  L  *  S  F  N  K  Y  N  K  I  S  T  R  N  S  P  H  C  T  N  Y  G  *  N  G  T  W  Y  Q  G  V  I  *  S  R  T  *  R  C  *  M  G  D  Y  G  R  R  R  F  D  I  F  L  G  K  S  S  *  C  S  W  K  I  *  S  *  Q  V  L  L  F  W  R  S  K  *  V  H  F  V  *  F  L  V  L  I  *  S  R  F  W  W  C  W  N  Y  Y  E  F  S  I  G  K  S  I  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132994" stop="132979"/>
                    <exon start="132112" stop="132005"/>
                    <exon start="131909" stop="131262"/>
                    <exon start="130200" stop="130121"/>
                    <exon start="129550" stop="129089"/>
                    <exon start="129010" stop="128927"/>
                    <exon start="128830" stop="128730"/>
                    <exon start="128159" stop="128087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REIMEDSHEIHSEDDKGHVGKLKARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKRLSSRETNAKGRQDRSSGVIQDRGSGFRQDSCGSTKQGDDKYFDHREVESRRLTGPEVSTADVTREADTRYRAESNLMEDTPSGSSSSLRDARFSQNVESFDMATSRYLPGNEPTDLKCVKPRTGPSGYLKVKAKVENASITAVKRQLGSLYRQDGPLLGVVFDQLPQGAFESSVQTPVDDPIYSGEPVPDLTPDFTKVDKRSNSCIGYGSISKINSHGSDLDGANLKKSNKSSHPEYYINQKPDRNSSMHNGDRYYLGRNSSIEMRKDSGREVAVDGRCNYKLMAKHDGAANPGSSGGFQSSYIGKVNREQVTARFTSRDGLSLDIAEEEDLQCKPSNFVHKGSKQHYCPERELSSTVEKDYIHVDRPTVDEDYNEDHVKIQWEKEMRVAKRATDEEAPNHQEYVRKASVTRMPSQTNHQISFAAEMSSSFSEDDKTEETSSFED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126628" stop="125912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTKKLSFFFKKKKMLLLFIDSLREKFSSIFDKYFVANLCKVILFSGVILYLASIFLFKDPNCPTTTPHEYSPISSNDTNLSHLIFGLLGSEKAWHYRKSYIETWWRPKITRGYLFLDVSPNPNLLPWSKNSPPYRVSTNITKLVQETHHIAPIMARMVHGIKELFDQEHEGVRWVIMGDDDSIFFLENLVDVLGKYDHNKYYYFGGQSEYILSNFWYSFNQGFGGAGIIMSFPLAKALA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="133226" e_stop="132979"/>
            <exon e_start="132112" e_stop="132005"/>
            <exon e_start="131909" e_stop="131262"/>
            <exon e_start="130200" e_stop="130121"/>
            <exon e_start="129550" e_stop="129089"/>
            <exon e_start="129010" e_stop="128927"/>
            <exon e_start="128830" e_stop="128730"/>
            <exon e_start="128159" e_stop="127792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.933" e_score="0.935"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="0.924"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="133226" e_stop="132979" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.933">
            <gDNA_intron_boundary i_start="132978" i_stop="132113" i_length="866"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="132112" e_stop="132005" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="132004" i_stop="131910" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="131909" e_stop="131262" e_length="648"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="131261" i_stop="130201" i_length="1061"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130200" e_stop="130121" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.981">
