<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:19:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540433" ref_strand="+" ref_description="SGN-E540433 [TUS-60-L9](-)">
      <seq>gctgctattaatatgatgcgtgatgcagaaactgagattacaaccgatgacttgatacaagctgcacaaattgaagaacgaggaatgcttgaccggaaggagagaagccctgagatgtggaagcaagtggctattaatgaagcagcaatggctgtggtggcagtgaacttcccagatcttagaaatattgagtttctcactgttgctccaagggctggaagagatctgggttatgtgcggatgaaaatggatcacgtcaaatttaaggaaggaatgttgagccggcagtcgctgttggatcatatcactgttcagatagcaccacgtgctgctgatgagctctggtatggagagcaccagttcagtacaatatgggctgagactgcagataatgcgaggtcagcggctcggacttttgttcttggtggtctgtctgataaacattatggtttgtctgacttctgggttgcagataggataaatgacattgattccgaggcacttcacgtattacatatgtgctatgatcgtgcaaaagagatccttcatcaaaatcgaaaccttatggatgcagttgtcgatatactagttgagaaaaaaagtcttactaaggagggattctttaaactagttgagctacatgggtcccttcaaccaatgcctcccagtgtagttgatctcaggtctgctaaacgcttggagttccaggacacgctcacaaagcataaggaaattatttctcaaggacgcaactgagcaaggtatttggtattgtgatgtgatcattacttaaccatgagcctctgtgctcttgtactcgtgctcacctccttcagttgtggtgcaatgtgaactcgagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="1" stop="8883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154" g_stop="189" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="190" i_stop="700" i_length="511">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="701" g_stop="859" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="195" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="860" i_stop="1979" i_length="1120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1980" g_stop="2065" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="281" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2066" i_stop="2426" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2427" g_stop="2505" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="360" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2506" i_stop="7662" i_length="5157">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7663" g_stop="7785" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="483" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7786" i_stop="8079" i_length="294">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8080" g_stop="8136" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="540" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8137" i_stop="8262" i_length="126">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8263" g_stop="8586" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="862" r_length="322" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E540433" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154" e_stop="189"/>
          <exon e_start="701" e_stop="859"/>
          <exon e_start="1980" e_stop="2065"/>
          <exon e_start="2427" e_stop="2505"/>
          <exon e_start="7663" e_stop="7785"/>
          <exon e_start="8080" e_stop="8136"/>
          <exon e_start="8263" e_stop="8586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTATTAATATGATGCGTGATGCAAGAACTGAGGTAATAGCTTCTGGTTTACTCTGGGTCAAAAAAAAATTCTAACCTTGTAAATAAATTAAGCAATATATGTCGATAGTTGTTAACTTGATATTGACTGTACAGATAGATTTTTTGGCGTAGTCCTTAAGAAGCGTTAGGTCTTCTAAATCTGAGCTCTTATGTATTACACATGTGACATAAGAAAAACTTTCTTAATTGTTGCTTCCAATATGATGCCCTTTTAAGGCGGAGAAGTGGGTGGGTTAATGTTGCTGAATGGCCTCAAAATATAATTCAAATATCATTGTTGAGAGGCCCCCCATTCCCCCCAGGAAAAAAAAATGTATGCTGGAATTTTCTTCTGGATTTATCATGACAAAGATGAAATTCTGGTCTCCATCTATCACTGAACACTTTGCCAAATACTTACCTAAAATGGGTCTTCCAGACCTACAGTTCACTTCTCCATTATGTGCTCTTCCGCTACCAGACTTGGTTAAGTTTGTATAACCTTAGAGTTTGGACTTTGCAGATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTTGTAATAATTTTCACTCTTCTCTATTTTGTTACTGTCTGTTTTGTCGTTGTTGTTTTATGGTATTACAGTTTGGTGAAGTATCCTTATTGAGTTAGCAATCATGTTGATGTTTACCCTACTTCTTTTCACTCGGTTCGATTTCCAATAGTACCCAAATATGCATTTTGTTTCTAACAGATGCTTGCATCATATCTACAATAAAGGCTTAATATCTGTTGTTCCACTTGAATTTTTGTCTTAGGATAACTCCTAGGGAACCTGTACAAAATTTTGGCTTATTTCCTAATTATTCAGTGTTGGTGGCGTATCATGTCATGATATTACCTTGTCAAGAATTAGCAAGTTCTGGTGTTATGTTTATTGTTTAGATATTGAACATCATGAGAAAAGTGCAATGTGTGATTGCTATCATCTTGCACACAGTAGTTGCCTGTTTGAAAGTTTGATGAAGTAGTTGCAATCATGCTCAAATGTTAAATTTATGATACTTTTTCCCTATACAATATACATGGATACTAGTTTTATAATTTAGATTAATTACTAAAATCTCAACCTGAGTTAACCATGTGTTAAAGTGAAGCAATACCTGTCTGGTAAAATACGACTTGTTAGAGTGGAATTGGTCAGTTAGGAATAAGTAGAGACTTGATGAAAGATCAATCAGTGTATGTTCTTCCTGACTTCTGATTTCTCATTTTTTTTATGTAGATCTCCATGTAATTTAACCATGTGTTAAACAAAGTAAGCTGTACACATTTAATAGAATATGACTTGTTACAAAGGAGCTTTGGAGTACGGGTAGGAAATAGAACTTGGATTGGTTAGGAGAAATTTGATGAAAGAACAATCAGTGTTTGTCCTACTTCCTGAATTCTGATTTCTCATGCCTTATGCTTGACAATATAGGGAAAAAAGACTCGTGCCATTTGTTTATGCAAGTATCTTTTTCTTTTTCTTCCAAAGTGCATTGAGTTCTTATTTTTATACTTTGTAAAAAAGGTGTTATCAGCATCATTACAATTGATGATTTAGTTAAACCCATTTTTACTTAGTAATACAGCATGATCTTTTTTCGTAGTGCCATTTTATGATTTTTTTTTAAATGTTTCTTTTTGATAAGCTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAGGCACGGCTTCTATTCCCTTCATTTTACATTTATATTTCTTTATTCTTTTAAAACTAAAGTATTGGAAATCTAATGAACAAGTTATGCTAGTGTATATGTAATGGTACTAATAAATGAGGGTGTTTCAAACTTCTAATCAGGTATTTCCTCAAGCGATATGAGGAAATATATGTGTAGACACCACAGAGAAAGAAGTATTTGCCTTTTTGAAATACCTCACTGTCTGTTGGTCTTACTTCCCATAAGCAATTTGGAAAATACGACCACCTCTTGCTTTTCGAGCCACTACCGTCAGATGTCAAAGAAAAAAAATTTCCTGATTATAGGCATCTGTAACTTTTGACGCTTCATTTTAATGCAGCCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAGGTAAGATATGCAGGAACTTTAAATTTTAGTTTTGCATCATTTGTCACCTACCATTTAAATAACTTGAAAGGGATCCATGCTGCTGTTGTTGGAGTCTTAAAAGATTATAATGAAATATAATCTAATAGGTATCATGAAGCAAATCGATCGCCATTTGGACACAGACACATATCTTGTGTCCAACATGAAATAGACATACAAACATAAATATGCATAAGGGACATTATATGTAGTTTGGTCCTTTGGGAATAAATCTATTGATATGTAATTGGCCCAATTAACTCGGGAGACAGACTTCAGATGTTAATTTGACAGTATGCTACATTATTCTCATAGCTTAATAACTGGGCAAACATTTCTTCTGCATATTTGGAGAGACATTTTAAATGTCACTTGAGTATTTAAATGATCAATGAGACGTTACATCCCTTTTTGTATGAAATTAGGACCTAAAGATACATTTGTGGTTTAAGCCTTTAAGGTAGTATTTAAATAAAGAAGAGGAGCAAAAATAATGGAAGGTGGTTCAGTGGGTTGTTTCCAAATTATTTCCAGGATACATTACATTTTCCACTTTCATCTTTTGTTCTAGATTGAAATAAGTCCACCCGCTGTCCGGTGCCTGGAAGCGCTCCCTACCAAGATTTTTTTATAATTTCCCAGGGCATCCTAATTTATCCGACCGCAACCCTTAGTGGTGAAAATAAGTAATATGGTGTTCTCAGCAAAAAATTCTCATCCAAAAATTTGCATTTTCTCAAAAAGTGGAGAACTAATTTAGAACCATCTTCACTAAATCAATCAGTTCTCCTAAATCAAAAGATTAGTTGGTTCGATATTAATCTGTTATTTGTAGTTTTGATGATATGACAAACTCAGGGACCTTGTAAAGGTACCAGGTTTTCTACTTGAGTTTTGATGATGACAAACAATACTCAGGCACCACTCCAGCTTTGTTCCCCCTCACACACAACTCAGCCACTTACCAGTTATACTTCCCCCTTTTGGCATCATAAAAAAGAGATACAGTAAACCAATGATGTCAACAGTAATATCAGATAAGATCAAAGCTTGATAGCAATCAAACAGAAGGGAAAAAGCATTCGCAATAGATAATAATTAGAACACCAGGGGAATAAGATAAATAGCATTCCAAGATAACATTTAGTACATTAAAAACAAACTGAGAATCCAACGACACAAAGACAAGCCACACAAAGAAGACACAGGAAATGATTGGGAAGACTAAGAAGGGGGAGGTTGATGAGAAAGGGACTGAATAATGAGAGTGAGTCGATCATTTGCAGCATCCTTTTCTTGCAAGGCAATAACCTTGGCCCTCAGCTCTGCATTTTCCCTTTTCAGGGCTTGAACCACAGAAGTACCAGGTCCCTCAGTTTGTGCAGTGAGTAGTTCAGCTTTGAGTATAGCAATTTCATCATCTTTTCCACTCAAACGCACAGTTAATGTCCTCAACCTCATGCTTGAGTTGATCCTGATTGTCTATGAGTTGAGCCATCTTGCTCTTGGGATTGCCTTTCCCTTCGATACACTCACATTCGATCAGGGTACTCTCTGAAAAGGTTTGCTACACAGTCCCATCCCTGCCAACGCTCAAAGGAATTTTAAAATGTTTGAATACTTTAGTAAGAAAGTATCCGTATCCCATCCCATGAATTCCTTTCCTCTCAATGACAGTCTTGTACATGTGCTCAAGCATAAGCCCTAGGAGATTCAGAAGTTCAAATCTGCACAACTTCTCCATCACAAATAAATCAGCAGATGTAGTTGAAGTTCTTTTTTTCAGTCCGAGGAAGGAGAGTTTTGTTTACAACTCGAACACCAACTGATACTCGCTCTTCATCACCTTCTTAAAAATCCGAGCAACTTCTGTTGTAGGAAGCTTCGAAACCAAGGACACGAACTCAACCGAACAAGTTTTTCCAATCACAGACCTGGTGCCCTCTCTAGGTACCCTGAGAATTTTGCCCAGCAGAAACTCATCCAGATGCACTGCAATATCATTTACTCTTGTAAGGATACTCCCATCTTTCTTAAATTGAATGTTGTAGTAGAATTCACGCACTTCCTCTTCGTGAAGGATAGGAGATTTCCTGTTGAATAGATGCATCCATGACTGAATTTCCACCATATTATGGAGAGAGTCCATGCCGGGAAGATTGATTATTCCCATGTCAAAGACTCTTCCAGCCAGCACAGCCTGCGTTCTCAAGTTGTCAACAATTTCTTGCATGTTGACCTCTTCTTCACTCCTTTGTTGGGTACCAGGTCCCTGTGTTCTTTTTCGTTTTCCTGTAGAACTCTTCTTCGTGGGTTTTGCTTTCTCAACCCTTTTTGGATCCCTTGACTTTGTTTTTCCTGACTTTTTCTTCTTGGTTTCTTGTCCATTTCTTCGGCAGACACCTCTATGACACTAGATTCAGGCATTCTAAAGTTTCATACTTTAAATGTTCTGGCACTCCTGATTTCAGCCGTAGATCTTGCACTAGCCTTTAAGGCATCAGTCATCAACTTCCTAGCATCAGACCTAGTAGGAGGTTTTCTTCTAGGAGCCTCTTCCACTACCTTTTCTTTTCCCTTTCTAGACACCCCAACCTCCCTTCTTTCAACCTTCCATTTAATGGGTTACTCATCACTTTCAGAATCTGAGGAGACACTCAACCTAGGAGACACTCTACTACCTTTTCTTTTCGCTTTCTTGACACCCCAACATCCCTCTCAACCTTCCATTTGATGGGTTCCTCATCACTTGCAGAAGGATACCTCCCAAAATTTGGAAAGTGTAACCAAAACCGCCATAAGCAGTGCCACTTTCTTAATAGAAATTTTGATATATATACTAATCTATCAATAGACCTATTTCACGCAACTTATTTGAACCTGAGGTGGCTTTGTGATATTATTATGCAACATGCTGCTTTGGAATTTGAGTCTCACACCCAAATGTCAATGCACATATATGCCCACATATGCCACTCGTCCCAACTACCCACCCACTGAGTGCAGTTACCTGTTCATTCTGGCATTCTAGGTGTCAACTAGTACTTGTACTACTGTACATGAAATGTTTCACTAGGCCTTCTTTTTTTTCCGAGAAGGTATGTTTCATTTGCCCTATATTTATTCAAGTTCCAACTACTTGCTGTTACTATGCATAAAAAAGTAGTTATATTAGGATAAGATTGGCTATTCTTTTATTTTCCTGCTCTTATTTTCAATACATAGGAGCATATGTGTATTAATGAATCCGAAGCCAAAACGGTAACTTTTCCCCTCAAACAAAATAAACGGTATATCAAAAAAAAATTAAACCAAAAGGGCAAAATCGCTCTTGAGAGAGCAATGTTTCGAACAAAATTAACACTGCTTACGCGTCGATTAAAATCGCTGCTAGGGCAGTGATTTTGTCAAAAAAAAACATTTTTTTTAAAATACTGAAATCGCGGCCCATGCAGCGTTTTTCCTCAAACCTTTTTTTTTTGAAAAACTGAAATCTCCTTAAACTTTTTATTTTGTTTTTGAAAAACTATAATTGCCGCCAGCGATTTCCCTCAATTCTTTTTTTAATTGTTGCTTATTGATTTATAAAAAAAAAAGTTCAAATAAATTTTACGGGATTTTGCCCTCCTTTGTGATGAATCTCATTGTATTTTGCCACCTAGTTGATCCATGAAAACTGCAGACTTAGCCAACAATACTACAGGCACAATTAAAAAGAAAACAAATTGAGGAAAATCGCTGCTTGTGCAAAGAAAACAAATTGAGGGAAATCGCTGCCCGATTTCAGTTTTTCAAAAAAAAAATTGAGAAAAAAACGCTGCCCATGCAGGGATTTCATTTTATTTATTTTTTTTTGACAAAATCGCTATTTCAGTAGCGATTTTAATCTTTGTTCGGAAGACTTCGCTCCCGCAAGAGCGATTTTACCCTTTTGGTATAATTTTCTTTTGATATACCGTTTGTCTTTTTTAGGAAAAAAGTTACCGTTTTGGCTTTGGACTCGTGTATTAATCATCTTTACTAATTTAAACATGTCATCCAGAGGATTTTCACTCTTTTCATTTCAGCTTTGAAAACCTCTGAGGATACTGTATATGGAGAAGACTTCTGAACAGCTGCTAAATGTCTCTTGCTAGCACCAGAAACGCGTGAGATTAACATATGAATTATAAGACTGTCTATATAAATGTATGGGCAGGTGTTCCTTCGCATACTTACTGTGTACAATGTTAACACGTGATACTATACATCCTTTCACTTTTTGATGACAAAGGAAACCCGGAGCCGCTACTCTTTGGGTCAGGGTAAAACCCCCGCTCCTATGCAATAGCTCACAAACCACGTAGGAGAGGTAACCCGCACTAGGCAAGCTTGGTGCGACGAGCTCGACCCAGAAGACAAATCCCTTGCTTTCGCTAGTAAGGGGTTTCGAGATTCTATACATCCTTTCAGAAGTTCCCGTGCATTAGTTATTTTACAACTAATGTCTCTTACTAGCATCAGAGACGCGGGAGATTAACATATGGATTTTTATTTTTTTATAAAGTAAGTGGTATTAATAACAGCATCAAGAAGATGCTAGAATTACAAGATATGGCATTTGAGTTTATAAAAAAATCTCTGGCTAACTATAAAAACTATCTAAGCCAGAACTAGTGAGTTAATAAACTCCTGAAGTTGTTCTGCATTAGCAGCAGGATACAAGTTTGACCAACTAAACAAATTGGCAATACACCTAGCCTTCAAAATGCCTAAAGCAGCTGACTCTCCATCAAAACATCTCCTGTTCCTCTCTAACTAAATACGCCAGATTCACATATGAAGTATAAGACCTGCCTATGTAAATGTATGGGCAGGCTTTCCTTTGTGTGTACTTACTGTGTACAATGTTAAACACGTGACTTTTCTATACTTTCTTCTAGAAGTTTCCATGCATTAGTTATGTGGATCTCTATCCCTATCCCTACCCTTACCCTTTCCTAGTTAAGATTTACCATGATATATTATCCAGCACCTTGAATAATAGCAGTGAACACATTATTTGTATCAAACTCTAACCTAGGAAGTTAATATGCTTTTTCATGATATAAAGTCCATTTAGGCGACAATGTCTCTAATACATGTAAAATATTTCAGTTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAATGTAAGATTTCACTATCTTCACCCCTCACTTCAGTTATTTATCATTTCTCCTTCCTCATTCATCAAGGTTTTTTAAAGGTAATTTTTAGCAGAAGTATATCTTTCCTCTTCCAGAAGTACGAATATTTCATTGGTATGCCGCTGGTAGAGTTTCAAATATGTTTCTAAAATTAAAAAAAGATCCCGTCTCTTTTCTTTTGGGTTGCCTTCCCCTTGGCACTTCACTCAATCTATATTTTCTAAATTGATGTGTCTTGCGTGCCACCTGAATTCCAAAATATATTTTGCTTGTCAGGACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAGGTATCATTAGAAATCATGTCTCCTCTCTATCCTGGTCTGAGCGGAAAGAAAAGTGAAGATAGTGTGAGTTATGAAATTGCATGCTACTTGGGTTTTCACTAATGCAATCTTGAAATGACTGTACAGATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAGAAAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAGGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAGGTATTTGGTATTGTGATGTGATCATTACTTAACCATGAGCCTCTGTGCTCTTGTACTCGTGCTCACCTCCTTCAGTTGTTGGTGCAATGTGAACTCGAGTCT</genome_strand>
        <mrna_strand>GCTGCTATTAATATGATGCGTGATGCAGAAACTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................CCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAAT......................................................................................................................................................................................................................................................................................................GACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAG..............................................................................................................................ATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAG-AAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAGGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAGGTATTTGGTATTGTGATGTGATCATTACTTAACCATGAGCCTCTGTGCTCTTGTACTCGTGCTCACCTCCTTCAGTTG-TGGTGCAATGTGAACTCGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322904" ref_strand="+" ref_description="SGN-E322904 [cTOB-30-I11]">
      <seq>aagaactgagattacaaccgatgacttgatacaagctgcacaaattgaagaacgaggaatgcttgaccggaaggagagaagccctgagatgtggaagcaagtggctattaatgaagcagcaatggctgtggtggcagtgaacttcccagatcttagaaatattgagtttctcactgttgctccaagggctggaagagatctgggttatgtgcggatgaaaatggatcacgtcaaatttaaggaaggaatgttgagccggcagtcgctgttggatcatatcactgttcagatagcaccacgtgctgctgatgagctctggtatggagagcaccagttcagtacaatatgggctgagactgcagataatgcgaggtcagcggctcggacttttgttcttggtggtctgtctgatanacattatggtttgtctgacttctgggttgcagataggataaatgacattgattccgagncacttcacgtattacatatgtgctatgatcgtgcaaaagagatccttcatcaaaatcgaaaccttatgggatgcagttgtcgatatactagttgagaaaaaaagtcttactaaagagggattctttaaactagttgagctacatgggtccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="396" stop="8674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="701" g_stop="859" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="169" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="860" i_stop="1979" i_length="1120">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1980" g_stop="2065" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="255" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2066" i_stop="2426" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2427" g_stop="2505" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="334" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2506" i_stop="7662" i_length="5157">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7663" g_stop="7785" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="457" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7786" i_stop="8079" i_length="294">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8080" g_stop="8136" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8137" i_stop="8262" i_length="126">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8263" g_stop="8374" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="626" r_length="112" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E322904" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="701" e_stop="859"/>