            <gDNA_intron_boundary i_start="130120" i_stop="129551" i_length="570"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="129550" e_stop="129089" e_length="462"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="129088" i_stop="129011" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129010" e_stop="128927" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.981">
            <gDNA_intron_boundary i_start="128926" i_stop="128831" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="128830" e_stop="128730" e_length="101"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.972">
            <gDNA_intron_boundary i_start="128729" i_stop="128160" i_length="570"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="128159" e_stop="127792" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133226" stop="132979"/>
              <exon start="132112" stop="132005"/>
              <exon start="131909" stop="131573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133226" stop="132979"/>
              <exon start="132112" stop="132021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132070" stop="132005"/>
              <exon start="131909" stop="131441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132055" stop="132005"/>
              <exon start="131909" stop="131262"/>
              <exon start="130200" stop="130121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131900" stop="131348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131817" stop="131572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131413" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131401" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131295" stop="131262"/>
              <exon start="130200" stop="130121"/>
              <exon start="129550" stop="129322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129550" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129370" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="128122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129158" stop="129089"/>
              <exon start="129010" stop="128927"/>
              <exon start="128830" stop="128730"/>
              <exon start="128159" stop="127814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128811" stop="128730"/>
              <exon start="128159" stop="127792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411809" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTGCTTCCTGAAATTAGTAATCAGTGCGATGTATGTCAATTTTGAGTTATAGATTATGCTTATACTCTCTCTTTCTTCTTTCTGTACATGTATTTATGTTCCAATTTTTGTTCTTTGTATACAGATGCACAAAGGGGCGCTTCAATCTTCGCATTCTCCGCTGATTTGGGGTTCGAATTTTGAGTTAATAAGTAAAAGGGGTTAACGAAAAACCCAGAGAAATTTGACGAGAGATCATGGAAG : ATTCACATGAAATACATTCTGAAGATGATAAAGGTCATGTTGGGAAACTCAAGGCAAGAATAATGAAGACACCTGCACAACTTGAAGGTCTTGAGAAATTCTATCAGG : AGCATAAGTATCCTACAGAGTCAATGAAATTGGAGGTGGCACAGTCATTGGGATTAACAGAAAAGCAGGTTTCTGGGTGGTTTTGTCATAGGCGGTTGAAAGACAAGAGGCTATCGAGTCGGGAAACAAATGCAAAAGGAAGACAAGATCGTTCAAGCGGTGTCATTCAGGACCGTGGCAGCGGTTTTAGACAGGATTCTTGTGGAAGTACTAAGCAAGGAGATGATAAATATTTTGATCATCGGGAAGTTGAGAGTAGAAGATTAACTGGGCCAGAAGTCTCAACTGCGGATGTGACGCGTGAAGCTGACACTAGGTATAGAGCAGAGTCTAACCTCATGGAGGACACACCTTCAGGAAGTAGCTCTTCCTTACGTGATGCACGTTTTTCACAAAACGTAGAATCATTTGATATGGCAACTTCAAGATACCTACCAGGTAATGAACCTACTGATCTCAAGTGTGTGAAACCAAGGACTGGCCCATCAGGGTATCTAAAAGTGAAAGCAAAGGTAGAAAATGCTTCAATTACTGCTGTGAAGAGGCAATTGGGAAGTCTCTACCGCCAGGATGGTCCACTACTTGGTGTAGTATTTGACCAGCTTCCACAGGGTGCTTTTGAATCATCAGTGCAAACTCCTGTTGACG : ACCCTATATATTCTGGAGAACCTGTTCCAGATCTTACACCAGATTTCACTAAAGTCGACAAGCGATCCAATTCATGCATA : GGGTATGGATCCATTTCCAAGATAAACTCTCATGGCTCTGATTTGGATGGTGCAAACTTAAAAAAGTCAAACAAGTCTTCTCATCCTGAATATTACATCAACCAAAAGCCTGATCGGAATTCCTCTATGCACAATGGTGATCGGTACTATCTTGGGCGGAACTCGTCGATAGAGATGCGCAAAGATTCTGGAAGAGAAGTGGCAGTTGATGGCAGATGCAACTATAAGCTTATGGCTAAACATGATGGTGCAGCCAATCCTGGCTCTAGTGGTGGTTTTCAAAGTTCCTACATTGGAAAAGTCAACAGGGAGCAGGTGACTGCTAGGTTCACTAGCCGTGATGGCTTGAGCCTTGACATTGCGGAGGAGGAAGATCTTCAATGCAAGCCTTCAAATTTTGTCCATAAGGGAAGTAAGCAACATTATTGTCCAGAGAGAGAGCTCTCCAGTACAGTTGAAAAG : GATTACATCCATGTGGACCGACCAACCGTTGATGAAGATTATAATGAAGATCATGTGAAGATACAGTGGGAGAAGGAAATGAGG : GTTGCCAAAAGAGCAACGGATGAGGAAGCTCCTAACCATCAAGAGTATGTGAGGAAAGCATCAGTGACTAGAATGCCATCCCAGACAAATCATCAGATAAG : TTTTGCTGCAGAGATGTCATCTAGCTTTAGTGAAGATGACAAAACAGAAGAAACCAGTTCTTTTGAGGATTGAGAGATTTACAGTTTCCAGAGAAAAGTTAAAAAGTGCAGAAGCTGTAGTGATTCTTGAATTCCTATTTGTTGATAGCTTAAGTTACTTTGGATTTGTACAGTTCAAAACAACTTATAATGCTCTCATCAGTACACCAGCATGTGAAATTGAACAACTTTGGTCTCTGTACAGTAAAAGTAGTAGTACTTTTTTTTAAAATGTAGTAGCTGGATGCTGAAATTAGAAGAATATTGAATTTTATATTGACATTTAAGCTTTAGATTCAATGAGAAATTGATCAAAATAAACCTTCATC</gDNA_template>
            <first_frame> L  F  C  F  L  K  L  V  I  S  A  M  Y  V  N  F  E  L  *  I  M  L  I  L  S  L  S  S  F  C  T  C  I  Y  V  P  I  F  V  L  C  I  Q  M  H  K  G  A  L  Q  S  S  H  S  P  L  I  W  G  S  N  F  E  L  I  S  K  R  G  *  R  K  T  Q  R  N  L  T  R  D  H  G  R :   F  T  *  N  T  F  *  R  *  *  R  S  C  W  E  T  Q  G  K  N  N  E  D  T  C  T  T  *  R  S  *  E  I  L  S  G :   A  *  V  S  Y  R  V  N  E  I  G  G  G  T  V  I  G  I  N  R  K  A  G  F  W  V  V  L  S  *  A  V  E  R  Q  E  A  I  E  S  G  N  K  C  K  R  K  T  R  S  F  K  R  C  H  S  G  P  W  Q  R  F  *  T  G  F  L  W  K  Y  *  A  R  R  *  *  I  F  *  S  S  G  S  *  E  *  K  I  N  W  A  R  S  L  N  C  G  C  D  A  *  S  *  H  *  V  *  S  R  V  *  P  H  G  G  H  T  F  R  K  *  L  F  L  T  *  C  T  F  F  T  K  R  R  I  I  *  Y  G  N  F  K  I  P  T  R  *  *  T  Y  *  S  Q  V  C  E  T  K  D  W  P  I  R  V  S  K  S  E  S  K  G  R  K  C  F  N  Y  C  C  E  E  A  I  G  K  S  L  P  P  G  W  S  T  T  W  C  S  I  *  P  A  S  T  G  C  F  *  I  I  S  A  N  S  C  *  R :   P  Y  I  F  W  R  T  C  S  R  S  Y  T  R  F  H  *  S  R  Q  A  I  Q  F  M  H   : R  V  W  I  H  F  Q  D  K  L  S  W  L  *  F  G  W  C  K  L  K  K  V  K  Q  V  F  S  S  *  I  L  H  Q  P  K  A  *  S  E  F  L  Y  A  Q  W  *  S  V  L  S  W  A  E  L  V  D  R  D  A  Q  R  F  W  K  R  S  G  S  *  W  Q  M  Q  L  *  A  Y  G  *  T  *  W  C  S  Q  S  W  L  *  