          <exon e_start="1980" e_stop="2065"/>
          <exon e_start="2427" e_stop="2505"/>
          <exon e_start="7663" e_stop="7785"/>
          <exon e_start="8080" e_stop="8136"/>
          <exon e_start="8263" e_stop="8374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTTGTAATAATTTTCACTCTTCTCTATTTTGTTACTGTCTGTTTTGTCGTTGTTGTTTTATGGTATTACAGTTTGGTGAAGTATCCTTATTGAGTTAGCAATCATGTTGATGTTTACCCTACTTCTTTTCACTCGGTTCGATTTCCAATAGTACCCAAATATGCATTTTGTTTCTAACAGATGCTTGCATCATATCTACAATAAAGGCTTAATATCTGTTGTTCCACTTGAATTTTTGTCTTAGGATAACTCCTAGGGAACCTGTACAAAATTTTGGCTTATTTCCTAATTATTCAGTGTTGGTGGCGTATCATGTCATGATATTACCTTGTCAAGAATTAGCAAGTTCTGGTGTTATGTTTATTGTTTAGATATTGAACATCATGAGAAAAGTGCAATGTGTGATTGCTATCATCTTGCACACAGTAGTTGCCTGTTTGAAAGTTTGATGAAGTAGTTGCAATCATGCTCAAATGTTAAATTTATGATACTTTTTCCCTATACAATATACATGGATACTAGTTTTATAATTTAGATTAATTACTAAAATCTCAACCTGAGTTAACCATGTGTTAAAGTGAAGCAATACCTGTCTGGTAAAATACGACTTGTTAGAGTGGAATTGGTCAGTTAGGAATAAGTAGAGACTTGATGAAAGATCAATCAGTGTATGTTCTTCCTGACTTCTGATTTCTCATTTTTTTTATGTAGATCTCCATGTAATTTAACCATGTGTTAAACAAAGTAAGCTGTACACATTTAATAGAATATGACTTGTTACAAAGGAGCTTTGGAGTACGGGTAGGAAATAGAACTTGGATTGGTTAGGAGAAATTTGATGAAAGAACAATCAGTGTTTGTCCTACTTCCTGAATTCTGATTTCTCATGCCTTATGCTTGACAATATAGGGAAAAAAGACTCGTGCCATTTGTTTATGCAAGTATCTTTTTCTTTTTCTTCCAAAGTGCATTGAGTTCTTATTTTTATACTTTGTAAAAAAGGTGTTATCAGCATCATTACAATTGATGATTTAGTTAAACCCATTTTTACTTAGTAATACAGCATGATCTTTTTTCGTAGTGCCATTTTATGATTTTTTTTTAAATGTTTCTTTTTGATAAGCTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAGGCACGGCTTCTATTCCCTTCATTTTACATTTATATTTCTTTATTCTTTTAAAACTAAAGTATTGGAAATCTAATGAACAAGTTATGCTAGTGTATATGTAATGGTACTAATAAATGAGGGTGTTTCAAACTTCTAATCAGGTATTTCCTCAAGCGATATGAGGAAATATATGTGTAGACACCACAGAGAAAGAAGTATTTGCCTTTTTGAAATACCTCACTGTCTGTTGGTCTTACTTCCCATAAGCAATTTGGAAAATACGACCACCTCTTGCTTTTCGAGCCACTACCGTCAGATGTCAAAGAAAAAAAATTTCCTGATTATAGGCATCTGTAACTTTTGACGCTTCATTTTAATGCAGCCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAGGTAAGATATGCAGGAACTTTAAATTTTAGTTTTGCATCATTTGTCACCTACCATTTAAATAACTTGAAAGGGATCCATGCTGCTGTTGTTGGAGTCTTAAAAGATTATAATGAAATATAATCTAATAGGTATCATGAAGCAAATCGATCGCCATTTGGACACAGACACATATCTTGTGTCCAACATGAAATAGACATACAAACATAAATATGCATAAGGGACATTATATGTAGTTTGGTCCTTTGGGAATAAATCTATTGATATGTAATTGGCCCAATTAACTCGGGAGACAGACTTCAGATGTTAATTTGACAGTATGCTACATTATTCTCATAGCTTAATAACTGGGCAAACATTTCTTCTGCATATTTGGAGAGACATTTTAAATGTCACTTGAGTATTTAAATGATCAATGAGACGTTACATCCCTTTTTGTATGAAATTAGGACCTAAAGATACATTTGTGGTTTAAGCCTTTAAGGTAGTATTTAAATAAAGAAGAGGAGCAAAAATAATGGAAGGTGGTTCAGTGGGTTGTTTCCAAATTATTTCCAGGATACATTACATTTTCCACTTTCATCTTTTGTTCTAGATTGAAATAAGTCCACCCGCTGTCCGGTGCCTGGAAGCGCTCCCTACCAAGATTTTTTTATAATTTCCCAGGGCATCCTAATTTATCCGACCGCAACCCTTAGTGGTGAAAATAAGTAATATGGTGTTCTCAGCAAAAAATTCTCATCCAAAAATTTGCATTTTCTCAAAAAGTGGAGAACTAATTTAGAACCATCTTCACTAAATCAATCAGTTCTCCTAAATCAAAAGATTAGTTGGTTCGATATTAATCTGTTATTTGTAGTTTTGATGATATGACAAACTCAGGGACCTTGTAAAGGTACCAGGTTTTCTACTTGAGTTTTGATGATGACAAACAATACTCAGGCACCACTCCAGCTTTGTTCCCCCTCACACACAACTCAGCCACTTACCAGTTATACTTCCCCCTTTTGGCATCATAAAAAAGAGATACAGTAAACCAATGATGTCAACAGTAATATCAGATAAGATCAAAGCTTGATAGCAATCAAACAGAAGGGAAAAAGCATTCGCAATAGATAATAATTAGAACACCAGGGGAATAAGATAAATAGCATTCCAAGATAACATTTAGTACATTAAAAACAAACTGAGAATCCAACGACACAAAGACAAGCCACACAAAGAAGACACAGGAAATGATTGGGAAGACTAAGAAGGGGGAGGTTGATGAGAAAGGGACTGAATAATGAGAGTGAGTCGATCATTTGCAGCATCCTTTTCTTGCAAGGCAATAACCTTGGCCCTCAGCTCTGCATTTTCCCTTTTCAGGGCTTGAACCACAGAAGTACCAGGTCCCTCAGTTTGTGCAGTGAGTAGTTCAGCTTTGAGTATAGCAATTTCATCATCTTTTCCACTCAAACGCACAGTTAATGTCCTCAACCTCATGCTTGAGTTGATCCTGATTGTCTATGAGTTGAGCCATCTTGCTCTTGGGATTGCCTTTCCCTTCGATACACTCACATTCGATCAGGGTACTCTCTGAAAAGGTTTGCTACACAGTCCCATCCCTGCCAACGCTCAAAGGAATTTTAAAATGTTTGAATACTTTAGTAAGAAAGTATCCGTATCCCATCCCATGAATTCCTTTCCTCTCAATGACAGTCTTGTACATGTGCTCAAGCATAAGCCCTAGGAGATTCAGAAGTTCAAATCTGCACAACTTCTCCATCACAAATAAATCAGCAGATGTAGTTGAAGTTCTTTTTTTCAGTCCGAGGAAGGAGAGTTTTGTTTACAACTCGAACACCAACTGATACTCGCTCTTCATCACCTTCTTAAAAATCCGAGCAACTTCTGTTGTAGGAAGCTTCGAAACCAAGGACACGAACTCAACCGAACAAGTTTTTCCAATCACAGACCTGGTGCCCTCTCTAGGTACCCTGAGAATTTTGCCCAGCAGAAACTCATCCAGATGCACTGCAATATCATTTACTCTTGTAAGGATACTCCCATCTTTCTTAAATTGAATGTTGTAGTAGAATTCACGCACTTCCTCTTCGTGAAGGATAGGAGATTTCCTGTTGAATAGATGCATCCATGACTGAATTTCCACCATATTATGGAGAGAGTCCATGCCGGGAAGATTGATTATTCCCATGTCAAAGACTCTTCCAGCCAGCACAGCCTGCGTTCTCAAGTTGTCAACAATTTCTTGCATGTTGACCTCTTCTTCACTCCTTTGTTGGGTACCAGGTCCCTGTGTTCTTTTTCGTTTTCCTGTAGAACTCTTCTTCGTGGGTTTTGCTTTCTCAACCCTTTTTGGATCCCTTGACTTTGTTTTTCCTGACTTTTTCTTCTTGGTTTCTTGTCCATTTCTTCGGCAGACACCTCTATGACACTAGATTCAGGCATTCTAAAGTTTCATACTTTAAATGTTCTGGCACTCCTGATTTCAGCCGTAGATCTTGCACTAGCCTTTAAGGCATCAGTCATCAACTTCCTAGCATCAGACCTAGTAGGAGGTTTTCTTCTAGGAGCCTCTTCCACTACCTTTTCTTTTCCCTTTCTAGACACCCCAACCTCCCTTCTTTCAACCTTCCATTTAATGGGTTACTCATCACTTTCAGAATCTGAGGAGACACTCAACCTAGGAGACACTCTACTACCTTTTCTTTTCGCTTTCTTGACACCCCAACATCCCTCTCAACCTTCCATTTGATGGGTTCCTCATCACTTGCAGAAGGATACCTCCCAAAATTTGGAAAGTGTAACCAAAACCGCCATAAGCAGTGCCACTTTCTTAATAGAAATTTTGATATATATACTAATCTATCAATAGACCTATTTCACGCAACTTATTTGAACCTGAGGTGGCTTTGTGATATTATTATGCAACATGCTGCTTTGGAATTTGAGTCTCACACCCAAATGTCAATGCACATATATGCCCACATATGCCACTCGTCCCAACTACCCACCCACTGAGTGCAGTTACCTGTTCATTCTGGCATTCTAGGTGTCAACTAGTACTTGTACTACTGTACATGAAATGTTTCACTAGGCCTTCTTTTTTTTCCGAGAAGGTATGTTTCATTTGCCCTATATTTATTCAAGTTCCAACTACTTGCTGTTACTATGCATAAAAAAGTAGTTATATTAGGATAAGATTGGCTATTCTTTTATTTTCCTGCTCTTATTTTCAATACATAGGAGCATATGTGTATTAATGAATCCGAAGCCAAAACGGTAACTTTTCCCCTCAAACAAAATAAACGGTATATCAAAAAAAAATTAAACCAAAAGGGCAAAATCGCTCTTGAGAGAGCAATGTTTCGAACAAAATTAACACTGCTTACGCGTCGATTAAAATCGCTGCTAGGGCAGTGATTTTGTCAAAAAAAAACATTTTTTTTAAAATACTGAAATCGCGGCCCATGCAGCGTTTTTCCTCAAACCTTTTTTTTTTGAAAAACTGAAATCTCCTTAAACTTTTTATTTTGTTTTTGAAAAACTATAATTGCCGCCAGCGATTTCCCTCAATTCTTTTTTTAATTGTTGCTTATTGATTTATAAAAAAAAAAGTTCAAATAAATTTTACGGGATTTTGCCCTCCTTTGTGATGAATCTCATTGTATTTTGCCACCTAGTTGATCCATGAAAACTGCAGACTTAGCCAACAATACTACAGGCACAATTAAAAAGAAAACAAATTGAGGAAAATCGCTGCTTGTGCAAAGAAAACAAATTGAGGGAAATCGCTGCCCGATTTCAGTTTTTCAAAAAAAAAATTGAGAAAAAAACGCTGCCCATGCAGGGATTTCATTTTATTTATTTTTTTTTGACAAAATCGCTATTTCAGTAGCGATTTTAATCTTTGTTCGGAAGACTTCGCTCCCGCAAGAGCGATTTTACCCTTTTGGTATAATTTTCTTTTGATATACCGTTTGTCTTTTTTAGGAAAAAAGTTACCGTTTTGGCTTTGGACTCGTGTATTAATCATCTTTACTAATTTAAACATGTCATCCAGAGGATTTTCACTCTTTTCATTTCAGCTTTGAAAACCTCTGAGGATACTGTATATGGAGAAGACTTCTGAACAGCTGCTAAATGTCTCTTGCTAGCACCAGAAACGCGTGAGATTAACATATGAATTATAAGACTGTCTATATAAATGTATGGGCAGGTGTTCCTTCGCATACTTACTGTGTACAATGTTAACACGTGATACTATACATCCTTTCACTTTTTGATGACAAAGGAAACCCGGAGCCGCTACTCTTTGGGTCAGGGTAAAACCCCCGCTCCTATGCAATAGCTCACAAACCACGTAGGAGAGGTAACCCGCACTAGGCAAGCTTGGTGCGACGAGCTCGACCCAGAAGACAAATCCCTTGCTTTCGCTAGTAAGGGGTTTCGAGATTCTATACATCCTTTCAGAAGTTCCCGTGCATTAGTTATTTTACAACTAATGTCTCTTACTAGCATCAGAGACGCGGGAGATTAACATATGGATTTTTATTTTTTTATAAAGTAAGTGGTATTAATAACAGCATCAAGAAGATGCTAGAATTACAAGATATGGCATTTGAGTTTATAAAAAAATCTCTGGCTAACTATAAAAACTATCTAAGCCAGAACTAGTGAGTTAATAAACTCCTGAAGTTGTTCTGCATTAGCAGCAGGATACAAGTTTGACCAACTAAACAAATTGGCAATACACCTAGCCTTCAAAATGCCTAAAGCAGCTGACTCTCCATCAAAACATCTCCTGTTCCTCTCTAACTAAATACGCCAGATTCACATATGAAGTATAAGACCTGCCTATGTAAATGTATGGGCAGGCTTTCCTTTGTGTGTACTTACTGTGTACAATGTTAAACACGTGACTTTTCTATACTTTCTTCTAGAAGTTTCCATGCATTAGTTATGTGGATCTCTATCCCTATCCCTACCCTTACCCTTTCCTAGTTAAGATTTACCATGATATATTATCCAGCACCTTGAATAATAGCAGTGAACACATTATTTGTATCAAACTCTAACCTAGGAAGTTAATATGCTTTTTCATGATATAAAGTCCATTTAGGCGACAATGTCTCTAATACATGTAAAATATTTCAGTTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAATGTAAGATTTCACTATCTTCACCCCTCACTTCAGTTATTTATCATTTCTCCTTCCTCATTCATCAAGGTTTTTTAAAGGTAATTTTTAGCAGAAGTATATCTTTCCTCTTCCAGAAGTACGAATATTTCATTGGTATGCCGCTGGTAGAGTTTCAAATATGTTTCTAAAATTAAAAAAAGATCCCGTCTCTTTTCTTTTGGGTTGCCTTCCCCTTGGCACTTCACTCAATCTATATTTTCTAAATTGATGTGTCTTGCGTGCCACCTGAATTCCAAAATATATTTTGCTTGTCAGGACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAGGTATCATTAGAAATCATGTCTCCTCTCTATCCTGGTCTGAGCGGAAAGAAAAGTGAAGATAGTGTGAGTTATGAAATTGCATGCTACTTGGGTTTTCACTAATGCAATCTTGAAATGACTGTACAGATCCTTCATCAAAATCGAAACCTTAT-GGATGCAGTTGTCGATATACTAGTTGAGAAAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTT</genome_strand>
        <mrna_strand>ATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................CCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATANACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAAT......................................................................................................................................................................................................................................................................................................GACATTGATTCCGAGNCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAG..............................................................................................................................ATCCTTCATCAAAATCGAAACCTTATGGGATGCAGTTGTCGATATACTAGTTGAG-AAAAAAAGTCTTACTAAAGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312868" ref_strand="+" ref_description="SGN-E312868 [cTOA-8-O8]">
      <seq>tgctgatgagctctggtatggagagcaccagttcagtacaatatgggctgagactgcagataatgcgaggtcagcggctcggacttttgttcttggtggtctgtctgataaacattatggtttgtctgacttctgggttgcagataggataaatgacattgattccgaggcacttcacgtattacatatgtgctatgatcgtgcaaaagagatccttcatcaaaatcgaaaccttatggatgcagttgtcgatatactagttgagaaaaaaagtcttactaaggagggattctttaaactagttgagctacatgggtcccttcaaccaatgcctcccagtgtagttgatctcaagtctgctaaacgcttggagttccaggacacgctcacaaagcataaggaaattatttctcaaggacgcaactgagcaagggtatgacttccttagatctaattttgtcttgaagatcctattgaagtggtacaattgtggaagcagaattccaccatctcagattggacagagcagatattgcaagagctctctgaatgtattttaaagcttcaagcgcgaataatgatctcggatatatgaagctataaatgtgtatggaatgcagtgaactccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="2175" stop="9096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2475" g_stop="2505" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2506" i_stop="7662" i_length="5157">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7663" g_stop="7785" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="154" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7786" i_stop="8079" i_length="294">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8080" g_stop="8136" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="211" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8137" i_stop="8262" i_length="126">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8263" g_stop="8484" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="432" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8485" i_stop="8595" i_length="111">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8596" g_stop="8796" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="633" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E312868" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2475" e_stop="2505"/>
          <exon e_start="7663" e_stop="7785"/>
          <exon e_start="8080" e_stop="8136"/>
          <exon e_start="8263" e_stop="8484"/>
          <exon e_start="8596" e_stop="8796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATGAGCTCTGGTATGGAGAGCACCAGGTAAGATATGCAGGAACTTTAAATTTTAGTTTTGCATCATTTGTCACCTACCATTTAAATAACTTGAAAGGGATCCATGCTGCTGTTGTTGGAGTCTTAAAAGATTATAATGAAATATAATCTAATAGGTATCATGAAGCAAATCGATCGCCATTTGGACACAGACACATATCTTGTGTCCAACATGAAATAGACATACAAACATAAATATGCATAAGGGACATTATATGTAGTTTGGTCCTTTGGGAATAAATCTATTGATATGTAATTGGCCCAATTAACTCGGGAGACAGACTTCAGATGTTAATTTGACAGTATGCTACATTATTCTCATAGCTTAATAACTGGGCAAACATTTCTTCTGCATATTTGGAGAGACATTTTAAATGTCACTTGAGTATTTAAATGATCAATGAGACGTTACATCCCTTTTTGTATGAAATTAGGACCTAAAGATACATTTGTGGTTTAAGCCTTTAAGGTAGTATTTAAATAAAGAAGAGGAGCAAAAATAATGGAAGGTGGTTCAGTGGGTTGTTTCCAAATTATTTCCAGGATACATTACATTTTCCACTTTCATCTTTTGTTCTAGATTGAAATAAGTCCACCCGCTGTCCGGTGCCTGGAAGCGCTCCCTACCAAGATTTTTTTATAATTTCCCAGGGCATCCTAATTTATCCGACCGCAACCCTTAGTGGTGAAAATAAGTAATATGGTGTTCTCAGCAAAAAATTCTCATCCAAAAATTTGCATTTTCTCAAAAAGTGGAGAACTAATTTAGAACCATCTTCACTAAATCAATCAGTTCTCCTAAATCAAAAGATTAGTTGGTTCGATATTAATCTGTTATTTGTAGTTTTGATGATATGACAAACTCAGGGACCTTGTAAAGGTACCAGGTTTTCTACTTGAGTTTTGATGATGACAAACAATACTCAGGCACCACTCCAGCTTTGTTCCCCCTCACACACAACTCAGCCACTTACCAGTTATACTTCCCCCTTTTGGCATCATAAAAAAGAGATACAGTAAACCAATGATGTCAACAGTAATATCAGATAAGATCAAAGCTTGATAGCAATCAAACAGAAGGGAAAAAGCATTCGCAATAGATAATAATTAGAACACCAGGGGAATAAGATAAATAGCATTCCAAGATAACATTTAGTACATTAAAAACAAACTGAGAATCCAACGACACAAAGACAAGCCACACAAAGAAGACACAGGAAATGATTGGGAAGACTAAGAAGGGGGAGGTTGATGAGAAAGGGACTGAATAATGAGAGTGAGTCGATCATTTGCAGCATCCTTTTCTTGCAAGGCAATAACCTTGGCCCTCAGCTCTGCATTTTCCCTTTTCAGGGCTTGAACCACAGAAGTACCAGGTCCCTCAGTTTGTGCAGTGAGTAGTTCAGCTTTGAGTATAGCAATTTCATCATCTTTTCCACTCAAACGCACAGTTAATGTCCTCAACCTCATGCTTGAGTTGATCCTGATTGTCTATGAGTTGAGCCATCTTGCTCTTGGGATTGCCTTTCCCTTCGATACACTCACATTCGATCAGGGTACTCTCTGAAAAGGTTTGCTACACAGTCCCATCCCTGCCAACGCTCAAAGGAATTTTAAAATGTTTGAATACTTTAGTAAGAAAGTATCCGTATCCCATCCCATGAATTCCTTTCCTCTCAATGACAGTCTTGTACATGTGCTCAAGCATAAGCCCTAGGAGATTCAGAAGTTCAAATCTGCACAACTTCTCCATCACAAATAAATCAGCAGATGTAGTTGAAGTTCTTTTTTTCAGTCCGAGGAAGGAGAGTTTTGTTTACAACTCGAACACCAACTGATACTCGCTCTTCATCACCTTCTTAAAAATCCGAGCAACTTCTGTTGTAGGAAGCTTCGAAACCAAGGACACGAACTCAACCGAACAAGTTTTTCCAATCACAGACCTGGTGCCCTCTCTAGGTACCCTGAGAATTTTGCCCAGCAGAAACTCATCCAGATGCACTGCAATATCATTTACTCTTGTAAGGATACTCCCATCTTTCTTAAATTGAATGTTGTAGTAGAATTCACGCACTTCCTCTTCGTGAAGGATAGGAGATTTCCTGTTGAATAGATGCATCCATGACTGAATTTCCACCATATTATGGAGAGAGTCCATGCCGGGAAGATTGATTATTCCCATGTCAAAGACTCTTCCAGCCAGCACAGCCTGCGTTCTCAAGTTGTCAACAATTTCTTGCATGTTGACCTCTTCTTCACTCCTTTGTTGGGTACCAGGTCCCTGTGTTCTTTTTCGTTTTCCTGTAGAACTCTTCTTCGTGGGTTTTGCTTTCTCAACCCTTTTTGGATCCCTTGACTTTGTTTTTCCTGACTTTTTCTTCTTGGTTTCTTGTCCATTTCTTCGGCAGACACCTCTATGACACTAGATTCAGGCATTCTAAAGTTTCATACTTTAAATGTTCTGGCACTCCTGATTTCAGCCGTAGATCTTGCACTAGCCTTTAAGGCATCAGTCATCAACTTCCTAGCATCAGACCTAGTAGGAGGTTTTCTTCTAGGAGCCTCTTCCACTACCTTTTCTTTTCCCTTTCTAGACACCCCAACCTCCCTTCTTTCAACCTTCCATTTAATGGGTTACTCATCACTTTCAGAATCTGAGGAGACACTCAACCTAGGAGACACTCTACTACCTTTTCTTTTCGCTTTCTTGACACCCCAACATCCCTCTCAACCTTCCATTTGATGGGTTCCTCATCACTTGCAGAAGGATACCTCCCAAAATTTGGAAAGTGTAACCAAAACCGCCATAAGCAGTGCCACTTTCTTAATAGAAATTTTGATATATATACTAATCTATCAATAGACCTATTTCACGCAACTTATTTGAACCTGAGGTGGCTTTGTGATATTATTATGCAACATGCTGCTTTGGAATTTGAGTCTCACACCCAAATGTCAATGCACATATATGCCCACATATGCCACTCGTCCCAACTACCCACCCACTGAGTGCAGTTACCTGTTCATTCTGGCATTCTAGGTGTCAACTAGTACTTGTACTACTGTACATGAAATGTTTCACTAGGCCTTCTTTTTTTTCCGAGAAGGTATGTTTCATTTGCCCTATATTTATTCAAGTTCCAACTACTTGCTGTTACTATGCATAAAAAAGTAGTTATATTAGGATAAGATTGGCTATTCTTTTATTTTCCTGCTCTTATTTTCAATACATAGGAGCATATGTGTATTAATGAATCCGAAGCCAAAACGGTAACTTTTCCCCTCAAACAAAATAAACGGTATATCAAAAAAAAATTAAACCAAAAGGGCAAAATCGCTCTTGAGAGAGCAATGTTTCGAACAAAATTAACACTGCTTACGCGTCGATTAAAATCGCTGCTAGGGCAGTGATTTTGTCAAAAAAAAACATTTTTTTTAAAATACTGAAATCGCGGCCCATGCAGCGTTTTTCCTCAAACCTTTTTTTTTTGAAAAACTGAAATCTCCTTAAACTTTTTATTTTGTTTTTGAAAAACTATAATTGCCGCCAGCGATTTCCCTCAATTCTTTTTTTAATTGTTGCTTATTGATTTATAAAAAAAAAAGTTCAAATAAATTTTACGGGATTTTGCCCTCCTTTGTGATGAATCTCATTGTATTTTGCCACCTAGTTGATCCATGAAAACTGCAGACTTAGCCAACAATACTACAGGCACAATTAAAAAGAAAACAAATTGAGGAAAATCGCTGCTTGTGCAAAGAAAACAAATTGAGGGAAATCGCTGCCCGATTTCAGTTTTTCAAAAAAAAAATTGAGAAAAAAACGCTGCCCATGCAGGGATTTCATTTTATTTATTTTTTTTTGACAAAATCGCTATTTCAGTAGCGATTTTAATCTTTGTTCGGAAGACTTCGCTCCCGCAAGAGCGATTTTACCCTTTTGGTATAATTTTCTTTTGATATACCGTTTGTCTTTTTTAGGAAAAAAGTTACCGTTTTGGCTTTGGACTCGTGTATTAATCATCTTTACTAATTTAAACATGTCATCCAGAGGATTTTCACTCTTTTCATTTCAGCTTTGAAAACCTCTGAGGATACTGTATATGGAGAAGACTTCTGAACAGCTGCTAAATGTCTCTTGCTAGCACCAGAAACGCGTGAGATTAACATATGAATTATAAGACTGTCTATATAAATGTATGGGCAGGTGTTCCTTCGCATACTTACTGTGTACAATGTTAACACGTGATACTATACATCCTTTCACTTTTTGATGACAAAGGAAACCCGGAGCCGCTACTCTTTGGGTCAGGGTAAAACCCCCGCTCCTATGCAATAGCTCACAAACCACGTAGGAGAGGTAACCCGCACTAGGCAAGCTTGGTGCGACGAGCTCGACCCAGAAGACAAATCCCTTGCTTTCGCTAGTAAGGGGTTTCGAGATTCTATACATCCTTTCAGAAGTTCCCGTGCATTAGTTATTTTACAACTAATGTCTCTTACTAGCATCAGAGACGCGGGAGATTAACATATGGATTTTTATTTTTTTATAAAGTAAGTGGTATTAATAACAGCATCAAGAAGATGCTAGAATTACAAGATATGGCATTTGAGTTTATAAAAAAATCTCTGGCTAACTATAAAAACTATCTAAGCCAGAACTAGTGAGTTAATAAACTCCTGAAGTTGTTCTGCATTAGCAGCAGGATACAAGTTTGACCAACTAAACAAATTGGCAATACACCTAGCCTTCAAAATGCCTAAAGCAGCTGACTCTCCATCAAAACATCTCCTGTTCCTCTCTAACTAAATACGCCAGATTCACATATGAAGTATAAGACCTGCCTATGTAAATGTATGGGCAGGCTTTCCTTTGTGTGTACTTACTGTGTACAATGTTAAACACGTGACTTTTCTATACTTTCTTCTAGAAGTTTCCATGCATTAGTTATGTGGATCTCTATCCCTATCCCTACCCTTACCCTTTCCTAGTTAAGATTTACCATGATATATTATCCAGCACCTTGAATAATAGCAGTGAACACATTATTTGTATCAAACTCTAACCTAGGAAGTTAATATGCTTTTTCATGATATAAAGTCCATTTAGGCGACAATGTCTCTAATACATGTAAAATATTTCAGTTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAATGTAAGATTTCACTATCTTCACCCCTCACTTCAGTTATTTATCATTTCTCCTTCCTCATTCATCAAGGTTTTTTAAAGGTAATTTTTAGCAGAAGTATATCTTTCCTCTTCCAGAAGTACGAATATTTCATTGGTATGCCGCTGGTAGAGTTTCAAATATGTTTCTAAAATTAAAAAAAGATCCCGTCTCTTTTCTTTTGGGTTGCCTTCCCCTTGGCACTTCACTCAATCTATATTTTCTAAATTGATGTGTCTTGCGTGCCACCTGAATTCCAAAATATATTTTGCTTGTCAGGACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAGGTATCATTAGAAATCATGTCTCCTCTCTATCCTGGTCTGAGCGGAAAGAAAAGTGAAGATAGTGTGAGTTATGAAATTGCATGCTACTTGGGTTTTCACTAATGCAATCTTGAAATGACTGTACAGATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAGAAAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAGGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAGGTATTTGGTATTGTGATGTGATCATTACTTAACCATGAGCCTCTGTGCTCTTGTACTCGTGCTCACCTCCTTCAGTTGTTGGTGCAATGTGAACTCGAGTCTACTTTGCAGGGTATGACTTCCTTAGATCTAATTTTGTCTTGAAGATCCTATTGAAGTGGTACAATTGTGGAAGCAGAATTCCACCATCTCAGATTGGACAGAGCAGATATTGCAAGAGCTCTCTGAATGTATTTTAAAGCTTCAAGCGCGAATAATGATCTCGGATATATGAAGCTATAAATGTGTATGGAATGCAGTGAACTCCTTTTT</genome_strand>
        <mrna_strand>TGCTGATGAGCTCTGGTATGGAGAGCACCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAAT......................................................................................................................................................................................................................................................................................................GACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAG..............................................................................................................................ATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAG-AAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAAGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAG...............................................................................................................GGTATGACTTCCTTAGATCTAATTTTGTCTTGAAGATCCTATTGAAGTGGTACAATTGTGGAAGCAGAATTCCACCATCTCAGATTGGACAGAGCAGATATTGCAAGAGCTCTCTGAATGTATTTTAAAGCTTCAAGCGCGAATAATGATCTCGGATATATGAAGCTATAAATGTGTATGGAATGCAGTGAACTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12305" stop="14092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12605" g_stop="12800" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12801" i_stop="13227" i_length="427">
            <donor d_prob="0.846" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13228" g_stop="13797" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="739" r_length="550" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12605" e_stop="12800"/>
          <exon e_start="13228" e_stop="13797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCAC</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGA--TTTTCAAACACTGAAAATTTTCCT-TCTCNGTA-TTATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGA-----AC-------A-A-CAATGC-CAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCT--GTGCTGAATGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262710" ref_strand="+" ref_description="SGN-E262710 [cLEG-63-E14]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12324" stop="13534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12623" g_stop="13234" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E262710" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12623" e_stop="13234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369760" ref_strand="+" ref_description="SGN-E369760 [TUS-25-O3]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12324" stop="13505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12623" g_stop="13205" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E369760" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12623" e_stop="13205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255327" ref_strand="+" ref_description="SGN-E255327 [cLEG-30-E2]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgatttttgaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12324" stop="13442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12623" g_stop="13142" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E255327" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12623" e_stop="13142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTGAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12324" stop="13150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12623" g_stop="12850" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12623" e_stop="12850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12333" stop="19043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12633" g_stop="13036" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12633" e_stop="13036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAACA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGA-TTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254845" ref_strand="+" ref_description="SGN-E254845 [cLEG-33-L11]">
      <seq>aggaagtcaaattttgattttttaaacactgaaaatttggctttcggtgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtaccagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagaataaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagaattgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12354" stop="13550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12654" g_stop="13250" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E254845" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12654" e_stop="13250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTA-CAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTC</genome_strand>
        <mrna_strand>AGGAAGTCAAATTTTGA-TTTTTTAAACACTGAAAATTTGGCTTTCGGTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACCAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGAATAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGAATTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273518" ref_strand="+" ref_description="SGN-E273518 [cLEN-6-E15]">
      <seq>ggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12355" stop="13614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12655" g_stop="13314" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E273518" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12655" e_stop="13314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGC</genome_strand>
        <mrna_strand>GGAAGTCAAATTTTGATTTTT-TAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12388" stop="19008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12688" g_stop="13022" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12688" e_stop="13022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTG-----G-TTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12456" stop="13767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12755" g_stop="13467" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12755" e_stop="13467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12495" stop="13806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12795" g_stop="13506" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12795" e_stop="13506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12496" stop="13736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12796" g_stop="13436" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12796" e_stop="13436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12611" stop="13829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12912" g_stop="13529" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12912" e_stop="13529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTG-----G-TTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375521" ref_strand="+" ref_description="SGN-E375521 [TUS-34-B10]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12611" stop="13405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12912" g_stop="13106" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E375521" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12912" e_stop="13106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAA-ATTTA-ACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12731" stop="14062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13030" g_stop="13741" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13742" i_stop="13813" i_length="72">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13814" g_stop="13835" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="727" r_length="22" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13030" e_stop="13741"/>
          <exon e_start="13814" e_stop="13835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATAATGTTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAG-AAACTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGC-AAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTA-CAAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAA........................................................................GGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12731" stop="13774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13030" g_stop="13474" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13030" e_stop="13474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12764" stop="14211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13064" g_stop="13741" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13742" i_stop="13813" i_length="72">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13814" g_stop="13911" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="772" r_length="98" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13064" e_stop="13741"/>
          <exon e_start="13814" e_stop="13911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATAATGTTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAAACTACTTGAAACACAAACGTAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTA-AAATCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAA-GACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTT-AAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="12944" stop="14226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13244" g_stop="13741" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13742" i_stop="13813" i_length="72">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13814" g_stop="13926" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="608" r_length="112" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13244" e_stop="13741"/>
          <exon e_start="13814" e_stop="13926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATAATGTTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAAACTACTTGAAACACAAACGTAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGA-TTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTT-AAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="13638" stop="14943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13938" g_stop="14643" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13938" e_stop="14643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCGGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGACTAATGAATGCCGGGGTCCTAAAAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGA--TCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGAGAGATTCT-G-GCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAAGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAAATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCC-AAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="13788" stop="14943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14088" g_stop="14643" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="581"/>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14088" e_stop="14643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGACTAATGAATGCCGGGGTCCTAAAAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGA--TCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGAGAGATTCT-G-GCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAAGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAAATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="13812" stop="14943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14112" g_stop="14643" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="556"/>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14112" e_stop="14643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGACTAATGAATGCCGGGGTCCTAAAAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGA--TCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGAGAGATTCT-G-GCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAAGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAAATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="13844" stop="21938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14144" g_stop="14646" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14647" i_stop="15140" i_length="494">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.648" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15141" g_stop="15157" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="524" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14144" e_stop="14646"/>