W  W  F  S  K  F  L  H  W  K  S  Q  Q  G  A  G  D  C  *  V  H  *  P  *  W  L  E  P  *  H  C  G  G  G  R  S  S  M  Q  A  F  K  F  C  P  *  G  K  *  A  T  L  L  S  R  E  R  A  L  Q  Y  S  *  K   : G  L  H  P  C  G  P  T  N  R  *  *  R  L  *  *  R  S  C  E  D  T  V  G  E  G  N  E   : G  C  Q  K  S  N  G  *  G  S  S  *  P  S  R  V  C  E  E  S  I  S  D  *  N  A  I  P  D  K  S  S  D  K  :  F  C  C  R  D  V  I  *  L  *  *  R  *  Q  N  R  R  N  Q  F  F  *  G  L  R  D  L  Q  F  P  E  K  S  *  K  V  Q  K  L  *  *  F  L  N  S  Y  L  L  I  A  *  V  T  L  D  L  Y  S  S  K  Q  L  I  M  L  S  S  V  H  Q  H  V  K  L  N  N  F  G  L  C  T  V  K  V  V  V  L  F  F  K  M  *  *  L  D  A  E  I  R  R  I  L  N  F  I  L  T  F  K  L  *  I  Q  *  E  I  D  Q  N  K  P  S   </first_frame>
            <second_frame>  F  F  A  S  *  N  *  *  S  V  R  C  M  S  I  L  S  Y  R  L  C  L  Y  S  L  F  L  L  S  V  H  V  F  M  F  Q  F  L  F  F  V  Y  R  C  T  K  G  R  F  N  L  R  I  L  R  *  F  G  V  R  I  L  S  *  *  V  K  G  V  N  E  K  P  R  E  I  *  R  E  I  M  E   : D  S  H  E  I  H  S  E  D  D  K  G  H  V  G  K  L  K  A  R  I  M  K  T  P  A  Q  L  E  G  L  E  K  F  Y  Q   : E  H  K  Y  P  T  E  S  M  K  L  E  V  A  Q  S  L  G  L  T  E  K  Q  V  S  G  W  F  C  H  R  R  L  K  D  K  R  L  S  S  R  E  T  N  A  K  G  R  Q  D  R  S  S  G  V  I  Q  D  R  G  S  G  F  R  Q  D  S  C  G  S  T  K  Q  G  D  D  K  Y  F  D  H  R  E  V  E  S  R  R  L  T  G  P  E  V  S  T  A  D  V  T  R  E  A  D  T  R  Y  R  A  E  S  N  L  M  E  D  T  P  S  G  S  S  S  S  L  R  D  A  R  F  S  Q  N  V  E  S  F  D  M  A  T  S  R  Y  L  P  G  N  E  P  T  D  L  K  C  V  K  P  R  T  G  P  S  G  Y  L  K  V  K  A  K  V  E  N  A  S  I  T  A  V  K  R  Q  L  G  S  L  Y  R  Q  D  G  P  L  L  G  V  V  F  D  Q  L  P  Q  G  A  F  E  S  S  V  Q  T  P  V  D   : D  P  I  Y  S  G  E  P  V  P  D  L  T  P  D  F  T  K  V  D  K  R  S  N  S  C  I  :  G  Y  G  S  I  S  K  I  N  S  H  G  S  D  L  D  G  A  N  L  K  K  S  N  K  S  S  H  P  E  Y  Y  I  N  Q  K  P  D  R  N  S  S  M  H  N  G  D  R  Y  Y  L  G  R  N  S  S  I  E  M  R  K  D  S  G  R  E  V  A  V  D  G  R  C  N  Y  K  L  M  A  K  H  D  G  A  A  N  P  G  S  S  G  G  F  Q  S  S  Y  I  G  K  V  N  R  E  Q  V  T  A  R  F  T  S  R  D  G  L  S  L  D  I  A  E  E  E  D  L  Q  C  K  P  S  N  F  V  H  K  G  S  K  Q  H  Y  C  P  E  R  E  L  S  S  T  V  E  K  :  D  Y  I  H  V  D  R  P  T  V  D  E  D  Y  N  E  D  H  V  K  I  Q  W  E  K  E  M  R  :  V  A  K  R  A  T  D  E  E  A  P  N  H  Q  E  Y  V  R  K  A  S  V  T  R  M  P  S  Q  T  N  H  Q  I  S :   F  A  A  E  M  S  S  S  F  S  E  D  D  K  T  E  E  T  S  S  F  E  D  *  E  I  Y  S  F  Q  R  K  V  K  K  C  R  S  C  S  D  S  *  I  P  I  C  *  *  L  K  L  L  W  I  C  T  V  Q  N  N  L  *  C  S  H  Q  Y  T  S  M  *  N  *  T  T  L  V  S  V  Q  *  K  *  *  Y  F  F  L  K  C  S  S  W  M  L  K  L  E  E  Y  *  I  L  Y  *  H  L  S  F  R  F  N  E  K  L  I  K  I  N  L  H  </second_frame>