          <exon e_start="15141" e_stop="15157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGGGTCCTAAAAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATC--TGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGAGAGATTCT-G-GCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAAGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAAATTTTGCTTCTTCTTACTTGCTTGAGTCTAAATGTTATTGGCATGAACGTTTGGGACACGTTAATAACAAAACCTTGCGAAAATTGATCAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCAAAATGTCAAATTTGTGTCGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGAAATTCAAATCCTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAGCAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAATCTTATGGAATTGCAGAAAGAAAAAAATCGAAC</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="18032" stop="18857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18331" g_stop="18557" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18331" e_stop="18557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTTATTTTTTAATCATAGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTAGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545612" ref_strand="+" ref_description="SGN-E545612 [TUS-68-I20]">
      <seq>gctttccaactgaagtccattaacagacttccggcgacacgaagcttgacaactgcaaacggaaggttacgacgatcaacgtctccgacaatgagtgcagggggagcatttggtggaaatagaggactgagaccagtgccacctgaaaaaggagtttttcctttggaccatatgcatttatgtgacctggagaagaaagagtacctcaattgtcttaaatcctctgggcataaatctgacaactgtagacacctctctaaaaagtacctggtgtgccgtatggagaagaacttgatggcaaagcaagacatgtcagaacttggctttggcaagaactatgatgcagaaacttcttcagaggaaatggaacaatagaaaaatgaaagaatggagaagatcgataaattttgttaattctctgggatccttttgagaagcctgggtagaaagttacacatacaagcttcattatcgtcatgtgaaaactttcacagttgcttataggaggtcttctttttctagattaatgcttttttaacctcctttttccctttcttctgaattttgtgtaccttgagagcaaaaatgtatatagaaagagagaaggataaagaaatgctatgataaattacagattggacagctatattcaggctattgttcgttacttgtttcttccnnnnnnnnnnnnnnnnnnann</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="28187" stop="31972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28487" g_stop="28586" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28587" i_stop="29635" i_length="1049">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29725" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29726" i_stop="29903" i_length="178">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29904" g_stop="30001" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30002" i_stop="31279" i_length="1278">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31280" g_stop="31693" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="700" r_length="413" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E545612" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28487" e_stop="28586"/>
          <exon e_start="29636" e_stop="29725"/>
          <exon e_start="29904" e_stop="30001"/>
          <exon e_start="31280" e_stop="31693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAGGTGAATTTACTCTTCTCTCCCATTTCTTTAGGGTTTGTGCTCTCTCAATTTGTATGCATTCATATAGGAACAAATATATACAGTTTGATTTATCTAGCTGACCCGAATTATTTTGGGATTAATAACAAACCATCACAATATACTCAGTGTAATTGGTGTCTGGGGAGCGTAGAATATATGCATACATTACCTCTACCTTCTGAGCAAGTAGAGAAGTTGTTTGTGAAATGGTAAAATTATTTGAGAAATGAATATAGAGGATTTGTATAGCCATTGCAACTAATTTGAGATTGAGACATAATAAGTTTAATAGGTAATGATCATAATTGATCTTCTATACCCTACCAACATTGAAATGATCCTAGAAAATGTCAAATTAAAACATTTTTCTCCACTGAAAACACACTCTATTGTGGGTTCTTTTACAGCCTTCATGGATTAATCATAGAGCAAATGTGTTGGATAAGGTTGAATTATATGACTAATCGATTAATCCGGAGTAATTTGACGATATATTTTCGTGTTTGCTAGATTTATAATGGAAGGATTGTACATGGGTGGCACGGGACCTGTTGTTTTAACTTTGTGGTTTTACATTGTAGATCTTTGACCTTATGAAACAATCTAAACAAGGTAATAAGAATGTTTAGTCAAATGATTGATCATCTGTTTGATGAGTATCAAACTTTTTTTACCTATAAAGTTTAGTTGGCGTGTATTATTATTGTTATATTTGATGACAAAGGAAACCTGTAGCCGCTATCCTTTGGGTGCGCACAGGGTAAAACCAACACTCCTATGCAGTAGCTCGCAAAACACGCAACAGAGATAATTCGCACTATGCAAGCTCGGTGCATCATGTGTTATTTGTATTTTTATGACATTGAGTGTAGATAATTGTTTCCTCACTTGGTGTTTGATTTGATGCAAGTGCCTAGGTGAGGGATCTTTGTACTTTGTGACCCCCCCCCCCCCCCCTTCTCTCTTCTCTTTTGTTACCTATGTCTTGTCACTCGTGTTATACAACTTTTGTCTTCTATTTTATGAAGGGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTGGTATAATATTTCAAAAGATCTCATTATTTATTGATTTTGTTATTGTCTTCTGTTTTCCCTTCCCTTCTTTTAAGATAAAACTGTAAAAGTATAATAGAAAGTTTTTGATAGAGCATCTATTATCTTTTGCAAGGTTCATTCCTTCTTGTTGCTTACTATACTATTTGATTTGTTTTAGGAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAAGTAAGTCCATTGACATGATTTAGTAAACACTTGCACTGTTTAGTTTTTAGTATGCGAAGTTATTCTAGTGTACAGCTTCTGGTAGTCAACAAAGTACTTTCTTGCACTACAATATTGAACCACATACTTTATTCATGAGTTCATACAACTGCCAAGATTGCGAGTTCTGCACAAGGCTTGCCTCTTAATTCTTGTCATGCTTACAGAATTTTAGTTTAAGGTCATCTCCACATTTTCAATATGTTCAAGTTTGTTAAGACTATGCCTTTAAACTTCTATATTTCCTTTTTTTCTTCTTCTGTGGGCACAAGAGTTGAAACTTACCTAATTTTGTTAAGTATGACTAATTACCGGTGTTGATTTCATCTCTTCAATTGATTGGTGTTATTATGCCCTGTCTTTATCCAAAAATTGAAGAATGATGTCCCTTGTGGAGTAGGATGGCAGATTATTTAAAATCAGGACACTTGGTTCTAACAAATGTTACCAATTGGTTCAAATTCAGAACTTTTCTGGTTTTCTGCATGCTTTTCGTCAAATATCTCAAGAAAGCATGTGCACAATAGTGGATGAACAAATGCAACAAGCTGGCATTTTTGCCAAGTTTTTGGTATATTATGGATGGTCTTTAATGAATAACAGCACAAATTGTTTCTAGAAAAGCCATAAATATCATTGCATTTGTAAAGAAATGCAGAAACTAGAAGATAAGGGTTTGACACTCTCTTCAGGGGGATTCAGAAACATATAGTATGGTTCTTTTGGTCTAAGATCAATAGTTATATACAGAACCAAACCAATGAAACTATCTAGGACAAGAACAGGAAGAAAAGCATTCAAGAAAGCGATTTCTCTTTTTTTGCTTGATTGCACCTCTGTTTAGGACCCAAACAAAATGATAAGAGATCTCATAAAAGGCTAATGTCAAATTCCTGCATTTATGGAATTAGGAGAAGAAACCTTCTCCGTCTTTTTCATTTTGCCCTTTTCCTGTATACTATGTTTCTTTGGCATGTTTTATCTCAACAGAGCTTTCGGCTTTTACTTGAAAGAGAAATAGAACTGAAGAGAAATTCACACACTTGTTCCTACAGTATATTGGTGTTTATAGCAAGTAAATGCAAAGTGATGCCTCCTGGCGAAATAGTTTCATCAGATTTGTCTTTTATATCTCCTTGTATTAATTTATCACCTGCTCCTGTAGGTCTACAGCAACTAATGATCCTCTGTAGGAATTTAGGCTGTAAGAAAATGTTTTATGTTATGTTTGTTTTGCAGGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGCTTTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGCTATTGTTCGTTACTTGTTTCTTCCATATCTCTGTTGCTTCAGCAG</genome_strand>
        <mrna_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTG..................................................................................................................................................................................GAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGC-TTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGCTATTGTTCGTTACTTGTTTCTTCCNNNNNNNNNNNNNNNNNNANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545619" ref_strand="+" ref_description="SGN-E545619 [TUS-68-I24]">
      <seq>gctttccaactgaagtccattaacagacttccggcgacacgaagcttgacaactgcaaacggaaggttacgacgatcaacgtctccgacaatgagtgcagggggagcatttggtggaaatagaggactgagaccagtgccacctgaaaaaggagtttttcctttggaccatatgcatttatgtgacctggagaagaaagagtacctcaattgtcttaaatcctctgggcataaatctgacaactgtagacacctctctaaaaagtacctggtgtgccgtatggagaagaacttgatggcaaagcaagacatgtcagaacttggctttggcaagaactatgatgcagaaacttcttcagaggaaatggaacaatagaaaaatgaaagaatggagaagatcgataaattttgttaattctctgggatccttttgagaagcctgcgtagaaagttacacatacaagcttcattatcgtcatgtgaaaactttcacagttgcttataggaggtcttctttttctagattaatgcttttttaacctcctttttccctttcttctgaattttgtgtaccttgagagcaaaaatgtatatagaaagagagaaggataaagaaatgctatgataaattacagattggacagctatattcaggctattgttcgttacttgtttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="28187" stop="31971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28487" g_stop="28586" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28587" i_stop="29635" i_length="1049">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29725" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29726" i_stop="29903" i_length="178">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29904" g_stop="30001" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30002" i_stop="31279" i_length="1278">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31280" g_stop="31671" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="678" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E545619" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28487" e_stop="28586"/>
          <exon e_start="29636" e_stop="29725"/>
          <exon e_start="29904" e_stop="30001"/>
          <exon e_start="31280" e_stop="31671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAGGTGAATTTACTCTTCTCTCCCATTTCTTTAGGGTTTGTGCTCTCTCAATTTGTATGCATTCATATAGGAACAAATATATACAGTTTGATTTATCTAGCTGACCCGAATTATTTTGGGATTAATAACAAACCATCACAATATACTCAGTGTAATTGGTGTCTGGGGAGCGTAGAATATATGCATACATTACCTCTACCTTCTGAGCAAGTAGAGAAGTTGTTTGTGAAATGGTAAAATTATTTGAGAAATGAATATAGAGGATTTGTATAGCCATTGCAACTAATTTGAGATTGAGACATAATAAGTTTAATAGGTAATGATCATAATTGATCTTCTATACCCTACCAACATTGAAATGATCCTAGAAAATGTCAAATTAAAACATTTTTCTCCACTGAAAACACACTCTATTGTGGGTTCTTTTACAGCCTTCATGGATTAATCATAGAGCAAATGTGTTGGATAAGGTTGAATTATATGACTAATCGATTAATCCGGAGTAATTTGACGATATATTTTCGTGTTTGCTAGATTTATAATGGAAGGATTGTACATGGGTGGCACGGGACCTGTTGTTTTAACTTTGTGGTTTTACATTGTAGATCTTTGACCTTATGAAACAATCTAAACAAGGTAATAAGAATGTTTAGTCAAATGATTGATCATCTGTTTGATGAGTATCAAACTTTTTTTACCTATAAAGTTTAGTTGGCGTGTATTATTATTGTTATATTTGATGACAAAGGAAACCTGTAGCCGCTATCCTTTGGGTGCGCACAGGGTAAAACCAACACTCCTATGCAGTAGCTCGCAAAACACGCAACAGAGATAATTCGCACTATGCAAGCTCGGTGCATCATGTGTTATTTGTATTTTTATGACATTGAGTGTAGATAATTGTTTCCTCACTTGGTGTTTGATTTGATGCAAGTGCCTAGGTGAGGGATCTTTGTACTTTGTGACCCCCCCCCCCCCCCCTTCTCTCTTCTCTTTTGTTACCTATGTCTTGTCACTCGTGTTATACAACTTTTGTCTTCTATTTTATGAAGGGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTGGTATAATATTTCAAAAGATCTCATTATTTATTGATTTTGTTATTGTCTTCTGTTTTCCCTTCCCTTCTTTTAAGATAAAACTGTAAAAGTATAATAGAAAGTTTTTGATAGAGCATCTATTATCTTTTGCAAGGTTCATTCCTTCTTGTTGCTTACTATACTATTTGATTTGTTTTAGGAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAAGTAAGTCCATTGACATGATTTAGTAAACACTTGCACTGTTTAGTTTTTAGTATGCGAAGTTATTCTAGTGTACAGCTTCTGGTAGTCAACAAAGTACTTTCTTGCACTACAATATTGAACCACATACTTTATTCATGAGTTCATACAACTGCCAAGATTGCGAGTTCTGCACAAGGCTTGCCTCTTAATTCTTGTCATGCTTACAGAATTTTAGTTTAAGGTCATCTCCACATTTTCAATATGTTCAAGTTTGTTAAGACTATGCCTTTAAACTTCTATATTTCCTTTTTTTCTTCTTCTGTGGGCACAAGAGTTGAAACTTACCTAATTTTGTTAAGTATGACTAATTACCGGTGTTGATTTCATCTCTTCAATTGATTGGTGTTATTATGCCCTGTCTTTATCCAAAAATTGAAGAATGATGTCCCTTGTGGAGTAGGATGGCAGATTATTTAAAATCAGGACACTTGGTTCTAACAAATGTTACCAATTGGTTCAAATTCAGAACTTTTCTGGTTTTCTGCATGCTTTTCGTCAAATATCTCAAGAAAGCATGTGCACAATAGTGGATGAACAAATGCAACAAGCTGGCATTTTTGCCAAGTTTTTGGTATATTATGGATGGTCTTTAATGAATAACAGCACAAATTGTTTCTAGAAAAGCCATAAATATCATTGCATTTGTAAAGAAATGCAGAAACTAGAAGATAAGGGTTTGACACTCTCTTCAGGGGGATTCAGAAACATATAGTATGGTTCTTTTGGTCTAAGATCAATAGTTATATACAGAACCAAACCAATGAAACTATCTAGGACAAGAACAGGAAGAAAAGCATTCAAGAAAGCGATTTCTCTTTTTTTGCTTGATTGCACCTCTGTTTAGGACCCAAACAAAATGATAAGAGATCTCATAAAAGGCTAATGTCAAATTCCTGCATTTATGGAATTAGGAGAAGAAACCTTCTCCGTCTTTTTCATTTTGCCCTTTTCCTGTATACTATGTTTCTTTGGCATGTTTTATCTCAACAGAGCTTTCGGCTTTTACTTGAAAGAGAAATAGAACTGAAGAGAAATTCACACACTTGTTCCTACAGTATATTGGTGTTTATAGCAAGTAAATGCAAAGTGATGCCTCCTGGCGAAATAGTTTCATCAGATTTGTCTTTTATATCTCCTTGTATTAATTTATCACCTGCTCCTGTAGGTCTACAGCAACTAATGATCCTCTGTAGGAATTTAGGCTGTAAGAAAATGTTTTATGTTATGTTTGTTTTGCAGGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGCTTTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGCTATTGTTCGTTACTTGTTTCTTC</genome_strand>
        <mrna_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTG..................................................................................................................................................................................GAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGCGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGC-TTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGCTATTGTTCGTTACTTGTTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545618" ref_strand="+" ref_description="SGN-E545618 [TUS-68-I24](-)">
      <seq>gctttccaactgaagtccattaacagacttccggcgacacgaagcttgacaactgcaaacggaaggttacgccgatcaacgtctccgacaatgagtccagggggagcatttggtggaaatagaggactgagcccagtgccacctgaaaaaggagtttttcctttggaccatatgcatttatgtgacctggagaagaaagagcacctcaattgtcttaaatcctctgggcataaatctgacaactgtagacacctctctaaaaagtacctggtgtgccgtatggagaagaacttgatggcaaagcaagacatgtcagaacttggctttggcaagaactatgatgcagaaacttcttcagaggaaatggaacaatagaaaaatgaaagaatggagaagatcgataaattttgttaattctctgggatccttttgagaagcctgggtagaaagttacacatacaagcttcattatcgtcatgtgaaaactttcacagttgcttataggcggtcttctttttctagactaatcccttttcaacctccttttcccctttcttccgaatttcgtgtaccttgagaccaaaaacgtatataccaagagagaaggataaagaaacgctatgacaacttacagattggacagctatattcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="28187" stop="31948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28487" g_stop="28586" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28587" i_stop="29635" i_length="1049">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29725" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29726" i_stop="29903" i_length="178">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29904" g_stop="30001" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="287" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30002" i_stop="31279" i_length="1278">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31280" g_stop="31648" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="655" r_length="368" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E545618" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28487" e_stop="28586"/>
          <exon e_start="29636" e_stop="29725"/>
          <exon e_start="29904" e_stop="30001"/>
          <exon e_start="31280" e_stop="31648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAGGTGAATTTACTCTTCTCTCCCATTTCTTTAGGGTTTGTGCTCTCTCAATTTGTATGCATTCATATAGGAACAAATATATACAGTTTGATTTATCTAGCTGACCCGAATTATTTTGGGATTAATAACAAACCATCACAATATACTCAGTGTAATTGGTGTCTGGGGAGCGTAGAATATATGCATACATTACCTCTACCTTCTGAGCAAGTAGAGAAGTTGTTTGTGAAATGGTAAAATTATTTGAGAAATGAATATAGAGGATTTGTATAGCCATTGCAACTAATTTGAGATTGAGACATAATAAGTTTAATAGGTAATGATCATAATTGATCTTCTATACCCTACCAACATTGAAATGATCCTAGAAAATGTCAAATTAAAACATTTTTCTCCACTGAAAACACACTCTATTGTGGGTTCTTTTACAGCCTTCATGGATTAATCATAGAGCAAATGTGTTGGATAAGGTTGAATTATATGACTAATCGATTAATCCGGAGTAATTTGACGATATATTTTCGTGTTTGCTAGATTTATAATGGAAGGATTGTACATGGGTGGCACGGGACCTGTTGTTTTAACTTTGTGGTTTTACATTGTAGATCTTTGACCTTATGAAACAATCTAAACAAGGTAATAAGAATGTTTAGTCAAATGATTGATCATCTGTTTGATGAGTATCAAACTTTTTTTACCTATAAAGTTTAGTTGGCGTGTATTATTATTGTTATATTTGATGACAAAGGAAACCTGTAGCCGCTATCCTTTGGGTGCGCACAGGGTAAAACCAACACTCCTATGCAGTAGCTCGCAAAACACGCAACAGAGATAATTCGCACTATGCAAGCTCGGTGCATCATGTGTTATTTGTATTTTTATGACATTGAGTGTAGATAATTGTTTCCTCACTTGGTGTTTGATTTGATGCAAGTGCCTAGGTGAGGGATCTTTGTACTTTGTGACCCCCCCCCCCCCCCCTTCTCTCTTCTCTTTTGTTACCTATGTCTTGTCACTCGTGTTATACAACTTTTGTCTTCTATTTTATGAAGGGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTGGTATAATATTTCAAAAGATCTCATTATTTATTGATTTTGTTATTGTCTTCTGTTTTCCCTTCCCTTCTTTTAAGATAAAACTGTAAAAGTATAATAGAAAGTTTTTGATAGAGCATCTATTATCTTTTGCAAGGTTCATTCCTTCTTGTTGCTTACTATACTATTTGATTTGTTTTAGGAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAAGTAAGTCCATTGACATGATTTAGTAAACACTTGCACTGTTTAGTTTTTAGTATGCGAAGTTATTCTAGTGTACAGCTTCTGGTAGTCAACAAAGTACTTTCTTGCACTACAATATTGAACCACATACTTTATTCATGAGTTCATACAACTGCCAAGATTGCGAGTTCTGCACAAGGCTTGCCTCTTAATTCTTGTCATGCTTACAGAATTTTAGTTTAAGGTCATCTCCACATTTTCAATATGTTCAAGTTTGTTAAGACTATGCCTTTAAACTTCTATATTTCCTTTTTTTCTTCTTCTGTGGGCACAAGAGTTGAAACTTACCTAATTTTGTTAAGTATGACTAATTACCGGTGTTGATTTCATCTCTTCAATTGATTGGTGTTATTATGCCCTGTCTTTATCCAAAAATTGAAGAATGATGTCCCTTGTGGAGTAGGATGGCAGATTATTTAAAATCAGGACACTTGGTTCTAACAAATGTTACCAATTGGTTCAAATTCAGAACTTTTCTGGTTTTCTGCATGCTTTTCGTCAAATATCTCAAGAAAGCATGTGCACAATAGTGGATGAACAAATGCAACAAGCTGGCATTTTTGCCAAGTTTTTGGTATATTATGGATGGTCTTTAATGAATAACAGCACAAATTGTTTCTAGAAAAGCCATAAATATCATTGCATTTGTAAAGAAATGCAGAAACTAGAAGATAAGGGTTTGACACTCTCTTCAGGGGGATTCAGAAACATATAGTATGGTTCTTTTGGTCTAAGATCAATAGTTATATACAGAACCAAACCAATGAAACTATCTAGGACAAGAACAGGAAGAAAAGCATTCAAGAAAGCGATTTCTCTTTTTTTGCTTGATTGCACCTCTGTTTAGGACCCAAACAAAATGATAAGAGATCTCATAAAAGGCTAATGTCAAATTCCTGCATTTATGGAATTAGGAGAAGAAACCTTCTCCGTCTTTTTCATTTTGCCCTTTTCCTGTATACTATGTTTCTTTGGCATGTTTTATCTCAACAGAGCTTTCGGCTTTTACTTGAAAGAGAAATAGAACTGAAGAGAAATTCACACACTTGTTCCTACAGTATATTGGTGTTTATAGCAAGTAAATGCAAAGTGATGCCTCCTGGCGAAATAGTTTCATCAGATTTGTCTTTTATATCTCCTTGTATTAATTTATCACCTGCTCCTGTAGGTCTACAGCAACTAATGATCCTCTGTAGGAATTTAGGCTGTAAGAAAATGTTTTATGTTATGTTTGTTTTGCAGGAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGCTTTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGC</genome_strand>
        <mrna_strand>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGCCGATCAACGTCTCCGACAATGAGTCCA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGCATTTGGTGGAAATAGAGGACTGAGCCCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTG..................................................................................................................................................................................GAGAAGAAAGAGCACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGCGGTCTTCTTTTTCTAGACTAAT-CCCTTTTCAACCTCCTTTTCCCCTTTCTTCCGAATTTCGTGTACCTTGAGACCAAAAACGTATATACCAAGAGAGAAGGATAAAGAAACGCTATGACAACTTACAGATTGGACAGCTATATTCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311347" ref_strand="+" ref_description="SGN-E311347 [cLEZ-18-G18]">
      <seq>ctttccaactgaagtccattaacagacttccggcgacacgaagcttgacaactgcaaacggaaggttacgacgatcaacgtctccgacaatgagtgcagggggagcatttggtggaaatagaggactgagaccagtgccccctgaaaaaggagtttttcctttggaccatatgcatttatgtgacctggagaagaaagagtacctcaattgtcttaaatcctctgggcataaatctgacaactgtagacacctctctaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="+" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="28188" stop="30277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28488" g_stop="28586" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28587" i_stop="29635" i_length="1049">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29636" g_stop="29725" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="188" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29726" i_stop="29903" i_length="178">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29904" g_stop="29977" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="262" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="+" ref_id="SGN-E311347" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28488" e_stop="28586"/>
          <exon e_start="29636" e_stop="29725"/>
          <exon e_start="29904" e_stop="29977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAGGTGAATTTACTCTTCTCTCCCATTTCTTTAGGGTTTGTGCTCTCTCAATTTGTATGCATTCATATAGGAACAAATATATACAGTTTGATTTATCTAGCTGACCCGAATTATTTTGGGATTAATAACAAACCATCACAATATACTCAGTGTAATTGGTGTCTGGGGAGCGTAGAATATATGCATACATTACCTCTACCTTCTGAGCAAGTAGAGAAGTTGTTTGTGAAATGGTAAAATTATTTGAGAAATGAATATAGAGGATTTGTATAGCCATTGCAACTAATTTGAGATTGAGACATAATAAGTTTAATAGGTAATGATCATAATTGATCTTCTATACCCTACCAACATTGAAATGATCCTAGAAAATGTCAAATTAAAACATTTTTCTCCACTGAAAACACACTCTATTGTGGGTTCTTTTACAGCCTTCATGGATTAATCATAGAGCAAATGTGTTGGATAAGGTTGAATTATATGACTAATCGATTAATCCGGAGTAATTTGACGATATATTTTCGTGTTTGCTAGATTTATAATGGAAGGATTGTACATGGGTGGCACGGGACCTGTTGTTTTAACTTTGTGGTTTTACATTGTAGATCTTTGACCTTATGAAACAATCTAAACAAGGTAATAAGAATGTTTAGTCAAATGATTGATCATCTGTTTGATGAGTATCAAACTTTTTTTACCTATAAAGTTTAGTTGGCGTGTATTATTATTGTTATATTTGATGACAAAGGAAACCTGTAGCCGCTATCCTTTGGGTGCGCACAGGGTAAAACCAACACTCCTATGCAGTAGCTCGCAAAACACGCAACAGAGATAATTCGCACTATGCAAGCTCGGTGCATCATGTGTTATTTGTATTTTTATGACATTGAGTGTAGATAATTGTTTCCTCACTTGGTGTTTGATTTGATGCAAGTGCCTAGGTGAGGGATCTTTGTACTTTGTGACCCCCCCCCCCCCCCCTTCTCTCTTCTCTTTTGTTACCTATGTCTTGTCACTCGTGTTATACAACTTTTGTCTTCTATTTTATGAAGGGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTGGTATAATATTTCAAAAGATCTCATTATTTATTGATTTTGTTATTGTCTTCTGTTTTCCCTTCCCTTCTTTTAAGATAAAACTGTAAAAGTATAATAGAAAGTTTTTGATAGAGCATCTATTATCTTTTGCAAGGTTCATTCCTTCTTGTTGCTTACTATACTATTTGATTTGTTTTAGGAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAA</genome_strand>
        <mrna_strand>CTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCA-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCCCCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTG..................................................................................................................................................................................GAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270113" ref_strand="+" ref_description="SGN-E270113 [cLEM-7-N11]">
      <seq>gatcctctgagacaaacactccactaattagtggtagtcatttagctgaagaccttcaagcacaatggatgaatctcacagctgaagtggaattaaatcctggtgagctttcggtggtttatatttgtgagtttccggagatcaaagggaagttctatccagataaggctgctgctctcggagtggaacctgggccaaaatatggtcaattgcaaagagggaattcggtggagtcagatcatcaaaatatcatagttcacccttgcgatgttatggagccttccactcacggtcctattgtgctccttgttgactgtccaacaccatctcatctgcaagagttgtcatctttgcagtctcttactccgttttactcgaatatatcaggacaacctgtcgaactgtgcaaaaaagtaaattgtttgatacaccttagccctgtgtcagtaacaaatacacccgcgtatgagcaatggatggccagatttggtgaagcccatcacataatggcacgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="-" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="34972" stop="33757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34672" g_stop="34419" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34418" i_stop="34322" i_length="97">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.560" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34321" g_stop="34057" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="519" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="-" ref_id="SGN-E270113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34672" e_stop="34419"/>
          <exon e_start="34321" e_stop="34057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATAGTAAGTTAGGAAGATTCTTTCCAAAGTTTATCGTGGACTTCATAGTCTATCTCATTAAGTTCTCGGTGCTTTGCTTGCATTTTTTTTCGCTGCACAGGTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</genome_strand>
        <mrna_strand>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA.................................................................................................GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735948" ref_strand="+" ref_description="SGN-E735948 [LC03DB11]">
      <seq>cgtttaaattcaccggtggaaaaaaaaaaaagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaacaagggctgagggtaatcataataatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacagatcctaggaaatggcatggatactcaagatacatcaccctctgtcctcctcttttcggacaaatggaggtttttatttaacgcgggagaaggattgcaacgcttcttgacagagcataaaattacattgtcacagattgatcacctatttctatcacgtgtctgctcagaaactgttggtggactcccaggttggttatcaatgagcacaatatgaaagttaacttaagtgtctggatcaaactaacccttgagaagactctggcgtattgattgcagttgattaaaaccaccaaagaagttctattgttttacttgcaggtctcctattgactttggctgggatgggaaaagaagggatgtcagtaaatgtatcgggtcctccggatctttatctattggttaaagcaatggaatcattcatcccanattctgccatgggtcaaatagatagtgttctccgtaatggatcagatgaagttgctaccgcttcttcaagtaagtttgatcgtctttttgctcccattactgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="-" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="38542" stop="34441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38244" g_stop="38063" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38062" i_stop="37244" i_length="819">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37243" g_stop="37154" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37153" i_stop="35522" i_length="1632">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35521" g_stop="35477" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="315" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35476" i_stop="35376" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35375" g_stop="35147" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="544" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35146" i_stop="34911" i_length="236">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34910" g_stop="34741" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="714" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="-" ref_id="SGN-E735948" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38244" e_stop="38063"/>
          <exon e_start="37243" e_stop="37154"/>
          <exon e_start="35521" e_stop="35477"/>
          <exon e_start="35375" e_stop="35147"/>
          <exon e_start="34910" e_stop="34741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAAAAAACGCTATGTGATTCTTCTATATGTCCTAAACTTGGTGGACAGAGTTAGAATTATGTACCTGTTCTGTCATAGACTTGGTGGACAGAGTTATGGACCTGTTGTTGCTGGTGGGAGGTGGCAATTATCGCGTGGAATTAGTGCAACTACGTGAAAGTATGCTCAGACACCACATTCATTAGAAAAACACTTTGAATGTTTCTTGTAGTAACTAAATCATTCAATATATTCACGGAAATTGTAAGAGTATTCATTAACTGTTTCGTTTTTCACAGTAAGGATGTTTGGTGTGGACAAATATCTTGTGTCCTTATAAATATGCATTTAACTTATATGTTCATTAATCATATCAAGTTTGTTATTCTAATTGCTTGCTTTCTCACCCCTCGGAAAAATTTAACTTCTTTTGATTCTTTAAATTTCACACAGATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAAGTAAGTGTTTTTCAAGTTCCCTTCTGTAAATAACATTAGGGCGGTTGTTTGGTTTGCGAACTAGTTATGCAACAATAAAATGTGCATGGACTATTATATGGTGAACTGTTTTTGATAAATAAGAATGCGTTAATCGTTATGTAAAGTTTGAGATAACCATATCAAGAACTAGTTTAATTGTGCAATTGCTAAAACACATATTCTTATTGCGCATTCTATATTGTATAAAATATTGAATAAATTGACCATATAAGGTCTGTAGGTAATAGTTATTTGGAGTTTTCTGCCAGACGTTTTATGAGTAATGCGGAATTTTATATCGAAAACCATTAGTGTGATGTATTAACTATGTATTGCGTAACTATGATTTATTTTTCTGTACAACAAAATGGGTGATCCCTCAAGTGTGTGTTGCAGGTGGTTCTCATATTGTTCTAGTTGATACTATAAGTGCAGCATAGTTCTATTGTGAATCTATTTAGTTAGTTTGGCAATATCTCGATATCTATTTGATTGTACTTTGATTATAGTATCTATTTTGTTGTAGATACTGCTCCCTTTTGTCAGAATGTTTTTTTCATGCCATCTTTAGTATTTTGGTCGTGGCTTCTTCACTTATGTTATTTCTTTTCCCGTAGTGTTTTGTTATGTGTTTTCTTGAGCATAGGGTCTATCGGAAACAACATCTCTACCTCCCAAGGCAGGGGGGTAAGGTTTGCGTACACACTATACTCCCCAGACCCCACTTGTGGGATTATACTGGGTATGTTGTTGTTGTTGACGATGATGATTGAGTATTATGGCCATTTTTTATTGCTTTTGTGAAGCTGGTAGACTAATTTGACCTAAAAAGATACCTAGTTTGCATTTAATTTTATATTGTTTATATAAAGTCTAAATCCAGCTATATTCTGTTAGAATGAGCATAATGCAGTAGAACGGTATAGAGGATCTATACAGCTGAATGCATCTAGATTCCTGTTGAGGCATAGTGGATTAAGTGCCCGTTTGGATTAACTTAATTTTTAGGTGCTTTTGACTTTTAAGTAGTTTTTTAGTTTTGGAGGTGTTTGAAAAGGTTATGAAGTGCTTTTAAGCACCCACTTTTAGGCCAGAAAAGTTCTAAAATAACGCAAAAGTCAAAAGTAAGGTACCATCTACTTATGACTTATAAATTACTTTTTATAAGCCCATCCAAACAAACCCTAATTGTTTGATCCACCTATTCTCGATTCTGTTGAATATATGTTTAGTAGATGAACGAGGAGGCATTTTTCTTGTAACAATAAAAAAATGATTTAGCTATTGTCTATGTCTTTATCATTGTTCTAGTAGGTTTCCTCTTCATAATATCCTTCAACAAATGTTTTCCACTTTTGTCCTTCTTGCTCTTCCTTGGTTCTCGTTGCCTTTGTAAAAAGAGGATTGCTGTAGATAAATTGGAAGAATAAAAAAATGTACAGTTGGTTGTCTAGTGCGGTTACGTCTCTTGTGTGGTTTGTAAGCTATTGCATAGGAGCGGAGGTTTTATCCTGTGAACACTCAAAGGGTAGTAGCTGTTGATTTCCCTTGTCACAAAAAAAAAGTACACTTGGACTTAGTTCTCAACACCTATTTATGTTTTGCTTGCAGGGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAGGTATTCAGATATATTATCTTGCTGTTGTAAACCTAATTATGTGTAAGTTACTTTGTTGCTGTTCTAGGGAAATACACATAAAAGTCTTTTTTTTTAACCAGATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCAGTGAGTGTCTCATTAACTTATTTTACTTACTACTTATTCATCACAAATTTCATCGCTTTTCTTATTTGTATTTTTACTTTTATTGTTTTATACGTTATTAGCTTGAGATGAATTTAAATGGAGATAAATGGTCAGAGAGAATTCGTATAGTCGATCCCAGCTTGTTTAGGATTGAGGTGTTGTTGCTTACAAATGGAGTTTGAAAATTTGATACAGCTTATACCATTTGCTTGCAGGTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</genome_strand>
        <mrna_strand>CGTTTAAATTCACCGGTGGAAAAAAAAAAAAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAACAAGGGCTGAGGGTAATCATAATAATGACAAGCCGAAG-AAAAACCCTCTACCGGAAGAAGACGAGCTC-AAAAAAACTGGTAATAACAAGTCATATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG.....................................................................................................ATTGATCACCTATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAAGTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA............................................................................................................................................................................................................................................GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCANATTCTGCCATGGGTCAAATAGATAGTGTTCTCCGTAATGGATCAGATGAAGTTGCTACCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339268" ref_strand="+" ref_description="SGN-E339268 [cTOF-4-O4]">