            <third_frame>   F  L  L  P  E  I  S  N  Q  C  D  V  C  Q  F  *  V  I  D  Y  A  Y  T  L  S  F  F  F  L  Y  M  Y  L  C  S  N  F  C  S  L  Y  T  D  A  Q  R  G  A  S  I  F  A  F  S  A  D  L  G  F  E  F  *  V  N  K  *  K  G  L  T  K  N  P  E  K  F  D  E  R  S  W  K  :  I  H  M  K  Y  I  L  K  M  I  K  V  M  L  G  N  S  R  Q  E  *  *  R  H  L  H  N  L  K  V  L  R  N  S  I  R  :  S  I  S  I  L  Q  S  Q  *  N  W  R  W  H  S  H  W  D  *  Q  K  S  R  F  L  G  G  F  V  I  G  G  *  K  T  R  G  Y  R  V  G  K  Q  M  Q  K  E  D  K  I  V  Q  A  V  S  F  R  T  V  A  A  V  L  D  R  I  L  V  E  V  L  S  K  E  M  I  N  I  L  I  I  G  K  L  R  V  E  D  *  L  G  Q  K  S  Q  L  R  M  *  R  V  K  L  T  L  G  I  E  Q  S  L  T  S  W  R  T  H  L  Q  E  V  A  L  P  Y  V  M  H  V  F  H  K  T  *  N  H  L  I  W  Q  L  Q  D  T  Y  Q  V  M  N  L  L  I  S  S  V  *  N  Q  G  L  A  H  Q  G  I  *  K  *  K  Q  R  *  K  M  L  Q  L  L  L  *  R  G  N  W  E  V  S  T  A  R  M  V  H  Y  L  V  *  Y  L  T  S  F  H  R  V  L  L  N  H  Q  C  K  L  L  L  T  :  T  L  Y  I  L  E  N  L  F  Q  I  L  H  Q  I  S  L  K  S  T  S  D  P  I  H  A  * :   G  M  D  P  F  P  R  *  T  L  M  A  L  I  W  M  V  Q  T  *  K  S  Q  T  S  L  L  I  L  N  I  T  S  T  K  S  L  I  G  I  P  L  C  T  M  V  I  G  T  I  L  G  G  T  R  R  *  R  C  A  K  I  L  E  E  K  W  Q  L  M  A  D  A  T  I  S  L  W  L  N  M  M  V  Q  P  I  L  A  L  V  V  V  F  K  V  P  T  L  E  K  S  T  G  S  R  *  L  L  G  S  L  A  V  M  A  *  A  L  T  L  R  R  R  K  I  F  N  A  S  L  Q  I  L  S  I  R  E  V  S  N  I  I  V  Q  R  E  S  S  P  V  Q  L  K  R :   I  T  S  M  W  T  D  Q  P  L  M  K  I  I  M  K  I  M  *  R  Y  S  G  R  R  K  *  G :   L  P  K  E  Q  R  M  R  K  L  L  T  I  K  S  M  *  G  K  H  Q  *  L  E  C  H  P  R  Q  I  I  R  *   : V  L  L  Q  R  C  H  L  A  L  V  K  M  T  K  Q  K  K  P  V  L  L  R  I  E  R  F  T  V  S  R  E  K  L  K  S  A  E  A  V  V  I  L  E  F  L  F  V  D  S  L  S  Y  F  G  F  V  Q  F  K  T  T  Y  N  A  L  I  S  T  P  A  C  E  I  E  Q  L  W  S  L  Y  S  K  S  S  S  T  F  F  *  N  V  V  A  G  C  *  N  *  K  N  I  E  F  Y  I  D  I  *  A  L  D  S  M  R  N  *  S  K  *  T  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132994" stop="132979"/>
                    <exon start="132112" stop="132005"/>
                    <exon start="131909" stop="131262"/>
                    <exon start="130200" stop="130121"/>
                    <exon start="129550" stop="129089"/>
                    <exon start="129010" stop="128927"/>
                    <exon start="128830" stop="128730"/>
                    <exon start="128159" stop="128087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REIMEDSHEIHSEDDKGHVGKLKARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKRLSSRETNAKGRQDRSSGVIQDRGSGFRQDSCGSTKQGDDKYFDHREVESRRLTGPEVSTADVTREADTRYRAESNLMEDTPSGSSSSLRDARFSQNVESFDMATSRYLPGNEPTDLKCVKPRTGPSGYLKVKAKVENASITAVKRQLGSLYRQDGPLLGVVFDQLPQGAFESSVQTPVDDPIYSGEPVPDLTPDFTKVDKRSNSCIGYGSISKINSHGSDLDGANLKKSNKSSHPEYYINQKPDRNSSMHNGDRYYLGRNSSIEMRKDSGREVAVDGRCNYKLMAKHDGAANPGSSGGFQSSYIGKVNREQVTARFTSRDGLSLDIAEEEDLQCKPSNFVHKGSKQHYCPERELSSTVEKDYIHVDRPTVDEDYNEDHVKIQWEKEMRVAKRATDEEAPNHQEYVRKASVTRMPSQTNHQISFAAEMSSSFSEDDKTEETSSFED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="134261" PGL_stop="133520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134228" e_stop="134059"/>