      <seq>ccgaaactaagaattcgccggtggaagagagaaagagggaatcgttgtgtaaatttttgagtggaatggggaagaagaggaaaagaagggctgagggtaatcatagtaatgacaagccgaagaaaaaccctctaccggaagaagacgagctcaaaaaaactggtaataacaagtcatatatacaggtaagttcaaaatgtggtgatttctgtcaatttaagcaggaaactgaactgggtgttactcaacatagaaagaataacaatgtaaatggtattgtagttttggagatagttaaattcaaagaataaagttttctgctttgtactgataaaaggaaaatttctgaagaagtgttgtttattttggtagtttgacatttttaatgtgtattgtatgtacactatatatgtgtgaaaagatttagcaattgattagagcataaagttctgtcttttctgttagttttgaataataacgttttgaatattttgcacctaagagtgtggcctagtgtggcccagtggtccattaattggttgaggttcaaatcccagcatagacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0138F19-tnGJm/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0138F19.1" temp_strand="-" temp_description="C12HBa0138F19.1  AC235604.2 htgs_phase:2 submitted_to_sgn_as:gi|239369122|gb|AC235604.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-138F19, WORKING DRAFT SEQUENCE, 4 ordered pieces">
        <position start="38549" stop="37373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38249" g_stop="37673" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0138F19.1" gen_strand="-" ref_id="SGN-E339268" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0138F19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38249" e_stop="37673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</genome_strand>
        <mrna_strand>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAG-AAAAACCCTCTACCGGAAGAAGACGAGCTC-AAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACA-TTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="154" PGL_stop="8796"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="154" e_stop="189"/>
            <exon e_start="701" e_stop="859"/>
            <exon e_start="1980" e_stop="2065"/>
            <exon e_start="2427" e_stop="2505"/>
            <exon e_start="7663" e_stop="7785"/>
            <exon e_start="8080" e_stop="8136"/>
            <exon e_start="8263" e_stop="8586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="0.944"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="154" e_stop="189" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="190" i_stop="700" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="701" e_stop="859" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="860" i_stop="1979" i_length="1120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1980" e_stop="2065" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2066" i_stop="2426" i_length="361"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2427" e_stop="2505" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="2506" i_stop="7662" i_length="5157"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7663" e_stop="7785" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="7786" i_stop="8079" i_length="294"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8080" e_stop="8136" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.957">
            <gDNA_intron_boundary i_start="8137" i_stop="8262" i_length="126"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="8263" e_stop="8586" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154" stop="189"/>
              <exon start="701" stop="859"/>
              <exon start="1980" stop="2065"/>
              <exon start="2427" stop="2505"/>
              <exon start="7663" stop="7785"/>
              <exon start="8080" stop="8136"/>
              <exon start="8263" stop="8586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="701" stop="859"/>
              <exon start="1980" stop="2065"/>
              <exon start="2427" stop="2505"/>
              <exon start="7663" stop="7785"/>
              <exon start="8080" stop="8136"/>
              <exon start="8263" stop="8374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGCTATTAATATGATGCGTGATGCAAGAACTGAG : ATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTT : CTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAG : CCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAG : TTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAAT : GACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAG : ATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAGAAAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAGGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAGGTATTTGGTATTGTGATGTGATCATTACTTAACCATGAGCCTCTGTGCTCTTGTACTCGTGCTCACCTCCTTCAGTTGTTGGTGCAATGTGAACTCGAGTCT</gDNA_template>
            <first_frame> A  A  I  N  M  M  R  D  A  R  T  E  :  I  T  T  D  D  L  I  Q  A  A  Q  I  E  E  R  G  M  L  D  R  K  E  R  S  P  E  M  W  K  Q  V  A  I  N  E  A  A  M  A  V  V  A  V  N  F  P  D  L  R  N  I  E  F  :  L  T  V  A  P  R  A  G  R  D  L  G  Y  V  R  M  K  M  D  H  V  K  F  K  E  G  M  L  S :   R  Q  S  L  L  D  H  I  T  V  Q  I  A  P  R  A  A  D  E  L  W  Y  G  E  H  Q  :  F  S  T  I  W  A  E  T  A  D  N  A  R  S  A  A  R  T  F  V  L  G  G  L  S  D  K  H  Y  G  L  S  D  F  W  V  A  D  R  I  N  :  D  I  D  S  E  A  L  H  V  L  H  M  C  Y  D  R  A  K  E  :  I  L  H  Q  N  R  N  L  M  D  A  V  V  D  I  L  V  E  K  K  K  S  Y  *  G  G  I  L  *  T  S  *  A  T  W  V  P  S  T  N  A  S  Q  C  S  *  S  Q  V  C  *  T  L  G  V  P  G  H  A  H  K  A  *  G  N  Y  F  S  R  T  Q  L  S  K  V  F  G  I  V  M  *  S  L  L  N  H  E  P  L  C  S  C  T  R  A  H  L  L  Q  L  L  V  Q  C  E  L  E  S </first_frame>
            <second_frame>  L  L  L  I  *  C  V  M  Q  E  L  R :   L  Q  P  M  T  *  Y  K  L  H  K  L  K  N  E  E  C  L  T  G  R  R  E  A  L  R  C  G  S  K  W  L  L  M  K  Q  Q  W  L  W  W  Q  *  T  S  Q  I  L  E  I  L  S  F :   S  L  L  L  Q  G  L  E  E  I  W  V  M  C  G  *  K  W  I  T  S  N  L  R  K  E  C  *   : A  G  S  R  C  W  I  I  S  L  F  R  *  H  H  V  L  L  M  S  S  G  M  E  S  T  S :   S  V  Q  Y  G  L  R  L  Q  I  M  R  G  Q  R  L  G  L  L  F  L  V  V  C  L  I  N  I  M  V  C  L  T  S  G  L  Q  I  G  *  M :   T  L  I  P  R  H  F  T  Y  Y  I  C  A  M  I  V  Q  K  R :   S  F  I  K  I  E  T  L  W  M  Q  L  S  I  Y  *  L  R  K  K  S  L  T  K  E  G  F  F  K  L  V  E  L  H  G  S  L  Q  P  M  P  P  S  V  V  D  L  R  S  A  K  R  L  E  F  Q  D  T  L  T  K  H  K  E  I  I  S  Q  G  R  N  *  A  R  Y  L  V  L  *  C  D  H  Y  L  T  M  S  L  C  A  L  V  L  V  L  T  S  F  S  C  W  C  N  V  N  S  S   </second_frame>
            <third_frame>   C  Y  *  Y  D  A  *  C  K  N  *   : D  Y  N  R  *  L  D  T  S  C  T  N  *  R  T  R  N  A  *  P  E  G  E  K  P  *  D  V  E  A  S  G  Y  *  *  S  S  N  G  C  G  G  S  E  L  P  R  S  *  K  Y  *  V   : S  H  C  C  S  K  G  W  K  R  S  G  L  C  A  D  E  N  G  S  R  Q  I  *  G  R  N  V  E  :  P  A  V  A  V  G  S  Y  H  C  S  D  S  T  T  C  C  *  *  A  L  V  W  R  A  P   : V  Q  Y  N  M  G  *  D  C  R  *  C  E  V  S  G  S  D  F  C  S  W  W  S  V  *  *  T  L  W  F  V  *  L  L  G  C  R  *  D  K   : *  H  *  F  R  G  T  S  R  I  T  Y  V  L  *  S  C  K  R   : D  P  S  S  K  S  K  P  Y  G  C  S  C  R  Y  T  S  *  E  K  K  V  L  L  R  R  D  S  L  N  *  L  S  Y  M  G  P  F  N  Q  C  L  P  V  *  L  I  S  G  L  L  N  A  W  S  S  R  T  R  S  Q  S  I  R  K  L  F  L  K  D  A  T  E  Q  G  I  W  Y  C  D  V  I  I  T  *  P  *  A  S  V  L  L  Y  S  C  S  P  P  S  V  V  G  A  M  *  T  R  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154" stop="189"/>
                    <exon start="701" stop="859"/>
                    <exon start="1980" stop="2065"/>
                    <exon start="2427" stop="2505"/>
                    <exon start="7663" stop="7785"/>
                    <exon start="8080" stop="8136"/>
                    <exon start="8263" stop="8334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAINMMRDARTEITTDDLIQAAQIEERGMLDRKERSPEMWKQVAINEAAMAVVAVNFPDLRNIEFLTVAPRAGRDLGYVRMKMDHVKFKEGMLSRQSLLDHITVQIAPRAADELWYGEHQFSTIWAETADNARSAARTFVLGGLSDKHYGLSDFWVADRINDIDSEALHVLHMCYDRAKEILHQNRNLMDAVVDILVEKKKSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="701" e_stop="859"/>
            <exon e_start="1980" e_stop="2065"/>
            <exon e_start="2427" e_stop="2505"/>
            <exon e_start="7663" e_stop="7785"/>
            <exon e_start="8080" e_stop="8136"/>
            <exon e_start="8263" e_stop="8484"/>
            <exon e_start="8596" e_stop="8796"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="701" e_stop="859" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="860" i_stop="1979" i_length="1120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1980" e_stop="2065" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2066" i_stop="2426" i_length="361"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2427" e_stop="2505" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="2506" i_stop="7662" i_length="5157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7663" e_stop="7785" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.961">
            <gDNA_intron_boundary i_start="7786" i_stop="8079" i_length="294"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8080" e_stop="8136" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.957">
            <gDNA_intron_boundary i_start="8137" i_stop="8262" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="8263" e_stop="8484" e_length="222"/>
          </exon>
          <intron i_serial="6" don_prob="0.915" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8485" i_stop="8595" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8596" e_stop="8796" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="701" stop="859"/>
              <exon start="1980" stop="2065"/>
              <exon start="2427" stop="2505"/>
              <exon start="7663" stop="7785"/>
              <exon start="8080" stop="8136"/>
              <exon start="8263" stop="8374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2475" stop="2505"/>
              <exon start="7663" stop="7785"/>
              <exon start="8080" stop="8136"/>
              <exon start="8263" stop="8484"/>
              <exon start="8596" stop="8796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTACAACCGATGACTTGATACAAGCTGCACAAATTGAAGAACGAGGAATGCTTGACCGGAAGGAGAGAAGCCCTGAGATGTGGAAGCAAGTGGCTATTAATGAAGCAGCAATGGCTGTGGTGGCAGTGAACTTCCCAGATCTTAGAAATATTGAGTTT : CTCACTGTTGCTCCAAGGGCTGGAAGAGATCTGGGTTATGTGCGGATGAAAATGGATCACGTCAAATTTAAGGAAGGAATGTTGAG : CCGGCAGTCGCTGTTGGATCATATCACTGTTCAGATAGCACCACGTGCTGCTGATGAGCTCTGGTATGGAGAGCACCAG : TTCAGTACAATATGGGCTGAGACTGCAGATAATGCGAGGTCAGCGGCTCGGACTTTTGTTCTTGGTGGTCTGTCTGATAAACATTATGGTTTGTCTGACTTCTGGGTTGCAGATAGGATAAAT : GACATTGATTCCGAGGCACTTCACGTATTACATATGTGCTATGATCGTGCAAAAGAG : ATCCTTCATCAAAATCGAAACCTTATGGATGCAGTTGTCGATATACTAGTTGAGAAAAAAAAGTCTTACTAAGGAGGGATTCTTTAAACTAGTTGAGCTACATGGGTCCCTTCAACCAATGCCTCCCAGTGTAGTTGATCTCAGGTCTGCTAAACGCTTGGAGTTCCAGGACACGCTCACAAAGCATAAGGAAATTATTTCTCAAGGACGCAACTGAGCAAG : GGTATGACTTCCTTAGATCTAATTTTGTCTTGAAGATCCTATTGAAGTGGTACAATTGTGGAAGCAGAATTCCACCATCTCAGATTGGACAGAGCAGATATTGCAAGAGCTCTCTGAATGTATTTTAAAGCTTCAAGCGCGAATAATGATCTCGGATATATGAAGCTATAAATGTGTATGGAATGCAGTGAACTCCTTTTT</gDNA_template>
            <first_frame> I  T  T  D  D  L  I  Q  A  A  Q  I  E  E  R  G  M  L  D  R  K  E  R  S  P  E  M  W  K  Q  V  A  I  N  E  A  A  M  A  V  V  A  V  N  F  P  D  L  R  N  I  E  F  :  L  T  V  A  P  R  A  G  R  D  L  G  Y  V  R  M  K  M  D  H  V  K  F  K  E  G  M  L  S :   R  Q  S  L  L  D  H  I  T  V  Q  I  A  P  R  A  A  D  E  L  W  Y  G  E  H  Q  :  F  S  T  I  W  A  E  T  A  D  N  A  R  S  A  A  R  T  F  V  L  G  G  L  S  D  K  H  Y  G  L  S  D  F  W  V  A  D  R  I  N  :  D  I  D  S  E  A  L  H  V  L  H  M  C  Y  D  R  A  K  E  :  I  L  H  Q  N  R  N  L  M  D  A  V  V  D  I  L  V  E  K  K  K  S  Y  *  G  G  I  L  *  T  S  *  A  T  W  V  P  S  T  N  A  S  Q  C  S  *  S  Q  V  C  *  T  L  G  V  P  G  H  A  H  K  A  *  G  N  Y  F  S  R  T  Q  L  S  K  :  G  M  T  S  L  D  L  I  L  S  *  R  S  Y  *  S  G  T  I  V  E  A  E  F  H  H  L  R  L  D  R  A  D  I  A  R  A  L  *  M  Y  F  K  A  S  S  A  N  N  D  L  G  Y  M  K  L  *  M  C  M  E  C  S  E  L  L  F </first_frame>
            <second_frame>  L  Q  P  M  T  *  Y  K  L  H  K  L  K  N  E  E  C  L  T  G  R  R  E  A  L  R  C  G  S  K  W  L  L  M  K  Q  Q  W  L  W  W  Q  *  T  S  Q  I  L  E  I  L  S  F :   S  L  L  L  Q  G  L  E  E  I  W  V  M  C  G  *  K  W  I  T  S  N  L  R  K  E  C  *   : A  G  S  R  C  W  I  I  S  L  F  R  *  H  H  V  L  L  M  S  S  G  M  E  S  T  S :   S  V  Q  Y  G  L  R  L  Q  I  M  R  G  Q  R  L  G  L  L  F  L  V  V  C  L  I  N  I  M  V  C  L  T  S  G  L  Q  I  G  *  M :   T  L  I  P  R  H  F  T  Y  Y  I  C  A  M  I  V  Q  K  R :   S  F  I  K  I  E  T  L  W  M  Q  L  S  I  Y  *  L  R  K  K  S  L  T  K  E  G  F  F  K  L  V  E  L  H  G  S  L  Q  P  M  P  P  S  V  V  D  L  R  S  A  K  R  L  E  F  Q  D  T  L  T  K  H  K  E  I  I  S  Q  G  R  N  *  A  R :   V  *  L  P  *  I  *  F  C  L  E  D  P  I  E  V  V  Q  L  W  K  Q  N  S  T  I  S  D  W  T  E  Q  I  L  Q  E  L  S  E  C  I  L  K  L  Q  A  R  I  M  I  S  D  I  *  S  Y  K  C  V  W  N  A  V  N  S  F   </second_frame>
            <third_frame>   Y  N  R  *  L  D  T  S  C  T  N  *  R  T  R  N  A  *  P  E  G  E  K  P  *  D  V  E  A  S  G  Y  *  *  S  S  N  G  C  G  G  S  E  L  P  R  S  *  K  Y  *  V   : S  H  C  C  S  K  G  W  K  R  S  G  L  C  A  D  E  N  G  S  R  Q  I  *  G  R  N  V  E  :  P  A  V  A  V  G  S  Y  H  C  S  D  S  T  T  C  C  *  *  A  L  V  W  R  A  P   : V  Q  Y  N  M  G  *  D  C  R  *  C  E  V  S  G  S  D  F  C  S  W  W  S  V  *  *  T  L  W  F  V  *  L  L  G  C  R  *  D  K   : *  H  *  F  R  G  T  S  R  I  T  Y  V  L  *  S  C  K  R   : D  P  S  S  K  S  K  P  Y  G  C  S  C  R  Y  T  S  *  E  K  K  V  L  L  R  R  D  S  L  N  *  L  S  Y  M  G  P  F  N  Q  C  L  P  V  *  L  I  S  G  L  L  N  A  W  S  S  R  T  R  S  Q  S  I  R  K  L  F  L  K  D  A  T  E  Q   : G  Y  D  F  L  R  S  N  F  V  L  K  I  L  L  K  W  Y  N  C  G  S  R  I  P  P  S  Q  I  G  Q  S  R  Y  C  K  S  S  L  N  V  F  *  S  F  K  R  E  *  *  S  R  I  Y  E  A  I  N  V  Y  G  M  Q  *  T  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="701" stop="859"/>
                    <exon start="1980" stop="2065"/>
                    <exon start="2427" stop="2505"/>
                    <exon start="7663" stop="7785"/>
                    <exon start="8080" stop="8136"/>
                    <exon start="8263" stop="8334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTDDLIQAAQIEERGMLDRKERSPEMWKQVAINEAAMAVVAVNFPDLRNIEFLTVAPRAGRDLGYVRMKMDHVKFKEGMLSRQSLLDHITVQIAPRAADELWYGEHQFSTIWAETADNARSAARTFVLGGLSDKHYGLSDFWVADRINDIDSEALHVLHMCYDRAKEILHQNRNLMDAVVDILVEKKKSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8397" stop="8484"/>