            <exon e_start="133976" e_stop="133520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="134228" e_stop="134059" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134058" i_stop="133977" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="133976" e_stop="133520" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134228" stop="134059"/>
              <exon start="133976" stop="133520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373202" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134095" stop="134059"/>
              <exon start="133976" stop="133603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : AAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTGTTGTANNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  L :   N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W  Q  L  M  *  L  A  N  Y  Y  L  Y  F  R  Y  D  Q  K  I  K  *  N  N  C  C  I  F  F  F  F  F  F  F </first_frame>
            <second_frame>  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : *  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y  G  N  L  C  N  L  Q  I  I  I  C  T  S  V  M  T  K  K  *  N  K  I  I  V  V  F  F  F  F  F  F  F   </second_frame>
            <third_frame>   S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  A  T  Y  V  T  C  K  L  L  F  V  L  P  L  *  P  K  N  K  I  K  *  L  L  Y  F  F  F  F  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133909" stop="133637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="134261" e_stop="134059"/>
            <exon e_start="133979" e_stop="133521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="134261" e_stop="134059" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134058" i_stop="133980" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="133979" e_stop="133521" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134261" stop="134059"/>
              <exon start="133979" stop="133521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAATGATATGCCACGAGAAGCTCTCAATGATACAGTACAAGCACAAGTGATATCTCCTGTTTGGCATATTGCATCATATCTGCAAGCTGCTTCTCTTTTCACATTGGGAAGGGAAAACGAGGCACAAATCGCACTTAGAGAGGCTGCCATACTCGAAGAAGAGAAAAATGCATCTGCTTGAAAGTGGCAACTGGAGCTCTT : CAGAAATGCAGCTGAGCTATCGATATGTCACCTCGTGTATTCAATGGTTAGTAAATTGTGTCAATAGTGAATTCTTTTGCAACATAATTGGATGAAGTTGCTTTGTATCTACAAGTTAGTCCTTGTTAATTTCGCGCTATGGAGTTATCCATCATTCCCGAGTTCTGAAGGTTGCGTTTTTCCCAAAGGGTTGGTTCCAGATAGATTTCTCGATCATCGAAAAAAACAATACCATAGGTTCCTAAAGATACAAGACCTATGGAGAAATTATGAAGAGAGACTAGCGGTCTGTAATTTTTGTACAGTACTATATGGTTTTATTATTGTGGGATTAAATTTATAAAACTTTTATTTTTAAGTATGGCAACTTATGTAACTTGCAAATTATTATTTGTACTTCCGTTATGACCAAAAAATAAAATAAAATAATTGTTGTANNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> M  N  D  M  P  R  E  A  L  N  