                    <exon start="8596" stop="8723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LISGLLNAWSSRTRSQSIRKLFLKDATEQGYDFLRSNFVLKILLKWYNCGSRIPPSQIGQSRYCKSSLNVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12605" PGL_stop="13926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12623" e_stop="13741"/>
            <exon e_start="13814" e_stop="13926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.812" e_score="0.947"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="12623" e_stop="13741" e_length="1119"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.812">
            <gDNA_intron_boundary i_start="13742" i_stop="13813" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="13814" e_stop="13926" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12623" stop="13234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12623" stop="13205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12623" stop="13142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12623" stop="12850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12633" stop="13036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12654" stop="13250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12655" stop="13314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12688" stop="13022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12755" stop="13467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12795" stop="13506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12796" stop="13436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12912" stop="13529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12912" stop="13106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13030" stop="13741"/>
              <exon start="13814" stop="13835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13030" stop="13474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13064" stop="13741"/>
              <exon start="13814" stop="13911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13244" stop="13741"/>
              <exon start="13814" stop="13926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATTCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTTGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTGCTTGAATTTTTATAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGTCATTTGTGACAGAAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAG : GATTGATTGTGAATAATGTTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAAACTACTTGAAACACAAACGTAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  *  S  Q  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  R  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  S  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  G  F  L  L  C  L  N  F  Y  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  V  I  C  D  R  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  T  A  K  F  F  G  V  D  F  K  R  *  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  V  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  K  P  Q  K  N  S  G  M  L  *  K  R  N  I  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  I  M  F  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  N  Y  L  K  H  K  R  K  E  M  T  V   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  F  N  H  R  K  F  F  Y  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  L  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  S  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  I  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  S  F  V  T  E  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  K  L  Q  S  F  L  E  S  T  L  R  D  D  N  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  N  L  K  R  T  L  G  C  F  R  K  E  I  *  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  H  C  *  R :   I  D  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  T  T  *  N  T  N  V  R  R  *  L  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  L  I  T  E  N  F  S  I  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  A  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  F  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  *  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  W  R  L  K  P  L  W  F  S  T  L  L  E  F  L  *  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  N  C  K  V  F  W  S  R  L  *  E  M  T  T  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  I  A  E   : G  L  I  V  N  N  V  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  K  L  L  E  T  Q  T  *  G  D  D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13528" stop="13741"/>
                    <exon start="13814" stop="13911"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVCKMICTMCIAMQKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLIAEGLIVNNVFQVAAIIEKLPPLWKDFKKLLETQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12605" e_stop="12800"/>
            <exon e_start="13228" e_stop="13797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.846" acc_prob="0.990" e_score="0.893"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="12605" e_stop="12800" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.846" acc_prob="0.990">
            <gDNA_intron_boundary i_start="12801" i_stop="13227" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="13228" e_stop="13797" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12605" stop="12800"/>
              <exon start="13228" stop="13797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTTAATCACAGAAAATTTTTCTATCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGCGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAAACTGCAAAGTTTTTTGGAGTCGACTTTAAGAGATGACAACAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGTTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATATAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCATTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCAC</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  *  S  Q  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  R  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  K  L  Q  S  F  L  E  S  T  L  R  D  D  N  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  N  L  K  R  T  L  G  C  F  R  K  E  I  *  N  R  R  C  R  N  E  E  I  H  C  G  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  H  C  *  R  Y  K  F  I  *  C  L  C  *  K  Y  *  V  F  P  *  Y  S  </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  F  N  H  R  K  F  F  Y  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  K  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  N  C  K  V  F  W  S  R  L  *  E  M  T  T  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  I  A  E  G  I  N  L  F  N  A  Y  V  R  N  I  K  F  S  L  N  T  H </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  L  I  T  E  N  F  S  I  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  A  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  T  A  K  F  F  G  V  D  F  K  R  *  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  V  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  K  P  Q  K  N  S  G  M  L  *  K  R  N  I  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  V  *  I  Y  L  M  P  M  L  E  I  L  S  F  P  L  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13528" stop="13797"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVCKMICTMCIAMQKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLIAEGINLFNAYVRNIKFSLNTH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13938" PGL_stop="15157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13938" e_stop="14646"/>
            <exon e_start="15141" e_stop="15157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.648" e_score="0.963"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="13938" e_stop="14646" e_length="709"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.648">
            <gDNA_intron_boundary i_start="14647" i_stop="15140" i_length="494"/>
          </intron>
          <exon e_serial="2" e_score="0.706">
            <gDNA_exon_boundary e_start="15141" e_stop="15157" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13938" stop="14643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14088" stop="14643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14112" stop="14643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14144" stop="14646"/>
              <exon start="15141" stop="15157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCGGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGACTAATGAATGCCGGGGTCCTAAAAAGGACAAGAAAAAGAAAGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGAGAGATTCTGGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGTTGTTGCAAAAGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAAATTTTGCTTCTTCTTACTT : AAAGAAAAAAATCGAAC</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  R  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  T  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  E  R  F  W  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  K  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  A  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  T   : *  R  K  K  S  N </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  G  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  A  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  K  R  T  R  K  R  K  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  R  D  S  G  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  S  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  N  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  W  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  K  F  C  F  F  L  L  :  K  E  K  N  R   </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  A  S  G  P  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  D  *  *  M  P  G  S  *  K  G  Q  E  K  E  R  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  E  I  L  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  I  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  G  L  F  K  L  N  V  I  A  V  D  M  N  K  N  F  A  S  S  Y  L :   K  K  K  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14219" stop="14646"/>
                    <exon start="15141" stop="15156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQCFQNVTWLEIQENGGEILASCHVCANKELFSSYTPALTDEKLFMANSVVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPILTKNGFKCVFVSDKVVVSKNDMYVGKGYLSDGLFKLNVIAVDMNKNFASSYLKKKIE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14043" stop="14243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKERKHLVQKSNPPKKKFNGNCFNCGKHGHRTNECRGPKKDKKKKDQANLAESKGEMDDLCNAFRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18331" PGL_stop="18557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18331" e_stop="18557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="18331" e_stop="18557" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18331" stop="18557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTTATTTTTTAATCATAGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTAGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  L  F  F  N  H  R  K  F  F  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  *  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  Y  F  L  I  I  E  N  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  R  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  F  I  F  *  S  *  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0138F19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28487" PGL_stop="31693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28487" e_stop="28586"/>
            <exon e_start="29636" e_stop="29725"/>
            <exon e_start="29904" e_stop="30001"/>
            <exon e_start="31280" e_stop="31693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.959" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="28487" e_stop="28586" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28587" i_stop="29635" i_length="1049"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29636" e_stop="29725" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.974">
            <gDNA_intron_boundary i_start="29726" i_stop="29903" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29904" e_stop="30001" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30002" i_stop="31279" i_length="1278"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="31280" e_stop="31693" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28487" stop="28586"/>
              <exon start="29636" stop="29725"/>
              <exon start="29904" stop="30001"/>
              <exon start="31280" stop="31693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28487" stop="28586"/>
              <exon start="29636" stop="29725"/>
              <exon start="29904" stop="30001"/>
              <exon start="31280" stop="31671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28487" stop="28586"/>
              <exon start="29636" stop="29725"/>
              <exon start="29904" stop="30001"/>
              <exon start="31280" stop="31648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28488" stop="28586"/>
              <exon start="29636" stop="29725"/>
              <exon start="29904" stop="29977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTTCCAACTGAAGTCCATTAACAGACTTCCGGCGACACGAAGCTTGACAACTGCAAACGGAAGGTTACGACGATCAACGTCTCCGACAATGAGTGCAG : GGGGGAGCATTTGGTGGAAATAGAGGACTGAGACCAGTGCCACCTGAAAAAGGAGTTTTTCCTTTGGACCATATGCATTTATGTGACCTG : GAGAAGAAAGAGTACCTCAATTGTCTTAAATCCTCTGGGCATAAATCTGACAACTGTAGACACCTCTCTAAAAAGTACCTGGTGTGCCGTATGGAGAA : GAACTTGATGGCAAAGCAAGACATGTCAGAACTTGGCTTTGGCAAGAACTATGATGCAGAAACTTCTTCAGAGGAAATGGAACAATAGAAAAATGAAAGAATGGAGAAGATCGATAAATTTTGTTAATTCTCTGGGATCCTTTTGAGAAGCCTGGGTAGAAAGTTACACATACAAGCTTCATTATCGTCATGTGAAAACTTTCACAGTTGCTTATAGGAGGTCTTCTTTTTCTAGATTAATGCTTTTTTTAACCTCCTTTTTCCCTTTCTTCTGAATTTTGTGTACCTTGAGAGCAAAAATGTATATAGAAAGAGAGAAGGATAAAGAAATGCTATGATAAATTACAGATTGGACAGCTATATTCAGGCTATTGTTCGTTACTTGTTTCTTCCATATCTCTGTTGCTTCAGCAG</gDNA_template>
            <first_frame> A  F  Q  L  K  S  I  N  R  L  P  A  T  R  S  L  T  T  A  N  G  R  L  R  R  S  T  S  P  T  M  S  A   : G  G  S  I  W  W  K  *  R  T  E  T  S  A  T  *  K  R  S  F  S  F  G  P  Y  A  F  M  *  P   : G  E  E  R  V  P  Q  L  S  *  I  L  W  A  *  I  *  Q  L  *  T  P  L  *  K  V  P  G  V  P  Y  G  E  :  E  L  D  G  K  A  R  H  V  R  T  W  L  W  Q  E  L  *  C  R  N  F  F  R  G  N  G  T  I  E  K  *  K  N  G  E  D  R  *  I  L  L  I  L  W  D  P  F  E  K  P  G  *  K  V  T  H  T  S  F  I  I  V  M  *  K  L  S  Q  L  L  I  G  G  L  L  F  L  D  *  C  F  F  *  P  P  F  S  L  S  S  E  F  C  V  P  *  E  Q  K  C  I  *  K  E  R  R  I  K  K  C  Y  D  K  L  Q  I  G  Q  L  Y  S  G  Y  C  S  L  L  V  S  S  I  S  L  L  L  Q  Q </first_frame>
            <second_frame>  L  S  N  *  S  P  L  T  D  F  R  R  H  E  A  *  Q  L  Q  T  E  G  Y  D  D  Q  R  L  R  Q  *  V  Q  :  G  G  A  F  G  G  N  R  G  L  R  P  V  P  P  E  K  G  V  F  P  L  D  H  M  H  L  C  D  L  :  E  K  K  E  Y  L  N  C  L  K  S  S  G  H  K  S  D  N  C  R  H  L  S  K  K  Y  L  V  C  R  M  E  K :   N  L  M  A  K  Q  D  M  S  E  L  G  F  G  K  N  Y  D  A  E  T  S  S  E  E  M  E  Q  *  K  N  E  R  M  E  K  I  D  K  F  C  *  F  S  G  I  L  L  R  S  L  G  R  K  L  H  I  Q  A  S  L  S  S  C  E  N  F  H  S  C  L  *  E  V  F  F  F  *  I  N  A  F  F  N  L  L  F  P  F  L  L  N  F  V  Y  L  E  S  K  N  V  Y  R  K  R  E  G  *  R  N  A  M  I  N  Y  R  L  D  S  Y  I  Q  A  I  V  R  Y  L  F  L  P  Y  L  C  C  F  S   </second_frame>
            <third_frame>   F  P  T  E  V  H  *  Q  T  S  G  D  T  K  L  D  N  C  K  R  K  V  T  T  I  N  V  S  D  N  E  C  R :   G  E  H  L  V  E  I  E  D  *  D  Q  C  H  L  K  K  E  F  F  L  W  T  I  C  I  Y  V  T  W :   R  R  K  S  T  S  I  V  L  N  P  L  G  I  N  L  T  T  V  D  T  S  L  K  S  T  W  C  A  V  W  R   : R  T  *  W  Q  S  K  T  C  Q  N  L  A  L  A  R  T  M  M  Q  K  L  L  Q  R  K  W  N  N  R  K  M  K  E  W  R  R  S  I  N  F  V  N  S  L  G  S  F  *  E  A  W  V  E  S  Y  T  Y  K  L  H  Y  R  H  V  K  T  F  T  V  A  Y  R  R  S  S  F  S  R  L  M  L  F  L  T  S  F  F  P  F  F  *  I  L  C  T  L  R  A  K  M  Y  I  E  R  E  K  D  K  E  M  L  *  *  I  T  D  W  T  A  I  F  R  L  L  F  V  T  C  F  F  H  I  S  V  A  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28581" stop="28586"/>
                    <exon start="29636" stop="29725"/>
                    <exon start="29904" stop="30001"/>
                    <exon start="31280" stop="31367"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYLVCRMEKNLMAKQDMSELGFGKNYDAETSSEEMEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34672" PGL_stop="34057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34672" e_stop="34419"/>
            <exon e_start="34321" e_stop="34057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.560" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34672" e_stop="34419" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.560">
            <gDNA_intron_boundary i_start="34418" i_stop="34322" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34321" e_stop="34057" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34672" stop="34419"/>
              <exon start="34321" stop="34057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTCTGAGACAAACACTCCACTAATTAGTGGTAGTCATTTAGCTGAAGACCTTCAAGCACAATGGATGAATCTCACAGCTGAAGTGGAATTAAATCCTGGTGAGCTTTCGGTGGTTTATATTTGTGAGTTTCCGGAGATCAAAGGGAAGTTCTATCCAGATAAGGCTGCTGCTCTCGGAGTGGAACCTGGGCCAAAATATGGTCAATTGCAAAGAGGGAATTCGGTGGAGTCAGATCATCAAAATATCATA : GTTCACCCTTGCGATGTTATGGAGCCTTCCACTCACGGTCCTATTGTGCTCCTTGTTGACTGTCCAACACCATCTCATCTGCAAGAGTTGTCATCTTTGCAGTCTCTTACTCCGTTTTACTCGAATATATCAGGACAACCTGTCGAACTGTGCAAAAAAGTAAATTGTTTGATACACCTTAGCCCTGTGTCAGTAACAAATACACCCGCGTATGAGCAATGGATGGCCAGATTTGGTGAAGCCCATCACATAATGGCACGACATG</gDNA_template>
            <first_frame> D  P  L  R  Q  T  L  H  *  L  V  V  V  I  *  L  K  T  F  K  H  N  G  *  I  S  Q  L  K  W  N  *  I  L  V  S  F  R  W  F  I  F  V  S  F  R  R  S  K  G  S  S  I  Q  I  R  L  L  L  S  E  W  N  L  G  Q  N  M  V  N  C  K  E  G  I  R  W  S  Q  I  I  K  I  S  * :   F  T  L  A  M  L  W  S  L  P  L  T  V  L  L  C  S  L  L  T  V  Q  H  H  L  I  C  K  S  C  H  L  C  S  L  L  L  R  F  T  R  I  Y  Q  D  N  L  S  N  C  A  K  K  *  I  V  *  Y  T  L  A  L  C  Q  *  Q  I  H  P  R  M  S  N  G  W  P  D  L  V  K  P  I  T  *  W  H  D  M </first_frame>
            <second_frame>  I  L  *  D  K  H  S  T  N  *  W  *  S  F  S  *  R  P  S  S  T  M  D  E  S  H  S  *  S  G  I  K  S  W  *  A  F  G  G  L  Y  L  *  V  S  G  D  Q  R  E  V  L  S  R  *  G  C  C  S  R  S  G  T  W  A  K  I  W  S  I  A  K  R  E  F  G  G  V  R  S  S  K  Y  H   : S  S  P  L  R  C  Y  G  A  F  H  S  R  S  Y  C  A  P  C  *  L  S  N  T  I  S  S  A  R  V  V  I  F  A  V  S  Y  S  V  L  L  E  Y  I  R  T  T  C  R  T  V  Q  K  S  K  L  F  D  T  P  *  P  C  V  S  N  K  Y  T  R  V  *  A  M  D  G  Q  I  W  *  S  P  S  H  N  G  T  T   </second_frame>
            <third_frame>   S  S  E  T  N  T  P  L  I  S  G  S  H  L  A  E  D  L  Q  A  Q  W  M  N  L  T  A  E  V  E  L  N  P  G  E  L  S  V  V  Y  I  C  E  F  P  E  I  K  G  K  F  Y  P  D  K  A  A  A  L  G  V  E  P  G  P  K  Y  G  Q  L  Q  R  G  N  S  V  E  S  D  H  Q  N  I  I  :  V  H  P  C  D  V  M  E  P  S  T  H  G  P  I  V  L  L  V  D  C  P  T  P  S  H  L  Q  E  L  S  S  L  Q  S  L  T  P  F  Y  S  N  I  S  G  Q  P  V  E  L  C  K  K  V  N  C  L  I  H  L  S  P  V  S  V  T  N  T  P  A  Y  E  Q  W  M  A  R  F  G  E  A  H  H  I  M  A  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34670" stop="34419"/>
                    <exon start="34321" stop="34058"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSETNTPLISGSHLAEDLQAQWMNLTAEVELNPGELSVVYICEFPEIKGKFYPDKAAALGVEPGPKYGQLQRGNSVESDHQNIIVHPCDVMEPSTHGPIVLLVDCPTPSHLQELSSLQSLTPFYSNISGQPVELCKKVNCLIHLSPVSVTNTPAYEQWMARFGEAHHIMARH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="38249" PGL_stop="34741"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38249" e_stop="37673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38249" e_stop="37673" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38249" stop="37673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGAAACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAAACTGGTAATAACAAGTCATATATACAGGTAAGTTCAAAATGTGGTGATTTCTGTCAATTTAAGCAGGAAACTGAACTGGGTGTTACTCAACATAGAAAGAATAACAATGTAAATGGTATTGTAGTTTTGGAGATAGTTAAATTCAAAGAATAAAGTTTTCTGCTTTGTACTGATAAAAGGAAAATTTCTGAAGAAGTGTTGTTTATTTTGGTAGTTTGACATTTTTTAATGTGTATTGTATGTACACTATATATGTGTGAAAAGATTTAGCAATTGATTAGAGCATAAAGTTCTGTCTTTTCTGTTAGTTTTGAATAATAACGTTTTGAATATTTTGCACCTAAGAGTGTGGCCTAGTGTGGCCCAGTGGTCCATTAATTGGTTGAGGTTCAAATCCCAGCATAGACAAAAAAAAAA</gDNA_template>
            <first_frame> P  K  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  N  P  L  P  E  E  D  E  L  K  K  N  W  *  *  Q  V  I  Y  T  G  K  F  K  M  W  *  F  L  S  I  *  A  G  N  *  T  G  C  Y  S  T  *  K  E  *  Q  C  K  W  Y  C  S  F  G  D  S  *  I  Q  R  I  K  F  S  A  L  Y  *  *  K  E  N  F  *  R  S  V  V  Y  F  G  S  L  T  F  F  N  V  Y  C  M  Y  T  I  Y  V  *  K  D  L  A  I  D  *  S  I  K  F  C  L  F  C  *  F  *  I  I  T  F  *  I  F  C  T  *  E  C  G  L  V  W  P  S  G  P  L  I  G  *  G  S  N  P  S  I  D  K  K  K  </first_frame>
            <second_frame>  R  N  *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  T  L  Y  R  K  K  T  S  S  K  K  T  G  N  N  K  S  Y  I  Q  V  S  S  K  C  G  D  F  C  Q  F  K  Q  E  T  E  L  G  V  T  Q  H  R  K  N  N  N  V  N  G  I  V  V  L  E  I  V  K  F  K  E  *  S  F  L  L  C  T  D  K  R  K  I  S  E  E  V  L  F  I  L  V  V  *  H  F  L  M  C  I  V  C  T  L  Y  M  C  E  K  I  *  Q  L  I  R  A  *  S  S  V  F  S  V  S  F  E  *  *  R  F  E  Y  F  A  P  K  S  V  A  *  C  G  P  V  V  H  *  L  V  E  V  Q  I  P  A  *  T  K  K  K </second_frame>
            <third_frame>   E  T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  K  P  S  T  G  R  R  R  A  Q  K  K  L  V  I  T  S  H  I  Y  R  *  V  Q  N  V  V  I  S  V  N  L  S  R  K  L  N  W  V  L  L  N  I  E  R  I  T  M  *  M  V  L  *  F  W  R  *  L  N  S  K  N  K  V  F  C  F  V  L  I  K  G  K  F  L  K  K  C  C  L  F  W  *  F  D  I  F  *  C  V  L  Y  V  H  Y  I  C  V  K  R  F  S  N  *  L  E  H  K  V  L  S  F  L  L  V  L  N  N  N  V  L  N  I  L  H  L  R  V  W  P  S  V  A  Q  W  S  I  N  W  L  R  F  K  S  Q  H  R  Q  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38137" stop="37937"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAEEKTLYRKKTSSKKTGNNKSYIQVSSKCGDFCQFKQETELGVTQHRKNNNVNGIVVLEIVKFKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38244" e_stop="38063"/>
            <exon e_start="37243" e_stop="37154"/>
            <exon e_start="35521" e_stop="35477"/>
            <exon e_start="35375" e_stop="35147"/>
            <exon e_start="34910" e_stop="34741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.920" e_score="0.923"/>
          <exon-intron don_prob="0.873" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="0.991"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="38244" e_stop="38063" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.920">
            <gDNA_intron_boundary i_start="38062" i_stop="37244" i_length="819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37243" e_stop="37154" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.873" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37153" i_stop="35522" i_length="1632"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35521" e_stop="35477" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.827">
            <gDNA_intron_boundary i_start="35476" i_stop="35376" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="35375" e_stop="35147" e_length="229"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="35146" i_stop="34911" i_length="236"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="34910" e_stop="34741" e_length="170"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38244" stop="38063"/>
              <exon start="37243" stop="37154"/>
              <exon start="35521" stop="35477"/>
              <exon start="35375" stop="35147"/>
              <exon start="34910" stop="34741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGAATTCGCCGGTGGAAGAGAGAAAGAGGGAATCGTTGTGTAAATTTTTGAGTGGAATGGGGAAGAAGAGGAAAAGAAGGGCTGAGGGTAATCATAGTAATGACAAGCCGAAGAAAAAACCCTCTACCGGAAGAAGACGAGCTCAAAAAAAACTGGTAATAACAAGTCATATATACAG : ATCCTAGGAAATGGCATGGATACTCAAGATACATCACCCTCTGTCCTCCTCTTTTCGGACAAATGGAGGTTTTTATTTAACGCGGGAGAA : GGATTGCAACGCTTCTTGACAGAGCATAAAATTACATTGTCACAG : ATTGATCACATATTTCTATCACGTGTCTGCTCAGAAACTGTTGGTGGACTCCCAGGTTGGTTATCAATGAGCACAATATGAAAGTTAACTTAACTGTCTGGATCAAACTAACCCTTGAGAAGACTCTGGCGTATTGATTGCAGTTGATTAAAACCACCAAAGAAGTTCTATTGTTTTACTTGCAGGTCTCCTATTGACTTTGGCTGGGATGGGAAAAGAAGGGATGTCA : GTAAATGTATCGGGTCCTCCGGATCTTTATCTATTGGTTAAAGCAATGGAATCATTCATCCCAAATTCTGCCATGGGTCAAATAGATAGTGTTCTCTGTAATGGATCAGATGAAGTTGCTAGCGCTTCTTCAAGTAAGTTTGATCGTCTTTTTGCTCCCATTACTGATGG</gDNA_template>
            <first_frame> T  K  N  S  P  V  E  E  R  K  R  E  S  L  C  K  F  L  S  G  M  G  K  K  R  K  R  R  A  E  G  N  H  S  N  D  K  P  K  K  K  P  S  T  G  R  R  R  A  Q  K  K  L  V  I  T  S  H  I  Y  R :   S  *  E  M  A  W  I  L  K  I  H  H  P  L  S  S  S  F  R  T  N  G  G  F  Y  L  T  R  E  K :   D  C  N  A  S  *  Q  S  I  K  L  H  C  H  R :   L  I  T  Y  F  Y  H  V  S  A  Q  K  L  L  V  D  S  Q  V  G  Y  Q  *  A  Q  Y  E  S  *  L  N  C  L  D  Q  T  N  P  *  E  D  S  G  V  L  I  A  V  D  *  N  H  Q  R  S  S  I  V  L  L  A  G  L  L  L  T  L  A  G  M  G  K  E  G  M  S  :  V  N  V  S  G  P  P  D  L  Y  L  L  V  K  A  M  E  S  F  I  P  N  S  A  M  G  Q  I  D  S  V  L  C  N  G  S  D  E  V  A  S  A  S  S  S  K  F  D  R  L  F  A  P  I  T  D   </first_frame>
            <second_frame>  L  R  I  R  R  W  K  R  E  R  G  N  R  C  V  N  F  *  V  E  W  G  R  R  G  K  E  G  L  R  V  I  I  V  M  T  S  R  R  K  N  P  L  P  E  E  D  E  L  K  K  N  W  *  *  Q  V  I  Y  T   : D  P  R  K  W  H  G  Y  S  R  Y  I  T  L  C  P  P  L  F  G  Q  M  E  V  F  I  *  R  G  R   : R  I  A  T  L  L  D  R  A  *  N  Y  I  V  T   : D  *  S  H  I  S  I  T  C  L  L  R  N  C  W  W  T  P  R  L  V  I  N  E  H  N  M  K  V  N  L  T  V  W  I  K  L  T  L  E  K  T  L  A  Y  *  L  Q  L  I  K  T  T  K  E  V  L  L  F  Y  L  Q  V  S  Y  *  L  W  L  G  W  E  K  K  G  C  Q :   *  M  Y  R  V  L  R  I  F  I  Y  W  L  K  Q  W  N  H  S  S  Q  I  L  P  W  V  K  *  I  V  F  S  V  M  D  Q  M  K  L  L  A  L  L  Q  V  S  L  I  V  F  L  L  P  L  L  M  </second_frame>
            <third_frame>   *  E  F  A  G  G  R  E  K  E  G  I  V  V  *  I  F  E  W  N  G  E  E  E  E  K  K  G  *  G  *  S  *  *  *  Q  A  E  E  K  T  L  Y  R  K  K  T  S  S  K  K  T  G  N  N  K  S  Y  I  Q  :  I  L  G  N  G  M  D  T  Q  D  T  S  P  S  V  L  L  F  S  D  K  W  R  F  L  F  N  A  G  E  :  G  L  Q  R  F  L  T  E  H  K  I  T  L  S  Q  :  I  D  H  I  F  L  S  R  V  C  S  E  T  V  G  G  L  P  G  W  L  S  M  S  T  I  *  K  L  T  *  L  S  G  S  N  *  P  L  R  R  L  W  R  I  D  C  S  *  L  K  P  P  K  K  F  Y  C  F  T  C  R  S  P  I  D  F  G  W  D  G  K  R  R  D  V   : S  K  C  I  G  S  S  G  S  L  S  I  G  *  S  N  G  I  I  H  P  K  F  C  H  G  S  N  R  *  C  S  L  *  W  I  R  *  S  C  *  R  F  F  K  *  V  *  S  S  F  C  S  H  Y  *  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38137" stop="38063"/>
                    <exon start="37243" stop="37154"/>
                    <exon start="35521" stop="35477"/>
                    <exon start="35375" stop="35295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QAEEKTLYRKKTSSKKTGNNKSYIQILGNGMDTQDTSPSVLLFSDKWRFLFNAGEGLQRFLTEHKITLSQIDHIFLSRVCSETVGGLPGWLSMSTI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0138F19.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35224" stop="35147"/>
                    <exon start="34910" stop="34743"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHQRSSIVLLAGLLLTLAGMGKEGMSVNVSGPPDLYLLVKAMESFIPNSAMGQIDSVLCNGSDEVASASSSKFDRLFAPITD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 63 chains have been computed
$ 
$ memory statistics:
$ 107544 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 3258 bytes was the average size of a spliced alignment
$ 13712 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1958 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:20:56
-->