D  T  V  Q  A  Q  V  I  S  P  V  W  H  I  A  S  Y  L  Q  A  A  S  L  F  T  L  G  R  E  N  E  A  Q  I  A  L  R  E  A  A  I  L  E  E  E  K  N  A  S  A  *  K  W  Q  L  E  L  F :   R  N  A  A  E  L  S  I  C  H  L  V  Y  S  M  V  S  K  L  C  Q  *  *  I  L  L  Q  H  N  W  M  K  L  L  C  I  Y  K  L  V  L  V  N  F  A  L  W  S  Y  P  S  F  P  S  S  E  G  C  V  F  P  K  G  L  V  P  D  R  F  L  D  H  R  K  K  Q  Y  H  R  F  L  K  I  Q  D  L  W  R  N  Y  E  E  R  L  A  V  C  N  F  C  T  V  L  Y  G  F  I  I  V  G  L  N  L  *  N  F  Y  F  *  V  W  Q  L  M  *  L  A  N  Y  Y  L  Y  F  R  Y  D  Q  K  I  K  *  N  N  C  C  I  F  F  F  F  F  F   </first_frame>
            <second_frame>  *  M  I  C  H  E  K  L  S  M  I  Q  Y  K  H  K  *  Y  L  L  F  G  I  L  H  H  I  C  K  L  L  L  F  S  H  W  E  G  K  T  R  H  K  S  H  L  E  R  L  P  Y  S  K  K  R  K  M  H  L  L  E  S  G  N  W  S  S   : S  E  M  Q  L  S  Y  R  Y  V  T  S  C  I  Q  W  L  V  N  C  V  N  S  E  F  F  C  N  I  I  G  *  S  C  F  V  S  T  S  *  S  L  L  I  S  R  Y  G  V  I  H  H  S  R  V  L  K  V  A  F  F  P  K  G  W  F  Q  I  D  F  S  I  I  E  K  N  N  T  I  G  S  *  R  Y  K  T  Y  G  E  I  M  K  R  D  *  R  S  V  I  F  V  Q  Y  Y  M  V  L  L  L  W  D  *  I  Y  K  T  F  I  F  K  Y  G  N  L  C  N  L  Q  I  I  I  C  T  S  V  M  T  K  K  *  N  K  I  I  V  V  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   E  *  Y  A  T  R  S  S  Q  *  Y  S  T  S  T  S  D  I  S  C  L  A  Y  C  I  I  S  A  S  C  F  S  F  H  I  G  K  G  K  R  G  T  N  R  T  *  R  G  C  H  T  R  R  R  E  K  C  I  C  L  K  V  A  T  G  A  L  :  Q  K  C  S  *  A  I  D  M  S  P  R  V  F  N  G  *  *  I  V  S  I  V  N  S  F  A  T  *  L  D  E  V  A  L  Y  L  Q  V  S  P  C  *  F  R  A  M  E  L  S  I  I  P  E  F  *  R  L  R  F  S  Q  R  V  G  S  R  *  I  S  R  S  S  K  K  T  I  P  *  V  P  K  D  T  R  P  M  E  K  L  *  R  E  T  S  G  L  *  F  L  Y  S  T  I  W  F  Y  Y  C  G  I  K  F  I  K  L  L  F  L  S  M  A  T  Y  V  T  C  K  L  L  F  V  L  P  L  *  P  K  N  K  I  K  *  L  L  Y  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133909" stop="133637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLQHNWMKLLCIYKLVLVNFALWSYPSFPSSEGCVFPKGLVPDRFLDHRKKQYHRFLKIQDLWRNYEERLAVCNFCTVLYGFIIVGLNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0147G13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134209" stop="134059"/>
                    <exon start="133979" stop="133885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLLFGILHHICKLLLFSHWEGKTRHKSHLERLPYSKKRKMHLLESGNWSSSEMQLSYRYVTSCIQWLVNCVNSEFFCNIIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 275 chains have been computed
$ 
$ memory statistics:
$ 1174464 bytes spliced alignments in total
$ 198 spliced alignments have been stored
$ 5931 bytes was the average size of a spliced alignment
$ 43272 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1664 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 321 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 01:20:19
-->
